Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 26 of 47
Found at i:4038822 original size:39 final size:38
Alignment explanation
Indices: 4038763--4038948 Score: 183
Period size: 39 Copynumber: 4.6 Consensus size: 38
4038753 TCTTTAAGAA
*
4038763 CAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCATAAGC
*
4038801 CTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCGTTAAGAC
1 C-AATATCGCTGGCCTTGAATCAGCACATTGGCA---------TAAG-C
* * *
4038850 CAATGTTGCTGGCCTTGAATCAGCATATTGGCATAAGCC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCATAAG-C
* * *
4038889 CACTATCGCTGGCCTTGAATCAGCACATTGACACAAGC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCATAAGC
*
4038927 CAGTATCGCTGGCCTTGAATCA
1 CAATATCGCTGGCCTTGAATCA
4038949 ACATACTGGC
Statistics
Matches: 125, Mismatches: 12, Indels: 22
0.79 0.08 0.14
Matches are distributed among these distances:
38 23 0.18
39 66 0.53
48 34 0.27
49 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (38 bp):
CAATATCGCTGGCCTTGAATCAGCACATTGGCATAAGC
Found at i:4038916 original size:126 final size:126
Alignment explanation
Indices: 4038768--4039007 Score: 374
Period size: 126 Copynumber: 1.9 Consensus size: 126
4038758 AAGAACAATG
* * * *
4038768 TCGCTGGCCTTGAATCAGCACATTGGCATAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGG
1 TCGCTGGCCTTGAATCAGCACATTGACACAAGCC-AATATCGCTGGCCTTGAATCAACATACTGG
* * * *
4038833 CACCTT-GTCGTTAAGACCAATGTTGCTGGCCTTGAATCAGCATATTGGCATAAGCCCACTA
65 CACCTTCATCGTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGCATAAGCCCACTA
*
4038894 TCGCTGGCCTTGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTGAATCAACATACTGGC
1 TCGCTGGCCTTGAATCAGCACATTGACACAAGCCAATATCGCTGGCCTTGAATCAACATACTGGC
*
4038959 ACCTTCATCTTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGC
66 ACCTTCATCGTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGC
4039008 GCCTTCGTCA
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
125 33 0.32
126 70 0.68
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (126 bp):
TCGCTGGCCTTGAATCAGCACATTGACACAAGCCAATATCGCTGGCCTTGAATCAACATACTGGC
ACCTTCATCGTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGCATAAGCCCACTA
Found at i:4039247 original size:33 final size:33
Alignment explanation
Indices: 4039210--4039403 Score: 163
Period size: 33 Copynumber: 6.0 Consensus size: 33
4039200 CGATACATTT
*
4039210 CTTGTCCTTTTTAAGCCCACAACAT-CGTGGCAC
1 CTTGTCCTTTTTAAGTCCACAAC-TCCGTGGCAC
* **
4039243 CTTGTCCCTTTTAAGTCCACAACTCCGTGGCGT
1 CTTGTCCTTTTTAAGTCCACAACTCCGTGGCAC
* * *
4039276 CTTTTCTTTTTTAAGTCCACGACTCCGTGGCA-
1 CTTGTCCTTTTTAAGTCCACAACTCCGTGGCAC
* * *
4039308 -----CCTTTTTAAGCCCACAACTCCATGGTACTC
1 CTTGTCCTTTTTAAGTCCACAACTCCGTGG--CAC
*
4039338 CTTGTTCC-TTTTATGTCCACAACTCCGTGGCAC
1 CTTG-TCCTTTTTAAGTCCACAACTCCGTGGCAC
* * *
4039371 CTT-TTCTTTTTAAGTCCACGACTCTGTGGCAC
1 CTTGTCCTTTTTAAGTCCACAACTCCGTGGCAC
4039403 C
1 C
4039404 CTTTTAAGCT
Statistics
Matches: 128, Mismatches: 22, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
27 21 0.16
29 1 0.01
31 2 0.02
32 24 0.19
33 59 0.46
35 19 0.15
36 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.15, T:0.35
Consensus pattern (33 bp):
CTTGTCCTTTTTAAGTCCACAACTCCGTGGCAC
Found at i:4039253 original size:34 final size:32
Alignment explanation
Indices: 4039210--4039429 Score: 147
Period size: 33 Copynumber: 7.0 Consensus size: 32
4039200 CGATACATTT
4039210 CTTGTCCTTTTTAAGCCCACAACAT-CGTGGCAC
1 CTTGTCC-TTTTAAGCCCACAAC-TCCGTGGCAC
* **
4039243 CTTGTCCCTTTTAAGTCCACAACTCCGTGGCGT
1 CTTGT-CCTTTTAAGCCCACAACTCCGTGGCAC
* * * *
4039276 CTTTTCTTTTTTAAGTCCACGACTCCGTGGCAC
1 CTTGTC-CTTTTAAGCCCACAACTCCGTGGCAC
* *
4039309 C---T--TTTTAAGCCCACAACTCCATGGTACTC
1 CTTGTCCTTTTAAGCCCACAACTCCGTGG--CAC
* *
4039338 CTTGTTCCTTTTATGTCCACAACTCCGTGGCAC
1 CTTG-TCCTTTTAAGCCCACAACTCCGTGGCAC
* * * * *
4039371 CTTTTCTTTTTAAGTCCACGACTCTGTGGCA-
1 CTTGTCCTTTTAAGCCCACAACTCCGTGGCAC
*
4039402 C----CCTTTTAAGCTCACAACTCCGTGGCAC
1 CTTGTCCTTTTAAGCCCACAACTCCGTGGCAC
4039430 TCTTTTTCCC
Statistics
Matches: 149, Mismatches: 26, Indels: 29
0.73 0.13 0.14
Matches are distributed among these distances:
27 40 0.27
29 3 0.02
30 1 0.01
31 1 0.01
32 25 0.17
33 58 0.39
34 2 0.01
35 19 0.13
ACGTcount: A:0.18, C:0.33, G:0.15, T:0.34
Consensus pattern (32 bp):
CTTGTCCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:4039322 original size:27 final size:27
Alignment explanation
Indices: 4039251--4039523 Score: 125
Period size: 27 Copynumber: 9.1 Consensus size: 27
4039241 ACCTTGTCCC
*
4039251 TTTTAAGTCCACAACTCCGTGGCGTCTTTTCTT
1 TTTTAAGTCCACAACTCCGTGGC-AC----C-T
*
4039284 TTTTAAGTCCACGACTCCGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
* * *
4039311 TTTTAAGCCCACAACTCCATGGTACTCCTTGTT
1 TTTTAAGTCCACAACTCCGTGG--CACC----T
*
4039344 CCTTTTATGTCCACAACTCCGTGGCACCTTTTCT
1 --TTTTAAGTCCACAACTCCGTGGCA-C----CT
* * *
4039378 TTTTAAGTCCACGACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCT
4039405 TTTTAAG-CTCACAACTCCGTGGCACTCTTTT
1 TTTTAAGTC-CACAACTCCGTGGCAC-C---T
* ** *
4039436 TCCCTTTAAGTCCATAACTCAATGGCACCC
1 T---TTTAAGTCCACAACTCCGTGGCACCT
* * *
4039466 TTTTAAATCCATAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCT
* * *
4039493 TTTTAAATCCACAACACCGTGGCATCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
4039520 TTTT
1 TTTT
4039524 CCTTTTAAGC
Statistics
Matches: 190, Mismatches: 28, Indels: 50
0.71 0.10 0.19
Matches are distributed among these distances:
26 1 0.01
27 92 0.48
28 2 0.01
29 3 0.02
30 1 0.01
31 2 0.01
32 22 0.12
33 25 0.13
34 21 0.11
35 20 0.11
38 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.35
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCT
Found at i:4039442 original size:94 final size:93
Alignment explanation
Indices: 4039218--4039551 Score: 360
Period size: 93 Copynumber: 3.6 Consensus size: 93
4039208 TTCTTGTCCT
* * **
4039218 TTTTAAGCCCACAACAT-CGTGGCAC-CTTGTCCCTTTTAAGTCCACAACTCCGTGGCGTCTTTT
1 TTTTAAGCCCACAAC-TCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTT
*
4039281 CTTTTTTAAGTCCACGACTCCGTGGCACCT
65 C-TTTTTAAGTCCACGACTCCGTGGCACCC
* * * *
4039311 TTTTAAGCCCACAACTCCATGGTACTCCTTGTTCCTTTTATGTCCACAACTCCGTGGCACCTTTT
1 TTTTAAGCCCACAACTCCGTGGCACT-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTT
*
4039376 CTTTTTAAGTCCACGACTCTGTGGCACCC
65 CTTTTTAAGTCCACGACTCCGTGGCACCC
* * * **
4039405 TTTTAAGCTCACAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTCAATGGCACC----C
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
* **
4039466 -TTTTAAATCCATAACTCCGTGGCACCC
66 TTTTTAAGTCCACGACTCCGTGGCACCC
** * * * * *
4039493 TTTTAAATCCACAACACCGTGGCA-TCTTTTTCCTTTTAAGCCCAGAAGTCAGTGGCACC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACC
4039552 CCTTTCAAAG
Statistics
Matches: 208, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
87 30 0.14
88 43 0.21
89 1 0.00
92 1 0.00
93 49 0.24
94 49 0.24
95 35 0.17
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (93 bp):
TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
TTTTTAAGTCCACGACTCCGTGGCACCC
Found at i:4039465 original size:61 final size:60
Alignment explanation
Indices: 4039344--4039496 Score: 175
Period size: 61 Copynumber: 2.5 Consensus size: 60
4039334 ACTCCTTGTT
** ** * **
4039344 CCTTTTATGTCCACAACTCCGTGGCACC-TTTTCTTTTTAAGTCCACGACTCTGTGGCAC
1 CCTTTTAAATCCACAACTCCGTGGCACCTTTTTCCCTTTAAGTCCACAACTCAATGGCAC
* *
4039403 CCTTTT-AAGCTCACAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTCAATGGCAC
1 CCTTTTAAATC-CACAACTCCGTGGCAC-CTTTTTCCCTTTAAGTCCACAACTCAATGGCAC
* *
4039464 CCTTTTAAATCCATAACTCCGTGGCACCCTTTT
1 CCTTTTAAATCCACAACTCCGTGGCACCTTTTT
4039497 AAATCCACAA
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
58 1 0.01
59 22 0.28
60 6 0.08
61 46 0.59
62 3 0.04
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (60 bp):
CCTTTTAAATCCACAACTCCGTGGCACCTTTTTCCCTTTAAGTCCACAACTCAATGGCAC
Found at i:4039556 original size:88 final size:88
Alignment explanation
Indices: 4039391--4039552 Score: 229
Period size: 88 Copynumber: 1.9 Consensus size: 88
4039381 TAAGTCCACG
* * * *
4039391 ACTCTGTGGCACCCTTTTAAGCTCACAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTC
1 ACTCCGTGGCACCCTTTTAAGCTCACAACACCGTGGCACTCTTTTTCCCTTTAAGCCCAGAACTC
4039456 AATGGCACCCTTTTAAATCCATA
66 AATGGCACCCTTTTAAATCCATA
* * *
4039479 ACTCCGTGGCACCCTTTTAA-ATCCACAACACCGTGGCA-TCTTTTTCCTTTTAAGCCCAGAAGT
1 ACTCCGTGGCACCCTTTTAAGCT-CACAACACCGTGGCACTCTTTTTCCCTTTAAGCCCAGAACT
*
4039542 CAGTGGCACCC
65 CAATGGCACCC
4039553 CTTTCAAAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
87 32 0.49
88 33 0.51
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (88 bp):
ACTCCGTGGCACCCTTTTAAGCTCACAACACCGTGGCACTCTTTTTCCCTTTAAGCCCAGAACTC
AATGGCACCCTTTTAAATCCATA
Found at i:4039583 original size:28 final size:29
Alignment explanation
Indices: 4039530--4039624 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 29
4039520 TTTTCCTTTT
* * *
4039530 AAGCCCAGAAGTCAGTGGCACCCCTTTC-A
1 AAGCCCACAAGTCATTGGCA-ACCTTTCAA
4039559 AAGCCCACAAGTCATTGGCAACC-TTCAA
1 AAGCCCACAAGTCATTGGCAACCTTTCAA
* *
4039587 AAGCACACAAGT--TGGTGCAACCCTTTCAA
1 AAGCCCACAAGTCATTG-GCAA-CCTTTCAA
4039616 AAGCCCACA
1 AAGCCCACA
4039625 CAAGTTGGTG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.04
27 7 0.12
28 16 0.29
29 31 0.55
ACGTcount: A:0.34, C:0.33, G:0.17, T:0.17
Consensus pattern (29 bp):
AAGCCCACAAGTCATTGGCAACCTTTCAA
Found at i:4039606 original size:27 final size:30
Alignment explanation
Indices: 4039551--4039634 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 30
4039541 TCAGTGGCAC
*
4039551 CCCTTTC-AAAGCC-CACAAGTCATTG-GCAA
1 CCCTTTCAAAAGCCACACAAGT--TGGTGCAA
4039580 -CC-TTCAAAAG-CACACAAGTTGGTGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGTGCAA
4039607 CCCTTTCAAAAGCCCACACAAGTTGGTG
1 CCCTTTCAAAAG-CCACACAAGTTGGTG
4039635 GCGTCTTCTT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
26 2 0.04
27 8 0.17
28 15 0.32
29 8 0.17
31 14 0.30
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (30 bp):
CCCTTTCAAAAGCCACACAAGTTGGTGCAA
Found at i:4039761 original size:39 final size:39
Alignment explanation
Indices: 4039695--4040195 Score: 243
Period size: 39 Copynumber: 11.7 Consensus size: 39
4039685 CCTTTATCTT
* *
4039695 TAAGACCAATGTCGCTGGCCTTAAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4039734 TAAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
*
4039773 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4039821 TAAG-CCTAATATCGCTGGCCTTGAATTAGCATATTGGCA
1 TAAGACC-AATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4039860 CCTTGTCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCGCATTGGCA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * * * * *
4039908 TAAGCCCAATATCGCTGGCGTTGAATTAACATATTGGTACCTTGTCTT
1 TAAGACCAATATCGCTGGCCTTGAA-T--C--A---GCACATTGGC-A
* * *
4039956 TAAGACCAATGTTGCTGGCCTTGAATCAGCGCATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4039995 TAAG-CTTAATATCGCTGGCCTTGAATTAGCATATTGGCA
1 TAAGAC-CAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4040034 CCTTGTCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCGCATTGGCA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
4040082 TAAGCCCAATATCGCTGGCGTTGAATTAACATATTGGCACCTTGTCTT
1 TAAGACCAATATCGCTGGCCTTGAA-T--C--A---GCACATTGGC-A
* *
4040130 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGACA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4040169 CAAG-CCAGTATCGCTGGCCTTGAATCA
1 TAAGACCAATATCGCTGGCCTTGAATCA
4040196 ACATACTGGC
Statistics
Matches: 349, Mismatches: 64, Indels: 99
0.68 0.12 0.19
Matches are distributed among these distances:
38 24 0.07
39 143 0.41
40 16 0.05
42 2 0.01
43 2 0.01
44 2 0.01
45 2 0.01
47 15 0.04
48 140 0.40
49 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (39 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4039814 original size:87 final size:87
Alignment explanation
Indices: 4039646--4040254 Score: 914
Period size: 87 Copynumber: 7.0 Consensus size: 87
4039636 CGTCTTCTTC
* * * *
4039646 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGGACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCT
*
4039711 GGCCTTAAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
* *
4039734 TAAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
4039799 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* *
4039821 TAAGCCTAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
4039886 GCCTTGAATCAGCGCATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * * *
4039908 TAAGCCCAATATCGCTGGCGTTGAATTAACATATTGGTACCTTGTCTTTAAGACCAATGTTGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
4039973 GCCTTGAATCAGCGCATTGGCA
66 GCCTTGAATCAGCACATTGGCA
** *
4039995 TAAGCTTAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
4040060 GCCTTGAATCAGCGCATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* *
4040082 TAAGCCCAATATCGCTGGCGTTGAATTAACATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
4040147 GCCTTGAATCAGCACATTGACA
66 GCCTTGAATCAGCACATTGGCA
* * * * * * *
4040169 CAAG-CCAGTATCGCTGGCCTTGAATCAACATACTGGCACCTTTATCTTTAAGACCAATATCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCT
* *
4040233 GGCCTTGAATCAGAATATTGGC
65 GGCCTTGAATCAGCACATTGGC
4040255 GCCTTCGTCA
Statistics
Matches: 484, Mismatches: 36, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
86 32 0.07
87 414 0.86
88 38 0.08
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:4040494 original size:33 final size:32
Alignment explanation
Indices: 4040461--4040796 Score: 248
Period size: 27 Copynumber: 10.9 Consensus size: 32
4040451 ACATTTCTTG
*
4040461 TCCCTTTTAAGTCCACAACTCCGTGGAACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
*
