Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 13 of 47
Found at i:1762773 original size:28 final size:28
Alignment explanation
Indices: 1762708--1762803 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
1762698 TACGTGTAAA
* *
1762708 TAATAATTATAATATGATAATATA-ATTAT
1 TAATAATTATAAT-T-ATAATTTATTTTAT
* *
1762737 T-AT-TTTATAATTTTAATTT-TTTTAT
1 TAATAATTATAATTATAATTTATTTTAT
1762762 TAATTAATTATAATTATAATTTATTTTAT
1 TAA-TAATTATAATTATAATTTATTTTAT
*
1762791 TTATAATTATAAT
1 TAATAATTATAAT
1762804 AAATATGATA
Statistics
Matches: 55, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
25 10 0.18
26 2 0.04
27 8 0.15
28 26 0.47
29 9 0.16
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (28 bp):
TAATAATTATAATTATAATTTATTTTAT
Found at i:1768044 original size:97 final size:97
Alignment explanation
Indices: 1767876--1768057 Score: 222
Period size: 97 Copynumber: 1.9 Consensus size: 97
1767866 CCCCTTGGAT
* * * ** * **
1767876 GAATGGGGTTAGAGTGTCCATGACGATGACAATTTAGGTGAAAATAAGATTTAAATCTCGATTAA
1 GAATGGGGTTAGAGTATCCATGACGATGAAAATTTAAGCAAAAATAAGATCTAAATCTCGAACAA
1767941 AATAAAAACAGGGTTGGAGTGTCCTCTCGAAA
66 AATAAAAACAGGGTTGGAGTGTCCTCTCGAAA
* * *
1767973 GAATGGGGTTAGAGTATCCCTGATGATGAAAATTTAAGCAAAAATAAGATCTAAATCT-TAACAA
1 GAATGGGGTTAGAGTATCCATGACGATGAAAATTTAAGCAAAAATAAGATCTAAATCTCGAACAA
** *
1768037 GTTTAAAAATAGGGTTGGAGT
66 -AATAAAAACAGGGTTGGAGT
1768058 ATCCCCTCAG
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
96 3 0.04
97 67 0.96
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (97 bp):
GAATGGGGTTAGAGTATCCATGACGATGAAAATTTAAGCAAAAATAAGATCTAAATCTCGAACAA
AATAAAAACAGGGTTGGAGTGTCCTCTCGAAA
Found at i:1769934 original size:13 final size:13
Alignment explanation
Indices: 1769918--1769942 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1769908 AGGGTAGCTT
1769918 TGTATCGATACAG
1 TGTATCGATACAG
1769931 TGTATCGATACA
1 TGTATCGATACA
1769943 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1770321 original size:21 final size:21
Alignment explanation
Indices: 1770297--1770336 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1770287 TGTTTTTTTG
* *
1770297 TTTTTGTTGTTTTTTTTAAAA
1 TTTTTGATGATTTTTTTAAAA
1770318 TTTTTGATGATTTTTTTAA
1 TTTTTGATGATTTTTTTAA
1770337 CATAGGATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (21 bp):
TTTTTGATGATTTTTTTAAAA
Found at i:1772690 original size:13 final size:13
Alignment explanation
Indices: 1772672--1772696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1772662 CAATTTTTGG
1772672 TGTATCGATACAA
1 TGTATCGATACAA
1772685 TGTATCGATACA
1 TGTATCGATACA
1772697 TATTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1772712 original size:32 final size:33
Alignment explanation
Indices: 1772649--1772716 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1772639 CGTTACAAGC
*
1772649 CAATGTATCGATACAATTTTTGGTGTATCGATA
1 CAATGTATCGATACAATTTGTGGTGTATCGATA
1772682 CAATGTATCGATAC-ATATTGT-GTGTATCGATA
1 CAATGTATCGATACAAT-TTGTGGTGTATCGATA
1772714 CAA
1 CAA
1772717 ATTTGGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 16 0.48
33 17 0.52
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACAATTTGTGGTGTATCGATA
Found at i:1772795 original size:20 final size:21
Alignment explanation
Indices: 1772748--1772800 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
1772738 GCCAATGACC
**
1772748 TGTATCGATACATGTTTTTCA
1 TGTATCGATACATGTTGGTCA
*
1772769 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATGTTGGTCA
1772789 TGTATCGATACA
1 TGTATCGATACA
1772801 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATGTTGGTCA
Found at i:1772806 original size:13 final size:13
Alignment explanation
Indices: 1772788--1772816 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1772778 ACATTTGGTC
1772788 ATGTATCGATACA
1 ATGTATCGATACA
1772801 ATGTATCGATACA
1 ATGTATCGATACA
1772814 ATG
1 ATG
1772817 CAATCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1772827 original size:20 final size:20
Alignment explanation
Indices: 1772802--1772852 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1772792 ATCGATACAA
*
1772802 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
1772822 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
1772842 TGTATCGATAC
1 TGTATCGATAC
1772853 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:1773308 original size:20 final size:18
Alignment explanation
Indices: 1773283--1773338 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 18
1773273 ACTGCTAAGG
1773283 AAATGTATCGATACATTAAT
1 AAATGTATCGATACATT--T
*
1773303 AAATGTATCTATACATTT
1 AAATGTATCGATACATTT
1773321 AACATTGTATCGATACAT
1 AA-A-TGTATCGATACAT
1773339 CTGGATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 3 0.09
19 1 0.03
20 28 0.88
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (18 bp):
AAATGTATCGATACATTT
Found at i:1773372 original size:20 final size:20
Alignment explanation
Indices: 1773347--1773387 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1773337 ATCTGGATTT
1773347 TTTATCAAATGTAT-GATACA
1 TTTATC-AATGTATCGATACA
*
1773367 TTTATCATTGTATCGATACA
1 TTTATCAATGTATCGATACA
1773387 T
1 T
1773388 CTGGGTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (20 bp):
TTTATCAATGTATCGATACA
Found at i:1773376 original size:49 final size:51
Alignment explanation
Indices: 1773303--1773438 Score: 170
Period size: 49 Copynumber: 2.7 Consensus size: 51
1773293 ATACATTAAT
* * * *
1773303 AAATGTATCTATACATTTAACATTGTATCGATACATCTGGATTTTTTA-TC
1 AAATGTATCGATACATTTATCATTGTATCGATACATCTGGATATTTTACCC
*
1773353 AAATGTAT-GATACATTTATCATTGTATCGATACATCTGGGTATTTTACCC
1 AAATGTATCGATACATTTATCATTGTATCGATACATCTGGATATTTTACCC
* * *
1773403 ATATGTATCGATACA-TTATTTAATGTATCGATACAT
1 AAATGTATCGATACATTTA-TCATTGTATCGATACAT
1773439 GCACACAAAT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
49 35 0.47
50 19 0.25
51 21 0.28
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (51 bp):
AAATGTATCGATACATTTATCATTGTATCGATACATCTGGATATTTTACCC
Found at i:1775049 original size:22 final size:23
Alignment explanation
Indices: 1775016--1775060 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
1775006 TGCAGGCCCA
1775016 CTAGACGATTTT-TAAAAATGTT
1 CTAGACGATTTTCTAAAAATGTT
1775038 CTAGAC-ATTTTTCCTAAAAATGT
1 CTAGACGA-TTTT-CTAAAAATGT
1775061 CATGAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 1 0.05
22 10 0.50
24 9 0.45
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (23 bp):
CTAGACGATTTTCTAAAAATGTT
Found at i:1779005 original size:21 final size:21
Alignment explanation
Indices: 1778981--1779041 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
1778971 TGATGTGAAA
1778981 TTGAAGAAATTTGAGAAAGAT
1 TTGAAGAAATTTGAGAAAGAT
*
1779002 TTGAAGAAATTTAAGAAAGAT
1 TTGAAGAAATTTGAGAAAGAT
1779023 TTGAAGAAATTTGATGAAA
1 TTGAAGAAATTTGA-GAAA
1779042 AATTATTACG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
21 33 0.89
22 4 0.11
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.30
Consensus pattern (21 bp):
TTGAAGAAATTTGAGAAAGAT
Found at i:1779013 original size:10 final size:10
Alignment explanation
Indices: 1778977--1779041 Score: 64
Period size: 10 Copynumber: 6.4 Consensus size: 10
1778967 GTTTTGATGT
1778977 GAAA-TTGAA
1 GAAATTTGAA
1778986 GAAATTTG-A
1 GAAATTTGAA
1778995 GAAAGATTTGAA
1 G-AA-ATTTGAA
1779007 GAAATTT-AA
1 GAAATTTGAA
1779016 GAAAGATTTGAA
1 G-AA-ATTTGAA
*
1779028 GAAATTTGAT
1 GAAATTTGAA
1779038 GAAA
1 GAAA
1779042 AATTATTACG
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
9 9 0.19
10 21 0.44
11 13 0.27
12 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.28
Consensus pattern (10 bp):
GAAATTTGAA
Found at i:1783642 original size:15 final size:15
Alignment explanation
Indices: 1783622--1783652 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1783612 TCCGAGTCAA
1783622 CATCATCTTCATCAT
1 CATCATCTTCATCAT
1783637 CATCATCTTCATCAT
1 CATCATCTTCATCAT
1783652 C
1 C
1783653 TTTGATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (15 bp):
CATCATCTTCATCAT
Found at i:1785273 original size:20 final size:20
Alignment explanation
Indices: 1785248--1785298 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
1785238 GTTTGAAAAT
1785248 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
1785268 ATGTATTGATACAATTCATC
1 ATGTATCGATACAATTCATC
1785288 ATGTATCGATA
1 ATGTATCGATA
1785299 TATTGTATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:1785387 original size:19 final size:20
Alignment explanation
Indices: 1785343--1785398 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
1785333 TTGCCAGTTT
* *
1785343 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGATA
*
1785363 CATGTATCGTTACAATGA-A
1 CATGTATCGATACAATGATA
1785382 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1785399 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:1785401 original size:13 final size:13
Alignment explanation
Indices: 1785383--1785409 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1785373 TACAATGAAC
1785383 ATGTATCGATACA
1 ATGTATCGATACA
1785396 ATGTATCGATACA
1 ATGTATCGATACA
1785409 A
1 A
1785410 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1788258 original size:79 final size:79
Alignment explanation
Indices: 1788175--1788347 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 79
1788165 AGATAAAGAT
* ** *
1788175 GGGGTTGGAGTATCCCT-TC-AGAAATAACAAGGTTGGAGTATCCTTGATTGTGAAAAATCAGTG
1 GGGGTTGGAGTATCCCTCTCGA-AAATAACAAGGTTGGAATATCCCCGATTATGAAAAATCA-TG
*
1788238 TT-TTGAAAATAAAACC
64 TTCTAG-AAATAAAACC
** * *
1788254 GGGGTTGGAGTAT-CCTCTCGAAAATAACGGGGTTGGAATATCCCCGATTATGAAAATTGATGTT
1 GGGGTTGGAGTATCCCTCTCGAAAATAACAAGGTTGGAATATCCCCGATTATGAAAAATCATGTT
**
1788318 CTAGAAATAAAATT
66 CTAGAAATAAAACC
1788332 GGGGTTGGAGTATCCC
1 GGGGTTGGAGTATCCC
1788348 CGATGGTGGA
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 28 0.35
79 50 0.63
80 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCTCTCGAAAATAACAAGGTTGGAATATCCCCGATTATGAAAAATCATGTT
CTAGAAATAAAACC
Found at i:1788347 original size:50 final size:51
Alignment explanation
Indices: 1788281--1788395 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
1788271 TCGAAAATAA
* * *
1788281 CGGGGTTGGAATATCCCCGATTAT-GAAAATTGATGTTCTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATGATGGAAAATTGATGTCCTAGAAATAAAAT
* * *
1788331 TGGGGTTGGAGTATCCCCGATGGTGGAAAATTGGTGTCCTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATGATGGAAAATTGATGTCCTAGAAATAAAAT
*
1788382 CAGGGTTGGAGTAT
1 CGGGGTTGGAGTAT
1788396 TCCCTTGAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 20 0.36
51 36 0.64
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATGATGGAAAATTGATGTCCTAGAAATAAAAT
Found at i:1788455 original size:129 final size:129
Alignment explanation
Indices: 1788244--1788477 Score: 287
Period size: 129 Copynumber: 1.8 Consensus size: 129
1788234 AGTGTTTTGA
* *
1788244 AAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTGGAATATCCCCGATTATGAAA
1 AAATAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTGGAACATCCCCGATTATGAAA
* ** * *
1788309 ATTGATGTTCTAGAAATAAAATTGGGGTTGGAGTATCCCCGATGGTGGAAAATTGGTGTCCTAG
66 ATAGATGTTCTAGAAATAAAACCGAGGTTAGAGTATCCCCGATGGTGGAAAATTGGTGTCCTAG
* * * * *
1788373 AAATAAAATCAGGGTTGGAGTATTCC-CTTGAAAATAACGTGG-TGGAGCATCCTCGATTATCGA
1 AAATAAAACCAGGGTTGGAGTA-TCCTCTCGAAAATAACGGGGTTGGAACATCCCCGATTAT-GA
*
1788436 AAATCAG-TGTT-TTGAAAATAAAACCGAGGTTAGAGTATCCCC
64 AAAT-AGATGTTCTAG-AAATAAAACCGAGGTTAGAGTATCCCC
1788478 TCAGAAATAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
128 17 0.19
129 67 0.76
130 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (129 bp):
AAATAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTGGAACATCCCCGATTATGAAA
ATAGATGTTCTAGAAATAAAACCGAGGTTAGAGTATCCCCGATGGTGGAAAATTGGTGTCCTAG
Found at i:1788497 original size:157 final size:158
Alignment explanation
Indices: 1788332--1788637 Score: 366
Period size: 157 Copynumber: 1.9 Consensus size: 158
1788322 AAATAAAATT
* * *
1788332 GGGGTTGGAGTATCCCCGATGGTGGAAAATTGGTGTCCTAGAAATAAAATCAG-GGTTGGAGTAT
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTAGTGTCCTAGAAATAAAA-CAGAGGTTGGAGTAT
* ** * * *
1788396 TCCCTTGAAAATAACGTGG-TGGAGCATC-CTCGATTATCGAAAATCAGTGTTTTGAAAATAAAA
65 CCCCTCAAAAATAACGGGGTTGGAACATCTC-CGATTATCGAAAATCAGTGTTTTAAAAATAAAA
*
1788459 CCGAGGTTAGAGTATCCCCTCAGAAATAAC
129 CCGAGATTAGAGTATCCCCTCAGAAATAAC
* * ** *
1788489 GGGGTTGGAGTATCTCCAATTGTGAAAAATTAGTGTTTTAGAAATAAAACTGAGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTAGTGTCCTAGAAATAAAACAGAGGTTGGAGTATC
* * * ** *
1788554 CCCTCAAAAATAACGGGGTTGGAATATCTCCGATTGTGGAAAATTGGTGTTTTAAAAATAAAATC
66 CCCTCAAAAATAACGGGGTTGGAACATCTCCGATTATCGAAAATCAGTGTTTTAAAAATAAAACC
* *
1788619 GAGATTGGAGTATCGCCTC
131 GAGATTAGAGTATCCCCTC
1788638 GGAAGTAAAA
Statistics
Matches: 123, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
156 2 0.02
157 68 0.55
158 52 0.42
159 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (158 bp):
GGGGTTGGAGTATCCCCAATGGTGAAAAATTAGTGTCCTAGAAATAAAACAGAGGTTGGAGTATC
CCCTCAAAAATAACGGGGTTGGAACATCTCCGATTATCGAAAATCAGTGTTTTAAAAATAAAACC
