Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1957
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25475
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Found at i:1572 original size:105 final size:105
Alignment explanation
Indices: 1403--1609 Score: 369
Period size: 105 Copynumber: 2.0 Consensus size: 105
1393 TTATTTGACT
*
1403 TAACATAGGTGATGGTGATTATACCATCTCTTATTAACTGCTTTACATACTCATGTCTTAAGCTA
1 TAACATAGGTGATGGTGATTATACCATCTCTTATTAACTGCTTTACATACTCATGTCTCAAGCTA
*
1468 ATATGTCTAGACTTTCCATTATGAACCTTGTTATAGGACC
66 ATATGTCTAGACTTTCCATTATGAACCTTGCTATAGGACC
* *
1508 TAACATAGGTGATGGTGATTATACCATCTCTTATTAACTGCTTTACATATTTATGTCTCAAGCTA
1 TAACATAGGTGATGGTGATTATACCATCTCTTATTAACTGCTTTACATACTCATGTCTCAAGCTA
*
1573 ATATGTTTAGACTTTCCATTATGAACCTTGCTATAGG
66 ATATGTCTAGACTTTCCATTATGAACCTTGCTATAGG
1610 CTTAAGACAT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (105 bp):
TAACATAGGTGATGGTGATTATACCATCTCTTATTAACTGCTTTACATACTCATGTCTCAAGCTA
ATATGTCTAGACTTTCCATTATGAACCTTGCTATAGGACC
Found at i:2437 original size:69 final size:70
Alignment explanation
Indices: 2348--2498 Score: 205
Period size: 69 Copynumber: 2.2 Consensus size: 70
2338 TCACAATTTG
* * * * *
2348 TATCGATACATTGTTCATTGTATTGATACATTTTGGGTTTTACCTAGATGTATCGATACATTGTT
1 TATCGATACATTGTTCATTGTATCGATAAATTCTAGGTTTTACCCAGATGTATCGATACATTGTT
*
2413 CATTA
66 CAATA
* *
2418 TATCGATACATTGTT-ATTGTATCGATAAATTCTAGGTTTTACCCAGATGTATTGATACATTTTT
1 TATCGATACATTGTTCATTGTATCGATAAATTCTAGGTTTTACCCAGATGTATCGATACATTGTT
* *
2482 TAATG
66 CAATA
2487 TATCGATACATT
1 TATCGATACATT
2499 CAGGTATTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
69 56 0.79
70 15 0.21
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.45
Consensus pattern (70 bp):
TATCGATACATTGTTCATTGTATCGATAAATTCTAGGTTTTACCCAGATGTATCGATACATTGTT
CAATA
Found at i:2442 original size:19 final size:20
Alignment explanation
Indices: 2396--2444 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
2386 TTTACCTAGA
2396 TGTATCGATACATTGTTCAT
1 TGTATCGATACATTGTTCAT
*
2416 TATATCGATACATTGTT-AT
1 TGTATCGATACATTGTTCAT
2435 TGTATCGATA
1 TGTATCGATA
2445 AATTCTAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTGTTCAT
Found at i:4941 original size:79 final size:78
Alignment explanation
Indices: 4810--5351 Score: 620
Period size: 79 Copynumber: 6.9 Consensus size: 78
4800 TTTTTACTTC
* * *
4810 CGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTTATTTTCCATAATCGGGGATACTTC
1 CGAGGGGATACTCCAACCCCG-TTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCC
4875 AACCCCGTTATTTT
65 AACCCCGTTATTTT
* * * * *
4889 TGAGGGGATACTCCAACCCCAGTTTTATTTTTAAAACACCAATTTTTTATAATCGGAGATACTCC
1 CGAGGGGATACTCCAACCCC-GTTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCC
4954 AACCCCGTTA-TTT
65 AACCCCGTTATTTT
* * * * * * *
4967 CTGAGGAGATGCTCAAACCCCGATTTTATTTTTAAAACA-TCGATTTTTCACAGTCGGGGATACT
1 C-GAGGGGATACTCCAACCCCG-TTTTATTTTCAAAACACT-AATTTTTCATAATCGGGGATACT
5031 CCAACCCCGTTATTTT
63 CCAACCCCGTTATTTT
* * ** * **
5047 CAAAGGGATACTCCAATTCCGATTTTATTTCCAAAACACTAATTTTTCATAATCAAGGATACTCC
1 CGAGGGGATACTCCAACCCCG-TTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCC
*
5112 AACCCTGTTATTTT
65 AACCCCGTTATTTT
* * * ** * * *
5126 CGAGGGGATGCTCCAACCCCGGTTTATTTTCAAAACACGAATTTTTCATAATTAGGAATAATCTA
1 CGAGGGGATACTCCAACCCCGTTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCCA
*
5191 ACCCCGTTATTTC
66 ACCCCGTTATTTT
* * * * * *
5204 CGAAGGGATACTCCAATCCCAGTTTTATTTTCAAAACATTGATTTTTCACAATCGGGGATACTTC