4040493 GTCCCTTTTAAGTCCACAACTCCGTAGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4040526 TTCTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4040554 -CCCTTTTAAGGCCACAACTCCATGGTACACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGG--CACCTT
* *
4040587 GTTCCTTTTAAGTCCACAACTCCATGGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4040620 TTCTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
4040648 -CCCTTTTAAG-CTCACAACTCCGTGGCACTCTTT
1 TCCCTTTTAAGTC-CACAACTCCGTGGCAC-C-TT
*
4040681 TCCC-TTTAAGTCCACAACTCAGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4040708 -CCCTTTTAAATCCATAACTCCGTGGCA-C--
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4040736 T--CTTTTAAGTCTACAACTTCGTGGCATCTTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCA-CCTT
* * * *
4040767 TTCCTTTTAAGCCCACAAGTCAGTGGCACC
1 TCCCTTTTAAGTCCACAACTCCGTGGCACC
4040797 CCTTTCAAAG
Statistics
Matches: 243, Mismatches: 34, Indels: 53
0.74 0.10 0.16
Matches are distributed among these distances:
26 4 0.02
27 83 0.34
29 2 0.01
31 1 0.00
32 50 0.21
33 76 0.31
34 4 0.02
35 23 0.09
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (32 bp):
TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
Found at i:4040561 original size:59 final size:59
Alignment explanation
Indices: 4040495--4040797 Score: 173
Period size: 60 Copynumber: 5.1 Consensus size: 59
4040485 GGAACCTTGT
* * *
4040495 CCCTTTTAAGTCCACAACTCCGTAGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
*
4040554 CCCTTTTAAGGCCACAACTCCATGGTA-CACCTTGTTCCTTTTAAGTCCACAACTCCATGGCA
1 CCCTTTTAAGTCCACAACTCC---GTAGCACCTT-TTCCTTTTAAGTCCACAACTCCATGGCA
* * *
4040616 CCTTTTCTTTTTAAGTCCACGACTCCGTGGCA-C----CCTTTTAAG-CTCACAACTCCGTGGCA
1 CC----C-TTTTAAGTCCACAACTCCGTAGCACCTTTTCCTTTTAAGTC-CACAACTCCATGGCA
* * * * * *
4040675 CTCTTTTCCCTTTAAGTCCACAACTCAGTGGCA-C----CCTTTTAAATCCATAACTCCGTGGCA
1 --C----CCTTTTAAGTCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
* * * * * * *
4040735 CTCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCCCACAAGT-CAGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTAGCA-CCTTTTCCTTTTAAGTCCACAACTCCA-TGGCA
4040795 CCC
1 CCC
4040798 CTTTCAAAGC
Statistics
Matches: 194, Mismatches: 25, Indels: 49
0.72 0.09 0.18
Matches are distributed among these distances:
54 21 0.11
58 2 0.01
59 44 0.23
60 65 0.34
61 9 0.05
62 30 0.15
64 3 0.02
65 3 0.02
66 1 0.01
67 16 0.08
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (59 bp):
CCCTTTTAAGTCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
Found at i:4040604 original size:35 final size:32
Alignment explanation
Indices: 4040463--4040714 Score: 222
Period size: 33 Copynumber: 8.0 Consensus size: 32
4040453 ATTTCTTGTC
* * *
4040463 CCTTTTAAGTCCACAACTCCGTGGAACCTTGTC
1 CCTTTTAAGTCCACAACTCCATGGCACCTT-TT
* *
4040496 CCTTTTAAGTCCACAACTCCGTAGCACCTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * *
4040528 CTTTTTAAGTCCACGACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
*
4040555 CCTTTTAAGGCCACAACTCCATGGTACACCTTGTT
1 CCTTTTAAGTCCACAACTCCATGG--CACCTT-TT
4040590 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * *
4040622 CTTTTTAAGTCCACGACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
*
4040649 CCTTTTAAG-CTCACAACTCCGTGGCACTCTTTT
1 CCTTTTAAGTC-CACAACTCCATGGCAC-CTTTT
*
4040682 CCCTTTAAGTCCACAACT-CAGTGGCACCCTTTT
1 CCTTTTAAGTCCACAACTCCA-TGGCA-CCTTTT
4040715 AAATCCATAA
Statistics
Matches: 183, Mismatches: 18, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
26 1 0.01
27 42 0.23
29 3 0.02
30 1 0.01
31 2 0.01
32 50 0.27
33 59 0.32
34 2 0.01
35 23 0.13
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (32 bp):
CCTTTTAAGTCCACAACTCCATGGCACCTTTT
Found at i:4040615 original size:62 final size:59
Alignment explanation
Indices: 4040495--4040621 Score: 168
Period size: 62 Copynumber: 2.1 Consensus size: 59
4040485 GGAACCTTGT
* * * *
4040495 CCCTTTTAAGTCCACAACTCCGTAGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCA
1 CCCTTTTAAGGCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
4040554 CCCTTTTAAGGCCACAACTCCATGGTA-CACCTTGTTCCTTTTAAGTCCACAACTCCATGGCA
1 CCCTTTTAAGGCCACAACTCC---GTAGCACCTT-TTCCTTTTAAGTCCACAACTCCATGGCA
4040616 -CCTTTT
1 CCCTTTT
4040622 CTTTTTAAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
59 20 0.33
61 12 0.20
62 28 0.47
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (59 bp):
CCCTTTTAAGGCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
Found at i:4040621 original size:94 final size:92
Alignment explanation
Indices: 4040462--4040784 Score: 392
Period size: 94 Copynumber: 3.5 Consensus size: 92
4040452 CATTTCTTGT
* * * * *
4040462 CCCTTTTAAGTCCACAACTCCGTGGAACCTTGTCCCTTTTAAGTCCACAACTCCGTAGCACCTTT
1 CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACCTTT
4040527 TCTTTTTAAGTCCACGACTCCGTGGCA
66 TCTTTTTAAGTCCACGACTCCGTGGCA
*
4040554 CCCTTTTAAGGCCACAACTCCATGGTACACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACCT
1 CCCTTTTAAGGCCACAACTCCGTGG--CACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACCT
4040619 TTTCTTTTTAAGTCCACGACTCCGTGGCA
64 TTTCTTTTTAAGTCCACGACTCCGTGGCA
*
4040648 CCCTTTTAA-GCTCACAACTCCGTGGCACTCTT-TTCCCTTTAAGTCCACAACT-CAGTGGCACC
1 CCCTTTTAAGGC-CACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCCA-TGGCACC
* **
4040710 ----C-TTTTAAATCCATAACTCCGTGGCA
63 TTTTCTTTTTAAGTCCACGACTCCGTGGCA
* * * * * * *
4040735 CTCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCCCACAA
1 CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAA
4040785 GTCAGTGGCA
Statistics
Matches: 206, Mismatches: 18, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
86 3 0.01
87 58 0.28
88 2 0.01
91 2 0.01
92 52 0.25
93 5 0.02
94 84 0.41
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.33
Consensus pattern (92 bp):
CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACCTTT
TCTTTTTAAGTCCACGACTCCGTGGCA
Found at i:4040708 original size:60 final size:60
Alignment explanation
Indices: 4040590--4040741 Score: 218
Period size: 60 Copynumber: 2.5 Consensus size: 60
4040580 ACACCTTGTT
* ** * *
4040590 CCTTTTAAGTCCACAACTCCATGGCAC-CTTTTCTTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
4040649 CCTTTTAAG-CTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
1 CCTTTTAAGTC-CACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
* *
4040709 CCTTTTAAATCCATAACTCCGTGGCACTCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTT
4040742 AAGTCTACAA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
58 1 0.01
59 24 0.29
60 57 0.69
61 1 0.01
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (60 bp):
CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
Found at i:4040828 original size:28 final size:29
Alignment explanation
Indices: 4040775--4040869 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
4040765 TTTTCCTTTT
*
4040775 AAGCCCACAAGTCAGTGGCACCCCTTTC-A
1 AAGCCCACAAGTCAGTGGCA-ACCTTTCAA
4040804 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTTCAA
* **
4040832 AAGCACACAAGTTGGT-GCAACCCTTTCAA
1 AAGCCCACAAGTCAGTGGCAA-CCTTTCAA
4040861 AAGCCCACA
1 AAGCCCACA
4040870 CAAGTTGGTG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 7 0.12
28 18 0.31
29 33 0.57
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.16
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCAACCTTTCAA
Found at i:4040873 original size:31 final size:30
Alignment explanation
Indices: 4040796--4040879 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 30
4040786 TCAGTGGCAC
**
4040796 CCCTTTC-AAAGCC-CACAAGTCAGTGGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGT-GCAA
4040825 -CC-TTCAAAAG-CACACAAGTTGGTGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGTGCAA
4040852 CCCTTTCAAAAGCCCACACAAGTTGGTG
1 CCCTTTCAAAAG-CCACACAAGTTGGTG
4040880 GCGTCTTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
27 8 0.17
28 17 0.36
29 8 0.17
31 14 0.30
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (30 bp):
CCCTTTCAAAAGCCACACAAGTTGGTGCAA
Found at i:4040999 original size:39 final size:39
Alignment explanation
Indices: 4040940--4041215 Score: 250
Period size: 39 Copynumber: 6.6 Consensus size: 39
4040930 CCTTTATCTT
* *
4040940 TAAGACCAATGTCGCTGGCCTTAAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4040979 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGG---C--A
* *
4041023 TCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 ----TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4041066 TAAG-CCGAATATCGTTGGCCTTGAATCAGCATATTGGCA
1 TAAGACC-AATATCGCTGGCCTTGAATCAGCACATTGGCA
*
4041105 CCTTTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4041153 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4041192 CAAG-CCAGTATCGCTGGCCTTGAA
1 TAAGACCAATATCGCTGGCCTTGAA
4041216 ATCAACCTGT
Statistics
Matches: 199, Mismatches: 18, Indels: 41
0.77 0.07 0.16
Matches are distributed among these distances:
38 21 0.11
39 106 0.53
42 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
48 66 0.33
49 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4041055 original size:48 final size:48
Alignment explanation
Indices: 4040979--4041332 Score: 255
Period size: 39 Copynumber: 7.8 Consensus size: 48
4040969 CACATTGGCA
* *
4040979 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTATCTT
* *
4041027 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG---C--A----
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTATCTT
* * *
4041066 TAAG-CCGAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
1 TAAGACC-AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTATCTT
*
4041114 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C--A----
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTATCTT
*
4041153 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C--A-C--
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTATCTT
* * *
4041193 -AAG-CCAGTATCGCTGGCCTTGAAATCAAC-CTGTTGGCACCTTTATCTT
1 TAAGACCAATATCGCTGGCCTTG-AATCAGCAC-ATTGGCACC-TTATCTT
* *
4041241 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T--T-ATCTT
* * **
4041293 TAAAGACCAATGTCGTTGGCCTTGTCTCAGCACATTGGCA
1 T-AAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
4041333 TTCTTCTTCA
Statistics
Matches: 248, Mismatches: 27, Indels: 57
0.75 0.08 0.17
Matches are distributed among these distances:
38 21 0.08
39 78 0.31
40 1 0.00
41 1 0.00
42 2 0.01
43 1 0.00
45 3 0.01
46 1 0.00
48 64 0.26
49 20 0.08
50 17 0.07
51 1 0.00
52 6 0.02
53 32 0.13
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (48 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTATCTT
Found at i:4041058 original size:87 final size:87
Alignment explanation
Indices: 4040891--4041188 Score: 515
Period size: 87 Copynumber: 3.4 Consensus size: 87
4040881 CGTCTTCTTC
* *
4040891 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGGACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAGACCAATGTCGCT
*
4040956 GGCCTTAAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
*
4040979 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGTTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTG
4041044 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * *
4041066 TAAGCCGAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTG
4041131 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
*
4041153 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
4041189 ACACAAGCCA
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
87 160 0.80
88 39 0.20
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:4041187 original size:126 final size:127
Alignment explanation
Indices: 4041027--4041278 Score: 373
Period size: 126 Copynumber: 2.0 Consensus size: 127
4041017 ACCTTATCTT
* * * * *
4041027 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCATAAGCCGAATATCGTTGGCCTTG-AA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGACACAAGCC-AATATCGCTGGCCTTGAAA
* *
4041091 TCAGCATATTGGCACCTTT-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
65 TCAACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4041153 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTGAAAT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGACACAAGCCAATATCGCTGGCCTTGAAAT
* * *
4041218 CAACCTGTTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGC
66 CAACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGC
4041279 GCCTTCGTCA
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
125 14 0.12
126 58 0.52
127 40 0.36
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (127 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGACACAAGCCAATATCGCTGGCCTTGAAAT
CAACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4041518 original size:33 final size:32
Alignment explanation
Indices: 4041485--4041820 Score: 257
Period size: 27 Copynumber: 10.9 Consensus size: 32
4041475 ACATTTCTTG
4041485 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
4041517 GTCCCTTTTAAGTCCACAACTCCGTGGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4041550 TTCTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4041578 -CCCTTTTAAGGCCACAACTCCATGGTACACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGG--CACCTT
*
4041611 GTTCCTTTTAAGTCCACAACTCCGTGGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4041644 TTCTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
4041672 -CCCTTTTAAG-CTCACAACTCCGTGGCACTCTTT
1 TCCCTTTTAAGTC-CACAACTCCGTGGCAC-C-TT
* * *
4041705 TCCC-TCTAAGTCCATAACTCAGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4041732 -CCCTTTTAAATCCATAACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4041759 -CCCTTTTAAGTCTACAACTTCGTGGCATCTTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCA-CCTT
* * * *
4041791 TTCCTTTTAAGCCCACAAGTCAGTGGCACC
1 TCCCTTTTAAGTCCACAACTCCGTGGCACC
4041821 CTTTTCAAAG
Statistics
Matches: 246, Mismatches: 33, Indels: 49