GAGATTAGAGTATCCCCTCAGAAATAAC
Found at i:1788536 original size:79 final size:79
Alignment explanation
Indices: 1788332--1788637 Score: 325
Period size: 79 Copynumber: 3.9 Consensus size: 79
1788322 AAATAAAATT
* * * ** *
1788332 GGGGTTGGAGTATCCCCGATGGTGGAAAATTGGTGTCCTAGAAATAAAATC-AGGGTTGGAGTAT
1 GGGGTTGGAGTATCTCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGA-GGTTGGAGTAT
* *
1788396 TCCCT-TGAAAATAAC
65 CCCCTCAG-AAATAAC
* * * * * *
1788411 GTGG-TGGAGCATC-CTCGATTATCGAAAATCAGTGTTTT-GAAAATAAAACCGAGGTTAGAGTA
1 GGGGTTGGAGTATCTC-CGATTGTGGAAAATTAGTGTTTTAG-AAATAAAACCGAGGTTGGAGTA
1788473 TCCCCTCAGAAATAAC
64 TCCCCTCAGAAATAAC
* * *
1788489 GGGGTTGGAGTATCTCCAATTGTGAAAAATTAGTGTTTTAGAAATAAAACTGAGGTTGGAGTATC
1 GGGGTTGGAGTATCTCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGAGGTTGGAGTATC
*
1788554 CCCTCAAAAATAAC
66 CCCTCAGAAATAAC
* * * * *
1788568 GGGGTTGGAATATCTCCGATTGTGGAAAATTGGTGTTTTAAAAATAAAATCGAGATTGGAGTATC
1 GGGGTTGGAGTATCTCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGAGGTTGGAGTATC
*
1788633 GCCTC
66 CCCTC
1788638 GGAAGTAAAA
Statistics
Matches: 188, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
77 2 0.01
78 57 0.30
79 127 0.68
80 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
GGGGTTGGAGTATCTCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGAGGTTGGAGTATC
CCCTCAGAAATAAC
Found at i:1791707 original size:33 final size:34
Alignment explanation
Indices: 1791642--1791723 Score: 112
Period size: 33 Copynumber: 2.4 Consensus size: 34
1791632 CTTACTTTTT
* *
1791642 GAGGATAAAGGAAAAGGAGTACATCCTGCTCTTC
1 GAGGACAAAGGAAAAAGAGTACATCCTGCTCTTC
**
1791676 GAGGACAAAGGAAAAAGAGT-TGTCCTGCTCTTC
1 GAGGACAAAGGAAAAAGAGTACATCCTGCTCTTC
*
1791709 AAGGACAAAGGAAAA
1 GAGGACAAAGGAAAA
1791724 GAGAATGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 25 0.58
34 18 0.42
ACGTcount: A:0.40, C:0.16, G:0.27, T:0.17
Consensus pattern (34 bp):
GAGGACAAAGGAAAAAGAGTACATCCTGCTCTTC
Found at i:1791783 original size:42 final size:42
Alignment explanation
Indices: 1791696--1791814 Score: 136
Period size: 42 Copynumber: 2.9 Consensus size: 42
1791686 GAAAAAGAGT
* * *
1791696 TGTCCTGCT-CTTCAAGGACAAAGGAAAAGA-G-AATGAAATG
1 TGTCCTGCTCCTT-GAGGACAAAGGAAAAAAGGAAATAAAATG
*
1791736 GGTCCTGCTCCTTGAGGACAAAGGAAAAAAGGAAATAAAATG
1 TGTCCTGCTCCTTGAGGACAAAGGAAAAAAGGAAATAAAATG
* * *
1791778 TGTCCTACTCTTTGAGGATAAAGGAAAAAAAGGAAAT
1 TGTCCTGCTCCTTGAGGACAAAGG-AAAAAAGGAAAT
1791815 TAAAGTGCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
40 23 0.34
41 4 0.06
42 28 0.42
43 12 0.18
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (42 bp):
TGTCCTGCTCCTTGAGGACAAAGGAAAAAAGGAAATAAAATG
Found at i:1791835 original size:44 final size:42
Alignment explanation
Indices: 1791696--1791840 Score: 125
Period size: 42 Copynumber: 3.5 Consensus size: 42
1791686 GAAAAAGAGT
* ** * *
1791696 TGTCCTGCTCTTCAAGGACAAAGGAAAAGA-G-AATGAAATG
1 TGTCATGCTCTTTGAGGACAAAGGAAAAAAGGAAATAAAATG
* * *
1791736 GGTCCTGCTCCTTGAGGACAAAGGAAAAAAGGAAATAAAATG
1 TGTCATGCTCTTTGAGGACAAAGGAAAAAAGGAAATAAAATG
* * * *
1791778 TGTCCTACTCTTTGAGGATAAAGGAAAAAAAGGAAATTAAA-G
1 TGTCATGCTCTTTGAGGACAAAGG-AAAAAAGGAAATAAAATG
*
1791820 TGCATCATGCTCTTTGGGGAC
1 TG--TCATGCTCTTTGAGGAC
1791841 TAGAAGGTGC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
40 25 0.29
41 1 0.01
42 31 0.36
43 15 0.18
44 13 0.15
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (42 bp):
TGTCATGCTCTTTGAGGACAAAGGAAAAAAGGAAATAAAATG
Found at i:1791916 original size:61 final size:59
Alignment explanation
Indices: 1791821--1792276 Score: 516
Period size: 61 Copynumber: 7.5 Consensus size: 59
1791811 AAATTAAAGT
* * **
1791821 GCATCATGCTCTTTGGGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAA
1 GCATCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAA
* * *
1791882 GCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAGCTCGTGTAGGCTTTAAAAGGAAAAA
1 GCATCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAA
** * *
1791943 GTGTCCTGCTCTTTGTGGACTGAAAGATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
1 GCATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * *** * *
1792003 GGCGTCCTACTCTTTGAGGACTAAAAAAGCTACCAACTTGTGTGGGATTTAAAAGGAAAA
1 -GCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * *
1792063 GGCATCCTGCTATTTGAGGACTGAAAGGTGCTACCAACTTGTGTGGGCTTTAAAATGAAAA
1 -GCATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * *
1792124 GACGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAATGAAAA
1 G-CATCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * *
1792185 GACGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGGAAAT
1 G-C--ATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
1792248 GACATCCTGCTCTTTGAGGACTAGAAGGT
1 G-CATCCTGCTCTTTGAGGACTA-AAGGT
1792277 TAAAAGGTTT
Statistics
Matches: 344, Mismatches: 40, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
60 62 0.18
61 223 0.65
62 4 0.01
63 54 0.16
64 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (59 bp):
GCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
Found at i:1792072 original size:182 final size:184
Alignment explanation
Indices: 1791829--1792275 Score: 573
Period size: 182 Copynumber: 2.4 Consensus size: 184
1791819 GTGCATCATG
* * ** **
1791829 CTCTTTGGGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAA-GCATCCTGCTC
1 CTCTTTGAGGACTAAAAGAAGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTC
* *
1791893 TTTGAGGACTAAAGGGTGCCACCAGCTCGTGTAGGCTTTAAAAGGAAAA-AGTGTCCTGCTCTTT
65 TTTGAGGACTAAAGGGTGCCACCAACTCGTGTAGGCTTTAAAAGGAAAAGA-CGTCCTGCTCTTT
* *
1791957 GTGGACT-GAAAGATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG-GCGTCCTA
129 GAGGACTAG-AAGATGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGAGCGTCCTA
* * *
1792012 CTCTTTGAGGACTAAAA-AAGCTACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTAT
1 CTCTTTGAGGACTAAAAGAAGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCT
* * * *
1792076 TTGAGGACTGAAA-GGTGCTACCAACTTGTGTGGGCTTTAAAATGAAAAGACGTCCTGCTCTTTG
66 TTGAGGACT-AAAGGGTGCCACCAACTCGTGTAGGCTTTAAAAGGAAAAGACGTCCTGCTCTTTG
* * *
1792140 AGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAATGAAAAGACGTGTCCTA
130 AGGACTAGAAGATGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGA-GCGTCCTA
** * * *
1792196 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGGAAATGACATCCTGCTCT
1 CTCTTTGAGGACTAAAAGAAGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCT
1792261 TTGAGGACTAGAAGG
66 TTGAGGACTA-AAGG
1792276 TTAAAAGGTT
Statistics
Matches: 227, Mismatches: 28, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
181 3 0.01
182 128 0.56
183 20 0.09
184 25 0.11
185 50 0.22
186 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (184 bp):
CTCTTTGAGGACTAAAAGAAGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCT
TTGAGGACTAAAGGGTGCCACCAACTCGTGTAGGCTTTAAAAGGAAAAGACGTCCTGCTCTTTGA
GGACTAGAAGATGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGAGCGTCCTA
Found at i:1792108 original size:121 final size:122
Alignment explanation
Indices: 1791816--1792276 Score: 552
Period size: 121 Copynumber: 3.8 Consensus size: 122
1791806 AAAGGAAATT
* * * **
1791816 AAAGTGCATCATGCTCTTTGGGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGA
1 AAAGAGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-A
* * *
1791880 AAG-CATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAGCTCGTGTAGGCTTTAAAAGGA
64 AAGACATCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
** * *
1791939 AAA-AGTGTCCTGCTCTTTGTGGACTGAAAGATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
1 AAAGAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * *** * *
1792003 GGCGTCCTACTCTTTGAGGACTAAAAAAGCTACCAACTTGTGTGGGATTTAAAAGGA
66 GACATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * *
1792060 AAAG-GCATCCTGCTATTTGAGGACTGAAAGGTGCTACCAACTTGTGTGGGCTTTAAAATGAAAA
1 AAAGAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * *
1792124 GACGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAATGA
66 GACATCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
** * * *
1792182 AAAGACGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGGAAA
1 AAAGA-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
*
1792247 TGACATCCTGCTCTTTGAGGACTAGAAGGT
65 AGACATCCTGCTCTTTGAGGACTA-AAGGT
1792277 TAAAAGGTTT
Statistics
Matches: 288, Mismatches: 44, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
121 105 0.36
122 100 0.35
123 4 0.01
124 79 0.27
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (122 bp):
AAAGAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
GACATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
Found at i:1802151 original size:29 final size:29
Alignment explanation
Indices: 1802109--1802166 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
1802099 TGCAGTGTGT
1802109 TTGTTTCCATGCACAGAAAGCTAGATGGA
1 TTGTTTCCATGCACAGAAAGCTAGATGGA
* *
1802138 TTGTTTCCATGCACGGAAAGCTAGCTGGA
1 TTGTTTCCATGCACAGAAAGCTAGATGGA
1802167 ACTTCAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (29 bp):
TTGTTTCCATGCACAGAAAGCTAGATGGA
Found at i:1805884 original size:8 final size:8
Alignment explanation
Indices: 1805871--1805896 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1805861 CAAATCACTA
1805871 TGCTGATT
1 TGCTGATT
1805879 TGCTGATT
1 TGCTGATT
1805887 TGCTGATT
1 TGCTGATT
1805895 TG
1 TG
1805897 GAGTGGCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.27, T:0.50
Consensus pattern (8 bp):
TGCTGATT
Found at i:1806587 original size:52 final size:52
Alignment explanation
Indices: 1806506--1806626 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1806496 TGAAAAGTTA
*
1806506 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
1806558 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1806610 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1806627 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1806639 original size:52 final size:51
Alignment explanation
Indices: 1806506--1806646 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
1806496 TGAAAAGTTA
1806506 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
1806558 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
1806610 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1806647 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1806653 original size:13 final size:13
Alignment explanation
Indices: 1806635--1806659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1806625 CAAAGATCAG
1806635 TGTATCGATACAA
1 TGTATCGATACAA
1806648 TGTATCGATACA
1 TGTATCGATACA
1806660 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1807857 original size:49 final size:49
Alignment explanation
Indices: 1807638--1808546 Score: 1111
Period size: 49 Copynumber: 18.9 Consensus size: 49
1807628 AGATGATGAA
* * *
1807638 AAAGGATGTCAATGTGATGATTCAAGGCCAGCTACATTGAACTTAAAGAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * *
1807688 GGAAAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* *
1807734 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAATGGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
** *
1807783 -GGGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * *
1807831 AAAGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * * *
1807880 GAAGGTGCCAATGTGTTGAGTCAAGGCCAACTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
*
1807929 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* *
1807978 GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* *
1808027 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A-AT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
*
1808073 ---GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA-AGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-T
* *
1808119 -GAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * * *
1808167 GAAGGTGCCAATATGCTGATACAAGGCCAGCTATATTGGACTT--A-AT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
*
1808213 ---GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA-AGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-T
* *
1808259 -GAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * * *
1808307 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* *
1808356 GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* *
1808405 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1808451 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
* * *
1808500 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1808547 GAAGGGTTGC
Statistics
Matches: 755, Mismatches: 68, Indels: 67
0.85 0.08 0.08
Matches are distributed among these distances:
43 150 0.20
44 2 0.00
45 4 0.01
46 8 0.01
47 2 0.00
48 131 0.17
49 343 0.45
51 2 0.00
52 108 0.14
53 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
Found at i:1808165 original size:140 final size:143
Alignment explanation
Indices: 1807647--1808495 Score: 1094
Period size: 140 Copynumber: 6.0 Consensus size: 143
1807637 AAAAGGATGT
* * * * *
1807647 CAATGTGATGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG--AAGGTGCCAATATGCTGAGT
