Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1959
Parameters: 2 7 7 80 10 50 1000
Length:  39625

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1496--1537
21
2.0
21
90
4
66
57
0
0
42
0.99
1707--1805
13
7.5
12
68
27
51
36
2
3
58
1.25
2135--2160
8
3.2
8
100
0
52
61
0
0
38
0.96
2374--2439
29
2.3
28
84
2
78
36
1
0
62
1.05
2402--2438
18
2.0
18
89
5
56
29
0
0
70
0.88
2540--2604
34
2.0
33
85
11
91
56
1
9
32
1.40
2620--2694
30
2.4
32
80
12
84
60
1
1
37
1.14
3220--3252
2
16.5
2
93
0
57
0
45
3
51
1.16
9935--10024
28
3.4
27
80
8
87
25
7
21
45
1.78
14507--14598
28
3.4
27
79
8
91
26
7
20
45
1.77
16342--16385
17
2.6
18
78
10
56
34
0
0
65
0.93
16369--16406
12
3.1
12
85
14
51
44
0
0
55
0.99
16369--16433
14
4.9
14
70
16
57
49
3
0
47
1.17
17488--17521
2
17.0
2
100
0
68
50
0
0
50
1.00
17704--17761
30
2.0
28
83
10
71
55
0
1
43
1.10
17748--17809
21
3.2
21
67
32
57
32
0
1
66
1.02
19409--19456
19
2.5
19
83
10
62
62
0
0
37
0.95
19478--19522
4
11.2
4
90
0
54
46
4
4
44
1.43
19478--19522
10
4.5
10
85
0
54
46
4
4
44
1.43
21866--21900
15
2.4
15
95
4
63
17
20
5
57
1.60
21928--21997
5
14.0
5
89
0
86
21
20
11
47
1.81
21928--21996
15
4.6
15
90
0
102
21
20
10
47
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21925--21997
20
3.7
20
90
0
119
20
19
10
49
1.78
23329--23359
16
2.0
15
93
6
53
77
3
0
19
0.90
30334--30400
33
2.0
33
88
0
98
34
11
13
40
1.81
30354--30378
13
1.9
13
100
0
50
36
16
16
32
1.90
30441--30465
13
1.9
13
100
0
50
32
16
16
36
1.90
38718--38785
19
3.9
19
78
21
85
35
11
14
38
1.83
38720--38782
32
2.0
32
96
0
117
34
12
15
36
1.86
38739--38763
13
1.9
13
100
0
50
36
16
16
32
1.90
38805--38859
20
2.8
19
78
8
65
23
12
16
47
1.81

Tables:   1

The End!