0.75 0.10 0.15
Matches are distributed among these distances:
26 4 0.02
27 85 0.35
29 2 0.01
32 52 0.21
33 77 0.31
34 4 0.02
35 22 0.09
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (32 bp):
TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
Found at i:4041645 original size:94 final size:92
Alignment explanation
Indices: 4041486--4041826 Score: 426
Period size: 94 Copynumber: 3.7 Consensus size: 92
4041476 CATTTCTTGT
* * *
4041486 CCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCTTT
4041551 TCTTTTTAAGTCCACGACTCCGTGGCA
66 TCTTTTTAAGTCCACGACTCCGTGGCA
* *
4041578 CCCTTTTAAGGCCACAACTCCATGGTACACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCT
1 CCCTTTTAAGGCCACAACTCCGTGG--CACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCT
4041643 TTTCTTTTTAAGTCCACGACTCCGTGGCA
64 TTTCTTTTTAAGTCCACGACTCCGTGGCA
* * *
4041672 CCCTTTTAA-GCTCACAACTCCGTGGCACTCTT-TTCCCTCTAAGTCCATAACTCAGTGGCACC-
1 CCCTTTTAAGGC-CACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCT
* **
4041734 ---C-TTTTAAATCCATAACTCCGTGGCA
64 TTTCTTTTTAAGTCCACGACTCCGTGGCA
* * * * * * *
4041759 CCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCCCACAAGTCAGTGGCACCCTT
1 CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCA-CCTT
4041824 TTC
65 TTC
4041827 AAAGCCTACA
Statistics
Matches: 218, Mismatches: 20, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
86 3 0.01
87 66 0.30
88 4 0.02
92 53 0.24
93 5 0.02
94 87 0.40
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (92 bp):
CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCTTT
TCTTTTTAAGTCCACGACTCCGTGGCA
Found at i:4041734 original size:60 final size:59
Alignment explanation
Indices: 4041486--4041765 Score: 223
Period size: 60 Copynumber: 4.6 Consensus size: 59
4041476 CATTTCTTGT
* * *
4041486 CCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCC-TCTAAGTCCACAACTCAGTGGCA
* * *
4041546 CCTTTTCTTTTTAAGTCCACGACTCCGTGGCACC-CTT---T-TAAGGCCACAACTCCA-TGGTA
1 CC----C-TTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTCTAAGTCCACAACT-CAGTGG--
4041605 CA
58 CA
** * * *
4041607 CCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCA
1 -C-----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTCTAAGTCCACAACTCAGTGGCA
*
4041672 CCCTTTTAAG-CTCACAACTCCGTGGCACTCTTTTCCCTCTAAGTCCATAACTCAGTGGCA
1 CCCTTTTAAGTC-CACAACTCCGTGGCAC-CTTTTCCCTCTAAGTCCACAACTCAGTGGCA
* *
4041732 CCCTTTTAAATCCATAACTCCGTGGCACCCTTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT
4041766 AAGTCTACAA
Statistics
Matches: 178, Mismatches: 18, Indels: 48
0.73 0.07 0.20
Matches are distributed among these distances:
58 1 0.01
59 40 0.22
60 57 0.32
61 4 0.02
62 26 0.15
63 3 0.02
64 3 0.02
65 27 0.15
66 2 0.01
67 15 0.08
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (59 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTCTAAGTCCACAACTCAGTGGCA
Found at i:4041880 original size:28 final size:29
Alignment explanation
Indices: 4041836--4041903 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 29
4041826 CAAAGCCTAC
*
4041836 AAGTTAGTGGCAACC-TTCAAAAGCACAT-
1 AAGTTGGT-GCAACCTTTCAAAAGCACATA
* *
4041864 AAGTTGGTGCAACCCTTTTAAAAGCCCATA
1 AAGTTGGTGCAA-CCTTTCAAAAGCACATA
4041894 CAAGTTGGTG
1 -AAGTTGGTG
4041904 GCGTCTTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 4 0.12
28 9 0.27
29 11 0.33
31 9 0.27
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (29 bp):
AAGTTGGTGCAACCTTTCAAAAGCACATA
Found at i:4041893 original size:29 final size:29
Alignment explanation
Indices: 4041818--4041903 Score: 77
Period size: 28 Copynumber: 2.9 Consensus size: 29
4041808 AGTCAGTGGC
* * * *
4041818 ACCCTTTTCAAAGCCTACAAGTTAGTGGCA
1 ACCCTTTTAAAAGCCCATAAGTTGGT-GCA
* *
4041848 A-CC-TTCAAAAGCACATAAGTTGGTGCA
1 ACCCTTTTAAAAGCCCATAAGTTGGTGCA
4041875 ACCCTTTTAAAAGCCCATACAAGTTGGTG
1 ACCCTTTTAAAAGCCCAT--AAGTTGGTG
4041904 GCGTCTTCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
27 4 0.09
28 17 0.39
29 13 0.30
30 1 0.02
31 9 0.20
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (29 bp):
ACCCTTTTAAAAGCCCATAAGTTGGTGCA
Found at i:4042023 original size:39 final size:39
Alignment explanation
Indices: 4041964--4042206 Score: 132
Period size: 39 Copynumber: 5.8 Consensus size: 39
4041954 CCTTTATCTT
*
4041964 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAACACATTGGCA
* * * *
4042003 TAAGCCCAATATCGCTGGCC-TGAAATCAGCATATTAGCACCTTGTCTT
1 TAAGACCAATATCGCTGGCCTTG-AAT---C--A--A-CACATTGGC-A
* *
4042051 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAACACATTGGCA
* * * *
4042090 TAAG-CCGAATATCGTTGGCCTTCAATCAGCATATTGGCA
1 TAAGACC-AATATCGCTGGCCTTGAATCAACACATTGGCA
* * * *
4042129 CCTTGTCTTTAAGACCAATGTCGCTGGCCTGGAATCAGCACATTGACA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAACACATTGGCA
* *
4042177 CAAG-CCAGTATCGCTGGCCTTGAATCAACA
1 TAAGACCAATATCGCTGGCCTTGAATCAACA
4042207 TACTGGCACC
Statistics
Matches: 156, Mismatches: 26, Indels: 45
0.69 0.11 0.20
Matches are distributed among these distances:
38 26 0.17
39 56 0.36
40 7 0.04
42 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 1 0.01
47 7 0.04
48 51 0.33
49 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (39 bp):
TAAGACCAATATCGCTGGCCTTGAATCAACACATTGGCA
Found at i:4042075 original size:87 final size:88
Alignment explanation
Indices: 4041915--4042262 Score: 488
Period size: 87 Copynumber: 4.0 Consensus size: 88
4041905 CGTCTTCTTC
* *
4041915 TAAGTCCAATATCGCTGGCCTTGAATTAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCT
*
4041980 GGCCTTGAATCAACACATTGGCA
66 GGCCTTGAATCAGCACATTGGCA
* * *
4042003 TAAGCCCAATATCGCTGGCC-TGAAATCAGCATATTAGCACC-TTGTCTTTAAGACCAATGTCGC
1 TAAGCCCAATATCGCTGGCCTTG-AATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGC
4042066 TGGCCTTGAATCAGCACATTGGCA
65 TGGCCTTGAATCAGCACATTGGCA
* * * * *
4042090 TAAGCCGAATATCGTTGGCCTTCAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCT
* *
4042154 GGCCTGGAATCAGCACATTGACA
66 GGCCTTGAATCAGCACATTGGCA
* * * *
4042177 CAAG-CCAGTATCGCTGGCCTTGAATCAACATACTGGCACCTTTATCTTTAAGACCAATATCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCT
* *
4042241 GGCCTTGAATCAGAATATTGGC
66 GGCCTTGAATCAGCACATTGGC
4042263 GCCATCGTCA
Statistics
Matches: 232, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
86 30 0.13
87 167 0.72
88 35 0.15
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (88 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCA
Found at i:4042079 original size:48 final size:48
Alignment explanation
Indices: 4042003--4042259 Score: 187
Period size: 48 Copynumber: 5.7 Consensus size: 48
4041993 CACATTGGCA
*
4042003 TAAGCCCAATATCGCTGGCC-TGAAATCAGCATATTAGCACCTTGTCTT
1 TAAGACCAATATCGCTGGCCTTG-AATCAGCATATTAGCACCTTGTCTT
* * *
4042051 TAAGACCAATGTCGCTGGCCTTGAATCAGC-----A-CA--TTGGC-A
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTGTCTT
* * *
4042090 TAAG-CCGAATATCGTTGGCCTTCAATCAGCATATTGGCACCTTGTCTT
1 TAAGACC-AATATCGCTGGCCTTGAATCAGCATATTAGCACCTTGTCTT
* * * *
4042138 TAAGACCAATGTCGCTGGCCTGGAATCAGCACATT-G-A-C---AC--
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTGTCTT
* * * * *
4042178 -AAG-CCAGTATCGCTGGCCTTGAATCAACATACTGGCACCTTTATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTAGCACC-TTGTCTT
*
4042225 TAAGACCAATATCGCTGGCCTTGAATCAGAATATT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATT
4042260 GGCGCCATCG
Statistics
Matches: 159, Mismatches: 27, Indels: 45
0.69 0.12 0.19
Matches are distributed among these distances:
38 26 0.16
39 28 0.18
40 5 0.03
41 1 0.01
42 3 0.02
43 1 0.01
45 4 0.03
46 1 0.01
47 5 0.03
48 55 0.35
49 30 0.19
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (48 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTGTCTT
Found at i:4042502 original size:33 final size:32
Alignment explanation
Indices: 4042469--4042804 Score: 239
Period size: 27 Copynumber: 10.9 Consensus size: 32
4042459 ACATTTCTTG
*
4042469 TCCCTTTTAAGTCCACAACTCCGTGGAACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
*
4042501 GTCCCTTTTAAGTCCACAACTCCGTAGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4042534 TTCTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4042562 -CCCTTTTAAGGCCACAACTCCATGGTACACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGG--CACCTT
* *
4042595 GTTCCTTTTAAGTCCACAACTCCATGGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4042628 TTCTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
4042656 -CCCTTTTAAG-CTCACAACTCCGTGGCACTCTTT
1 TCCCTTTTAAGTC-CACAACTCCGTGGCAC-C-TT
* *
4042689 TCCC-TTTAAGTCCATAACTCAGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4042716 -CCCTTTTAAATCCATAACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4042743 -CCCTTTTAAGTCTACAACTTCGTGGCATCTTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCA-CCTT
* * * *
4042775 TTCCTTTTAAGCCCACAAGTCAGTGGCACC
1 TCCCTTTTAAGTCCACAACTCCGTGGCACC
4042805 CTTTTCAAAG
Statistics
Matches: 245, Mismatches: 34, Indels: 49
0.75 0.10 0.15
Matches are distributed among these distances:
26 4 0.02
27 86 0.35
29 2 0.01
32 50 0.20
33 76 0.31
34 4 0.02
35 23 0.09
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (32 bp):
TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
Found at i:4042623 original size:62 final size:59
Alignment explanation
Indices: 4042503--4042629 Score: 168
Period size: 62 Copynumber: 2.1 Consensus size: 59
4042493 GGAACCTTGT
* * * *
4042503 CCCTTTTAAGTCCACAACTCCGTAGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCA
1 CCCTTTTAAGGCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
4042562 CCCTTTTAAGGCCACAACTCCATGGTA-CACCTTGTTCCTTTTAAGTCCACAACTCCATGGCA
1 CCCTTTTAAGGCCACAACTCC---GTAGCACCTT-TTCCTTTTAAGTCCACAACTCCATGGCA
4042624 -CCTTTT
1 CCCTTTT
4042630 CTTTTTAAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
59 20 0.33
61 12 0.20
62 28 0.47
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (59 bp):
CCCTTTTAAGGCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCA
Found at i:4042629 original size:94 final size:92
Alignment explanation
Indices: 4042470--4042810 Score: 410
Period size: 94 Copynumber: 3.7 Consensus size: 92
4042460 CATTTCTTGT
* * * * *
4042470 CCCTTTTAAGTCCACAACTCCGTGGAACCTTGTCCCTTTTAAGTCCACAACTCCGTAGCACCTTT
1 CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCTTT
4042535 TCTTTTTAAGTCCACGACTCCGTGGCA
66 TCTTTTTAAGTCCACGACTCCGTGGCA
*
4042562 CCCTTTTAAGGCCACAACTCCATGGTACACCTTGTTCCTTTTAAGTCCACAACTCCA-TGGCACC
1 CCCTTTTAAGGCCACAACTCCGTGG--CACCTTGTTCCTTTTAAGTCCACAACT-CAGTGGCACC
4042626 TTTTCTTTTTAAGTCCACGACTCCGTGGCA
63 TTTTCTTTTTAAGTCCACGACTCCGTGGCA
* *
4042656 CCCTTTTAA-GCTCACAACTCCGTGGCACTCTT-TTCCCTTTAAGTCCATAACTCAGTGGCACC-
1 CCCTTTTAAGGC-CACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCT
* **
4042718 ---C-TTTTAAATCCATAACTCCGTGGCA
64 TTTCTTTTTAAGTCCACGACTCCGTGGCA
* * * * * * *
4042743 CCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCCCACAAGTCAGTGGCACCCTT
1 CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCA-CCTT
4042808 TTC
65 TTC
4042811 AAAGCCTACA
Statistics
Matches: 216, Mismatches: 20, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
86 3 0.01
87 67 0.31
88 4 0.02
91 2 0.01
92 52 0.24
93 5 0.02
94 82 0.38
95 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (92 bp):
CCCTTTTAAGGCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCAGTGGCACCTTT
TCTTTTTAAGTCCACGACTCCGTGGCA
Found at i:4042717 original size:60 final size:59
Alignment explanation
Indices: 4042598--4042749 Score: 198
Period size: 60 Copynumber: 2.5 Consensus size: 59
4042588 ACACCTTGTT
* ** * *
4042598 CCTTTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
*
4042657 CCTTTTAAG-CTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCAC
1 CCTTTTAAGTC-CACAACTCCGTGGCAC-CTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
* *
4042717 CCTTTTAAATCCATAACTCCGTGGCACCCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT
4042750 AAGTCTACAA
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 54 0.67
61 2 0.02
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (59 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTTTAAGTCCACAACTCAGTGGCAC
Found at i:4042851 original size:28 final size:27
Alignment explanation
Indices: 4042787--4042861 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 27
4042777 CCTTTTAAGC
* *
4042787 CCACAAGTCAGTGGCACCCTTTTCAAAG
1 CCACAAGTTAGTGGCAACC-TTTCAAAG
4042815 CCTACAAGTTAGTGGCAACC-TTCAAAAG
1 CC-ACAAGTTAGTGGCAACCTTTC-AAAG
*
4042843 CACACAAGTTGGT-GCAACC
1 C-CACAAGTTAGTGGCAACC
4042862 CTTTTAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 9 0.22
28 16 0.39
29 16 0.39
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (27 bp):
CCACAAGTTAGTGGCAACCTTTCAAAG
Found at i:4042864 original size:28 final size:29
Alignment explanation
Indices: 4042818--4042887 Score: 72
Period size: 31 Copynumber: 2.4 Consensus size: 29
4042808 TTCAAAGCCT
*
4042818 ACAAGTTAGTGGCAACC-TTCAAAAG-CAC
1 ACAAGTTGGT-GCAACCTTTCAAAAGCCAC
* *
4042846 ACAAGTTGGTGCAACCCTTTTAAAAGCCCAT
1 ACAAGTTGGTGCAA-CCTTTCAAAAG-CCAC
4042877 ACAAGTTGGTG
1 ACAAGTTGGTG
4042888 GCGTCTTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.11
28 11 0.31
29 7 0.20
31 13 0.37
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (29 bp):
ACAAGTTGGTGCAACCTTTCAAAAGCCAC
Found at i:4043007 original size:39 final size:39
Alignment explanation
Indices: 4042948--4043285 Score: 230
Period size: 39 Copynumber: 8.0 Consensus size: 39
4042938 CTTTTATCTT
* *
4042948 TAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4042987 TAAGCCCAATATCGCTGGCC-TGAAATCAGCATATTAGCACCTTGTCTT
1 TAAGACCAATATCGCTGGCCTTG-AATCAGC-----A-CA--TTGGC-A
*
4043035 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4043074 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