* *
1807712 CAAGGCCAGCTATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
64 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATT
*
1807771 GGACTTAATGGTGGGGTGC
129 GGACTTAA---T-AGGTGC
* * * * *
1807790 CAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAGGTGCCAATATACTGATTCA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGTGCCAATATGCTGAGTCA
* * * * * *
1807854 AGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAACTACATTGG
66 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGG
1807919 ACTTAAAGATAAAGGTGC
131 ACTT--A-AT--AGGTGC
*
1807937 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGGTGCCAATGTGCTGAGTCA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGTGCCAATATGCTGAGTCA
*
1808001 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGG
1808066 ACTTAAT-GGTGC
131 ACTTAATAGGTGC
*
1808078 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA-A-GTG-AGGTGCCAATGTGCTGAGTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-GAAGGTGCCAATATGCTGAGTC
* * *
1808140 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATACAAGGCCAGCTATATTG
65 AAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTG
1808205 GACTTAAT-GGTGC
130 GACTTAATAGGTGC
*
1808218 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA-A-GTG-AGGTGCCAATGTGCTGAGTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-GAAGGTGCCAATATGCTGAGTC
*
1808280 AAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
65 AAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTG
1808345 GACTTAATGGTGAAGGTGC
130 GACTTAA---T--AGGTGC
*
1808364 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG--AAGGTGCCAATATGCTGAGT
* *
1808429 CAAGGCCAGCTATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
64 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATT
1808488 GGACTTAA
129 GGACTTAA
1808496 AGATGGAAAA
Statistics
Matches: 649, Mismatches: 34, Indels: 45
0.89 0.05 0.06
Matches are distributed among these distances:
140 267 0.41
141 45 0.07
143 39 0.06
144 46 0.07
145 1 0.00
146 84 0.13
147 127 0.20
148 2 0.00
149 2 0.00
150 36 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (143 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGTGCCAATATGCTGAGTCA
AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGG
ACTTAATAGGTGC
Found at i:1808379 original size:476 final size:474
Alignment explanation
Indices: 1807647--1808546 Score: 1475
Period size: 476 Copynumber: 1.9 Consensus size: 474
1807637 AAAAGGATGT
* * *
1807647 CAATGTGATGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGATGAGTCAAGGCCAGCTACATTGAACTTAAAGATGG-AAAGGTGCCAATATGCTGATA
*
1807712 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
65 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
** * *
1807777 AATGGTGGGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
130 AAAAGTGAGGTGCCAATGTGCTAAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
*
1807842 TATACTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGTTGAGTCAAGGC
195 TATACTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGC
*
1807907 CAACTACATTGGACTTAAAGAT-AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACT
260 CAACTACATTGGACTTAAAGATGAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACT
1807971 TAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAGGTGC
325 T----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGC
1808035 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAG
384 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAG
1808100 CTACATTGGACTTAAAAGTGAGGTGC
449 CTACATTGGACTTAAAAGTGAGGTGC
* *
1808126 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AAGGTGCCAATATGCTGATAC
1 CAATGTGATGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGGTGCCAATATGCTGATAC
*
1808189 AAGGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
66 AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
*
1808254 AAAGTGAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
131 AAAGTGAGGTGCCAATGTGCTAAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
* * *
1808319 ATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCC
196 ATACTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCC
* * *
1808384 AGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC
261 AACTACATTGGACTTAAAGAT-G-AAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGAC
*
1808449 TTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAA
324 TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AAAGGTGCCAA
*
1808514 TATGCTGATTCAAGGCCAGCTATATTGGGCTTA
387 TATGCTGATTCAAGGCCAGCTATATTGGACTTA
1808547 GAAGGGTTGC
Statistics
Matches: 393, Mismatches: 22, Indels: 15
0.91 0.05 0.03
Matches are distributed among these distances:
473 47 0.12
475 1 0.00
476 266 0.68
478 1 0.00
479 78 0.20
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (474 bp):
CAATGTGATGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGGTGCCAATATGCTGATAC
AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
AAAGTGAGGTGCCAATGTGCTAAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
ATACTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCC
AACTACATTGGACTTAAAGATGAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGCCAATATG
CTGATTCAAGGCCAGCTATATTGGACTTAATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATT
GGACTTAAAAGTGAGGTGC
Found at i:1808590 original size:34 final size:34
Alignment explanation
Indices: 1808546--1808610 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
1808536 TATTGGGCTT
*
1808546 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
1 AGAAGAGTTGCCACCGACTTGTGTGGGCTTTGGA
1808580 AGAAGAGTTGCCACCGACTTGTGTGGGCTTT
1 AGAAGAGTTGCCACCGACTTGTGTGGGCTTT
1808611 AGAAAGGGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.28
Consensus pattern (34 bp):
AGAAGAGTTGCCACCGACTTGTGTGGGCTTTGGA
Found at i:1808674 original size:35 final size:34
Alignment explanation
Indices: 1808601--1809201 Score: 766
Period size: 34 Copynumber: 17.3 Consensus size: 34
1808591 CACCGACTTG
* *
1808601 TGTGGGCTTTAGAAAGGGAGAAAGATGCCACGGAGT
1 TGTGGGCTTTA-AAA-GGAAAAAGGTGCCACGGAGT
* *
1808637 TGTGGAC-TTAAAAGGGAAAAAGAGTACCACGGAGT
1 TGTGGGCTTTAAAA-GGAAAAAG-GTGCCACGGAGT
*
1808672 TGTGGGCTTTAAAAGGAAAAAGGCGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
1808706 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
* *
1808743 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGAAAAAG-GTGCCACGGAGT
*
1808778 TGTGGGCTTCAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
1808811 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
* *
1808848 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGAAAAAG-GTGCCACGGAGT
1808883 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
*
1808917 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
1808951 TGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
* *
1808988 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGAAAAAG-GTGCCACGGAGT
*
1809023 TGTGGGCTTTAAACAGAAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
*
1809058 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* * *
1809092 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
*
1809126 TGTGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGGTGCCACGGAGT
* *
1809160 TGTGGGCTTT-AAAGG-AAAAGGTGCCACGAAGC
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
1809192 TGTGGGCTTT
1 TGTGGGCTTT
1809202 GAAGAAAAAA
Statistics
Matches: 508, Mismatches: 38, Indels: 42
0.86 0.06 0.07
Matches are distributed among these distances:
32 27 0.05
33 27 0.05
34 171 0.34
35 163 0.32
36 57 0.11
37 63 0.12
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
Found at i:1808810 original size:105 final size:101
Alignment explanation
Indices: 1808601--1809234 Score: 769
Period size: 105 Copynumber: 6.1 Consensus size: 101
1808591 CACCGACTTG
* * * * * *
1808601 TGTGGGCTTTAGAAAGGGAGAAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTACC
1 TGTGGGCTTT-GAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-GTGCC
*
1808665 ACGGAGTTGTGGGCTTTAAAAGGAAAAAGGCGCCACGGAGT
63 ACGGAGTTGTGGGC-TTAAAA-GAAAAAGGTGCCACGGAGT
*
1808706 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTTGAAAA-GGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCC
*
1808771 ACAGAGTTGTGGGCTTCAAAAGAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGCTT-AAAAGAAAAAGGTGCCACGGAGT
1808811 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTTGAAAA-GGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCC
*
1808876 ACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGT
63 ACGGAGTTGTGGGC-TTAAA-AGAAAAAGGTGCCACGGAGT
* * *
1808917 TGTGGGCTTT-AAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTGAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAG-GTGCC
*
1808981 ACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGT
63 ACGGAGTTGTGGGC-TT-AAAAGAAAAAG-GTGCCACGGAGT
*
1809023 TGTGGGCTTT-AAACAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTGAAA-AGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
* *
1809087 GGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGT
65 GGAGTTGTGGGCTTAAA-A-GAAAAAGGTGCCACGGAGT
* *
1809126 TGTGGGCTTTGAAAA-GAAGAAGGTGCCACGGAGTTGTGGGCTTT--AAAGGAAAAGGTGCCACG
1 TGTGGGCTTTGAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
* * ** * *
1809188 AAGCTGTGGGCTTTGAAGAAAAA-ATGCCACTGAGT
66 GAGTTGTGGGCTTAAAAGAAAAAGGTGCCACGGAGT
* *
1809223 CGTGGACTTTGA
1 TGTGGGCTTTGA
1809235 GACAAAATGC
Statistics
Matches: 479, Mismatches: 36, Indels: 36
0.87 0.07 0.07
Matches are distributed among these distances:
97 20 0.04
98 6 0.01
99 1 0.00
100 28 0.06
102 30 0.06
103 46 0.10
104 42 0.09
105 165 0.34
106 107 0.22
107 34 0.07
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (101 bp):
TGTGGGCTTTGAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
GAGTTGTGGGCTTAAAAGAAAAAGGTGCCACGGAGT
Found at i:1808891 original size:140 final size:138
Alignment explanation
Indices: 1808601--1809234 Score: 831
Period size: 140 Copynumber: 4.6 Consensus size: 138
1808591 CACCGACTTG
* * * * *
1808601 TGTGGGCTTTAGAAAGGGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTACCA
1 TGTGGGCTTTA-AAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA--GAAAAAG-GTGCCA
* * *
1808666 CGGAGTTGTGGGCTTT-AAAA-GGAAAAAG-GCGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAA
61 CGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAA
*
1808728 AGAGTGCCACAGAGT
124 AGTGTGCCACAGAGT
*
1808743 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTCAAAAGAAAAAGGTGCCACGG
1 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGGCTT-AAAAGAAAAAGGTGCCACGG
*
1808808 AGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGT
64 AGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGT
1808873 GCCACAGAGT
129 GCCACAGAGT
*
1808883 TGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGG
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGGTGCCACGG
1808948 AGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGT
64 AGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGT
1809013 GCCACAGAGT
129 GCCACAGAGT
*
1809023 TGTGGGCTTTAAACAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
1 TGTGGGCTTTAAAAAG-AAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGGTGCCACG
* * *
1809088 GAGTTGTGGAC-TT--AAAGATGAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAG-
63 GAGTTGTGGACTTTGAAAAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGT
*
1809148 GTGCCACGGAGT
127 GTGCCACAGAGT
* * * ** * *
1809160 TGTGGGCTTT--AAAGGAAAAGGTGCCACGAAGCTGTGGGCTTTGAAGAAAAA-ATGCCACTGAG
1 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACGGAG
*
1809222 TCGTGGACTTTGA
66 TTGTGGACTTTGA
1809235 GACAAAATGC
Statistics
Matches: 455, Mismatches: 26, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
131 16 0.04
132 10 0.02
133 2 0.00
134 22 0.05
135 3 0.01
137 21 0.05
138 37 0.08
139 45 0.10
140 171 0.38
141 92 0.20
142 36 0.08
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (138 bp):
TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACGGAG
TTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGC
CACAGAGT
Found at i:1809216 original size:31 final size:31
Alignment explanation
Indices: 1808625--1809296 Score: 349
Period size: 34 Copynumber: 19.8 Consensus size: 31
1808615 AGGGAGAAAG
* **
1808625 ATGCCACGGAGTTGTGGACTTAAAAGGGAAAAA
1 ATGCCACGGAGTTGTGGGCTTTGAA--GAAAAA
* *
1808658 GAGTACCACGGAGTTGTGGGCTTTAAAAGGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT-GAA-GAAAAA
**
1808693 GGCGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTTG--AA--GAAAAA
* *
1808729 GAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * **
1808764 GTGTGCCACAGAGTTGTGGGCTTCAAAAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTT-TGAAGAAAAA
*
1808798 GGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTTG--AA--GAAAAA
*
1808834 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * *
1808869 GTGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTTT-GA-AGAAAAA
* *
1808904 GGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* *
