genome.fa.s1951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1951
Parameters: 2 7 7 80 10 50 1000
Length:  63504

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459--504	12	3.8	12	79	0	56	76	2	0	21	0.90
3755--3784	14	2.1	14	93	0	51	70	0	10	20	1.16
8150--8250	52	1.9	52	90	4	159	32	16	16	33	1.92
8291--8374	13	5.5	13	68	28	51	33	19	14	33	1.91
8299--8416	19	6.7	19	72	24	107	33	17	12	35	1.88
8291--8393	32	3.2	32	97	0	197	33	19	13	33	1.91
10293--10333	20	2.0	21	86	13	59	26	19	12	41	1.87
17687--17739	20	2.6	21	82	11	74	30	18	9	41	1.82
22263--22288	13	2.0	13	100	0	52	38	15	15	30	1.88
26732--26794	19	3.6	19	76	24	84	33	12	19	34	1.89
26751--26808	13	4.0	13	74	23	53	34	15	17	32	1.91
26732--26807	32	2.4	32	97	0	143	32	14	18	34	1.91
32444--32629	96	1.9	96	92	0	309	34	13	12	38	1.84
35126--35180	21	2.8	20	79	17	62	23	5	3	67	1.28
35088--35658	164	3.4	163	82	5	680	32	9	9	49	1.67
35111--35804	164	4.2	163	79	9	631	31	10	9	49	1.68
35109--35824	332	2.2	330	81	7	860	31	9	9	49	1.68
37174--37211	15	2.6	15	88	12	53	81	0	0	18	0.69
37175--37216	18	2.3	19	83	8	59	78	2	0	19	0.86
37245--37505	142	1.8	141	87	4	391	31	9	13	45	1.76
37729--38052	161	2.0	162	91	1	526	26	16	18	38	1.91
39076--39152	21	3.7	21	89	3	111	35	12	16	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39189--39242	19	2.8	19	94	0	90	37	11	14	37	1.82
39282--39307	13	2.0	13	100	0	52	30	15	15	38	1.88
39820--39851	11	2.9	11	95	0	55	84	15	0	0	0.63
41649--41779	51	2.5	53	82	8	169	31	25	10	32	1.90
41790--42014	52	4.4	51	81	2	243	29	24	12	33	1.91
41997--42073	28	2.8	28	87	0	100	23	33	19	23	1.97
48189--48221	16	2.1	16	94	0	57	15	12	27	45	1.81
54095--54131	13	2.8	13	87	4	56	89	8	2	0	0.58
55108--56526	55	25.2	60	82	12	1384	26	29	20	23	1.99
55131--56500	102	12.3	104	80	12	1120	26	29	20	23	1.99
55108--56526	451	3.2	449	89	6	1963	26	29	20	23	1.99
57237--57313	21	3.7	21	89	3	111	35	12	16	35	1.88
57350--57465	19	6.7	19	72	22	103	37	12	14	36	1.84
57351--57445	32	3.0	32	95	0	163	37	12	14	34	1.84
57370--57426	13	3.9	13	76	24	60	36	14	15	33	1.88
57473--57498	13	2.0	13	100	0	52	30	15	15	38	1.88
59835--59965	51	2.5	53	85	8	187	31	25	10	32	1.90
59895--60047	81	1.9	80	86	4	220	30	28	13	28	1.94
59976--60200	52	4.4	51	80	2	234	29	25	12	32	1.92
60183--60259	28	2.8	28	85	0	91	23	35	19	22	1.96
60213--60416	78	2.6	78	82	2	230	23	29	17	29	1.97
63298--63327	15	2.1	15	93	6	53	83	0	6	10	0.81

Tables:   1

The End!