*
4043113 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4043161 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTGTCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGC------ACA--TTGGC-A
* * *
4043209 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGACA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
4043248 CAAG-CTAGTATCGCTGGCCTTGAATCAACATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
4043286 CCTTTATCTT
Statistics
Matches: 238, Mismatches: 32, Indels: 59
0.72 0.10 0.18
Matches are distributed among these distances:
38 29 0.12
39 91 0.38
40 8 0.03
42 5 0.02
43 1 0.00
44 1 0.00
45 5 0.02
47 8 0.03
48 88 0.37
49 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4043052 original size:87 final size:87
Alignment explanation
Indices: 4042899--4043333 Score: 676
Period size: 87 Copynumber: 5.0 Consensus size: 87
4042889 CGTCTTCTTC
* * * * *
4042899 TAAGTCCAATATCGCTGGCCTTGAATTAGCATACTGGCACTTTTATCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTGTCTTTAAGACCAATGTCGCT
*
4042964 GGCCTTGAATCAACACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
*
4042987 TAAGCCCAATATCGCTGGCC-TGAAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTG-AATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCT
4043051 GGCCTTGAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
4043074 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
4043139 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
*
4043161 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* *
4043226 GCCTTGAATCAGTACATTGACA
66 GCCTTGAATCAGCACATTGGCA
* * * * * *
4043248 CAAG-CTAGTATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATATCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCT
*
4043312 GGCCTTGAATCAGCATATTGGC
65 GGCCTTGAATCAGCACATTGGC
4043334 GCCTTCGTCA
Statistics
Matches: 323, Mismatches: 21, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
86 32 0.10
87 256 0.79
88 35 0.11
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:4043122 original size:984 final size:981
Alignment explanation
Indices: 4041153--4044204 Score: 4295
Period size: 984 Copynumber: 3.0 Consensus size: 981
4041143 CACATTGGCA
* *
4041153 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTGAAAT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTG-AAT
* * * *
4041218 CAACCTGTTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCT
65 CAACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGCGCCA
*
4041283 TCGTCATCTTTAAAGACCAATGTCGTTGGCCTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCT
130 TCGTCATCTTTAAA-ACCAATGTCGTCGGCCTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCT
* * *
4041348 AATGGTTTTTTAGATTATAATGATTTTTTGTTAAGCTTGAATCCATTCGCCATCGTCCTTAGTCG
194 AATGGTTTTTTAGATTATAATGATTTTTTGTTAAGCTTGAATCAATTCCCCATCGTCCCTAGTCG
*
4041413 AGATAGAGTGTCTGGAAGGCAAAAAGGTTGAAAAAATCACATTTTTGTCCAAATGTATCGATACA
259 AGATA-AGTGTCTGGAAGGCAAAAAGG-TGAAAAAATCAAATTTTTGTCCAAATGTATCGATACA
4041478 TTTCTTGTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTG
322 TTTCTTGTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTG
4041543 GCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGGCCACAACTCCATGGTACAC
387 GCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGGCCACAACTCCATGGTACAC
4041608 CTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCAC
452 CTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCAC
*
4041673 CCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCCTCTAAGTCCATAACTCAGTGGCACCCTTT
517 CCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTT
4041738 TAAATCCATAACTCCGTGGCACCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGC
582 TAAATCCATAACTCCGTGGCACCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGC
*
4041803 CCACAAGTCAGTGGCACCCTTTTCAAAGCCTACAAGTTAGTGGCAACCTTCAAAAGCACATAAGT
647 CCACAAGTCAGTGGCACCCTTTTCAAAGCCTACAAGTTAGTGGCAACCTTCAAAAGCACACAAGT
4041868 TGGTGCAACCCTTTTAAAAGCCCATACAAGTTGGTGGCGTCTTCTTCTAAGTCCAATATCGCTGG
712 TGGTGCAACCCTTTTAAAAGCCCATACAAGTTGGTGGCGTCTTCTTCTAAGTCCAATATCGCTGG
4041933 CCTTGAATTAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACAT
777 CCTTGAATTAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACAT
4041998 TGGCATAAGCCCAATATCGCTGGCCTGAAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGT
842 TGGCATAAGCCCAATATCGCTGGCCTGAAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGT
* * *
4042063 CGCTGGCCTTGAATCAGCACATTGGCATAAGCCGAATATCGTTGGCCTTCAATCAGCATATTGGC
907 CGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC
4042128 ACCTTGTCTT
972 ACCTTGTCTT
*
4042138 TAAGACCAATGTCGCTGGCCTGGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTGAATC
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTGAATC
*
4042203 AACATACTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGCGCCAT
66 AACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGCGCCAT
*
4042268 CGTCATCTTTAAAACCCAATGCCGTCGGCCTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCTA
131 CGTCATCTTTAAAA-CCAATGTCGTCGGCCTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCTA
*
4042333 ATGGTTTTTTAGATTATAATGACTTTTTGTTAAGCTTGAATCAATTCCCCATCGTCCCTAGTCGA
195 ATGGTTTTTTAGATTATAATGATTTTTTGTTAAGCTTGAATCAATTCCCCATCGTCCCTAGTCGA
4042398 GATAAAGTGTCTGGAAGGCAAAAAGGATGAAAAAATCAAATTTTTGTCCAAATGTATCGATACAT
260 GAT-AAGTGTCTGGAAGGCAAAAAGG-TGAAAAAATCAAATTTTTGTCCAAATGTATCGATACAT
* *
4042463 TTCTTGTCCCTTTTAAGTCCACAACTCCGTGGAACCTTGTCCCTTTTAAGTCCACAACTCCGTAG
323 TTCTTGTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGG
4042528 CACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGGCCACAACTCCATGGTACACC
388 CACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGGCCACAACTCCATGGTACACC
*
4042593 TTGTTCCTTTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACC
453 TTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACC
4042658 CTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTT
518 CTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTT
4042723 AAATCCATAACTCCGTGGCACCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCC
583 AAATCCATAACTCCGTGGCACCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCC
4042788 CACAAGTCAGTGGCACCCTTTTCAAAGCCTACAAGTTAGTGGCAACCTTCAAAAGCACACAAGTT
648 CACAAGTCAGTGGCACCCTTTTCAAAGCCTACAAGTTAGTGGCAACCTTCAAAAGCACACAAGTT
4042853 GGTGCAACCCTTTTAAAAGCCCATACAAGTTGGTGGCGTCTTCTTCTAAGTCCAATATCGCTGGC
713 GGTGCAACCCTTTTAAAAGCCCATACAAGTTGGTGGCGTCTTCTTCTAAGTCCAATATCGCTGGC
*
4042918 CTTGAATTAGCATACTGGCACTTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATT
778 CTTGAATTAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATT
4042983 GGCATAAGCCCAATATCGCTGGCCTGAAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTC
843 GGCATAAGCCCAATATCGCTGGCCTGAAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTC
4043048 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
908 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
4043113 CCTTGTCTT
973 CCTTGTCTT
* * *
4043122 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAAT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGACACAAG-CCAGTATCGCTGGCCTTGAAT
* * * *
4043187 CAGCATATTGACACC-TTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGACACAA
65 CAACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTG-A--A-T-CA--G-----A
* * * *
4043251 GCTAGTATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATATCG-CTGGC
118 ---A-TAT---TGG-C--G---C--C--A-T-----CGTCATCTTTAAAACCAATGTCGTC-GGC
** * * * * *
4043315 CTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAGCCCAATGTCGTTGGCCTTGTCTCAGCA
159 CTTGTCTCAGCACATT-G-GCATTC-T--TC-TTCAAGTCTAATG--GTT----TT-T-T-----
* *** * **
4043380 CATTGGCATTCTTCTTCAAGTCTAATGGTTTTTTAGATTATAATGACTTTTTGTTAAGCTTGAAT
205 -A---G-A------TT--A---TAATGATTTTTT-G--T-TAA-G-C-TTGAATCAA--TT--CC
* *** ** * *** **
4043445 CCAT--TCCCCA-TCGTCCCT-AGTCGAGATAG-AGTGTCTGGAAGGCCAAAAGGATGAAAAAAT
243 CCATCGTCCCTAGTCG-AGATAAGT-G-TCTGGAAG-G-CAAAAAGG----TG-----AAAAAAT
* *
4043505 CACATTTTTGTCCAAATGTATCGATACATTTCTTGTCCCTTTTAAGTCCACAACTCAGTGGCACC
294 CAAATTTTTGTCCAAATGTATCGATACATTTCTTGTCCCTTTTAAGTCCACAACTCCGTGGCACC
**
4043570 TTGTCCCTTTTAAGTCCACAACTCCGTGGCGTCTTTTCTTTTTTAAGTCCACGACTCCGTGGCAC
359 TTGTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC-TTTTTAAGTCCACGACTCCGTGGCAC
* * * *
4043635 CCTTTTAAGCCCACAACTCCATGGTACTCCTTGTTCCTTTTATGTCTACAACTCCGTGGCACCTT
423 CCTTTTAAGGCCACAACTCCATGGTACACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTT
*
4043700 TTCTTTTTAAGTCCATGACTCCGTGGCACCCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCC
488 TTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCC
* *
4043765 TTTAAGTCCATAACTCAGTGGCACCCTTTTAAATCCATAACTCTGTGGCACCCTTTTAAGTCGAC
553 TTTAAGTCCATAACTCAGTGGCACCCTTTTAAATCCATAACTCCGTGGCACCCTTTTAAGTCTAC
* * * *
4043830 AAC-TCTGTGACATCTTTTTCCTTTTAAGCCCAGAAGTCAGTGGCACCCCTTTCAAAGCCCACAA
618 AACTTC-GTGGCATCTTTTTCCTTTTAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCTACAA
* * *
4043894 GTCAGTGGCAACCTTCAAAAGCACACAAGTTGGTGCAACCCTTTCAAAAGCCCACACAAGTTGGT
682 GTTAGTGGCAACCTTCAAAAGCACACAAGTTGGTGCAACCCTTTTAAAAGCCCATACAAGTTGGT
* *
4043959 GGCGTCTTCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
747 GGCGTCTTCTTCTAAGTCCAATATCGCTGGCCTTGAATTAGCATACTGGCACCTTTATCTTTAAG
* * *
4044024 ACCAATGTCACTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTG-AATCAA
812 ACCAATGTCGCTGGCCTTGAATCAACACATTGGCATAAGCCCAATATCGCTGGCC-TGAAATCAG
* * *
4044088 CATATTGGCACCTTGTCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATAAGCCC
876 CATATTAGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCC
4044153 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
941 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
4044194 TAAGACCAATG
1 TAAGACCAATG
4044205 AGTGGTATTG
Statistics
Matches: 1870, Mismatches: 96, Indels: 115
0.90 0.05 0.06
Matches are distributed among these distances:
983 1 0.00
984 965 0.52
985 92 0.05
987 1 0.00
988 1 0.00
989 2 0.00
991 1 0.00
996 1 0.00
999 1 0.00
1000 3 0.00
1003 3 0.00
1004 1 0.00
1006 1 0.00
1009 1 0.00
1011 1 0.00
1013 1 0.00
1014 1 0.00
1017 1 0.00
1018 23 0.01
1019 12 0.01
1020 5 0.00
1021 1 0.00
1023 2 0.00
1024 10 0.01
1026 3 0.00
1030 2 0.00
1031 1 0.00
1032 1 0.00
1038 1 0.00
1041 1 0.00
1042 1 0.00
1048 2 0.00
1050 1 0.00
1053 10 0.01
1054 1 0.00
1056 1 0.00
1057 3 0.00
1058 1 0.00
1059 1 0.00
1060 8 0.00
1061 6 0.00
1062 11 0.01
1063 5 0.00
1064 4 0.00
1066 1 0.00
1071 106 0.06
1072 566 0.30
1073 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (981 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGACACAAGCCAGTATCGCTGGCCTTGAATC
AACATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTGAATCAGAATATTGGCGCCAT
CGTCATCTTTAAAACCAATGTCGTCGGCCTTGTCTCAGCACATTGGCATTCTTCTTCAAGTCTAA
TGGTTTTTTAGATTATAATGATTTTTTGTTAAGCTTGAATCAATTCCCCATCGTCCCTAGTCGAG
ATAAGTGTCTGGAAGGCAAAAAGGTGAAAAAATCAAATTTTTGTCCAAATGTATCGATACATTTC
TTGTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCAC
CTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGGCCACAACTCCATGGTACACCTTG
TTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGCACCCTT
TTAAGCTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTTAAA
TCCATAACTCCGTGGCACCCTTTTAAGTCTACAACTTCGTGGCATCTTTTTCCTTTTAAGCCCAC
AAGTCAGTGGCACCCTTTTCAAAGCCTACAAGTTAGTGGCAACCTTCAAAAGCACACAAGTTGGT
GCAACCCTTTTAAAAGCCCATACAAGTTGGTGGCGTCTTCTTCTAAGTCCAATATCGCTGGCCTT
GAATTAGCATACTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGC
ATAAGCCCAATATCGCTGGCCTGAAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT
TGTCTT
Found at i:4043370 original size:53 final size:49
Alignment explanation
Indices: 4043256--4043387 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 49
4043246 CACAAGCTAG
*
4043256 TATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAA
1 TATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAA
* *
4043305 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAGCCCAA
1 TATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-ATCTTT-AAGACCAA
* * ** *
4043358 TGTCGTTGGCCTTGTCTCAGCACATTGGCA
1 TATCGCTGGCCTTGAATCAGCATATTGGCA
4043388 TTCTTCTTCA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 32 0.46
51 1 0.01
52 6 0.09
53 31 0.44
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (49 bp):
TATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAA
Found at i:4043573 original size:33 final size:32
Alignment explanation
Indices: 4043540--4043789 Score: 182
Period size: 33 Copynumber: 7.9 Consensus size: 32
4043530 ACATTTCTTG
*
4043540 TCCCTTTTAAGTCCACAACTCAGTGGCACCTT
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* *
4043572 GTCCCTTTTAAGTCCACAACTCCGTGGCGTCTTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGC-ACCTT
** *
4043606 TCTTTTTTAAGTCCACGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4043634 -CCCTTTTAAGCCCACAACTCCATGGTACTCCTT
1 TCCCTTTTAAGTCCACAACTCCGTGG--CACCTT
* * *
4043667 GTTCCTTTTATGTCTACAACTCCGTGGCACCTT
1 -TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
* * **
4043700 TTCTTTTTAAGTCCATGACTCCGTGGCA----
1 TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
4043728 -CCCTTTTAAG-CTCACAACTCCGTGGCACTCTTT
1 TCCCTTTTAAGTC-CACAACTCCGTGGCAC-C-TT
* *
4043761 TCCC-TTTAAGTCCATAACTCAGTGGCACC
1 TCCCTTTTAAGTCCACAACTCCGTGGCACC
4043790 CTTTTAAATC
Statistics
Matches: 169, Mismatches: 30, Indels: 37
0.72 0.13 0.16
Matches are distributed among these distances:
26 1 0.01
27 41 0.24
29 1 0.01
32 24 0.14
33 75 0.44
34 7 0.04
35 20 0.12
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.34
Consensus pattern (32 bp):
TCCCTTTTAAGTCCACAACTCCGTGGCACCTT
Found at i:4043814 original size:87 final size:88
Alignment explanation
Indices: 4043541--4043877 Score: 288