1808938 GGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAA
1 -ATGCCACGGAGTTGTGGGCTTTG--AA--GAAAAA
*
1808974 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 -A-TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * *
1809009 GTGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAA
1 --ATGCCACGGAGTTGTGGGCTTT-GA-AGAAAAA
*
1809044 AGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 A--TGCCACGGAGTTGTGGGCTTT--GAAGAAAAA
* * * *
1809079 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA
1 -ATGCCACGGAGTTGTGGGCTT--TGAAGAAAAA
1809113 AGTGCCACGGAGTTGTGGGCTTTGAA-AAGAAGA
1 A-TGCCACGGAGTTGTGGGCTTTGAAGAA-AA-A
* *
1809146 AGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAG
1 A--TGCCACGGAGTTGTGGGCTTTGAA-GAAAAA
* * *
1809180 GTGCCACGAAGCTGTGGGCTTTGAAGAAAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
* * * *
1809211 ATGCCACTGAGTCGTGGACTTTG-AGACAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
* * * * *
1809241 ATGCCACTGAGTCGTGGACTTTAAAGGAAAAG
1 ATGCCACGGAGTTGTGGGCTTTGAA-GAAAAA
* * *
1809273 ATGCCACTGAGTCGTGGACTTTGA
1 ATGCCACGGAGTTGTGGGCTTTGA
1809297 GCAGAGATTG
Statistics
Matches: 533, Mismatches: 62, Indels: 88
0.78 0.09 0.13
Matches are distributed among these distances:
30 28 0.05
31 25 0.05
32 52 0.10
33 22 0.04
34 158 0.30
35 152 0.29
36 30 0.06
37 66 0.12
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (31 bp):
ATGCCACGGAGTTGTGGGCTTTGAAGAAAAA
Found at i:1809270 original size:93 final size:94
Alignment explanation
Indices: 1809108--1809387 Score: 286
Period size: 93 Copynumber: 3.0 Consensus size: 94
1809098 CTTAAAGATG
* * * * * * *
1809108 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAAA-TGCCACTGAGTCGTGGACTTTGAGAAG-AGAA--TGCCACTGAGTCGTGGACTTTAAA
* *
1809173 GGAAAAGGTGCCAC-GAAG-CTGTGGGCTTTGAAG-
62 GGAAAAGATGCCACTG-AGTC-GTGGACTTTG-AGC
1809206 AAAAAATGCCACTGAGTCGTGGACTTTGAGACA-A-AATGCCACTGAGTCGTGGACTTTAAAGGA
1 AAAAAATGCCACTGAGTCGTGGACTTTGAGA-AGAGAATGCCACTGAGTCGTGGACTTTAAAGGA
1809269 AAAGATGCCACTGAGTCGTGGACTTTGAGC
65 AAAGATGCCACTGAGTCGTGGACTTTGAGC
* * * * * *
1809299 AGAGATTGCCACTGGGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTT-GA-GAA
1 AAAAAATGCCACTGAGTCGTGGACTTTGAGAAGAGAATGCCACTGAGTCGTGGACTTTAAAGGAA
*
1809362 GAGATTGCCACTGAGTCGTGGACTTT
66 AAGA-TGCCACTGAGTCGTGGACTTT
1809388 AAAAAGGTAT
Statistics
Matches: 159, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
92 9 0.06
93 95 0.60
94 24 0.15
95 2 0.01
96 1 0.01
97 21 0.13
98 7 0.04
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (94 bp):
AAAAAATGCCACTGAGTCGTGGACTTTGAGAAGAGAATGCCACTGAGTCGTGGACTTTAAAGGAA
AAGATGCCACTGAGTCGTGGACTTTGAGC
Found at i:1809277 original size:62 final size:63
Alignment explanation
Indices: 1809193--1809390 Score: 280
Period size: 62 Copynumber: 3.2 Consensus size: 63
1809183 CCACGAAGCT
* * * *
1809193 GTGGGCTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGAGACA-A-AATGCCACTGAGTC
1 GTGGACTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
*
1809254 GTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAG-CAGAGATTGCCACTGGGTC
1 GTGGACTTTAAA-GAAAAGATGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
* *
1809317 GTGGACTTT-GAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGA-AGAGATTGCCACTGAGTC
1 GTGGACTTTAAAGAAAAGA-TGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
1809379 GTGGACTTTAAA
1 GTGGACTTTAAA
1809391 AAGGTATTTG
Statistics
Matches: 122, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
61 18 0.15
62 82 0.67
63 22 0.18
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (63 bp):
GTGGACTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
Found at i:1809312 original size:31 final size:31
Alignment explanation
Indices: 1809212--1809387 Score: 259
Period size: 31 Copynumber: 5.7 Consensus size: 31
1809202 GAAGAAAAAA
*
1809212 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
* *
1809242 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-
1 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGAT
*
1809274 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
1809305 TGCCACTGGGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1809336 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1809367 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
1809388 AAAAAGGTAT
Statistics
Matches: 134, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
30 26 0.19
31 83 0.62
32 24 0.18
33 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:1810333 original size:1 final size:1
Alignment explanation
Indices: 1810323--1810357 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
1810313 TGAAAAGGGG
* *
1810323 TTTTTCTTTTTTTGTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1810358 GTGAAGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.03, G:0.03, T:0.94
Consensus pattern (1 bp):
T
Found at i:1810692 original size:1 final size:1
Alignment explanation
Indices: 1810682--1810720 Score: 51
Period size: 1 Copynumber: 39.0 Consensus size: 1
1810672 GCCTTTGCAC
* * *
1810682 TTTTTCTTTTTTTTTTTTTTTTCTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1810721 GTGTTTACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.05, G:0.03, T:0.92
Consensus pattern (1 bp):
T
Found at i:1810704 original size:17 final size:18
Alignment explanation
Indices: 1810682--1810720 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
1810672 GCCTTTGCAC
1810682 TTTTTCTTTTTTTT-TTT
1 TTTTTCTTTTTTTTGTTT
1810699 TTTTTCTTTTTTTTGTTT
1 TTTTTCTTTTTTTTGTTT
1810717 TTTT
1 TTTT
1810721 GTGTTTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.00, C:0.05, G:0.03, T:0.92
Consensus pattern (18 bp):
TTTTTCTTTTTTTTGTTT
Found at i:1810725 original size:10 final size:9
Alignment explanation
Indices: 1810682--1810726 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
1810672 GCCTTTGCAC
*
1810682 TTTTTCTTT
1 TTTTTGTTT
1810691 TTTTT-TTT
1 TTTTTGTTT
*
1810699 TTTTTCTTT
1 TTTTTGTTT
1810708 TTTTTGTTT
1 TTTTTGTTT
1810717 TTTTGTGTTT
1 TTTT-TGTTT
1810727 ACTTTTGACT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
8 8 0.24
9 20 0.61
10 5 0.15
ACGTcount: A:0.00, C:0.04, G:0.07, T:0.89
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:1817034 original size:8 final size:8
Alignment explanation
Indices: 1817021--1817046 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1817011 CAAATCACTA
1817021 TGCTGATT
1 TGCTGATT
1817029 TGCTGATT
1 TGCTGATT
1817037 TGCTGATT
1 TGCTGATT
1817045 TG
1 TG
1817047 GAGTGGCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.27, T:0.50
Consensus pattern (8 bp):
TGCTGATT
Found at i:1817737 original size:52 final size:52
Alignment explanation
Indices: 1817656--1817776 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1817646 TGAAAAGTTA
*
1817656 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
1817708 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1817760 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1817777 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1817789 original size:52 final size:51
Alignment explanation
Indices: 1817656--1817796 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
1817646 TGAAAAGTTA
1817656 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
1817708 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
1817760 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1817797 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1817803 original size:13 final size:13
Alignment explanation
Indices: 1817785--1817809 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1817775 CAAAGATCAG
1817785 TGTATCGATACAA
1 TGTATCGATACAA
1817798 TGTATCGATACA
1 TGTATCGATACA
1817810 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1817869 original size:13 final size:13
Alignment explanation
Indices: 1817851--1817879 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1817841 GGCAGTAGCT
1817851 TACATTGTATCGA
1 TACATTGTATCGA
1817864 TACATTGTATCGA
1 TACATTGTATCGA
1817877 TAC
1 TAC
1817880 GACATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1818227 original size:4 final size:4
Alignment explanation
Indices: 1818218--1818252 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
1818208 GTGCAAAACA
*
1818218 AAAT AAAT AAAT AAAT GAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1818253 GACCTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:1820392 original size:78 final size:78
Alignment explanation
Indices: 1820308--1820478 Score: 209
Period size: 78 Copynumber: 2.2 Consensus size: 78
1820298 GATAAAGACA
* * * *
1820308 GGGTTGGAGTTTCCCCTC-AGAAATAATGGGGCTGGAGTATCTCCGATTATGGAAAATCGATGTT
1 GGGTTGGAGTATCCCCTCGA-AAATAACGGGGCTGGAGTATCCCCGATTATGAAAAATCGATGTT
*
1820372 TTAAAAATGAAACT
65 CTAAAAATGAAACT
** * *
1820386 GGGTTGGAGTATCCCCTCGAAAATAACGGGTTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTC
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGCTGGAGTATCCCCGATTATGAAAAATCGATGTTC
* *
1820451 TAAAAATAAAATCA
66 TAAAAATGAAA-CT
*
1820465 AGGTTGGAGTATCC
1 GGGTTGGAGTATCC
1820479 TCGATGGTGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 64 0.81
79 15 0.19
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGCTGGAGTATCCCCGATTATGAAAAATCGATGTTC
TAAAAATGAAACT
Found at i:1820474 original size:51 final size:51
Alignment explanation
Indices: 1820417--1820530 Score: 156
Period size: 51 Copynumber: 2.2 Consensus size: 51
1820407 AATAACGGGT
*
1820417 TTGGAGTATCCCCGATTGTGAAAAATCGGTGTTCTAAAAATAAAATCAAGG
1 TTGGAGTATCCCCGATGGTGAAAAATCGGTGTTCTAAAAATAAAATCAAGG
* * * * * **
1820468 TTGGAGTATCCTCGATGGTGAAAATTTGGTGTTTTGAAAATAAAATCGGGG
1 TTGGAGTATCCCCGATGGTGAAAAATCGGTGTTCTAAAAATAAAATCAAGG
1820519 TTGGAGTATCCC
1 TTGGAGTATCCC
1820531 TTCAGAAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (51 bp):
TTGGAGTATCCCCGATGGTGAAAAATCGGTGTTCTAAAAATAAAATCAAGG
Found at i:1820540 original size:130 final size:129
Alignment explanation
Indices: 1820368--1820608 Score: 317
Period size: 130 Copynumber: 1.9 Consensus size: 129
1820358 GGAAAATCGA
* * * *
1820368 TGTTTTAAAAATGAAACTGGGTTGGAGTATCCCCTCGAAAATAA-CGGGTTTGGAGTATCCCCGA
1 TGTTTTAAAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAATAGGG-TTAGAGTATCCCCGA
*
1820432 TTGTGAAAAATCGGTGTTCTAAAAATAAAATCAAGG-TTGGAGTATCCTCGATGGTGAAAATTTG
65 TTGTGAAAAATCAGTGTTCTAAAAATAAAA-CAAGGATTGGAGTATCCTCGATGGTGAAAATTTG
1820496 G
129 G
* * *
1820497 TGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCTTC-AGAAATAATAGGGTTAGAGTATCCCTG
1 TGTTTTAAAAATAAAA-CGGGGTTGGAGTATCCCCTCGA-AAATAATAGGGTTAGAGTATCCCCG
* * * *
1820561 ATTGTGGAAAATCAGTGTTTTGAAAATAAAACCAGGATTGGAGTATCC
64 ATTGTGAAAAATCAGTGTTCTAAAAATAAAACAAGGATTGGAGTATCC
1820609 CCTCAGAAAT
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
129 19 0.20
130 74 0.77
131 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (129 bp):
TGTTTTAAAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAATAGGGTTAGAGTATCCCCGAT
TGTGAAAAATCAGTGTTCTAAAAATAAAACAAGGATTGGAGTATCCTCGATGGTGAAAATTTGG
Found at i:1820554 original size:79 final size:78
Alignment explanation
Indices: 1820466--1820767 Score: 340
Period size: 79 Copynumber: 3.8 Consensus size: 78
1820456 ATAAAATCAA
* * *
1820466 GGTTGGAGTATCCTCGATGGT-GAAAATTTGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCC
1 GGTTAGAGTATCC-CGATTGTGGAAAA-TTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
1820530 CTTCAGAAATAATAG
64 CTTCAGAAATAATAG
** * *
1820545 GGTTAGAGTATCCCTGATTGTGGAAAATCAGTGTTTTGAAAATAAAACCAGGATTGGAGTATCCC
1 GGTTAGAGTATCCC-GATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
* *
1820610 CTCAGAAATAA-CG
65 TTCAGAAATAATAG
* * *
1820623 AGGTTGGAGTATCTCCAATTGTGGAAAATTGGTGTTTT-AGAAATAAAACTGGGGTTGGAGTATC
1 -GGTTAGAGTATC-CCGATTGTGGAAAATTGGTGTTTTGA-AAATAAAACCGGGGTTGGAGTATC
** * *
1820687 CCTTTGGAAATATTGG
63 CCTTCAGAAATAATAG
* * * *
1820703 GGTTAGAGTAATTCCGATTATGGAAAATTGGTGTTTTAAAAATAAAACCGAGGTTGGAGTATCCC
1 GGTTAGAGT-ATCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
1820768 CTCGGAAGTA
Statistics
Matches: 188, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.02
79 174 0.93
80 11 0.06
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (78 bp):
GGTTAGAGTATCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCT
TCAGAAATAATAG
Found at i:1820669 original size:209 final size:208
Alignment explanation
Indices: 1820308--1820687 Score: 509
Period size: 209 Copynumber: 1.8 Consensus size: 208
1820298 GATAAAGACA
* * *
1820308 GGGTTGGAGTTTCCCCTCAGAAATAATGGGGCTGGAGTATCTCCGATTATGGAAAATCGATGTTT
1 GGGTTGGAGTATCCCCTCAGAAATAATAGGGCTAGAGTATCTCCGATTATGGAAAATCGATGTTT
* * * *
1820373 TAAAAATGAAACTGGGTTGGAGTATCCCCTCGAAAATAACGGGTTTGGAGTATCCCCGATTGTGA
66 TAAAAATAAAACAGGATTGGAGTATCCCCTCGAAAATAACGGGTTTGGAGTATCCCCAATTGTGA
1820438 AAAATCGGTGTTCTAAAAATAAAA-TCAAGGTTGGAGTATCCTCGATGGTGAAAATTTGGTGTTT
131 AAAATCGGTGTTCTAAAAATAAAACT-AAGGTTGGAGTATCCTCGATGGTGAAAATTTGGTGTTT
1820502 TGAAAATAAAATCG
195 TGAAAATAAAATCG
* * *
1820516 GGGTTGGAGTATCCCTTCAGAAATAATAGGGTTAGAGTATC-CCTGATTGTGGAAAATC-AGTGT