1 CGAGGGGATACTCCAA-CCCCGTTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCC
*
5269 AATCCCGTTATTTT
65 AACCCCGTTATTTT
* * *
5283 CGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCCACAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCC-GTTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCC
5348 AACC
65 AACC
5352 TTAATTTTAT
Statistics
Matches: 383, Mismatches: 72, Indels: 16
0.81 0.15 0.03
Matches are distributed among these distances:
78 68 0.18
79 309 0.81
80 6 0.02
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (78 bp):
CGAGGGGATACTCCAACCCCGTTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCCA
ACCCCGTTATTTT
Found at i:5265 original size:236 final size:237
Alignment explanation
Indices: 4814--5351 Score: 742
Period size: 236 Copynumber: 2.3 Consensus size: 237
4804 TACTTCCGAG
* * *
4814 GGGATACTCCAACCCCGATTTTATTTTCAAAACACTTATTTTCCATAATCGGGGATACTTCAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAACC
* * * * *
4879 CCGTTATTTTTGAGGGGATACTCCAACCCCAGTTTTATTTTTAAAACACCAATTTTTTATAATCG
66 CCGTTATTTTCGAGGGGATACTCCAACCCCAGGTTTATTTTCAAAACACCAATTTTTCATAATAG
* * * * *
4944 GAGATACTCCAACCCCGTTATTTCTGAGGAGATGCTCAAACCCCGATTTTATTTTTAAAACATCG
131 GAGATAATCCAACCCCGTTATTTCCGAGGAGATACTCAAACCCAGATTTTATTTTCAAAACATCG
*
5009 ATTTTTCACAGTCGGGGATACTCCAACCCCGTTATTTTCAAA
196 ATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCAAA
** * **
5051 GGGATACTCCAATTCCGATTTTATTTCCAAAACACTAATTTTTCATAATCAAGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAACC
* * *
5116 CTGTTATTTTCGAGGGGATGCTCCAACCCC-GGTTTATTTTCAAAACACGAATTTTTCATAATTA
66 CCGTTATTTTCGAGGGGATACTCCAACCCCAGGTTTATTTTCAAAACACCAATTTTTCATAA-TA
* *
5180 GGA-ATAATCTAACCCCGTTATTTCCGAAGG-GATACTCCAATCCCAG-TTTTATTTTCAAAACA
130 GGAGATAATCCAACCCCGTTATTTCCG-AGGAGATACT-CAAACCCAGATTTTATTTTCAAAACA
* * * * *
5242 TTGATTTTTCACAATCGGGGATACTTCAATCCCGTTATTTTCGAG
193 TCGATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCAAA
* *
5287 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAACC
5352 TTAATTTTAT
Statistics
Matches: 262, Mismatches: 36, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
236 164 0.63
237 98 0.37
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (237 bp):
GGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAACC
CCGTTATTTTCGAGGGGATACTCCAACCCCAGGTTTATTTTCAAAACACCAATTTTTCATAATAG
GAGATAATCCAACCCCGTTATTTCCGAGGAGATACTCAAACCCAGATTTTATTTTCAAAACATCG
ATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCAAA
Found at i:5349 original size:51 final size:51
Alignment explanation
Indices: 5286--5403 Score: 139
Period size: 51 Copynumber: 2.3 Consensus size: 51
5276 TTATTTTCGA
**
5286 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACA-CTAATTTTCCACAATC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATC-AATTTTCCACAATC
** * * * *
5337 GGGGATACTCCAACCTTAATTTTATTTTCAGAACATCGATTTTTCACAATC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTCCACAATC
*
5388 GAGGATACTCCAACCC
1 GGGGATACTCCAACCC
5404 TATTATTTCT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTCCACAATC
Found at i:5363 original size:130 final size:130
Alignment explanation
Indices: 5208--5448 Score: 319
Period size: 130 Copynumber: 1.9 Consensus size: 130
5198 TATTTCCGAA
* * * *
5208 GGGATACTCCAATCCCAGTTTTATTTTCAAAACATTGATTTTTCACAATCGGGGATACTTCAATC
1 GGGATACTCCAATCCCAATTTTATTTTCAAAACATCGATTTTTCACAATCGAGGATACTCCAA-C
* * *
5273 CC-GTTATTT-TCGAGGGGATACTCCAACCCCGGT-TTTATTTCCAAAACACTAATTTTCCACAA