Period size: 87 Copynumber: 3.7 Consensus size: 88
4043531 CATTTCTTGT
* * * *
4043541 CCCTTTTAAG-TCCACAACTCAGTGGCAC-CTTGTCCCTTTTAAGTCCACAACTCCGTGGCGTCT
1 CCCTTTTAAGCT-CACAACTCCGTGGCACTCTT-TTCCTTTTAAGTCCACAACTCAGTGGC-AC-
* * **
4043604 TTTCTTTTTTAAGTCCACGACTCCGTGGCA
62 ---CCTTTTTAAATCCATAACTCCGTGGCA
* * * * * *
4043634 CCCTTTTAAGCCCACAACTCCATGGTACTCCTTGTTCCTTTTATGTCTACAACTCCGTGGCACCT
1 CCCTTTTAAGCTCACAACTCCGTGGCACT-CTT-TTCCTTTTAAGTCCACAACTCAGTGGCACC-
* *
4043699 TTTCTTTTTAAGTCCATGACTCCGTGGCA
63 ---CTTTTTAAATCCATAACTCCGTGGCA
* *
4043728 CCCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCC-T
1 CCCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCTTTTAAGTCCACAACTCAGTGGCACCCTT
*
4043792 TTTAAATCCATAACTCTGTGGCA
66 TTTAAATCCATAACTCCGTGGCA
* * * * *
4043815 CCCTTTTAAG-TCGACAACTCTGTGACA-TCTTTTTCCTTTTAAGCCCAGAAGTCAGTGGCACCC
1 CCCTTTTAAGCTC-ACAACTCCGTGGCACTC-TTTTCCTTTTAAGTCCACAACTCAGTGGCACCC
4043878 CTTTCAAAGC
Statistics
Matches: 208, Mismatches: 27, Indels: 24
0.80 0.10 0.09
Matches are distributed among these distances:
86 4 0.02
87 72 0.35
88 1 0.00
90 1 0.00
92 25 0.12
93 26 0.12
94 51 0.25
95 28 0.13
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.34
Consensus pattern (88 bp):
CCCTTTTAAGCTCACAACTCCGTGGCACTCTTTTCCTTTTAAGTCCACAACTCAGTGGCACCCTT
TTTAAATCCATAACTCCGTGGCA
Found at i:4043821 original size:60 final size:60
Alignment explanation
Indices: 4043682--4043821 Score: 185
Period size: 60 Copynumber: 2.4 Consensus size: 60
4043672 TTTTATGTCT
** * *
4043682 ACAACTCCGTGGCA-CCTTTTCTTTTTAAGTCCATGACTCCGTGGCACCCTTTTAAGCTC
1 ACAACTCCGTGGCACCCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTTAAGCTC
* *
4043741 ACAACTCCGTGGCACTCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTTAA-ATCC
1 ACAACTCCGTGGCACCCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTTAAGCT-C
* *
4043801 ATAACTCTGTGGCACCCTTTT
1 ACAACTCCGTGGCACCCTTTT
4043822 AAGTCGACAA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
59 15 0.21
60 55 0.79
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.34
Consensus pattern (60 bp):
ACAACTCCGTGGCACCCTTTTCCCTTTAAGTCCATAACTCAGTGGCACCCTTTTAAGCTC
Found at i:4043833 original size:27 final size:27
Alignment explanation
Indices: 4043704--4043838 Score: 119
Period size: 27 Copynumber: 4.8 Consensus size: 27
4043694 CACCTTTTCT
* *
4043704 TTTTAAGTCCATGACTCCGTGGCACCC
1 TTTTAAGTCCATAACTCTGTGGCACCC
* *
4043731 TTTTAAG-CTCACAACTCCGTGGCACTCTTTTCC
1 TTTTAAGTC-CATAACTCTGTGGCA--C----CC
* *
4043764 CTTTAAGTCCATAACTCAGTGGCACCC
1 TTTTAAGTCCATAACTCTGTGGCACCC
*
4043791 TTTTAAATCCATAACTCTGTGGCACCC
1 TTTTAAGTCCATAACTCTGTGGCACCC
* *
4043818 TTTTAAGTCGACAACTCTGTG
1 TTTTAAGTCCATAACTCTGTG
4043839 ACATCTTTTT
Statistics
Matches: 89, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 64 0.72
29 1 0.01
31 1 0.01
33 21 0.24
34 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (27 bp):
TTTTAAGTCCATAACTCTGTGGCACCC
Found at i:4043908 original size:28 final size:29
Alignment explanation
Indices: 4043855--4043949 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
4043845 TTTTCCTTTT
* *
4043855 AAGCCCAGAAGTCAGTGGCACCCCTTTC-A
1 AAGCCCACAAGTCAGTGGCA-ACCTTTCAA
4043884 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTTCAA
* **
4043912 AAGCACACAAGTTGGT-GCAACCCTTTCAA
1 AAGCCCACAAGTCAGTGGCAA-CCTTTCAA
4043941 AAGCCCACA
1 AAGCCCACA
4043950 CAAGTTGGTG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 7 0.12
28 18 0.32
29 32 0.56
ACGTcount: A:0.34, C:0.33, G:0.18, T:0.16
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCAACCTTTCAA
Found at i:4043953 original size:31 final size:30
Alignment explanation
Indices: 4043876--4043959 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 30
4043866 TCAGTGGCAC
**
4043876 CCCTTTC-AAAGCC-CACAAGTCAGTGGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGT-GCAA
4043905 -CC-TTCAAAAG-CACACAAGTTGGTGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGTGCAA
4043932 CCCTTTCAAAAGCCCACACAAGTTGGTG
1 CCCTTTCAAAAG-CCACACAAGTTGGTG
4043960 GCGTCTTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
27 8 0.17
28 17 0.36
29 8 0.17
31 14 0.30
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (30 bp):
CCCTTTCAAAAGCCACACAAGTTGGTGCAA
Found at i:4044079 original size:39 final size:39
Alignment explanation
Indices: 4044020--4044184 Score: 168
Period size: 39 Copynumber: 4.0 Consensus size: 39
4044010 CCTTTATCTT
* * *
4044020 TAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCA
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4044059 TAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCA
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4044098 CCTTGTCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
*
4044146 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
4044185 CCTTGTCTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
39 69 0.67
48 34 0.33
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4044142 original size:87 final size:87
Alignment explanation
Indices: 4043971--4044204 Score: 405
Period size: 87 Copynumber: 2.7 Consensus size: 87
4043961 CGTCTTCTTC
* *
4043971 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCACT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCACT
4044036 GGCCTTGAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
* * **
4044059 TAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAAGTCCAATGTCGTTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTG
4044124 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
4044146 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATG
4044205 AGTGGTATTG
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 99 0.72
88 39 0.28
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTG
GCCTTGAATCAGCACATTGGCA
Found at i:4044143 original size:48 final size:48
Alignment explanation
Indices: 4044059--4044203 Score: 173
Period size: 48 Copynumber: 3.2 Consensus size: 48
4044049 CACATTGGCA
*
4044059 TAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTGTCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
* * * *
4044107 TAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA---------
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
4044146 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
*
4044194 TAAGACCAAT
1 TAAGCCCAAT
4044204 GAGTGGTATT
Statistics
Matches: 78, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
39 35 0.45
48 43 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTT
Found at i:4045012 original size:33 final size:33
Alignment explanation
Indices: 4044975--4045040 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
4044965 ATCGGGTTAT
*
4044975 TCTTCTCGGGTTTCACCTCGCGGTGCTCGGATA
1 TCTTCTCAGGTTTCACCTCGCGGTGCTCGGATA
4045008 TCTTCTCAGGTTTCACCTCGCGGTGCTCGGATA
1 TCTTCTCAGGTTTCACCTCGCGGTGCTCGGATA
4045041 ATCAGGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.11, C:0.30, G:0.26, T:0.33
Consensus pattern (33 bp):
TCTTCTCAGGTTTCACCTCGCGGTGCTCGGATA
Found at i:4045699 original size:27 final size:28
Alignment explanation
Indices: 4045662--4045714 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
4045652 CAAAATTTTA
*
4045662 TTCGACGGGGACACTTCAACCCCATTCC
1 TTCGACGGGGACACTCCAACCCCATTCC
4045690 TTCGA-GGGGACACTCCAACCCCATT
1 TTCGACGGGGACACTCCAACCCCATT
4045715 TTCAACCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.23, C:0.38, G:0.19, T:0.21
Consensus pattern (28 bp):
TTCGACGGGGACACTCCAACCCCATTCC
Found at i:4048450 original size:259 final size:259
Alignment explanation
Indices: 4047991--4048495 Score: 956
Period size: 259 Copynumber: 1.9 Consensus size: 259
4047981 GATGGCAATG
*
4047991 AGAAAGAAAACTTCACTAAGAAATATGGGGATATAGTTCTCTTGCTTCGTGTACAGTTGGATGAG
1 AGAAAGAAAACTTCACTAAGAAATATGGGGATATAGCTCTCTTGCTTCGTGTACAGTTGGATGAG
*
4048056 GGCCTGTTGCTAGCAGCGGCACAGTTCTGGAATCCAGCCTATCGATGCTTTACCTTTAATCAACA
66 GGCCTGTTGCTAGCAGCGGCACAGTTCTGGAATCCAGCCTATCGATGCTTCACCTTTAATCAACA
4048121 AGACTTAGTCCCTACTATTGATGAGTATACTGCTCTACTCAACATAAAAAGTGCCAAATCTGACC
131 AGACTTAGTCCCTACTATTGATGAGTATACTGCTCTACTCAACATAAAAAGTGCCAAATCTGACC
*
4048186 GGATTTACTGCAAAGCTCTATAACCCCCTCCATTCAGGAAAAGATTAATGCTTCACTACAACAT
196 GGATTTACTGCAAAGCTCTACAACCCCCTCCATTCAGGAAAAGATTAATGCTTCACTACAACAT
4048250 AGAAAGAAAACTTCACTAAGAAATATGGGGATATAGCTCTCTTGCTTCGTGTACAGTTGGATGAG
1 AGAAAGAAAACTTCACTAAGAAATATGGGGATATAGCTCTCTTGCTTCGTGTACAGTTGGATGAG
*
4048315 GGCCTGTTGCTAGCAGCGGCACAGTTCTGGAATCCGGCCTATCGATGCTTCACCTTTAATCAACA
66 GGCCTGTTGCTAGCAGCGGCACAGTTCTGGAATCCAGCCTATCGATGCTTCACCTTTAATCAACA
* *
4048380 AGACTTAGTCCCTACTATTGATGAGTATACTGCTCTACTCAACATAGAAAGTGCCAAATCTGATC
131 AGACTTAGTCCCTACTATTGATGAGTATACTGCTCTACTCAACATAAAAAGTGCCAAATCTGACC
4048445 GGATTTACTGCAAAGCTCTACAACCCCCTCCATTCAGGAAAAGATTAATGC
196 GGATTTACTGCAAAGCTCTACAACCCCCTCCATTCAGGAAAAGATTAATGC
4048496 AAATCCTTGG
Statistics
Matches: 240, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
259 240 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (259 bp):
AGAAAGAAAACTTCACTAAGAAATATGGGGATATAGCTCTCTTGCTTCGTGTACAGTTGGATGAG
GGCCTGTTGCTAGCAGCGGCACAGTTCTGGAATCCAGCCTATCGATGCTTCACCTTTAATCAACA
AGACTTAGTCCCTACTATTGATGAGTATACTGCTCTACTCAACATAAAAAGTGCCAAATCTGACC
GGATTTACTGCAAAGCTCTACAACCCCCTCCATTCAGGAAAAGATTAATGCTTCACTACAACAT
Found at i:4053974 original size:20 final size:20
Alignment explanation
Indices: 4053949--4054000 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 20
4053939 AGCCTATCTA
*
4053949 GTTGCCAATATCTAGAATGG
1 GTTGCCAATATCCAGAATGG
4053969 GTTGCCAAATATCCAGAATGG
1 GTTGCC-AATATCCAGAATGG
4053990 GTTGCCAATAT
1 GTTGCCAATAT
4054001 AGTTGTAGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (20 bp):
GTTGCCAATATCCAGAATGG
Found at i:4057009 original size:17 final size:17
Alignment explanation
Indices: 4056989--4057070 Score: 119
Period size: 17 Copynumber: 4.6 Consensus size: 17
4056979 TGTCCTCCGT
4056989 AAAAAAAAAAACAAAAA
1 AAAAAAAAAAACAAAAA
*
4057006 AAAAAGAAAAACAAAAA
1 AAAAAAAAAAACAAAAA
*
4057023 AAAAAGAAAAACAAAAAA
1 AAAAAAAAAAAC-AAAAA
4057041 AAACAAAAAAAACAAAAA
1 AAA-AAAAAAAACAAAAA
4057059 AACAAAAAAAAA
1 AA-AAAAAAAAA
4057071 ACAACAACAA
Statistics
Matches: 60, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
17 28 0.47
18 23 0.38
19 9 0.15
ACGTcount: A:0.90, C:0.07, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAACAAAAA
Found at i:4057048 original size:44 final size:44
Alignment explanation
Indices: 4056991--4057083 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
4056981 TCCTCCGTAA
*
4056991 AAAAAAAAACAAAAAAAA-AAGAAAAACAAAAAAAAAAGAAAAAC
1 AAAAAAAAACAAAAAAAACAA-AAAAACAAAAAAAAAACAAAAAC
*
4057035 AAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAAC
1 AAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAAAAAC
4057079 AAAAA
1 AAAAA
4057084 GGGTCCGGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 44 0.96
45 2 0.04
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (44 bp):
AAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAAAAAC
Found at i:4057079 original size:17 final size:15
Alignment explanation
Indices: 4056989--4057083 Score: 104
Period size: 16 Copynumber: 6.1 Consensus size: 15
4056979 TGTCCTCCGT
4056989 AAAAAAAAAAACAAAA
1 AAAAAAAAAAAC-AAA
4057005 AAAAAAGAAAAACAAA
1 AAAAAA-AAAAACAAA
*
4057021 AAAAAAAGAAAA-ACA
1 AAAAAAA-AAAACAAA
*
4057036 AAAAAAAACAA-AAA
1 AAAAAAAAAAACAAA
*
4057050 AAACAAAAAAACAAA
1 AAAAAAAAAAACAAA
4057065 AAAAAAACAACAACAAA
1 AAAAAAA-AA-AACAAA
4057082 AA
1 AA
4057084 GGGTCCGGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
14 14 0.21
15 19 0.28
16 21 0.31
17 14 0.21
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAACAAA
Found at i:4057083 original size:1 final size:1
Alignment explanation
Indices: 4056989--4057071 Score: 94
Period size: 1 Copynumber: 83.0 Consensus size: 1
4056979 TGTCCTCCGT
* * * * * * *
4056989 AAAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAAAAAAAACAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
4057054 AAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAA
4057072 CAACAACAAA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.90, C:0.07, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:4057162 original size:43 final size:43
Alignment explanation
Indices: 4057097--4057187 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 43
4057087 TCCGGATGAA
*
4057097 AACTCGCAAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAG
1 AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
4057140 AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
1 AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
4057183 AACTC
1 AACTC
4057188 ACAAAAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (43 bp):
AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
Found at i:4057225 original size:11 final size:11
Alignment explanation
Indices: 4057211--4057295 Score: 95
Period size: 11 Copynumber: 7.9 Consensus size: 11
4057201 TGTCCTCCAC
4057211 AAAAAAA-AAA
1 AAAAAAACAAA
*
4057221 CAAAAAA-AAA
1 AAAAAAACAAA
*
4057231 AGAAAAACAAA
1 AAAAAAACAAA
*
4057242 AAAAAAAGAAA
1 AAAAAAACAAA
*
4057253 AACAAAACAAA
1 AAAAAAACAAA
*
4057264 ACAAAAAA-AAC
1 A-AAAAAACAAA
4057275 AAAAAAACAAA
1 AAAAAAACAAA
4057286 AAAAAAACAA
1 AAAAAAACAA
4057296 CAACAAAAAG
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
10 20 0.32
11 37 0.60
12 5 0.08
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:4057231 original size:17 final size:17
Alignment explanation
Indices: 4057211--4057291 Score: 117
Period size: 17 Copynumber: 4.6 Consensus size: 17
4057201 TGTCCTCCAC
4057211 AAAAAAAAAACAAAAAA
1 AAAAAAAAAACAAAAAA
*
4057228 AAAAGAAAAACAAAAAA
1 AAAAAAAAAACAAAAAA
*
4057245 AAAAGAAAAACAAAACAA
1 AAAAAAAAAACAAAA-AA
4057263 AACAAAAAAAACAAAAAA
1 AA-AAAAAAAACAAAAAA