1 GGGTTGGAGTATCCCCTCAGAAATAATAGGGCTAGAGTATCTCC-GATTATGGAAAATCGA-TGT
* *
1820579 TTTGAAAATAAAACCAGGATTGGAGTATCCCCTC-AGAAATAACGAGG-TTGGAGTATCTCCAAT
64 TTTAAAAATAAAA-CAGGATTGGAGTATCCCCTCGA-AAATAACG-GGTTTGGAGTATCCCCAAT
* * * * **
1820642 TGTGGAAAATTGGTGTTTTAGAAATAAAACTGGGGTTGGAGTATCC
126 TGTGAAAAATCGGTGTTCTAAAAATAAAACTAAGGTTGGAGTATCC
1820688 CTTTGGAAAT
Statistics
Matches: 148, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
207 3 0.02
208 64 0.43
209 78 0.53
210 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (208 bp):
GGGTTGGAGTATCCCCTCAGAAATAATAGGGCTAGAGTATCTCCGATTATGGAAAATCGATGTTT
TAAAAATAAAACAGGATTGGAGTATCCCCTCGAAAATAACGGGTTTGGAGTATCCCCAATTGTGA
AAAATCGGTGTTCTAAAAATAAAACTAAGGTTGGAGTATCCTCGATGGTGAAAATTTGGTGTTTT
GAAAATAAAATCG
Found at i:1820688 original size:158 final size:158
Alignment explanation
Indices: 1820465--1820770 Score: 417
Period size: 158 Copynumber: 1.9 Consensus size: 158
1820455 AATAAAATCA
*
1820465 AGGTTGGAGTATCCTCGATGGTGAAAATTTGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCC
1 AGGTTGGAGTATCCTCAATGGTGAAAATTTGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCC
* *
1820530 CTTCAGAAATAATAGGGTTAGAGT-ATCCCTGATTGTGGAAAATCAGTGTTTTGAAAATAAAACC
66 CTTCAGAAATAATAGGGTTAGAGTAATCCC-GATTATGGAAAATCAGTGTTTTAAAAATAAAACC
1820594 -AGGATTGGAGTATCCCCTCAGAAATAACG
130 GAGG-TTGGAGTATCCCCTCAGAAATAACG
*
1820623 AGGTTGGAGTAT-CTCCAATTGTGGAAAA-TTGGTGTTTT-AGAAATAAAA-CTGGGGTTGGAGT
1 AGGTTGGAGTATCCT-CAATGGT-GAAAATTTGGTGTTTTGA-AAATAAAATC-GGGGTTGGAGT
** * * * **
1820684 ATCCCTTTGGAAATATTGGGGTTAGAGTAATTCCGATTATGGAAAATTGGTGTTTTAAAAATAAA
62 ATCCCTTCAGAAATAATAGGGTTAGAGTAATCCCGATTATGGAAAATCAGTGTTTTAAAAATAAA
1820749 ACCGAGGTTGGAGTATCCCCTC
127 ACCGAGGTTGGAGTATCCCCTC
1820771 GGAAGTAAAA
Statistics
Matches: 131, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
157 4 0.03
158 115 0.88
159 12 0.09
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (158 bp):
AGGTTGGAGTATCCTCAATGGTGAAAATTTGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCC
CTTCAGAAATAATAGGGTTAGAGTAATCCCGATTATGGAAAATCAGTGTTTTAAAAATAAAACCG
AGGTTGGAGTATCCCCTCAGAAATAACG
Found at i:1823950 original size:170 final size:168
Alignment explanation
Indices: 1823749--1824147 Score: 387
Period size: 170 Copynumber: 2.3 Consensus size: 168
1823739 CTCATTGTTG
* *
1823749 ACCTGTTGGCTCAATCCTC-GATAAACCCCTTATCACCTTAGTGACCTGTCGACTTAGTCCCCAG
1 ACCTATTGGCTCAGTCCTCAG-TAAACCCCTTATC-CCTTAGTGACCTGTC-ACTTAGTCCCCAG
* * * * * **
1823813 TTAGCCCTTCATCCCTTGTTTACTTATAGGCTTA-ATCCTCGGTAAACCCCTTA-CACCTAT-GG
63 TCAACCCTTCATCACTTGTTTACTTATAGACTGAGATCCT-AATAAACCCCTTATC-CCT-TCGG
*
1823875 TGACCTGTCAACTCAAACTCTAGTCAACCCTT-ATCTCCTTATTT
125 TGACCTGTCAACTCAAACCCTAGTCAACCCTTAATC-CCTTATTT
* * * * * ***
1823919 ATCTATTGGCTTAGTCCTTAGTAAACCCCTTATCCCTTCGATAACCTGTCAGCTTAGTCCTTGGT
1 ACCTATTGGCTCAGTCCTCAGTAAACCCCTTATCCCTTAG-TGACCTGTCA-CTTAGTCCCCAGT
* * * *
1823984 CAACCCTTCATCACTTTTTTACTTGTCGACTGAGTTCCTAATAAACCCCTTATCCCTTCGGTGAC
64 CAACCCTTCATCACTTGTTTACTTATAGACTGAGATCCTAATAAACCCCTTATCCCTTCGGTGAC
* * * ** * *
1824049 TTGTCGACTTAGTCCCTGGTCAACCCTTAATCCCTTGTTT
129 CTGTCAACTCAAACCCTAGTCAACCCTTAATCCCTTATTT
1824089 ACCTATTGGCTCAGTCCTCAGTAAACCCCTTA-CCCGTTTAGTGACCTGTCAACTTAGTC
1 ACCTATTGGCTCAGTCCTCAGTAAACCCCTTATCCC--TTAGTGACCTGTC-ACTTAGTC
1824148 TCTGATCGAC
Statistics
Matches: 185, Mismatches: 34, Indels: 20
0.77 0.14 0.08
Matches are distributed among these distances:
169 10 0.05
170 162 0.88
171 13 0.07
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.34
Consensus pattern (168 bp):
ACCTATTGGCTCAGTCCTCAGTAAACCCCTTATCCCTTAGTGACCTGTCACTTAGTCCCCAGTCA
ACCCTTCATCACTTGTTTACTTATAGACTGAGATCCTAATAAACCCCTTATCCCTTCGGTGACCT
GTCAACTCAAACCCTAGTCAACCCTTAATCCCTTATTT
Found at i:1824074 original size:43 final size:43
Alignment explanation
Indices: 1823928--1824084 Score: 106
Period size: 43 Copynumber: 3.7 Consensus size: 43
1823918 TATCTATTGG
* *
1823928 CTTAGTCCTTAGTAAACCCCTT-ATCCCTTCGATAACCTGTC-A
1 CTTAGTCCCTAGTAAA-CCCTTAATCCCTTCGATAACTTGTCGA
* * * * * ** *
1823970 GCTTAGTCCTTGGTCAACCCTTCATCACTT-TTTTACTTGTCGA
1 -CTTAGTCCCTAGTAAACCCTTAATCCCTTCGATAACTTGTCGA
* * * * *
1824013 CTGAGTTCCTAATAAACCCCTT-ATCCCTTCGGTGACTTGTCGA
1 CTTAGTCCCTAGTAAA-CCCTTAATCCCTTCGATAACTTGTCGA
* *
1824056 CTTAGTCCCTGGTCAACCCTTAATCCCTT
1 CTTAGTCCCTAGTAAACCCTTAATCCCTT
1824085 GTTTACCTAT
Statistics
Matches: 87, Mismatches: 22, Indels: 10
0.73 0.18 0.08
Matches are distributed among these distances:
42 33 0.38
43 54 0.62
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.36
Consensus pattern (43 bp):
CTTAGTCCCTAGTAAACCCTTAATCCCTTCGATAACTTGTCGA
Found at i:1824133 original size:85 final size:85
Alignment explanation
Indices: 1823743--1824147 Score: 329
Period size: 85 Copynumber: 4.8 Consensus size: 85
1823733 CTTTATCTCA
* * * *
1823743 TTGTTGACCTGTTGGCTCAATCCTC-GATAAACCCCTTATCACC-TTAGTGACCTGTCGACTTAG
1 TTGTTTACCTATTGGCTCAGTCCTCAG-TAAACCCCTTATC-CCTTTAGTGACCTGTCAACTTAG
* * *
1823806 TCCCCAGTTAGCCCTTCATCCC
64 TCCCTAGTCAACCCTTCATCCC
* * * * * * * * **
1823828 TTGTTTACTTATAGGCTTAATCCTCGGTAAACCCCTTA-CACCTATGGTGACCTGTCAACTCAAA
1 TTGTTTACCTATTGGCTCAGTCCTCAGTAAACCCCTTATC-CCTTTAGTGACCTGTCAACTTAGT
*
1823892 CTCTAGTCAACCCTT-ATCTCC
65 CCCTAGTCAACCCTTCATC-CC
* * * * * * *
1823913 TTATTTATCTATTGGCTTAGTCCTTAGTAAACCCCTTATCCC-TTCGATAACCTGTCAGCTTAGT
1 TTGTTTACCTATTGGCTCAGTCCTCAGTAAACCCCTTATCCCTTTAG-TGACCTGTCAACTTAGT
* * *
1823977 CCTTGGTCAACCCTTCATCAC
65 CCCTAGTCAACCCTTCATCCC
* * * * * * * ** * *
1823998 TTTTTTACTTGTCGACTGAGTTCCT-AATAAACCCCTTATCCCTTCGGTGACTTGTCGACTTAGT
1 TTGTTTACCTATTGGCTCAG-TCCTCAGTAAACCCCTTATCCCTTTAGTGACCTGTCAACTTAGT
* *
1824062 CCCTGGTCAACCCTTAATCCC
65 CCCTAGTCAACCCTTCATCCC
1824083 TTGTTTACCTATTGGCTCAGTCCTCAGTAAACCCCTTA-CCCGTTTAGTGACCTGTCAACTTAGT
1 TTGTTTACCTATTGGCTCAGTCCTCAGTAAACCCCTTATCCC-TTTAGTGACCTGTCAACTTAGT
1824147 C
65 C
1824148 TCTGATCGAC
Statistics
Matches: 249, Mismatches: 61, Indels: 20
0.75 0.18 0.06
Matches are distributed among these distances:
84 16 0.06
85 222 0.89
86 11 0.04
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.35
Consensus pattern (85 bp):
TTGTTTACCTATTGGCTCAGTCCTCAGTAAACCCCTTATCCCTTTAGTGACCTGTCAACTTAGTC
CCTAGTCAACCCTTCATCCC
Found at i:1825410 original size:165 final size:167
Alignment explanation
Indices: 1825167--1825507 Score: 501
Period size: 165 Copynumber: 2.1 Consensus size: 167
1825157 AATTCCTTTA
* * * *
1825167 ATTTTTAAATTACAAGGTTTTCTTCTTAATGAATTTTTTCGAGAGGATTTTTCTTGGTTTTTAAT
1 ATTTTTAAAATACAAGGTTTTCTTCTCAATAAATTTTTTAGAGAGGATTTTTCTTGGTTTTTAAT
* *
1825232 TTTTAAAATTCATCAAATATTATTATTTACTTCATATTAAATCAGTTTTCAAAAATTAATTCATT
66 TTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTTCAAAAATTAATTCATT
*
1825297 TTCATG-AGTTTTTTATTTTTTTCTTGAAATTTCCCT
131 TTCATGAAGTTTTTTATTTTTTCCTTGAAATTTCCCT
** *
1825333 ATTTTTAAAATAC-AGAGTTTTCTTCTCCGTAAATTTTTTAGGGA-GATTTTTCTTGGTTTTTAA
1 ATTTTTAAAATACAAG-GTTTTCTTCTCAATAAATTTTTTAGAGAGGATTTTTCTTGGTTTTTAA
* * *
1825396 TTTTTAAAATTCATCAATTATTATTATTTAATTCTTATTAAATCAATTTTCAAAAATTCATTCAT
65 TTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTTCAAAAATTAATTCAT
* *
1825461 TTTCATGAATTTTTTTATTTTTTCCTTGAAATTTTCCT
130 TTTCATGAAGTTTTTTATTTTTTCCTTGAAATTTCCCT
*
1825499 -TTTGTAAAA
1 ATTTTTAAAA
1825508 AATCAAATTT
Statistics
Matches: 157, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
165 96 0.61
166 61 0.39
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.53
Consensus pattern (167 bp):
ATTTTTAAAATACAAGGTTTTCTTCTCAATAAATTTTTTAGAGAGGATTTTTCTTGGTTTTTAAT
TTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTTCAAAAATTAATTCATT
TTCATGAAGTTTTTTATTTTTTCCTTGAAATTTCCCT
Found at i:1825551 original size:165 final size:164
Alignment explanation
Indices: 1825202--1825583 Score: 475
Period size: 165 Copynumber: 2.3 Consensus size: 164
1825192 TTAATGAATT
* *
1825202 TTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTACTTCAT
1 TTTTCAAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCAT
* *
1825267 ATTAAATCAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTTATTTTTTTCTTGAAATTTCCC
66 ATTAAATCAATTTTCAAAAATTAATTCATTTTCATGAGTTTTTTATTTTTTCCTTGAAATTTCCC
* * * *
1825332 TATTTTTAAAATACAGAGTTTTCTTCTCCGTAAA
131 TATTTGTAAAAAACAGAATTTTCTTCACCGTAAA
** * * *
1825366 TTTTTTAGGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAATTATTATTATTTAATTCT
1 TTTTCAAGAG-GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCA
* * *
1825431 TATTAAATCAATTTTCAAAAATTCATTCATTTTCATGAATTTTTTTATTTTTTCCTTGAAATTTT
65 TATTAAATCAATTTTCAAAAATTAATTCATTTTCATG-AGTTTTTTATTTTTTCCTTGAAATTTC
* *
1825496 CCT-TTTGTAAAAAATCA-AATTTTCTGT-AGCTTAAA
129 CCTATTTGTAAAAAA-CAGAATTTTCT-TCACCGTAAA
** * *
1825531 TATTTCCAAGAGGA-TTTTCTTTGGTTTAAAATTTTTTAAATTCATCTAATATT
1 T-TTT-CAAGAGGATTTTTC-TTGGTTTTTAATTTTTAAAATTCATCAAATATT
1825584 GTCATTGAAC
Statistics
Matches: 186, Mismatches: 25, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
164 7 0.04
165 113 0.61
166 63 0.34
167 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (164 bp):
TTTTCAAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCAT
ATTAAATCAATTTTCAAAAATTAATTCATTTTCATGAGTTTTTTATTTTTTCCTTGAAATTTCCC
TATTTGTAAAAAACAGAATTTTCTTCACCGTAAA
Found at i:1825604 original size:166 final size:163
Alignment explanation
Indices: 1825202--1825634 Score: 455
Period size: 165 Copynumber: 2.6 Consensus size: 163
1825192 TTAATGAATT
* *
1825202 TTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTACTTCAT
1 TTTTCAAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATC-AATATTATTATTAAC-TCAT
* *
1825267 ATTAAATCAGTTTTCAAAAATTAATTCATTTTCATG-AGTTTTTTATTTTTTTCTTGAAATTTCC
64 ATTAAATCAGTTTTCAAAAATTCATTCATTTTCATGAAGTTTTTTATTTTTTCCTTGAAATTTCC
* * * *
1825331 CTATTTTTAAAATACAGAGTTTTCTTCTCCGTAAA
129 CTATTTGTAAAAAACAGAATTTTCTTCACCGTAAA
** * * *
1825366 TTTTTTAGGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAATTATTATTATTTAATTCT
1 TTTTCAAGAG-GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAA-TATTATTA-TTAACTCA
* * *
1825431 TATTAAATCAATTTTCAAAAATTCATTCATTTTCATGAATTTTTTTATTTTTTCCTTGAAATTTT
63 TATTAAATCAGTTTTCAAAAATTCATTCATTTTCATGAAGTTTTTTATTTTTTCCTTGAAATTTC
* *
1825496 CCT-TTTGTAAAAAATCA-AATTTTCTGT-AGCTTAAA
128 CCTATTTGTAAAAAA-CAGAATTTTCT-TCACCGTAAA
** * * *
1825531 TATTTCCAAGAGGA-TTTTCTTTGGTTTAAAATTTTTTAAATTCATCTAATATTGTCATTGAACT
1 T-TTT-CAAGAGGATTTTTC-TTGGTTTTTAATTTTTAAAATTCATC-AATATTATTATT-AACT
** * * *
1825595 CCCATTAAATCAGTTTTGAGAAATTCTATTTATTTT-ATGA
61 CATATTAAATCAGTTTTCAAAAATTC-ATTCATTTTCATGA
1825635 GATGTGAATT
Statistics
Matches: 225, Mismatches: 32, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
164 9 0.04
165 108 0.48
166 95 0.42
167 13 0.06
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (163 bp):
TTTTCAAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAATATTATTATTAACTCATAT
TAAATCAGTTTTCAAAAATTCATTCATTTTCATGAAGTTTTTTATTTTTTCCTTGAAATTTCCCT
ATTTGTAAAAAACAGAATTTTCTTCACCGTAAA
Found at i:1826140 original size:19 final size:19
Alignment explanation
Indices: 1826110--1826147 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
1826100 AAAAGGAGAG
1826110 GAAAAAAGAGAAA-AAAAA
1 GAAAAAAGAGAAAGAAAAA
1826128 GAAAAAAGTAGAAAGAAAAA
1 GAAAAAAG-AGAAAGAAAAA
1826148 ATTAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 5 0.28
20 5 0.28
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (19 bp):
GAAAAAAGAGAAAGAAAAA
Found at i:1826144 original size:14 final size:14
Alignment explanation
Indices: 1826125--1826155 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1826115 AAGAGAAAAA
1826125 AAAGAAAAAAGTAG
1 AAAGAAAAAAGTAG
*
1826139 AAAGAAAAAATTAG
1 AAAGAAAAAAGTAG
1826153 AAA
1 AAA
1826156 AAATTAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (14 bp):
AAAGAAAAAAGTAG
Found at i:1846302 original size:42 final size:42
Alignment explanation
Indices: 1846247--1847334 Score: 522
Period size: 42 Copynumber: 25.7 Consensus size: 42
1846237 AAAGGTGAAA
* * *
1846247 AAAGTCTCTAGGGTCAAAGCTGACAGGTAGATTGAGGGTAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTGAGGATAGG
* *
1846289 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTGAGGGTAGA
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTGAGGATAGG
* * * * *
1846331 AAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTTTA-GAT-GAG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGATAG-G
* * * * *
1846373 ACAGTCTCTAAGGTCAAAGCCGATAGGCAGACTGAGGGTAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTGAGGATAGG
* * * *
1846415 AAAGTCACTAGGGTCAAAACCGACAGACAGACTGATGG-TAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTGA-GGATAGG
* * *
1846457 AAAGTCTCCAGGGTCAAAGCTGACAGACAGACTTTGA--ATAAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA--TTGAGGAT-AGG
* * ** *
1846500 -TAGTCTCTAGAGTCAAAGTTGACAGGTAGATTGAAGGATAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG-AGGATAGG
* * * * *
1846542 AAAGTCTCCAAGGTCAAAACTGACAGGCAGACTTTA-GATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * *
1846585 -CAGTCTCCAGGGTCAAAGCCGACAGGCAGATAGAAGTATAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG-AGGATAGG