65 CCTATTATTTCT-GAGGAGATACTCCAACCCC-GTCTTTATCTCCAAAACACTAATTTTCCACAA
5335 TCG
128 TCG
* *
5338 GGGATACTCCAA-CCTTAATTTTATTTTCAGAACATCGATTTTTCACAATCGAGGATACTCCAAC
1 GGGATACTCCAATCC-CAATTTTATTTTCAAAACATCGATTTTTCACAATCGAGGATACTCCAAC
* *
5402 CCTATTATTTCTGAGGAGATACTCTAATCCCGTCTTTATCTCCAAAA
65 CCTATTATTTCTGAGGAGATACTCCAACCCCGTCTTTATCTCCAAAA
5449 TATTAAATTT
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
129 7 0.07
130 88 0.92
131 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (130 bp):
GGGATACTCCAATCCCAATTTTATTTTCAAAACATCGATTTTTCACAATCGAGGATACTCCAACC
CTATTATTTCTGAGGAGATACTCCAACCCCGTCTTTATCTCCAAAACACTAATTTTCCACAATCG
Found at i:7290 original size:21 final size:20
Alignment explanation
Indices: 7266--7311 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
7256 CTATTACATC
7266 ATTTTATCTAAGA-TATATATT
1 ATTTTATCTAA-ATTATAT-TT
*
7287 ATTTTATTTAAATTATATTT
1 ATTTTATCTAAATTATATTT
7307 ATTTT
1 ATTTT
7312 TCATAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
ATTTTATCTAAATTATATTT
Found at i:7857 original size:18 final size:18
Alignment explanation
Indices: 7812--7857 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
7802 CAACTTAATT
*
7812 TATATTATTTTAATTTAAA
1 TATA-TATTTTAATATAAA
* *
7831 GATAAATTTTAATATAAA
1 TATATATTTTAATATAAA
7849 TATATATTT
1 TATATATTT
7858 AGTATTATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TATATATTTTAATATAAA
Found at i:13813 original size:21 final size:22
Alignment explanation
Indices: 13770--13841 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 22
13760 TTTTGAAGAA
*
13770 ATATAAAATATCATTTAAA-TATT
1 ATAT-AAATAT-AATTAAATTATT
13793 ATATAAATAT-ATTAAATTATT
1 ATATAAATATAATTAAATTATT
* **
13814 AAATTTATATAATATAAATTATT
1 ATATAAATATAAT-TAAATTATT
13837 ATATA
1 ATATA
13842 TCAAAATTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 5 0.12
21 11 0.28
22 8 0.20
23 16 0.40
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATAAATATAATTAAATTATT
Found at i:13833 original size:15 final size:15
Alignment explanation
Indices: 13792--13861 Score: 51
Period size: 14 Copynumber: 4.8 Consensus size: 15
13782 ATTTAAATAT
* *
13792 TATATAAATATATTA
1 TATATATATAAATTA
*
13807 AAT-TAT-TAAATT-
1 TATATATATAAATTA
13819 TATATAATATAAATTA
1 TATAT-ATATAAATTA
13835 T-TATATATCAAAATTA
1 TATATATAT--AAATTA
13851 TATATAT-TAAA
1 TATATATATAAA
13862 ATTTTATGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
12 2 0.05
13 6 0.14
14 11 0.25
15 11 0.25
16 9 0.20
17 5 0.11
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (15 bp):
TATATATATAAATTA
Found at i:13840 original size:17 final size:17
Alignment explanation
Indices: 13788--13868 Score: 52
Period size: 15 Copynumber: 5.1 Consensus size: 17
13778 TATCATTTAA
*
13788 ATATTATATAAATATATT
1 ATATAATATAAAT-TATT
* *
13806 AAATTAT-TAAA-T-TT
1 ATATAATATAAATTATT
13820 ATATAATATAAATTATT
1 ATATAATATAAATTATT
13837 ATAT-ATCA-AAATTA-T
1 ATATAAT-ATAAATTATT
*
13852 ATATATTA-AAATT-TT
1 ATATAATATAAATTATT
13867 AT
1 AT
13869 GAGTGTTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
14 7 0.13
15 19 0.36
16 10 0.19
17 11 0.21
18 6 0.11
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATAATATAAATTATT
Found at i:13862 original size:15 final size:15
Alignment explanation
Indices: 13810--13864 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
13800 TATATTAAAT
13810 TATT-AAATT-TATA
1 TATTAAAATTATATA
*
13823 TAATATAAATTATTATA
1 TATTA-AAATTA-TATA
*
13840 TATCAAAATTATATA