4057281 ACAAAAAAAAA
1 A-AAAAAAAAA
4057292 ACAACAACAA
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
17 31 0.53
18 15 0.25
19 13 0.22
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAACAAAAAA
Found at i:4057271 original size:44 final size:44
Alignment explanation
Indices: 4057212--4057304 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
4057202 GTCCTCCACA
*
4057212 AAAAAAAAACAAAAAAAA-AAGAAAAACAAAAAAAAAAGAAAAAC
1 AAAAAAAAACAAAAAAAACAA-AAAAACAAAAAAAAAACAAAAAC
* *
4057256 AAAACAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAAC
1 AAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAAAAAC
4057300 AAAAA
1 AAAAA
4057305 GGGTCCGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (44 bp):
AAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAAAAAC
Found at i:4057300 original size:17 final size:16
Alignment explanation
Indices: 4057209--4057304 Score: 93
Period size: 17 Copynumber: 5.8 Consensus size: 16
4057199 GGTGTCCTCC
*
4057209 ACAAAAAAAAAACAAAA
1 ACAAAACAAAAA-AAAA
* *
4057226 AAAAAAGAAAAACAAAA
1 ACAAAACAAAAA-AAAA
* * *
4057243 AAAAAAGAAAAACAAA
1 ACAAAACAAAAAAAAA
4057259 ACAAAACAAAAAAAACA
1 ACAAAACAAAAAAAA-A
*
4057276 AAAAAACAAAAAAAAA
1 ACAAAACAAAAAAAAA
4057292 ACAACAACAAAAA
1 ACAA-AACAAAAA
4057305 GGGTCCGGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
16 19 0.28
17 50 0.72
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.00
Consensus pattern (16 bp):
ACAAAACAAAAAAAAA
Found at i:4057304 original size:1 final size:1
Alignment explanation
Indices: 4057211--4057292 Score: 83
Period size: 1 Copynumber: 82.0 Consensus size: 1
4057201 TGTCCTCCAC
* * * * * * * *
4057211 AAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAAACAAAACAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
4057276 AAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAA
4057293 CAACAACAAA
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:4057357 original size:221 final size:221
Alignment explanation
Indices: 4056973--4057408 Score: 838
Period size: 221 Copynumber: 2.0 Consensus size: 221
4056963 AGAAAACCTG
4056973 AAAAGGTGTCCTCCGTAAAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAA
1 AAAAGGTGTCCTCCG-AAAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAA
4057038 AAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAACAAAAAGGGTCCGGATGAAAACTCG
65 AAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAACAAAAAGGGTCCGGATGAAAACTCG
4057103 CAAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAGAACTCGCAAGGGCGTCTAGATCATTAAG
130 CAAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAGAACTCGCAAGGGCGTCTAGATCATTAAG
4057168 CCAACTTGGGTTGAGAACTCACAAAAA
195 CCAACTTGGGTTGAGAACTCACAAAAA
4057195 AAAAGGTGTCCTCC-ACAAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAA
1 AAAAGGTGTCCTCCGA-AAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAA
*
4057259 ACAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAACAAAAAGGGTCCGGATGAAAACTCG
65 AAAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAACAAAAAGGGTCCGGATGAAAACTCG
4057324 CAAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAGAACTCGCAAGGGCGTCTAGATCATTAAG
130 CAAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAGAACTCGCAAGGGCGTCTAGATCATTAAG
4057389 CCAACTTGGGTTGAGAACTC
195 CCAACTTGGGTTGAGAACTC
4057409 GCAAGGGCGA
Statistics
Matches: 212, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
220 1 0.00
221 197 0.93
222 14 0.07
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.12
Consensus pattern (221 bp):
AAAAGGTGTCCTCCGAAAAAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAAGAAAAACAAAA
AAAAACAAAAAAAACAAAAAAACAAAAAAAAAACAACAACAAAAAGGGTCCGGATGAAAACTCGC
AAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAGAACTCGCAAGGGCGTCTAGATCATTAAGC
CAACTTGGGTTGAGAACTCACAAAAA
Found at i:4057383 original size:43 final size:43
Alignment explanation
Indices: 4057318--4057417 Score: 191
Period size: 43 Copynumber: 2.3 Consensus size: 43
4057308 TCCGGATGAA
*
4057318 AACTCGCAAGGGCGTCTGGATCATTAAGCCAACTTGGGTTGAG
1 AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
4057361 AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
1 AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
4057404 AACTCGCAAGGGCG
1 AACTCGCAAGGGCG
4057418 ACTTGAGAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (43 bp):
AACTCGCAAGGGCGTCTAGATCATTAAGCCAACTTGGGTTGAG
Found at i:4058864 original size:58 final size:54
Alignment explanation
Indices: 4058773--4058913 Score: 165
Period size: 55 Copynumber: 2.5 Consensus size: 54
4058763 GACATTCCTC
* * * *
4058773 ACCTTTTCAAAGCACACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAAGTCGGTGGCA
1 ACCTTTT--AAGCCCACAAGTCCGTGGCACCC-TTT--AAAGCCCACAACTCCGTGGCA
4058832 ACCTTTTGAAGCCCACAAGTCCGTGGCACCCTTTAAAGCCCACAACTCCGTGGCA
1 ACCTTTT-AAGCCCACAAGTCCGTGGCACCCTTTAAAGCCCACAACTCCGTGGCA
* * *
4058887 CCCTTTTAAGTCCACAACTCCGTGGCA
1 ACCTTTTAAGCCCACAAGTCCGTGGCA
4058914 TCTTTTCCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
54 18 0.24
55 25 0.34
57 3 0.04
58 21 0.28
59 7 0.09
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (54 bp):
ACCTTTTAAGCCCACAAGTCCGTGGCACCCTTTAAAGCCCACAACTCCGTGGCA
Found at i:4058929 original size:33 final size:32
Alignment explanation
Indices: 4058861--4059472 Score: 468
Period size: 33 Copynumber: 19.8 Consensus size: 32
4058851 TCCGTGGCAC
* *
4058861 CCTTTAAAGCCCACAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
4058888 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
4058920 CCTTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 CC-TTTTAAGTCCACAACTCCGTGGCATCTTTT
*
4058953 CCCTTTTAAGTCCACAACTCCATGGCATCTTTT
1 -CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
*
4058986 CCCTTTTAAGTCCACAACTCCGTGGCACCTTGTT
1 -CCTTTTAAGTCCACAACTCCGTGGCATCTT-TT
* * *
4059020 CCTTTGAAGTCCACAACTCTGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* *
4059052 CTTTTTAAGTCCACGACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* * * *
4059079 CCTTTTAAGCCCACAAATCCATGGTACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-TC-TTTT
* **
4059113 CCCTTTAAGTCCACAACTTAGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* *
4059140 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTC
1 CCTTTTAAGTCCACAACTCCGTGGCATCTT-TT
* *
4059173 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* **
4059205 CTTTTTAAGTCCATGACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* * *
4059232 CCTTTTAAGCCCACAACTCCGGGGTACTTCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGG--CATCTT-TT
* *
4059267 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* * *
4059299 CTTTTTAAGTCCACGACTCCGTGGTA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* *
4059326 CTTTTTAAG-CTCATAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTC-CACAACTCCGTGGCA-TC-TTTT
* *
4059360 CCCTTTAAGTCCACAACTCAGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* *
4059387 CCTTTTAAATCCATAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* *
4059414 CCTTTTAAGTCCACAACTCTGTTGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATC-TTTT
* * *
4059447 CCTTTTAAGCCCACAAGTCAGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
4059473 CCCCTTTCAA
Statistics
Matches: 474, Mismatches: 67, Indels: 82
0.76 0.11 0.13
Matches are distributed among these distances:
26 1 0.00
27 152 0.32
28 3 0.01
29 3 0.01
30 1 0.00
31 3 0.01
32 75 0.16
33 171 0.36
34 43 0.09
35 22 0.05
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (32 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCTTTT
Found at i:4059014 original size:153 final size:150
Alignment explanation
Indices: 4058833--4059491 Score: 521
Period size: 153 Copynumber: 4.3 Consensus size: 150
4058823 TCGGTGGCAA
* *
4058833 CCTTTTGAAGCCCACAAGTCCGTGGCA-CCCTTTAAAGCCCACAACTCCGTGGCACC-C-TTTTA
1 CCTTTT-AAGTCCACAACTCCGTGGCACCCCTTTAAAGCCCACAACTCCGTGGCACCTCTTTTTA
*
4058895 AGTCCACAACTCCGTGGCATCTTTTCCTTTTTAAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
65 AGTCCACAACTCCGTGGCA-C----CC-TTTTAAGCCCACAACTCCGTGGCATCTTTTCCCTTTT
4058960 AAGTCCACAACTCCATGGCATCTTTTC
124 AAGTCCACAACTCCATGGCATCTTTTC
* * *
4058987 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTGAAGTCCACAACTCTGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACC-----CCTTTAAAGCCCACAACTCCGTGGCACC---T
* * * *
4059052 CTTTTTAAGTCCACGACTCCGTGGCACCCTTTTAAGCCCACAAATCCATGGTACTCTTTTTCCC-
58 CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCA-TC-TTTTCCCT
*
4059116 TTTAAGTCCACAACT-TAGTGGCA------C
121 TTTAAGTCCACAACTCCA-TGGCATCTTTTC
* * *
4059140 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-C----CCCTTTAAAGCCCACAACTCCGTGGCACC---T
** * *
4059205 CTTTTTAAGTCCATGACTCCGTGGCACCCTTTTAAGCCCACAACTCCGGGGTACTTCTTGTT-CC
58 CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGG--CATCTT-TTCCC
*
4059269 TTTTAAGTCCACAACTCCATGGCACCTTTT-
120 TTTTAAGTCCACAACTCCATGGCATCTTTTC
* * * * * * * *
4059299 CTTTTTAAGTCCACGACTCCGTGGTA-CCTTTTTAAGCTCATAACTCCGTGGCACTCTTTTTCCC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCCTTTAAAGCCCACAACTCCGTGGCAC-C-TCTT---
* ** *
4059363 TTTAAGTCCACAACTCAGTGGCACCCTTTTAAATCCATAACTCCGTGGCA------CCCTTTTAA
61 TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATCTTTTCCCTTTTAA
** * *
4059422 GTCCACAACTCTGTTGCATCTTTTT
126 GTCCACAACTCCATGGCATCTTTTC
* * *
4059447 CCTTTTAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAA
1 CCTTTTAAGTCCACAACTCCGTGGCACCCCTTT-AAAGCCCACAA
4059492 GTTAGTGGCA
Statistics
Matches: 415, Mismatches: 52, Indels: 80
0.76 0.10 0.15
Matches are distributed among these distances:
147 28 0.07
148 20 0.05
149 5 0.01
150 8 0.02
152 4 0.01
153 149 0.36
154 33 0.08
155 42 0.10
158 22 0.05
159 72 0.17
160 7 0.02
163 2 0.00
164 23 0.06
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (150 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCCCTTTAAAGCCCACAACTCCGTGGCACCTCTTTTTAA
GTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCA
CAACTCCATGGCATCTTTTC
Found at i:4059092 original size:27 final size:27
Alignment explanation
Indices: 4058787--4059432 Score: 313
Period size: 27 Copynumber: 21.3 Consensus size: 27
4058777 TTTCAAAGCA
* * *
4058787 CACAAGTCAGTGGCACCCTTTTCAAAAGCC
1 CACAACTCCGTGGCACCCTTTT---AAGTC
* * * *
4058817 CACAAGTCGGTGGCAACCTTTTGAAGCC
1 CACAACTCCGTGGCACCCTTTT-AAGTC
* * *
4058845 CACAAGTCCGTGGCACCCTTTAAAGCC
1 CACAACTCCGTGGCACCCTTTTAAGTC
4058872 CACAACTCCGTGGCACCCTTTTAAGTC
1 CACAACTCCGTGGCACCCTTTTAAGTC
4058899 CACAACTCCGTGGCATCTTTTCCTTTTTAAGTC
1 CACAACTCCGTGGCA-C----CC-TTTTAAGTC
4058932 CACAACTCCGTGGCATCTTTTCCCTTTTAAGTC
1 CACAACTCCGTGGCA------CCCTTTTAAGTC
*
4058965 CACAACTCCATGGCATCTTTTCCCTTTTAAGTC
1 CACAACTCCGTGGCA------CCCTTTTAAGTC
*
4058998 CACAACTCCGTGGCACCTTGTTCCTTTGAAGTC
1 CACAACTCCGTGGCA-C-----CCTTTTAAGTC
*
4059031 CACAACTCTGTGGCACCTTTTCTTTTTAAGTC
1 CACAACTCCGTGGCACC----C-TTTTAAGTC
* *
4059063 CACGACTCCGTGGCACCCTTTTAAGCC
1 CACAACTCCGTGGCACCCTTTTAAGTC
* * * *
4059090 CACAAATCCATGGTACTCTTTTTCCCTTTAAGTC
1 CACAACTCCGTGG--CAC-----CCTTTTAAGTC
**
4059124 CACAACTTAGTGGCACCCTTTTAAGTC
1 CACAACTCCGTGGCACCCTTTTAAGTC
4059151 CACAACTCCGTGGCACCTTGTCCCTTTTAAGTC
1 CACAACTCCGTGGCA------CCCTTTTAAGTC
*
4059184 CACAACTCCATGGCACCTTTTCTTTTTAAGTC
1 CACAACTCCGTGGCACC----C-TTTTAAGTC
** *
4059216 CATGACTCCGTGGCACCCTTTTAAGCC
1 CACAACTCCGTGGCACCCTTTTAAGTC
* *
4059243 CACAACTCCGGGGTACTTCTTGTTCCTTTTAAGTC
1 CACAACTCCGTGG--C-AC-----CCTTTTAAGTC
*
4059278 CACAACTCCATGGCACCTTTTCTTTTTAAGTC
1 CACAACTCCGTGGCACC----C-TTTTAAGTC
* * *
4059310 CACGACTCCGTGGTACCTTTTTAAG-C
1 CACAACTCCGTGGCACCCTTTTAAGTC
* *
4059336 TCATAACTCCGTGGCACTCTTTTTCCCTTTAAGTC
1 -CACAACTCCGTGGCA--C-----CCTTTTAAGTC
* *
4059371 CACAACTCAGTGGCACCCTTTTAAATC
1 CACAACTCCGTGGCACCCTTTTAAGTC
*
4059398 CATAACTCCGTGGCACCCTTTTAAGTC
1 CACAACTCCGTGGCACCCTTTTAAGTC
4059425 CACAACTC
1 CACAACTC
4059433 TGTTGCATCT
Statistics
Matches: 493, Mismatches: 62, Indels: 125
0.73 0.09 0.18
Matches are distributed among these distances:
26 1 0.00
27 166 0.34
28 28 0.06
29 4 0.01
30 21 0.04
31 3 0.01
32 76 0.15
33 130 0.26
34 40 0.08
35 22 0.04
38 2 0.00
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (27 bp):
CACAACTCCGTGGCACCCTTTTAAGTC
Found at i:4059322 original size:247 final size:247
Alignment explanation
Indices: 4058860--4059491 Score: 787
Period size: 247 Copynumber: 2.6 Consensus size: 247
4058850 GTCCGTGGCA
* * * * *
4058860 CCCTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCTTTTCCTTT
1 CCCTTT-AAGTCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTT
* *
4058925 TTAAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCATGGCATCTTTTCCCT
65 TTAAGTCCACAACTCCATGGCACCTTTTCCCTTTTAAGTCCACAACTCCATGGCA-----TCCCT
* * **
4058990 TTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTGAAGTCCACAACTCTGTGGCACCTTTTCTT
125 TTTAAGCCCACAACTCCGGGGCACCTTGTTCCTTTGAAGTCCACAACTCCATGGCACCTTTTCTT
*
4059055 TTTAAGTCCACGACTCCGTGGCACCCTTTTAAGCCCACAAATCCATGGTACTCTTTTT
190 TTTAAGTCCACGACTCCGTGGCACCCTTTTAAGCCCACAAATCCATGGCACTCTTTTT
*
4059113 CCCTTTAAGTCCACAACTTAGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTT
1 CCCTTTAAGTCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTT
* ** *
4059178 TAAGTCCACAACTCCATGGCACCTTTT-CTTTTTAAGTCCATGACTCCGTGGCA-CCCTTTTAAG
66 TAAGTCCACAACTCCATGGCACCTTTTCCCTTTTAAGTCCACAACTCCATGGCATCCCTTTTAAG
* *
4059241 CCCACAACTCCGGGGTACTTCTTGTTCCTTTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTA
131 CCCACAACTCCGGGGCAC--CTTGTTCCTTTGAAGTCCACAACTCCATGGCACCTTTTCTTTTTA
* * * * * *
4059306 AGTCCACGACTCCGTGGTACCTTTTTAAGCTCATAACTCCGTGGCACTCTTTTT
194 AGTCCACGACTCCGTGGCACCCTTTTAAGCCCACAAATCCATGGCACTCTTTTT
* *
4059360 CCCTTTAAGTCCACAACTCAGTGGCACCCTTTTAAATCCATAACTCCGTGGCA------CCCTTT
1 CCCTTTAAGTCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTT
** * * * * * * *
4059419 TAAGTCCACAACTCTGTTGCATCTTTTTCCTTTTAAGCCCACAAGT-CAGTGGCACCCCTTTCAA
66 TAAGTCCACAACTCCATGGCACCTTTTCCCTTTTAAGTCCACAACTCCA-TGGCATCCCTTT-TA
4059483 AGCCCACAA
129 AGCCCACAA
4059492 GTTAGTGGCA
Statistics
Matches: 334, Mismatches: 39, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
241 30 0.09
242 18 0.05
243 6 0.02
244 10 0.03
245 25 0.07
247 139 0.42
251 22 0.07
252 78 0.23
253 6 0.02
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (247 bp):
CCCTTTAAGTCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTT
TAAGTCCACAACTCCATGGCACCTTTTCCCTTTTAAGTCCACAACTCCATGGCATCCCTTTTAAG
CCCACAACTCCGGGGCACCTTGTTCCTTTGAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAG
TCCACGACTCCGTGGCACCCTTTTAAGCCCACAAATCCATGGCACTCTTTTT
Found at i:4059391 original size:94 final size:93
Alignment explanation
Indices: 4058891--4059462 Score: 525
Period size: 94 Copynumber: 6.1 Consensus size: 93
4058881 GTGGCACCCT
* *
4058891 TTTAAGTCCACAACTCCGTGGCATCTTTTCCTTTTTAAGTCCACAACTCCGTGGCATCTTTTCCC
1 TTTAAGTCCACAACTCCATGGCACCTTTT-CTTTTTAAGTCCACAACTCCGTGGCA------CCC
*
4058956 TTTTAAGTCCACAACTCCATGGCA-TC-TTTTCCC
59 TTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCC
* * * *
4058989 TTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTGAAGTCCACAACTCTGTGGCACCTTTTCT
1 -TTTAAGTCCACAACTCCATGGCACCTT-TTCTTTTTAAGTCCACAACTCCGTGGCACC----C-
* *
4059054 TTTTAAGTCCACGACTCCGTGGCA--C-----CCT
59 TTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCC
* * * ** **
4059082 TTTAAGCCCACAAATCCATGGTACTCTTTTTCCCTTTAAGTCCACAACTTAGTGGCACCCTTTTA
1 TTTAAGTCCACAACTCCATGGCAC-C-TTTTCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTA
*
4059147 AGTCCACAACTCCGTGGCAC-C-TTGTCCC
64 AGTCCACAACTCCGTGGCACTCTTTTTCCC
**
4059175 TTTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCATGACTCCGTGGCACCCTTTTAA
1 -TTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAA
* * * * *
4059240 GCCCACAACTCCGGGGTACTTCTTGTTCCT
65 GTCCACAACTCCGTGGCAC-TCTTTTTCCC
* * *
4059270 TTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCACGACTCCGTGGTACCTTTTTAAG
1 TTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAG
*
4059335 -CTCATAACTCCGTGGCACTCTTTTTCCC
66 TC-CACAACTCCGTGGCACTCTTTTTCCC
* *
4059363 TTTAAGTCCACAACT-CAGTGGCACC----C-TTTTAAATCCATAACTCCGTGGCACCCTTTTAA
1 TTTAAGTCCACAACTCCA-TGGCACCTTTTCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAA
* * *
4059422 GTCCACAACTCTGTTGCA-TCTTTTTCCT
65 GTCCACAACTCCGTGGCACTCTTTTTCCC
*
4059450 TTTAAGCCCACAA
1 TTTAAGTCCACAA
4059463 GTCAGTGGCA
Statistics
Matches: 403, Mismatches: 50, Indels: 52
0.80 0.10 0.10
Matches are distributed among these distances:
87 21 0.05
88 64 0.16
89 4 0.01
92 71 0.18
93 65 0.16
94 99 0.25
95 4 0.01
97 2 0.00
98 22 0.05
99 49 0.12
100 2 0.00
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (93 bp):
TTTAAGTCCACAACTCCATGGCACCTTTTCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAG
TCCACAACTCCGTGGCACTCTTTTTCCC
Found at i:4059506 original size:28 final size:29
Alignment explanation
Indices: 4059453--4059547 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
4059443 TTTTCCTTTT
* *
4059453 AAGCCCACAAGTCAGTGGCACCCCTTTC-A
1 AAGCCCACAAGTTAGTGGCA-ACCTTTCAA
4059482 AAGCCCACAAGTTAGTGGCAACC-TTCAA
1 AAGCCCACAAGTTAGTGGCAACCTTTCAA
* *
4059510 AAGCACACAAGTTGGT-GCAACCCTTTCAA
1 AAGCCCACAAGTTAGTGGCAA-CCTTTCAA
4059539 AAGCCCACA
1 AAGCCCACA
4059548 CAAGTTGGTG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 7 0.12
28 19 0.33
29 32 0.55
ACGTcount: A:0.34, C:0.33, G:0.17, T:0.17
Consensus pattern (29 bp):
AAGCCCACAAGTTAGTGGCAACCTTTCAA
Found at i:4059551 original size:31 final size:30
Alignment explanation
Indices: 4059474--4059557 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 30
4059464 TCAGTGGCAC
*
4059474 CCCTTTC-AAAGCC-CACAAGTTAGTGGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGT-GCAA
4059503 -CC-TTCAAAAG-CACACAAGTTGGTGCAA
1 CCCTTTCAAAAGCCACACAAGTTGGTGCAA
4059530 CCCTTTCAAAAGCCCACACAAGTTGGTG
1 CCCTTTCAAAAG-CCACACAAGTTGGTG
4059558 GCGTCTTCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
27 8 0.17
28 18 0.38
29 8 0.17
31 14 0.29
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (30 bp):
CCCTTTCAAAAGCCACACAAGTTGGTGCAA
Found at i:4059677 original size:39 final size:39
Alignment explanation
Indices: 4059618--4059782 Score: 159
Period size: 39 Copynumber: 4.0 Consensus size: 39
4059608 CCTTTATCTT
* * * *
4059618 TAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCA
1 TAAGCCCAATATCACTGGCCTTGAATCAGCACATTGGCA
** *
4059657 TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGCCCAATATCACTGGCCTTGAATCAGCACATTGGCA
* *
4059696 CCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCA
1 ---------TAAGCCCAATATCACTGGCCTTGAATCAGCACATTGGCA
*
4059744 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCA
1 TAAGCCCAATATCACTGGCCTTGAATCAGCACATTGGCA
4059783 CCTTGTCTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
39 70 0.67
48 34 0.33
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGCCCAATATCACTGGCCTTGAATCAGCACATTGGCA
Found at i:4059733 original size:48 final size:48
Alignment explanation
Indices: 4059671--4059819 Score: 199
Period size: 48 Copynumber: 3.3 Consensus size: 48
4059661 CCCAATATTG
4059671 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCA
1 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCA
* * *
4059719 CTGGCCTTGAATCAGCACATTGGCA---------TAAGCCCAATATCA
1 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCA
*
4059758 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCG
1 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCA
4059806 CTGGCCTTGAATCA
1 CTGGCCTTGAATCA
4059820 ACACATTAAC
Statistics
Matches: 85, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
39 36 0.42
48 49 0.58
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
CTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCA
Found at i:4059736 original size:87 final size:88
Alignment explanation
Indices: 4059576--4059915 Score: 488
Period size: 87 Copynumber: 3.9 Consensus size: 88
4059566 TTCTAAGTCG
* *
4059576 AATATCGCTAGCCTTGAGTCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
*
4059641 AATTAGCACATTGGCATAAGCCC
66 AATCAGCACATTGGCATAAGCCC
* * *
4059664 AATATTGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCACTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
4059728 AATCAGCACATTGGCATAAGCCC
66 AATCAGCACATTGGCATAAGCCC
* *
4059751 AATATCACTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
* ** * *
4059815 AATCAACACATTAACACAAG-CT
66 AATCAGCACATTGGCATAAGCCC
* * * *
4059837 AGTATCGTTGGCCTTGAATCAGCATATTGACACCTTTATCTTTAAGACCAATATCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
* *
4059902 AATTAGCATATTGG
66 AATCAGCACATTGG
4059916 TGCCTTCGTC
Statistics
Matches: 226, Mismatches: 25, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
86 31 0.14
87 164 0.73
88 31 0.14
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (88 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTG
AATCAGCACATTGGCATAAGCCC
Found at i:4060772 original size:13 final size:13
Alignment explanation
Indices: 4060754--4060778 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4060744 ACATGAGTGT
4060754 TGTATCGATACAA
1 TGTATCGATACAA
4060767 TGTATCGATACA
1 TGTATCGATACA
4060779 TAAGTGTTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4060776 original size:32 final size:32
Alignment explanation
Indices: 4060735--4060810 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
4060725 AAACAGTAAC
* *
4060735 TGTATCGATACATGAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGCATCGATACAA
*
4060767 TGTATCGATACATAAGTGTTGCATTGATACAA
1 TGTATCGATACATAAGTGTTGCATCGATACAA
*
4060799 TGTATCGCTACA
1 TGTATCGATACA
4060811 AAGCTACTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGCATCGATACAA
Found at i:4074651 original size:28 final size:28
Alignment explanation
Indices: 4074618--4074700 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
4074608 CGACCTCTGC
4074618 AAAAAAAAAAAAC-AAACAAAAAAAGAAA
1 AAAAAAAAAAAACAAAAC-AAAAAAGAAA
* * *
4074646 AGAAAAGAAAAACAAAACAAAACAGAAA
1 AAAAAAAAAAAACAAAACAAAAAAGAAA
*
4074674 AAAAACAAAAAAAAAATAACAACAAAA
1 AAAAA-AAAAAAACAA-AACAA-AAAA
4074701 AGGGTCTAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 24 0.55
29 12 0.27
30 5 0.11
31 3 0.07
ACGTcount: A:0.84, C:0.10, G:0.05, T:0.01
Consensus pattern (28 bp):
AAAAAAAAAAAACAAAACAAAAAAGAAA
Found at i:4074677 original size:38 final size:37
Alignment explanation
Indices: 4074618--4074701 Score: 93
Period size: 38 Copynumber: 2.3 Consensus size: 37
4074608 CGACCTCTGC
*
4074618 AAAA-AAAAAAAACAAACAAAAAA-AGAAAAGAAAAGA
1 AAAACAAAAAAAACAAACAAAAAACA-AAAAAAAAAGA
*
4074654 AAAACAAAACAAAACAGAA-AAAAAACAAAAAAAAAATA
1 AAAACAAAA-AAAACA-AACAAAAAACAAAAAAAAAAGA
*
4074692 ACAACAAAAA
1 AAAACAAAAA
4074702 GGGTCTAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
36 4 0.10
37 5 0.12
38 29 0.71
39 3 0.07
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.01
Consensus pattern (37 bp):
AAAACAAAAAAAACAAACAAAAAACAAAAAAAAAAGA
Found at i:4074688 original size:10 final size:10
Alignment explanation
Indices: 4074621--4074688 Score: 68
Period size: 10 Copynumber: 6.9 Consensus size: 10
4074611 CCTCTGCAAA
4074621 AAAAAAAAAC
1 AAAAAAAAAC
*
4074631 AAACAAAAA-
1 AAAAAAAAAC
* *
4074640 AAGAAAAGA-
1 AAAAAAAAAC
*
4074649 AAAGAAAAAC
1 AAAAAAAAAC
*
4074659 AAAACAAAAC
1 AAAAAAAAAC
4074669 AGAAAAAAAAC
1 A-AAAAAAAAC
4074680 AAAAAAAAA
1 AAAAAAAAA
4074689 ATAACAACAA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
9 12 0.26
10 25 0.54
11 9 0.20
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:4074701 original size:1 final size:1
Alignment explanation
Indices: 4074618--4074689 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
4074608 CGACCTCTGC
* * * * * * * * * *
4074618 AAAAAAAAAAAACAAACAAAAAAAGAAAAGAAAAGAAAAACAAAACAAAACAGAAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4074683 AAAAAAA
1 AAAAAAA
4074690 TAACAACAAA
Statistics
Matches: 51, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.86, C:0.08, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:4076156 original size:30 final size:30
Alignment explanation
Indices: 4076121--4076211 Score: 125
Period size: 30 Copynumber: 3.1 Consensus size: 30
4076111 ATTCCACACT
4076121 TTTTCAAAAGCCCACAAGTCAGTGGCACCC
1 TTTTCAAAAGCCCACAAGTCAGTGGCACCC
* *
4076151 TTTTCAAAAGCCCACAAGTCCGTGGCAACC
1 TTTTCAAAAGCCCACAAGTCAGTGGCACCC
*
4076181 --TTCAGAAGCCCACAAGTCCA-TGGCACCC
1 TTTTCAAAAGCCCACAAGT-CAGTGGCACCC
4076209 TTT
1 TTT
4076212 ATAGCCCACA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
28 23 0.43
29 1 0.02
30 29 0.55
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.21
Consensus pattern (30 bp):
TTTTCAAAAGCCCACAAGTCAGTGGCACCC
Found at i:4076193 original size:28 final size:28
Alignment explanation
Indices: 4076123--4076259 Score: 127
Period size: 27 Copynumber: 4.9 Consensus size: 28
4076113 TCCACACTTT
4076123 TTCAAAAGCCCACAAGT-CAGTGGCACCC
1 TTCAAAAGCCCACAAGTCCA-TGGCACCC
* *
4076151 TTTTCAAAAGCCCACAAGTCCGTGGCAACC
1 --TTCAAAAGCCCACAAGTCCATGGCACCC
*
4076181 TTCAGAAGCCCACAAGTCCATGGCACCC
1 TTCAAAAGCCCACAAGTCCATGGCACCC
* * * *
4076209 TT-TATAGCCCACAACTCCATGGCATCC
1 TTCAAAAGCCCACAAGTCCATGGCACCC
** * *
4076236 TT-TTAAGTCCACAACTCCATGGCA
1 TTCAAAAGCCCACAAGTCCATGGCA
4076260 TCTTTTCCCT
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
27 41 0.44
28 27 0.29
30 24 0.26
31 1 0.01
ACGTcount: A:0.29, C:0.35, G:0.15, T:0.20
Consensus pattern (28 bp):
TTCAAAAGCCCACAAGTCCATGGCACCC
Found at i:4076276 original size:33 final size:33
Alignment explanation
Indices: 4076234--4076555 Score: 354
Period size: 33 Copynumber: 10.1 Consensus size: 33
4076224 TCCATGGCAT
4076234 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
1 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
*
4076267 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTC
1 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
*
4076300 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTC
1 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
*
4076333 CCTTTTAAGTCCACAACTCCATGGCACCTTGTT-
1 CCTTTTAAGTCCACAACTCCATGGCATCTT-TTC
*
4076366 CCTTTTAAGTCCACAACTCCATGGCACCTTGTT-
1 CCTTTTAAGTCCACAACTCCATGGCATCTT-TTC
*
4076399 CCTTTTAAGTCCACAACTCCATGGCACCTTTT-
1 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
* ** *
4076431 CTTTTTAAGTCCATGACTCCGTGGCA------C
1 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
* *
4076458 CCTTTTAAGCCCACAACTCCGTGGCACTCATTTTC
1 CCTTTTAAGTCCACAACTCCATGGCA-TC-TTTTC
*
4076493 CC-TTTAAGTCCACAACT-CA-GTG-A-C---AC
1 CCTTTTAAGTCCACAACTCCATG-GCATCTTTTC
**
4076519 CCTTTTAAGTCCACAACTCTGTGGCATCTTTTC
1 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
4076552 CCTT
1 CCTT
4076556 ATGATACATT
Statistics
Matches: 253, Mismatches: 17, Indels: 38
0.82 0.06 0.12
Matches are distributed among these distances:
26 3 0.01
27 37 0.15
28 1 0.00
29 2 0.01
30 2 0.01
32 26 0.10
33 163 0.64
34 16 0.06
35 3 0.01
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
Found at i:4085724 original size:13 final size:13
Alignment explanation
Indices: 4085706--4085735 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4085696 ACAATTCATC
4085706 ATGTATCAATACA
1 ATGTATCAATACA
*
4085719 ATGTATCGATACA
1 ATGTATCAATACA
4085732 ATGT
1 ATGT
4085736 CTTATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:4085726 original size:33 final size:33
Alignment explanation
Indices: 4085684--4085752 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
4085674 CCGTTATAAG
4085684 CAATGTATCGATACAAT-TCATCATGTATCAATA
1 CAATGTATCGATACAATGTC-TCATGTATCAATA
* *
4085717 CAATGTATCGATACAATGTCTTATGTATCGATA