*
1846627 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTTA-GATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * * ** * *
1846670 -TAGTCTCCAGGGTTAAAGCCGACAGGTAGACTAAAGGGTAGA
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGATAGG
* *
1846712 AAAGTCTCTAGGGTCAAAGCC-AGCAGGCAGACTTTA-AATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGA-TTGAGGAT-AGG
* * * * * * * *
1846755 -TAGTCTCCAAGGTCAAAACCAACAGGCAGACTGAAGGGTAAG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG-AGGATAGG
* * *
1846797 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTA-GATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * * * *
1846840 -TAGTCTCCAGGGTCAAAGCTGACAGGCAAACTGAAGTATAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG-AGGATAGG
* * * * * *
1846882 AAACTCTCAAAGGTCAAAACTGACAGGCAGACTTTA-GATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * * ** *
1846925 CAA-TCTCCAAGGTCAAAGCCGATAGGCAGACTAAAGGGTAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGATAGG
* * * * *
1846967 AAACTCTCTAAGGTCAAAGCGGACAGGCAAACTTTA-GATAAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * * * *
1847010 -TAGTCTCCAAGGTCAAAGCTGACAAGCAGACTGAAAGG-TAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG--AGGATAGG
* * * *
1847052 AAAGTCTCTAGGTTCAAAGCCGACAGGTAAACTTTA-GATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * * * *
1847095 -TAGTCTCCAGGGTTAAAGCTGACAAGCAGACTGAAGGATAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG-AGGATAGG
* * *
1847137 AAAGTCTCCA-AGTCCAAAGCCGACAGGCAGACTTTA-GATGAGG
1 AAAGTCTCTAGGGT-CAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * ** * * * *
1847180 -TAGTCTCCAAGGTCAAAGTTGATAGGTAGACTGAAGGATAGT
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTG-AGGATAGG
* * * * *
1847222 AAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTTTA-GATGAGG
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGAT-AGG
* * * * ** *
1847265 -TAGTCTCCA-AGTCAAAGCCGACAAGCAGACTAAAGGATAGA
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TTGAGGATAGG
* * *
1847306 AAAGTCTCCAAGGTCAAAGCCGATAGGCA
1 AAAGTCTCTAGGGTCAAAGCCGACAGGCA
1847335 AACTTTAGAT
Statistics
Matches: 806, Mismatches: 180, Indels: 119
0.73 0.16 0.11
Matches are distributed among these distances:
40 3 0.00
41 32 0.04
42 455 0.56
43 304 0.38
44 12 0.01
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (42 bp):
AAAGTCTCTAGGGTCAAAGCCGACAGGCAGATTGAGGATAGG
Found at i:1846565 original size:85 final size:85
Alignment explanation
Indices: 1846249--1847379 Score: 1055
Period size: 85 Copynumber: 13.4 Consensus size: 85
1846239 AGGTGAAAAA
* * * * * * *
1846249 AGTCTCTAGGGTCAAAGCTGACAGGTAGATTG-AGGGTAGGAAAGTCTCTAGGGTCAAAGCCGAC
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGAC
* * **
1846313 AGGCAGA-TTGAG-GGTAGAAA
66 AGGCAGACTTTAGATG-AG-GT
* ** * *
1846333 AGTCTCCA-AGGTCAAAG-TCGATAGGCAGACTTTA-GAT-GAGACAGTCTCTAAGGTCAAAGCC
1 AGTCTCCAGA-GTCAAAGCT-GACAGGCAGACTGAAGGATAG-GAAAGTCTCCAAGGTCAAAGCC
* * * *
1846394 GATAGGCAGAC-TGAG-GGTAGGAA
63 GACAGGCAGACTTTAGATG-AGG-T
* * * * * * * * *
1846417 AGTCACTAGGGTCAAAACCGACAGACAGACTGATGG-TAGGAAAGTCTCCAGGGTCAAAGCTGAC
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGAC
* *
1846481 AGACAGACTTT-GAATAAGGT
66 AGGCAGACTTTAG-ATGAGGT
* * * * * *
1846501 AGTCTCTAGAGTCAAAGTTGACAGGTAGATTGAAGGATAGGAAAGTCTCCAAGGTCAAAACTGAC
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGAC
*
1846566 AGGCAGACTTTAGATGAGGC
66 AGGCAGACTTTAGATGAGGT
* * * * *
1846586 AGTCTCCAGGGTCAAAGCCGACAGGCAGA-TAGAAGTATAGGAAAGTCTCTAGGGTCAAAGCCGA
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACT-GAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGA
1846650 CAGGCAGACTTTAGATGAGGT
65 CAGGCAGACTTTAGATGAGGT
* * * * * * * * *
1846671 AGTCTCCAGGGTTAAAGCCGACAGGTAGACTAAAGGGTAGAAAAGTCTCTAGGGTCAAAGCC-AG
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGA-
*
1846735 CAGGCAGACTTTAAATGAGGT
65 CAGGCAGACTTTAGATGAGGT
* ** * *
1846756 AGTCTCCA-AGGTCAAAACCAACAGGCAGACTGAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGA
1 AGTCTCCAGA-GTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGA
1846820 CAGGCAGACTTTAGATGAGGT
65 CAGGCAGACTTTAGATGAGGT
* * * * * * *
1846841 AGTCTCCAGGGTCAAAGCTGACAGGCAAACTGAAGTATAGGAAACTCTCAAAGGTCAAAACTGAC
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGAC
*
1846906 AGGCAGACTTTAGATGAGGC
66 AGGCAGACTTTAGATGAGGT
* * * * * * * *
1846926 AATCTCCA-AGGTCAAAGCCGATAGGCAGACTAAAGGGTAGGAAACTCTCTAAGGTCAAAGCGGA
1 AGTCTCCAGA-GTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGA
* *
1846990 CAGGCAAACTTTAGATAAGGT
65 CAGGCAGACTTTAGATGAGGT
* *
1847011 AGTCTCCA-AGGTCAAAGCTGACAAGCAGACTGAAAGG-TAGGAAAGTCT-CTAGGTTCAAAGCC
1 AGTCTCCAGA-GTCAAAGCTGACAGGCAGACTG-AAGGATAGGAAAGTCTCCAAGG-TCAAAGCC
* *
1847073 GACAGGTAAACTTTAGATGAGGT
63 GACAGGCAGACTTTAGATGAGGT
* * *
1847096 AGTCTCCAGGGTTAAAGCTGACAAGCAGACTGAAGGATAGGAAAGTCTCCAA-GTCCAAAGCCGA
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGT-CAAAGCCGA
1847160 CAGGCAGACTTTAGATGAGGT
65 CAGGCAGACTTTAGATGAGGT
* * * * *
1847181 AGTCTCCA-AGGTCAAAGTTGATAGGTAGACTGAAGGATAGTAAAGTCTCCAAGGTCAAAGCTGA
1 AGTCTCCAGA-GTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGA
*
1847245 TAGGCAGACTTTAGATGAGGT
65 CAGGCAGACTTTAGATGAGGT
* * * * *
1847266 AGTCTCCA-AGTCAAAGCCGACAAGCAGACTAAAGGATAGAAAAGTCTCCAAGGTCAAAGCCGAT
1 AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGAC
* * *
1847330 AGGCAAACTTTAGATAAGGC
66 AGGCAGACTTTAGATGAGGT
* *
1847350 AGTCTTCA-AGGTCAAAGTTGACAGGCAGAC
1 AGTCTCCAGA-GTCAAAGCTGACAGGCAGAC
1847380 AGAAAGATGA
Statistics
Matches: 875, Mismatches: 141, Indels: 61
0.81 0.13 0.06
Matches are distributed among these distances:
83 2 0.00
84 224 0.26
85 638 0.73
86 11 0.01
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (85 bp):
AGTCTCCAGAGTCAAAGCTGACAGGCAGACTGAAGGATAGGAAAGTCTCCAAGGTCAAAGCCGAC
AGGCAGACTTTAGATGAGGT
Found at i:1857207 original size:51 final size:51
Alignment explanation
Indices: 1857071--1857207 Score: 184
Period size: 51 Copynumber: 2.7 Consensus size: 51
1857061 AAAAATGCTT
* * * * *
1857071 AAATGTATCGATACATTGAGAAATGTATTAATACATCTGGGTTAAAACCCA
1 AAATGTATCAATACAATGAAAAATGTATTAATATATCTGGATTAAAACCCA
* * *
1857122 AAATGTATCAATATAATAAAAAATGTATCAATATATCTGGATTAAAACCCA
1 AAATGTATCAATACAATGAAAAATGTATTAATATATCTGGATTAAAACCCA
* *
1857173 GAATGTATCAATACAATGAAAAATGTATTGATATA
1 AAATGTATCAATACAATGAAAAATGTATTAATATA
1857208 AACAGTGAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (51 bp):
AAATGTATCAATACAATGAAAAATGTATTAATATATCTGGATTAAAACCCA
Found at i:1857384 original size:21 final size:21
Alignment explanation
Indices: 1857351--1857394 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
1857341 TTTTTGACCG
*
1857351 TTAAGGCCTTGTATCAATACA
1 TTAAGGCCATGTATCAATACA
* **
1857372 TTAAGGGCATGTATTGATACA
1 TTAAGGCCATGTATCAATACA
1857393 TT
1 TT
1857395 CTAGCATAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (21 bp):
TTAAGGCCATGTATCAATACA
Found at i:1857921 original size:48 final size:47
Alignment explanation
Indices: 1857831--1857986 Score: 172
Period size: 48 Copynumber: 3.3 Consensus size: 47
1857821 TATGATCAAA
* * *
1857831 GTATCGATATATCTGGATTTTTTTCAGAATATATCGATACAATACAAT-AT
1 GTATCGATACATATGGA-TTTTTT-AGATTATATC-ATACAAT-CAATAAT
* * *
1857881 GTATCGATACATTTGGATTTTTTAGATTATATATATACAATGAATAAT
1 GTATCGATACATATGGATTTTTTAGATTATAT-CATACAATCAATAAT
* * *
1857929 GTATCGATACATATAGA-TTTTTAGATTGTATCATACAATCACTAAT
1 GTATCGATACATATGGATTTTTTAGATTATATCATACAATCAATAAT
1857975 GTATCGATACAT
1 GTATCGATACAT
1857987 CCACCTTTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
46 24 0.26
47 16 0.17
48 32 0.34
49 6 0.06
50 15 0.16
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (47 bp):
GTATCGATACATATGGATTTTTTAGATTATATCATACAATCAATAAT
Found at i:1859992 original size:86 final size:86
Alignment explanation
Indices: 1859842--1860012 Score: 297
Period size: 86 Copynumber: 2.0 Consensus size: 86
1859832 TTCCCACTTG
* * *
1859842 CTTGCATTGCATTTTTTAGTTTTTATATAACAAAAAGGGGGAGAAATGCACAAATTTGTGGTATA
1 CTTGCATTGCATTTTTCAGTTTTTATACAACAAAAAGAGGGAGAAATGCACAAATTTGTGGTATA
1859907 TATATTTTTGATATATTATTT
66 TATATTTTTGATATATTATTT
* *
1859928 CTTGGATTGCATTTTTCAGTTTTTATACAACAAAAAGAGGGAGAAATGCACAAATTTGTTGTATA
1 CTTGCATTGCATTTTTCAGTTTTTATACAACAAAAAGAGGGAGAAATGCACAAATTTGTGGTATA
1859993 TATATTTTTGATATATTATT
66 TATATTTTTGATATATTATT
1860013 GCATATCGGA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (86 bp):
CTTGCATTGCATTTTTCAGTTTTTATACAACAAAAAGAGGGAGAAATGCACAAATTTGTGGTATA
TATATTTTTGATATATTATTT
Found at i:1867285 original size:13 final size:13
Alignment explanation
Indices: 1867269--1867298 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1867259 ATACATTGTT
1867269 CATTGTATCGATA
1 CATTGTATCGATA
1867282 CATTGTATCGATA
1 CATTGTATCGATA
1867295 CATT
1 CATT
1867299 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:1867339 original size:20 final size:19
Alignment explanation
Indices: 1867314--1867387 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
1867304 TTTACCCAGA
1867314 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
1867334 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
1867354 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
1867374 TGTATCGATACATT
1 TGTATCGATACATT
1867388 CAGGCATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:1869616 original size:38 final size:39
Alignment explanation
Indices: 1869532--1869618 Score: 95
Period size: 38 Copynumber: 2.2 Consensus size: 39
1869522 TTTTCTTTTC
**
1869532 TTTCTCCCTTAATCAAAATAATTTTAACAAATTCGTACAT
1 TTTC-CCCTTAATCAAAATAATTTTAACAAATTCACACAT
* ** * *
1869572 TCTCCCCTTAAT-AAGGTAATTTTAGCAAATTCACGCAT
1 TTTCCCCTTAATCAAAATAATTTTAACAAATTCACACAT
1869610 TTTCCCCTT
1 TTTCCCCTT
1869619 TTATTAAAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 28 0.72
39 8 0.21
40 3 0.08
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (39 bp):
TTTCCCCTTAATCAAAATAATTTTAACAAATTCACACAT
Found at i:1870709 original size:24 final size:24
Alignment explanation
Indices: 1870679--1870761 Score: 78
Period size: 24 Copynumber: 3.3 Consensus size: 24
1870669 GAAGGTTCAA
1870679 AAGTGTTAGCCAACTAAACATCTC
1 AAGTGTTAGCCAACTAAACATCTC
** * *
1870703 AAGTGTT-GGAAAGTAAATAAAGTCTC
1 AAGTGTTAGCCAACT-AA-ACA-TCTC
1870729 AAAAGTGTTAGCCAACTAAACATCTC
1 --AAGTGTTAGCCAACTAAACATCTC
1870755 AAGTGTT
1 AAGTGTT
1870762 GGAAAGTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
23 4 0.09
24 16 0.36
25 2 0.04
26 8 0.18
27 2 0.04
28 9 0.20
29 4 0.09
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (24 bp):
AAGTGTTAGCCAACTAAACATCTC
Found at i:1870728 original size:26 final size:26
Alignment explanation
Indices: 1870699--1870778 Score: 76
Period size: 26 Copynumber: 3.1 Consensus size: 26
1870689 CAACTAAACA
1870699 TCTCAAGTGTTGGAAAGTAAATAAAG
1 TCTCAAGTGTTGGAAAGTAAATAAAG
** * *
1870725 TCTCAAAAGTGTTAGCCAACT-AA-ACA-
1 TCTC--AAGTGTT-GGAAAGTAAATAAAG
1870751 TCTCAAGTGTTGGAAAGTAAATAAAG
1 TCTCAAGTGTTGGAAAGTAAATAAAG
1870777 TC
1 TC
1870779 GAATGACTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
23 4 0.10
24 9 0.22
25 2 0.05
26 10 0.25
27 2 0.05
28 9 0.22
29 4 0.10
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (26 bp):
TCTCAAGTGTTGGAAAGTAAATAAAG
Found at i:1870753 original size:52 final size:52
Alignment explanation
Indices: 1870675--1870778 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
1870665 TCATGAAGGT
1870675 TCAAAAGTGTTAGCCAACTAAACATCTCAAGTGTTGGAAAGTAAATAAAGTC
1 TCAAAAGTGTTAGCCAACTAAACATCTCAAGTGTTGGAAAGTAAATAAAGTC
1870727 TCAAAAGTGTTAGCCAACTAAACATCTCAAGTGTTGGAAAGTAAATAAAGTC
1 TCAAAAGTGTTAGCCAACTAAACATCTCAAGTGTTGGAAAGTAAATAAAGTC
1870779 GAATGACTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.25
Consensus pattern (52 bp):
TCAAAAGTGTTAGCCAACTAAACATCTCAAGTGTTGGAAAGTAAATAAAGTC
Found at i:1871063 original size:21 final size:20
Alignment explanation
Indices: 1871034--1871076 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1871024 GGCTAGTGTG
*
1871034 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
1871055 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
1871075 GG
1 GG
1871077 TGGGTGCTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:1877710 original size:21 final size:20
Alignment explanation
Indices: 1877685--1877737 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 20
1877675 TACAAGCCAA
*
1877685 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA-TTCTTGG
1877706 TGTATCGATAC-ATTCTTGG
1 TGTATCGATACAATTCTTGG
1877725 TGTATCGATACAA
1 TGTATCGATACAA
1877738 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 17 0.57
20 2 0.07
21 11 0.37
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATTCTTGG
Found at i:1877743 original size:19 final size:19
Alignment explanation
Indices: 1877685--1877743 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 19
1877675 TACAAGCCAA
1877685 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA--TTTTGG
1877706 TGTATCGATAC-ATTCTTGG
1 TGTATCGATACAATT-TTGG
*