1 TATTAAAATTATATA
13855 TATTAAAATT
1 TATTAAAATT
13865 TTATGAGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.09
15 18 0.53
16 6 0.18
17 7 0.21
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAAAATTATATA
Found at i:14038 original size:19 final size:22
Alignment explanation
Indices: 14016--14057 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14006 TTAAAATTAA
14016 TTTTAA-T-AGTTAA-ATTATT
1 TTTTAATTAAGTTAATATTATT
14035 TTTTAATTAAGTTAATATTATT
1 TTTTAATTAAGTTAATATTATT
14057 T
1 T
14058 AATTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 6 0.30
22 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTTAATTAAGTTAATATTATT
Found at i:14915 original size:18 final size:16
Alignment explanation
Indices: 14894--14932 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
14884 TATCTTTTTA
14894 TTTTTCTCTTTCTTCAAT
1 TTTTTCTC-TT-TTCAAT
*
14912 TTTTTGTCTTTTCAAT
1 TTTTTCTCTTTTCAAT
14928 TTTTT
1 TTTTT
14933 TTTTTACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 2 0.10
18 7 0.35
ACGTcount: A:0.10, C:0.15, G:0.03, T:0.72
Consensus pattern (16 bp):
TTTTTCTCTTTTCAAT
Found at i:16691 original size:2 final size:2
Alignment explanation
Indices: 16684--16714 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
16674 TGGCATACAA
16684 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16715 AATTGCCACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24657 original size:50 final size:51
Alignment explanation
Indices: 24529--24675 Score: 122
Period size: 50 Copynumber: 2.9 Consensus size: 51
24519 TCATACTCTT
* * *
24529 TTATTAGGTGCCAGCTTGAGTGGACTTTGGACTCTATAAGACTTTAGCCTC
1 TTATTAGGTGCTAGCATGTGTGGACTTTGGACTCTATAAGACTTTAGCCTC
* * * * *
24580 CTATTAGGTGCTA--ATTCATGTGAACTTT-GATTCTATAGGACTTTA-CCTTC
1 TTATTAGGTGCTAGCA-T-GTGTGGACTTTGGACTCTATAAGACTTTAGCC-TC
* ** * *
24630 TTATTAAGTGCTAGCATGTGTGGACTTTAAACTCTACAAGATTTTA
1 TTATTAGGTGCTAGCATGTGTGGACTTTGGACTCTATAAGACTTTA
24676 CTCTTCTATT
Statistics
Matches: 73, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
49 2 0.03
50 38 0.52
51 32 0.44
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (51 bp):
TTATTAGGTGCTAGCATGTGTGGACTTTGGACTCTATAAGACTTTAGCCTC
Found at i:24922 original size:112 final size:110
Alignment explanation
Indices: 24749--25050 Score: 299
Period size: 112 Copynumber: 2.7 Consensus size: 110
24739 CTAGTTTTCT
* ** * * *
24749 AGCATCATTAGGCTTACTTTTGATAGGGGCTAACTTTACTGAGCTTACTATATGGCTAGCTATAT
1 AGCATCATTGGGCTTACTTTTGATAAAGGCTAACTTCACTAAGCTTACCATAT-GCTAGCTATAT
* * *
24814 TGGGCTTAATTCTTGATAT-GGGCTAATTAGTCGA-AACTAGCCTA-C
65 TGGGCTTAATTCTTGATATAAGTC-AATTAG-CGAGAACTAACCTATC
* * * *
24859 TAGCGTTATTGGGCTTA-TTCATGTTATAAAGGC-AACTTCACTAAGCTTACCATATGACCAGCT
1 -AGCATCATTGGGCTTACTT--T-TGATAAAGGCTAACTTCACTAAGCTTACCATATG-CTAGCT
* * * *
24922 ATATCGAGCTTGATTCTTGATATAAGTCAATTAGCTAGAACTAACCTATC
61 ATATTGGGCTTAATTCTTGATATAAGTCAATTAGCGAGAACTAACCTATC
* * * *
24972 AGTATCATTGGGCTTACTTTTGGTAAAGGCTAACTTCACTAAGCTTACCACATGCTAGCTAAATT
1 AGCATCATTGGGCTTACTTTTGATAAAGGCTAACTTCACTAAGCTTACCATATGCTAGCTATATT
*
25037 GGGCTTAACTCTTG
66 GGGCTTAATTCTTG
25051 CAACCAATTA
Statistics
Matches: 153, Mismatches: 29, Indels: 19
0.76 0.14 0.09
Matches are distributed among these distances:
110 29 0.19
111 39 0.25
112 73 0.48
113 12 0.08
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (110 bp):
AGCATCATTGGGCTTACTTTTGATAAAGGCTAACTTCACTAAGCTTACCATATGCTAGCTATATT
GGGCTTAATTCTTGATATAAGTCAATTAGCGAGAACTAACCTATC
Done.