1877725 TGTATCGATACAAGTTTGG
1 TGTATCGATACAATTTTGG
1877744 CTACTGCCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
18 2 0.06
19 19 0.54
20 3 0.09
21 11 0.31
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (19 bp):
TGTATCGATACAATTTTGG
Found at i:1879739 original size:51 final size:51
Alignment explanation
Indices: 1879684--1879878 Score: 205
Period size: 51 Copynumber: 3.8 Consensus size: 51
1879674 TCCCGGTTTC
*
1879684 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCTGATTTT
1 ATTTCCAAAACATCAATTTTTCTCAATCGGGGATACTCCAACTCTGATTTT
* * * * * * * *
1879735 ATTTCTAAAGCATCGATTTATCGCAACCGGGGATACTCCAA-TCTCGGTTTC
1 ATTTCCAAAACATCAATTTTTCTCAATCGGGGATACTCCAACTCT-GATTTT
* * * * *
1879786 ATCTCCAAAACATCAATTTTTCTTAATTGGGGATACTCCGACTCTAATTTT
1 ATTTCCAAAACATCAATTTTTCTCAATCGGGGATACTCCAACTCTGATTTT
* * *
1879837 ATTTCCAAAAAACCAATTTTT-TACAATTGGGGATACTCCAAC
1 ATTTCCAAAACATCAATTTTTCT-CAATCGGGGATACTCCAAC
1879879 CCCGTTATTT
Statistics
Matches: 114, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
50 4 0.04
51 107 0.94
52 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (51 bp):
ATTTCCAAAACATCAATTTTTCTCAATCGGGGATACTCCAACTCTGATTTT
Found at i:1879869 original size:102 final size:102
Alignment explanation
Indices: 1879660--1879882 Score: 293
Period size: 102 Copynumber: 2.2 Consensus size: 102
1879650 TTTTTCATCT
* *
1879660 CGGGGATACTCTAATCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA
1 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA
* * ** * * *
1879725 CTCTGATTTTATTTCTAAAGCATCGATTTATCGCAAC
66 CTCTAATTTTATTTCCAAAAAACCAATTTATCACAAC
* * *
1879762 CGGGGATACTCCAATCTCGGTTTCATCTCCAAAACATCAATTTTTCTTAATTGGGGATACTCCGA
1 CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA
* * *
1879827 CTCTAATTTTATTTCCAAAAAACCAATTTTTTACAAT
66 CTCTAATTTTATTTCCAAAAAACCAATTTATCACAAC
* *
1879864 TGGGGATACTCCAACCCCG
1 CGGGGATACTCCAATCCCG
1879883 TTATTTCATC
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
102 103 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (102 bp):
CGGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAA
CTCTAATTTTATTTCCAAAAAACCAATTTATCACAAC
Found at i:1880063 original size:51 final size:51
Alignment explanation
Indices: 1880001--1880120 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 51
1879991 TTATTTCTGA
* *
1880001 GGGGATACTCCAACCCCGATTTTA-TTTCTAAAATACCAATTTTTCACAAAT-
1 GGGGATACTCCAACCCCGATTTTAGTTTC-AAAACACCAATTTCTCA-AAATC
* * * *
1880052 GGGGGTACTCCAACTCCGATTTTAGTTTCAAAACATCAATTTCTCATAATC
1 GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCAATTTCTCAAAATC
1880103 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
1880121 TTATTTTCAC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 3 0.05
51 52 0.88
52 4 0.07
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCAATTTCTCAAAATC
Found at i:1882178 original size:474 final size:474
Alignment explanation
Indices: 1881291--1883653 Score: 4649
Period size: 474 Copynumber: 5.0 Consensus size: 474
1881281 TCTGAAAGTG
* *
1881291 TATCGATATATACAAAGGTTTTGACTTTTTGTAGCTTAAGTCAACCATAATGTATCGATACAAAT
1 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
*
1881356 ACATATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
66 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
1881421 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
131 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
1881486 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
196 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
1881551 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
261 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
1881616 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
326 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
1881681 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
391 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
1881746 CCTTGGAATATACTGAGTA
456 CCTTGGAATATACTGAGTA
1881765 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1881830 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
66 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
1881895 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
131 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
1881960 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
196 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
1882025 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
261 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
1882090 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
326 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
1882155 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
391 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
1882220 CCTTGGAATATACTGAGTA
456 CCTTGGAATATACTGAGTA
1882239 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1882304 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
66 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
1882369 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
131 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
1882434 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
196 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
1882499 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
261 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
1882564 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
326 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
1882629 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
391 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
1882694 CCTTGGAATATACTGAGTA
456 CCTTGGAATATACTGAGTA
1882713 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1882778 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
66 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
1882843 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
131 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
1882908 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
196 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
1882973 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
261 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
1883038 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
326 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
1883103 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
391 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
1883168 CCTTGGAATATACTGAGTA
456 CCTTGGAATATACTGAGTA
1883187 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1 TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
1883252 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
66 ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
1883317 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
131 TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
1883382 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
196 TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
*
1883447 TCAAAACCAATATCCTAACATAATGC--AATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
261 TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
*
1883510 AAAAGTATCTCGATAACTCTAAAGGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
326 AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
*
1883575 CACCTCTAACATAAAAGCGTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
391 CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
*
1883640 CCTTGGGATATACT
456 CCTTGGAATATACT
1883654 TTCGATGTGA
Statistics
Matches: 1882, Mismatches: 7, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
472 178 0.09
474 1704 0.91
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.35
Consensus pattern (474 bp):
TATCGATATATACACAGGTTTTGACTTTTTATAGCTTAAGTCAACCATAATGTATCGATACAAAT
ACCTATGTATTGATACTTTGAAGTCTTTTTACTTAAAAATATTCGATTTAAAGCTAGAAAATATT
TGTTCATAACTTAAAAACACTTTTTGAAAATGAAGATTACTTAGAACACTGTTTTAGAATATTTT
TAAACGAACAAAGCTTGTTTACAAATTTTCAAAGTCTTTTCTGGTTTTATTCAATCTTTGTTATA
TCAAAACCAAGATCCTAACATAATGCAAAATGACCAAAATTCCTTTTGAGTTATACCTTTAATAT
AAAAGTATCTCGATAACTCTAAAAGACTAAATGATTATAAAATGGGTGAACATATCTGAAATGCA
CACCTCTAACATAAAAGCTTCCCAATGACTACATCGACTTAGTTCTAAAAAAATTATCAAAATGC
CCTTGGAATATACTGAGTA
Found at i:1884775 original size:26 final size:26
Alignment explanation
Indices: 1884738--1884795 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
1884728 TATATATGCA
1884738 AAAAGAATCATATATAAAAGTTTAATT
1 AAAA-AATCATATATAAAAGTTTAATT
1884765 AAAAAATCATATATAAAAGTTTAATT
1 AAAAAATCATATATAAAAGTTTAATT
*
1884791 GAAAA
1 AAAAA
1884796 TTCCATACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (26 bp):
AAAAAATCATATATAAAAGTTTAATT
Found at i:1884929 original size:27 final size:25
Alignment explanation
Indices: 1884747--1884936 Score: 82
Period size: 27 Copynumber: 7.2 Consensus size: 25
1884737 AAAAAGAATC
* *
1884747 ATATATAAAAGTTTAATTAAAAAATC
1 ATATATAAAAGTTTAATT-AAAATTT
*
1884773 ATATATAAAAGTTTAATTGAAAATTCC
1 ATATATAAAAGTTTAATT-AAAATT-T
** *
1884800 ATACT-TAAGTGTTGAATTCAAAATTTT
1 ATA-TATAAAAGTTTAATT-AAAA-TTT
* * * *
1884827 ACATATAAAAAATTTCACTAAAAATTCT
1 ATATAT-AAAAGTTT-AATTAAAATT-T
* *
1884855 ATATGTAATAAGTTTAACTAATAATTCT
1 ATATATAA-AAGTTTAATTAA-AATT-T
* ** *
1884883 ATGTAGGAAAG-TTAA-AAAAATTT
1 ATATATAAAAGTTTAATTAAAATTT
1884906 ATATATGAAAAGTTTAATTGAAAATTT
1 ATATAT-AAAAGTTTAATT-AAAATTT
1884933 -TATA
1 ATATA
1884937 AATCCTCATT
Statistics
Matches: 122, Mismatches: 29, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
23 5 0.04
24 8 0.07
25 6 0.05
26 32 0.26
27 38 0.31
28 31 0.25
29 2 0.02
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.38
Consensus pattern (25 bp):
ATATATAAAAGTTTAATTAAAATTT
Found at i:1888621 original size:22 final size:22
Alignment explanation
Indices: 1888579--1888622 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
1888569 ATGTTATTTC
*
1888579 TATTAATATTTCTACTATAAAA
1 TATTAATATTTCTAATATAAAA
1888601 TATTAATATTT-TAATATTAAAA
1 TATTAATATTTCTAATA-TAAAA
1888623 AAATATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTAATATTTCTAATATAAAA
Found at i:1888842 original size:23 final size:23
Alignment explanation
Indices: 1888808--1888851 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
1888798 GAAATTATAT
1888808 TAATAATTTATTATTAAAATAAA
1 TAATAATTTATTATTAAAATAAA
1888831 TAAT-ATTATATTATTAAAATA
1 TAATAATT-TATTATTAAAATA
1888852 TAAATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAATAATTTATTATTAAAATAAA
Found at i:1898396 original size:122 final size:122
Alignment explanation
Indices: 1898179--1898425 Score: 431
Period size: 122 Copynumber: 2.0 Consensus size: 122
1898169 ATATATATGT
* * *
1898179 GTTCATGTATAAATGAGTTTCTTTGTATGGCATTCACTAGTAACCTGCAATTTTTTTTACTACAA
1 GTTCATGTATAAATGAGTTTCTTAGTATAGCATTCACTACTAACCTGCAATTTTTTTTACTACAA
**
1898244 TCCTGTAGTTTGCTAATCATAATACAGAATTATGTAGGGGTCCATTTAAAAGCATGG
66 TCCTGTAGTAGGCTAATCATAATACAGAATTATGTAGGGGTCCATTTAAAAGCATGG
*
1898301 GTTCATGTATAAATGAGTTTCTTAGTATAGCATTCACTACTAACCTGCAGTTTTTTTTACTACAA
1 GTTCATGTATAAATGAGTTTCTTAGTATAGCATTCACTACTAACCTGCAATTTTTTTTACTACAA
*
1898366 TCCTGTAGTAGGCTAATCATAATACGGAATTATGTAGGGGTCCATTTAAAAGCATGG
66 TCCTGTAGTAGGCTAATCATAATACAGAATTATGTAGGGGTCCATTTAAAAGCATGG
1898423 GTT
1 GTT
1898426 TCACATAATA
Statistics
Matches: 118, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
122 118 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (122 bp):
GTTCATGTATAAATGAGTTTCTTAGTATAGCATTCACTACTAACCTGCAATTTTTTTTACTACAA
TCCTGTAGTAGGCTAATCATAATACAGAATTATGTAGGGGTCCATTTAAAAGCATGG
Found at i:1903211 original size:20 final size:20
Alignment explanation
Indices: 1903167--1903212 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1903157 TTCTACAACT
1903167 TGTATCGATACAACATGACAA
1 TGTATCGATACAACATGA-AA
*
1903188 TGTATCGATACATACGTG-AA
1 TGTATCGATACA-ACATGAAA
1903208 TGTAT
1 TGTAT
1903213 TAATACTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 12 0.52
22 4 0.17
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (20 bp):
TGTATCGATACAACATGAAA
Found at i:1905678 original size:25 final size:26
Alignment explanation
Indices: 1905650--1905698 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
1905640 TCAAAATAGT
* *
1905650 TCTTATTAGG-GATACTCCAACCCCA
1 TCTTATCAGGTGATACTACAACCCCA
*
1905675 TCTTCTCAGGTGATACTACAACCC
1 TCTTATCAGGTGATACTACAACCC
1905699 TGTTTTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.29
Consensus pattern (26 bp):
TCTTATCAGGTGATACTACAACCCCA
Found at i:1907564 original size:13 final size:13
Alignment explanation
Indices: 1907546--1907570 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1907536 CATTTTATGG
1907546 TGTATCGATACAA
1 TGTATCGATACAA
1907559 TGTATCGATACA
1 TGTATCGATACA
1907571 TACTATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1907586 original size:32 final size:33
Alignment explanation
Indices: 1907523--1907590 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
1907513 CGTTACAAGC
**
1907523 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
1907556 CAATGTATCGATACATACTAT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
1907588 CAA
1 CAA
1907591 GCTTAGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 14 0.42
33 19 0.58
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:1912692 original size:13 final size:13
Alignment explanation
Indices: 1912674--1912699 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1912664 CATTTTGGGA
1912674 TGTATCGATACAT
1 TGTATCGATACAT
1912687 TGTATCGATACAT
1 TGTATCGATACAT
1912700 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1912696 original size:33 final size:32
Alignment explanation
Indices: 1912654--1912717 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1912644 TACAAGCCAA
*
1912654 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
1912687 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
1912718 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:1912806 original size:20 final size:21
Alignment explanation
Indices: 1912759--1912811 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1912749 GCCAATGACC
*
1912759 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
1912780 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
1912800 TGTATCGATACA
1 TGTATCGATACA
1912812 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:1912817 original size:13 final size:13
Alignment explanation
Indices: 1912799--1912823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1912789 ACATTTGGTC
1912799 ATGTATCGATACA
1 ATGTATCGATACA
1912812 ATGTATCGATAC
1 ATGTATCGATAC
1912824 TATGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1912858 original size:20 final size:20
Alignment explanation
Indices: 1912835--1912873 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1912825 ATGCAATCTA
1912835 TATCGATACATTTGAAGGTG
1 TATCGATACATTTGAAGGTG
* *
1912855 TATCGATACTTTTTAAGGT
1 TATCGATACATTTGAAGGT
1912874 TTTGACCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (20 bp):
TATCGATACATTTGAAGGTG
Found at i:1915307 original size:13 final size:13
Alignment explanation
Indices: 1915289--1915326 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1915279 ATAAACCCTT
*
1915289 TGTATCGATACAC
1 TGTATCGATACAA
1915302 TGTATCGATACAA
1 TGTATCGATACAA
1915315 TGTATCGATACA
1 TGTATCGATACA
1915327 GAGAATGCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1915541 original size:8 final size:8
Alignment explanation
Indices: 1915523--1915553 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
1915513 TTTTCAGCAT
1915523 CAAATATCA
1 CAAA-ATCA
1915532 CAAAATCA
1 CAAAATCA
1915540 CAAAATCA
1 CAAAATCA
1915548 CAAAAT
1 CAAAAT
1915554 TTAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (8 bp):
CAAAATCA
Found at i:1921502 original size:13 final size:13
Alignment explanation
Indices: 1921484--1921509 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1921474 CATTTTGGGA
1921484 TGTATCGATACAT
1 TGTATCGATACAT
1921497 TGTATCGATACAT
1 TGTATCGATACAT
1921510 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1921508 original size:33 final size:32
Alignment explanation
Indices: 1921464--1921527 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
1921454 TACAAGCCAA
*
1921464 TGTATCAATACATTTTGGGATGTATCGATACAT
1 TGTATCAATACATCTTGGG-TGTATCGATACAT
* *
1921497 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCAATACATCTTGGGTGTATCGATACA
1921528 AATAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (32 bp):
TGTATCAATACATCTTGGGTGTATCGATACAT
Found at i:1921648 original size:20 final size:19
Alignment explanation
Indices: 1921623--1921674 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
1921613 ATCAATACAA
*
1921623 TGTATCGATACTGTGCAATT
1 TGTATCGATACTGTG-AATG
*
1921643 TGTATCGATACATTTGAATG
1 TGTATCGATAC-TGTGAATG
1921663 TGTATCGATACT
1 TGTATCGATACT
1921675 TTTTAGGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 25 0.86
21 3 0.10
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.40
Consensus pattern (19 bp):
TGTATCGATACTGTGAATG
Found at i:1928583 original size:20 final size:20
Alignment explanation
Indices: 1928547--1928589 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
1928537 ATGTCAAAAC
1928547 AAATTAACAATAAAATGTCAA
1 AAATTAACAATAAAATGT-AA
*
1928568 AAATTACCAA-AAAATGTAA
1 AAATTAACAATAAAATGTAA
1928587 AAA
1 AAA
1928590 AAAAAGTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 7 0.33
21 9 0.43
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (20 bp):
AAATTAACAATAAAATGTAA
Found at i:1928590 original size:20 final size:21
Alignment explanation
Indices: 1928547--1928590 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
1928537 ATGTCAAAAC
*
1928547 AAATTAACAATAAAATGTCAA
1 AAATTAACAATAAAATGTAAA
*
1928568 AAATTACCAA-AAAATGTAAA
1 AAATTAACAATAAAATGTAAA
1928588 AAA
1 AAA
1928591 AAAAGTTCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.66, C:0.09, G:0.05, T:0.20
Consensus pattern (21 bp):
AAATTAACAATAAAATGTAAA
Found at i:1928591 original size:21 final size:22
Alignment explanation
Indices: 1928537--1928591 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
1928527 ATGGCATCCT
1928537 ATGTCAAAACAAATTAACAATAAA
1 ATGT-AAAA-AAATTAACAATAAA
* *
1928561 ATGT-CAAAAATTACCAA-AAA
1 ATGTAAAAAAATTAACAATAAA
1928581 ATGTAAAAAAA
1 ATGTAAAAAAA
1928592 AAAGTTCTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 7 0.26
21 14 0.52
22 2 0.07
24 4 0.15
ACGTcount: A:0.64, C:0.11, G:0.05, T:0.20
Consensus pattern (22 bp):
ATGTAAAAAAATTAACAATAAA
Found at i:1929405 original size:21 final size:22
Alignment explanation
Indices: 1929372--1929426 Score: 103
Period size: 21 Copynumber: 2.5 Consensus size: 22
1929362 ATCACTATTA
1929372 ATCACTGTTCATGTATCGATAC
1 ATCACTGTTCATGTATCGATAC
1929394 ATCACT-TTCATGTATCGATAC
1 ATCACTGTTCATGTATCGATAC
1929415 ATCACTGTTCAT
1 ATCACTGTTCAT
1929427 CATTGTTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (22 bp):
ATCACTGTTCATGTATCGATAC
Found at i:1929517 original size:13 final size:13
Alignment explanation
Indices: 1929499--1929525 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1929489 TCACTATTCA
1929499 TGTATCGATACAC
1 TGTATCGATACAC
1929512 TGTATCGATACAC
1 TGTATCGATACAC
1929525 T
1 T
1929526 ATAAATACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1930057 original size:34 final size:35
Alignment explanation
Indices: 1929994--1930060 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1929984 CTAAGTGATT
1929994 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
1930030 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
1930061 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:1931177 original size:21 final size:21
Alignment explanation
Indices: 1931151--1931192 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1931141 AATCAACCGT
* *
1931151 TCAAGATGATGATGAAGATGA
1 TCAAGAGGATGATGAAAATGA
*
1931172 TCAAGAGGTTGATGAAAATGA
1 TCAAGAGGATGATGAAAATGA
1931193 AGAAATGGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.24
Consensus pattern (21 bp):
TCAAGAGGATGATGAAAATGA
Found at i:1931754 original size:84 final size:84
Alignment explanation
Indices: 1931581--1931741 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 84
1931571 ACTCAAAGAA
* * * * * *
1931581 GAAAATAAATCAATAAGTGTAGAGAATGATTTTCTTGAAAAGAAATTAAGTGAATTAGAGAAGAA
1 GAAAATAAATCAATAAGTGTAGAAAATAATTTTCTTAAAAAGAAAATAAATGAAATAGAGAAGAA
*
1931646 TATGAAAGAGTTACAAAAT
66 TAAGAAAGAGTTACAAAAT
* * *
1931665 GAAAATAAATCAATGAGTTTAGAAAATAATTCTT-TTAAAAAGAAAATAAATGAAATAGAGGAGA
1 GAAAATAAATCAATAAGTGTAGAAAATAATT-TTCTTAAAAAGAAAATAAATGAAATAGAGAAGA
1931729 A-AAGAAATGAGTT
65 ATAAGAAA-GAGTT
1931742 GCAAGTGGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
83 5 0.08
84 58 0.89
85 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.25
Consensus pattern (84 bp):
GAAAATAAATCAATAAGTGTAGAAAATAATTTTCTTAAAAAGAAAATAAATGAAATAGAGAAGAA
TAAGAAAGAGTTACAAAAT
Found at i:1933292 original size:13 final size:13
Alignment explanation
Indices: 1933274--1933298 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1933264 TTTTCCAGAT
1933274 TGTATCGATACAA
1 TGTATCGATACAA
1933287 TGTATCGATACA
1 TGTATCGATACA
1933299 TTGCTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1934691 original size:655 final size:655
Alignment explanation
Indices: 1933442--1934752 Score: 2622
Period size: 655 Copynumber: 2.0 Consensus size: 655
1933432 CATTCGTTAA
1933442 TCTTTCAACATTTGGTATCACTTCATTAATTGGTAACAATTGGTACAATCTCCTTCATATTTTAA
1 TCTTTCAACATTTGGTATCACTTCATTAATTGGTAACAATTGGTACAATCTCCTTCATATTTTAA
1933507 ATCAAAGTCTTTCAAAACTCTTACCAAACTTCTCAAATTCTCAAAAACACCATTTTTCAAACCAA
66 ATCAAAGTCTTTCAAAACTCTTACCAAACTTCTCAAATTCTCAAAAACACCATTTTTCAAACCAA
1933572 ATCAAATCTGTTTGAAATGTTTTTCTACTCTTTTTATATCAAACACTAGGATTTGTGTGCTGGTT
131 ATCAAATCTGTTTGAAATGTTTTTCTACTCTTTTTATATCAAACACTAGGATTTGTGTGCTGGTT
1933637 TCATTCAAAAATATTTGTAATCAAAATTATAGCTTTTAAAACACACAACTTGCTCGACAAAATTC
196 TCATTCAAAAATATTTGTAATCAAAATTATAGCTTTTAAAACACACAACTTGCTCGACAAAATTC
1933702 CCTAACCAGAAAACTCATACTCGGTTAGTGTGTCCACATGTTCAACACATTTTTTTCTCGAGTAA
261 CCTAACCAGAAAACTCATACTCGGTTAGTGTGTCCACATGTTCAACACATTTTTTTCTCGAGTAA
1933767 TGCTTTTCGACGCTTTTTAAGTTAAGATGTGTTTATAAGTCTATGAATGTTTAGGACTAATCATA
326 TGCTTTTCGACGCTTTTTAAGTTAAGATGTGTTTATAAGTCTATGAATGTTTAGGACTAATCATA
1933832 GTTAGAATAACTTTTTGTGCTTTAAATGCTTATATGTGAATTTCTATCTATGATTGCATGCCTTC
391 GTTAGAATAACTTTTTGTGCTTTAAATGCTTATATGTGAATTTCTATCTATGATTGCATGCCTTC
1933897 ATGAAACTTTTACTCCTTGATACTTTATTGCTTATTCATGAATGCTTATTTTTAATTTGCCCTTA
456 ATGAAACTTTTACTCCTTGATACTTTATTGCTTATTCATGAATGCTTATTTTTAATTTGCCCTTA
1933962 TATTTGCATATTTTATTAATTGAGTTCACCCCACCTCCTCTTGGTTTTGATATAACAAAAAGGGG
521 TATTTGCATATTTTATTAATTGAGTTCACCCCACCTCCTCTTGGTTTTGATATAACAAAAAGGGG
1934027 GAGAGATTATTGGTATAAATTTGGTTTTATCAAACTTAGCTTATAACAAAAAGGGGAAGAGATTA
586 GAGAGATTATTGGTATAAATTTGGTTTTATCAAACTTAGCTTATAACAAAAAGGGGAAGAGATTA
1934092 TTGTT
651 TTGTT
1934097 TCTTTCAACATTTGGTATCACTTCATTAATTGGTAACAATTGGTACAATCTCCTTCATATTTTAA
1 TCTTTCAACATTTGGTATCACTTCATTAATTGGTAACAATTGGTACAATCTCCTTCATATTTTAA
1934162 ATCAAAGTCTTTCAAAACTCTTACCAAACTTCTCAAATTCTCAAAAACACCATTTTTCAAACCAA
66 ATCAAAGTCTTTCAAAACTCTTACCAAACTTCTCAAATTCTCAAAAACACCATTTTTCAAACCAA
1934227 ATCAAATCTGTTTGAAATGTTTTTCTACTCTTTTTATATCAAACACTAGGATTTGTGTGCTGGTT
131 ATCAAATCTGTTTGAAATGTTTTTCTACTCTTTTTATATCAAACACTAGGATTTGTGTGCTGGTT
1934292 TCATTCAAAAATATTTGTAATCAAAATTATAGCTTTTAAAACACACAACTTGCTCGACAAAATTC
196 TCATTCAAAAATATTTGTAATCAAAATTATAGCTTTTAAAACACACAACTTGCTCGACAAAATTC
1934357 CCTAACCAGAAAACTCATACTCGGTTAGTGTGTCCACATGTTCAACACATTTTTTTCTCGAGTAA
261 CCTAACCAGAAAACTCATACTCGGTTAGTGTGTCCACATGTTCAACACATTTTTTTCTCGAGTAA
1934422 TGCTTTTCGACGCTTTTTAAGTTAAGATGTGTTTATAAGTCTATGAATGTTTAGGACTAATCATA
326 TGCTTTTCGACGCTTTTTAAGTTAAGATGTGTTTATAAGTCTATGAATGTTTAGGACTAATCATA
1934487 GTTAGAATAACTTTTTGTGCTTTAAATGCTTATATGTGAATTTCTATCTATGATTGCATGCCTTC
391 GTTAGAATAACTTTTTGTGCTTTAAATGCTTATATGTGAATTTCTATCTATGATTGCATGCCTTC
1934552 ATGAAACTTTTACTCCTTGATACTTTATTGCTTATTCATGAATGCTTATTTTTAATTTGCCCTTA
456 ATGAAACTTTTACTCCTTGATACTTTATTGCTTATTCATGAATGCTTATTTTTAATTTGCCCTTA
1934617 TATTTGCATATTTTATTAATTGAGTTCACCCCACCTCCTCTTGGTTTTGATATAACAAAAAGGGG
521 TATTTGCATATTTTATTAATTGAGTTCACCCCACCTCCTCTTGGTTTTGATATAACAAAAAGGGG
1934682 GAGAGATTATTGGTATAAATTTGGTTTTATCAAACTTAGCTTATAACAAAAAGGGGAAGAGATTA
586 GAGAGATTATTGGTATAAATTTGGTTTTATCAAACTTAGCTTATAACAAAAAGGGGAAGAGATTA
1934747 TTGTT
651 TTGTT
1934752 T
1 T
1934753 ATTGGTTTAA
Statistics
Matches: 656, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
655 656 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.40
Consensus pattern (655 bp):
TCTTTCAACATTTGGTATCACTTCATTAATTGGTAACAATTGGTACAATCTCCTTCATATTTTAA
ATCAAAGTCTTTCAAAACTCTTACCAAACTTCTCAAATTCTCAAAAACACCATTTTTCAAACCAA
ATCAAATCTGTTTGAAATGTTTTTCTACTCTTTTTATATCAAACACTAGGATTTGTGTGCTGGTT
TCATTCAAAAATATTTGTAATCAAAATTATAGCTTTTAAAACACACAACTTGCTCGACAAAATTC
CCTAACCAGAAAACTCATACTCGGTTAGTGTGTCCACATGTTCAACACATTTTTTTCTCGAGTAA
TGCTTTTCGACGCTTTTTAAGTTAAGATGTGTTTATAAGTCTATGAATGTTTAGGACTAATCATA
GTTAGAATAACTTTTTGTGCTTTAAATGCTTATATGTGAATTTCTATCTATGATTGCATGCCTTC
ATGAAACTTTTACTCCTTGATACTTTATTGCTTATTCATGAATGCTTATTTTTAATTTGCCCTTA
TATTTGCATATTTTATTAATTGAGTTCACCCCACCTCCTCTTGGTTTTGATATAACAAAAAGGGG
GAGAGATTATTGGTATAAATTTGGTTTTATCAAACTTAGCTTATAACAAAAAGGGGAAGAGATTA
TTGTT
Found at i:1935803 original size:21 final size:22
Alignment explanation
Indices: 1935770--1935824 Score: 94
Period size: 21 Copynumber: 2.5 Consensus size: 22
1935760 ATCACTATTA
*
1935770 ATCACTGTTCATGTATCGATAC
1 ATCACTATTCATGTATCGATAC
1935792 ATCACT-TTCATGTATCGATAC
1 ATCACTATTCATGTATCGATAC
1935813 ATCACTATTCAT
1 ATCACTATTCAT
1935825 CATTGTTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (22 bp):
ATCACTATTCATGTATCGATAC
Found at i:1935915 original size:13 final size:13
Alignment explanation
Indices: 1935897--1935936 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
1935887 TCACTATTCA
*
1935897 TGTATCGATACAT
1 TGTATCGATACAC
1935910 TGTATCGATACAC
1 TGTATCGATACAC
1935923 TGTATCGATACAC
1 TGTATCGATACAC
1935936 T
1 T
1935937 ATAAATAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAC
Done.