1 CAATGTATCGATACAATGTCTCATGTATCAATA
4085750 CAA
1 CAA
4085753 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (33 bp):
CAATGTATCGATACAATGTCTCATGTATCAATA
Found at i:4085825 original size:19 final size:20
Alignment explanation
Indices: 4085782--4085833 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
4085772 TGCCAATTTC
* *
4085782 ATGTATCGATACAATTATCT
1 ATGTATCGATACAATGATAT
4085802 ATGTATCGATACAATGA-AT
1 ATGTATCGATACAATGATAT
4085821 ATGTATCGATACA
1 ATGTATCGATACA
4085834 TTGTATCGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGATAT
Found at i:4085840 original size:13 final size:13
Alignment explanation
Indices: 4085822--4085846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4085812 ACAATGAATA
4085822 TGTATCGATACAT
1 TGTATCGATACAT
4085835 TGTATCGATACA
1 TGTATCGATACA
4085847 AGGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4085844 original size:32 final size:33
Alignment explanation
Indices: 4085803--4085867 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
4085793 CAATTATCTA
* *
4085803 TGTATCGATACAATGAAT-ATGTATCGATACAT
1 TGTATCGATACAAGGAATAATGTATCAATACAT
*
4085835 TGTATCGATACAAGGCATAATGTATCAATACAT
1 TGTATCGATACAAGGAATAATGTATCAATACAT
4085868 CTGGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAGGAATAATGTATCAATACAT
Found at i:4088056 original size:89 final size:89
Alignment explanation
Indices: 4087822--4088082 Score: 276
Period size: 91 Copynumber: 2.9 Consensus size: 89
4087812 GTGAAGAACA
* * * * *
4087822 AGATTAAAGTATCTTTTCGGAATAGTGGGGATGGAGTTTCCCCAAAGGTGAAACTACACGAATGG
1 AGATTAGAGTATC-CTTCGGAATAGTGGGGAT-GAGTTTCCCCAAAGATGAAACTATACGAAGGG
** *
4087887 TAAATTTGAAATTTTTGGGAAGAACG
64 TAAATTTGAAATTTTTGAAAAGAAAG
* * * * *
4087913 AGATTAGAGTATCCCATCGGATTAGTAGGGATGCAATTTCCTCAAAGATGAAACTATACGAAGGG
1 AGATTAGAGTAT-CCTTCGGAATAGTGGGGATG-AGTTTCCCCAAAGATGAAACTATACGAAGGG
4087978 TAAATTTGAAATTTTT-AAAAGAAAG
64 TAAATTTGAAATTTTTGAAAAGAAAG
* * * * *
4088003 -GGTTTGAGTATCCTTCCGGAGTAATGGGGATAGAGTTTCCCCAAAGATGAAACTATACGAAGTG
1 AGATTAGAGTATCCTT-CGGAATAGTGGGGAT-GAGTTTCCCCAAAGATGAAACTATACGAAGGG
*
4088067 TAAATTT-TAATTTTTG
64 TAAATTTGAAATTTTTG
4088083 TTAGAATAGG
Statistics
Matches: 142, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
88 10 0.07
89 56 0.39
90 8 0.06
91 67 0.47
92 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (89 bp):
AGATTAGAGTATCCTTCGGAATAGTGGGGATGAGTTTCCCCAAAGATGAAACTATACGAAGGGTA
AATTTGAAATTTTTGAAAAGAAAG
Found at i:4088112 original size:89 final size:88
Alignment explanation
Indices: 4087849--4088133 Score: 279
Period size: 89 Copynumber: 3.2 Consensus size: 88
4087839 CGGAATAGTG
* * * * *
4087849 GGGATGGAGTTTCCCCAAAGGTGAAACTACACGAA-TGGTAAATTTGAAATTTTTGGGAAGAACG
1 GGGATAGAGTTTCCCCAAAGATGAAACTATACGAAGT-GTAAATTTGAAATTTTT-GAAAGAAAG
* * *
4087913 AGATTAGAGTATCCCATCGGATTAGTA
64 -GGTTAGAGTATCCC-TCGGAGTAATA
* * * *
4087940 GGGAT-GCAATTTCCTCAAAGATGAAACTATACGAAGGGTAAATTTGAAATTTTTAAAAGAAAGG
1 GGGATAG-AGTTTCCCCAAAGATGAAACTATACGAAGTGTAAATTTGAAATTTTTGAAAGAAAGG
* * *
4088004 GTTTGAGTATCCTTCCGGAGTAATG
65 GTTAGAGTATCCCT-CGGAGTAATA
* **
4088029 GGGATAGAGTTTCCCCAAAGATGAAACTATACGAAGTGTAAATTT-TAATTTTTGTTAGAATAGG
1 GGGATAGAGTTTCCCCAAAGATGAAACTATACGAAGTGTAAATTTGAAATTTTTGAAAGAA-AGG
* *
4088093 GTTGGAGTATCTCCTCGGAGGAATA
65 GTTAGAGTATC-CCTCGGAGTAATA
*
4088118 AGGATAGAGTTCTCCC
1 GGGATAGAGTT-TCCC
4088134 AAGGACAAAA
Statistics
Matches: 161, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
88 12 0.07
89 89 0.55
90 14 0.09
91 46 0.29
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (88 bp):
GGGATAGAGTTTCCCCAAAGATGAAACTATACGAAGTGTAAATTTGAAATTTTTGAAAGAAAGGG
TTAGAGTATCCCTCGGAGTAATA
Found at i:4090706 original size:20 final size:20
Alignment explanation
Indices: 4090681--4090735 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
4090671 TTACCCATAC
*
4090681 GTATCGATACATTCTTCAAT
1 GTATCGATACATTCTTAAAT
*
4090701 GTATCGATACATGT-GTAAAT
1 GTATCGATACAT-TCTTAAAT
4090721 GTATCGATACATTCT
1 GTATCGATACATTCT
4090736 GTCTTTTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (20 bp):
GTATCGATACATTCTTAAAT
Found at i:4095385 original size:10 final size:11
Alignment explanation
Indices: 4095367--4095398 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
4095357 TCTCTTGCTC
4095367 CATTTTTCCAT
1 CATTTTTCCAT
4095378 CA-TTTTCCAT
1 CATTTTTCCAT
4095388 CATTTTTCCAT
1 CATTTTTCCAT
4095399 ACTATAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (11 bp):
CATTTTTCCAT
Found at i:4104296 original size:70 final size:70
Alignment explanation
Indices: 4104183--4104325 Score: 277
Period size: 70 Copynumber: 2.0 Consensus size: 70
4104173 AATCGTTTAA
4104183 AGGGGAGAAAAATGAAAACTTTGATATTTGAACTTTCTAATGTGTTTCTTGAAGATGTATATCAG
1 AGGGGAGAAAAATGAAAACTTTGATATTTGAACTTTCTAATGTGTTTCTTGAAGATGTATATCAG
4104248 ATTAC
66 ATTAC
*
4104253 AGGGGAGAAAAATGAAAACTTTGATATTTGAACTTTCTAATGTGTTTCTTGATGATGTATATCAG
1 AGGGGAGAAAAATGAAAACTTTGATATTTGAACTTTCTAATGTGTTTCTTGAAGATGTATATCAG
4104318 ATTAC
66 ATTAC
4104323 AGG
1 AGG
4104326 TTTTGAACTA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (70 bp):
AGGGGAGAAAAATGAAAACTTTGATATTTGAACTTTCTAATGTGTTTCTTGAAGATGTATATCAG
ATTAC
Found at i:4104805 original size:20 final size:19
Alignment explanation
Indices: 4104782--4104855 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
4104772 CACACCCAGA
*
4104782 TGTATCGATACATGCTGCTT
1 TGTATCGATACATG-TGCAT
* *
4104802 TGTATTGATACATGTTCAT
1 TGTATCGATACATGTGCAT
4104821 TGTATCGATACATG-GACAAAT
1 TGTATCGATACATGTG-C--AT
4104842 TGTATCGATACATG
1 TGTATCGATACATG
4104856 AAACTGGCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.37
20 13 0.28
21 16 0.35
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTGCAT
Found at i:4104921 original size:13 final size:13
Alignment explanation
Indices: 4104900--4104930 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
4104890 CGATACATGG
*
4104900 TACAATGTATCGA
1 TACATTGTATCGA
4104913 TACATTGTATCGA
1 TACATTGTATCGA
4104926 TACAT
1 TACAT
4104931 AAAGAAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:4106573 original size:21 final size:21
Alignment explanation
Indices: 4106548--4106596 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
4106538 CATGATATTG
*
4106548 ATGCTTTGATTTTCGTAAGAA
1 ATGCTTTGATTTTCGCAAGAA
4106569 ATGCTTTGATTTTCGCAAGAA
1 ATGCTTTGATTTTCGCAAGAA
4106590 ATGCTTT
1 ATGCTTT
4106597 TCTTTCCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (21 bp):
ATGCTTTGATTTTCGCAAGAA
Found at i:4107695 original size:23 final size:23
Alignment explanation
Indices: 4107639--4107696 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
4107629 TCAAAGTTTG
*
4107639 TCCCCTAAAAGAGACAAAGATGA
1 TCCCCTAAAATAGACAAAGATGA
*
4107662 TCTCCTAAAATAGACAAAGATGA
1 TCCCCTAAAATAGACAAAGATGA
4107685 TCCCCTAAAATA
1 TCCCCTAAAATA
4107697 CAATCTATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.19
Consensus pattern (23 bp):
TCCCCTAAAATAGACAAAGATGA
Found at i:4107908 original size:415 final size:404
Alignment explanation
Indices: 4107148--4107964 Score: 1083
Period size: 415 Copynumber: 2.0 Consensus size: 404
4107138 CAAAACATAG
** * * *
4107148 TCTCTTCATTGGGATGCATGATATTGATGCATTGATTTTCGCAAGAAATACTTTTCTTTCCACTA
1 TCTCTTCATTGGGATGCAAAACATTGAAGCATTGATTTTAGCAAGAAATACTTTTCTTTCCACTA
* * *
4107213 CCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTCTAAA
66 CCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGATGAATTCTCAAAATGATCCCTAAA
*
4107278 AGAACAATCTATTCATTGAGATACATGATATTGATGTTTTGATTATATAATAAAAGCTTTTCTTG
131 AGAACAATCTATTCA-TGAGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTG
* * * * *
4107343 CCACGAATTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTTTTATAACAAT
195 CCACGAATTTCCTTATAATTTGAGATCATACGTCAAATGAAACAAACATGGATTCTTATAACAAT
* * *
4107408 CTCCATTCTTTTCATGATTAGGGAACCAAAACATATTCTCCTTATTGGGATACACGATATTAATG
260 CTCCATTCTTTTCATGATTAGGCAACCAAAACACATCCTCCTTATTGGGATACACGATATTAATG
* *
4107473 CTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTT-TTTCTT-GAAATCAAAGTTTATACCTT
325 CTTTGATTTCATAAGAAAAG-TTTTTTCTCCACCGTTATTCCTTAG-AATCAAAGTTTATACCTT
* *
4107536 AATTGAGACAAACAGGC
388 AACTAAGACAAACAGGC
* * *
4107553 TCTCTTCATTGGGATGCAAAACATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTTTTTCCACTA
1 TCTCTTCATTGGGATGCAAAACATTGAAGCATTGATTTTAGCAAGAAATACTTTTCTTTCCACTA
4107618 CCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGATG-ATCTCCTAAAATAGACAAAGA
66 CCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGATGAAT-T-C-----T---CAAA-A
* *
4107682 TGATCCCCTAAAA-TACAATCTATTCA-GCAGGGTACATGATATTG-TCGTTTTGATTATATAAG
120 TGAT-CCCTAAAAGAACAATCTATTCATG-A-GATACATGATATTGAT-GTTTTGATTATATAAG
*** *
4107744 AAAAGCTTTTCTTGCTGTGACTTTCCTTATAATTTGAGATCATACGTCAAATGAAACAAACATGG
181 AAAAGCTTTTCTTGCCACGAATTTCCTTATAATTTGAGATCATACGTCAAATGAAACAAACATGG
* * * *
4107809 ATTCTTATAACAATCTTCATTCTTTTCATGATGT-GGCAGCCAAAGCACA-CCGTCTTTATTGGG
246 ATTCTTATAACAATCTCCATTCTTTTCATGAT-TAGGCAACCAAAACACATCC-TCCTTATTGGG
*
4107872 ATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTCTCCACCGTTATTCCTTAGAATC
309 ATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTTATTCCTTAGAATC
4107937 AAAGTTTATACCTTAACTAAGACAAACA
374 AAAGTTTATACCTTAACTAAGACAAACA
4107965 TGGATTTACA
Statistics
Matches: 358, Mismatches: 35, Indels: 28
0.85 0.08 0.07
Matches are distributed among these distances:
404 2 0.01
405 100 0.28
406 1 0.00
411 1 0.00
413 1 0.00
414 21 0.06
415 223 0.62
416 9 0.03
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (404 bp):
TCTCTTCATTGGGATGCAAAACATTGAAGCATTGATTTTAGCAAGAAATACTTTTCTTTCCACTA
CCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGATGAATTCTCAAAATGATCCCTAAA
AGAACAATCTATTCATGAGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGC
CACGAATTTCCTTATAATTTGAGATCATACGTCAAATGAAACAAACATGGATTCTTATAACAATC
TCCATTCTTTTCATGATTAGGCAACCAAAACACATCCTCCTTATTGGGATACACGATATTAATGC
TTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTTATTCCTTAGAATCAAAGTTTATACCTTAAC
TAAGACAAACAGGC
Found at i:4111955 original size:612 final size:609
Alignment explanation
Indices: 4107545--4116067 Score: 10169
Period size: 612 Copynumber: 13.9 Consensus size: 609
4107535 TAATTGAGAC
* * ** * * * *
4107545 AAACAGGCTCTCTTCATTGGGATGCAAAACATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTTT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
*
4107610 TTCCACTACCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGAT-GATCTCCTAAAATA
66 TTCCACTACC-TTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGAT-T-C-----T-
* * * * * * ** *
4107674 GACAAAGATGATCCCCTAAAATACAATCTATTCAGCAGGGTACATGATATTG-TCGTTTTGATTA
121 --CATA-ATGATCTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGAT-GTTTTGATTA
*** * * *
4107738 TATAAGAAAAGCTTTTCTTGCTGTGA-CTTTCCTTATAATTTGAGATCATACGTCAAATGAAACA
182 TATAAGAAAAGCTTTTCTTGCCACGATCTTT-CTTATAATTTGAGTTCGTATGTCAAATGAAACA
* * * * *
4107802 AACATGGATTCTTATAACAATCTTCATTCTTTTCATGATGTGGCAGCCAAAGCACA-CCGT-CTT
246 AACAT-GTTTCTTATAATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACATTC-TCCTT
* * *
4107865 TATTGGGATACACGATATTAATGCTTTGATTTCATAGGAAAAG-TTTTTTCTCCACCGTTATTCC
308 T-TTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTC
* * **
4107929 TTAGAATCAAAGTTTATACCTTAACTAAGACAAACATGGATTTACAAAATAATCTCCATTCTTTC
371 TTAAAATCAAAGTTTATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTC
* * * * *
4107994 AATGATTGGACACCATAAACATGTTATCCTCTTTGGGATGCACAATTTTGGCGCATTGGGTATGC
436 AATGATTGGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGC
* * *
4108059 AACAAAAGATTTTCTTGCCATTTATTTCCTTAAAGCAAAGCTCATTCGTCAAATAAA-ACAAAAA
501 AAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAA-AAATACAAAAA
4108123 TGGATTTTTGTAATAATCTCCACTATTTTTTGTGATTAGGCAGCCA
565 TGGA-TTTTGTAATAATCTCCACTATTTTTTGTGATTAGGCAGCCA
* * *
4108169 AAAC-CGCTCTCTTCCTTGGGACGCATGATACTGATGCTTTGATTTTCA-CAAGAACTGGTTTTC
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTT-AGCAAGAAATGGTTTTC
* * *
4108232 TTTCCACTACCTTTTAAAATCAAAGTTTTCCCTTTAAAAAAGACAAAGATGAATTCTCATAATCA
65 TTTCCACTACCTTTTAAAATCAAAGTTTTCCC-TTAAAAGAGACAAAGATGGATTCTCATAATGA
* * * * *
4108297 TCTCCAAAAACACAATCTATTCAATAGGAAACATGGTATTGATGTTTTGATTATATAAGAAAAGC
129 TCTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGC
* *
4108362 TTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTT
194 TTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT-GTTTCTT
* * * * *
4108427 ATAATAATCTTCCTTCTTTTGAGGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACACGA
258 ATAATAATCTTCATTCTTTTCATGATT-GGCAACCAAAACACATTCTCCTTTTTGGGATACACGA
* *
4108492 TATTAATGCTTTGATTTCATAAGAAAAGTTCTTTTCTCCATCG-TTTTTCTTAAAGTCAAAGTTT
322 TATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTT
* *
4108556 ATACCTTAATTGAGACAAACATGGATTTACGTAAAAATCTCCATTCTTTCAATGATTGGGCACCA
386 ATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCA
* * *
4108621 TAAACATGTTATCTTCTTTGGGACGCACAATATTGATGCATTGGTTATGCAAAAAAAGTTTTTCT
451 TAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCT
* * * * * **
4108686 TCCCACTTTTTTCCTTAAAGCAAAGTTAATTCATCAAAAAATACAAAAACAGATTCTTGTAATAA
516 TGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATT-TTGTAATAA
* * *
4108751 TCTCCACCTTTTTTTTCTAATTAGGCAGCCA
580 TCTCCA-CTATTTTTTGTGATTAGGCAGCCA
* * * * * * **
4108782 AAACATGCTCTCCTCATCGGGATGCAAGATATTGAAGCTTTGATTTTAGCAAGAAATGCCTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * * *
4108847 TTCCACTACCTTTTTAAAATCAAAGTTTGTCTCTCAAAAGAGACAAAGATGAATTCTCATAATCA
66 TTCCACTACC-TTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGA
* * * * ***
4108912 TCTCCAAAAACACATTCTATTCAATAGGAAACATGGTACCAATGTTTTGATTATATAAGAAAAGC
129 TCTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGC
* * *
4108977 TTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTT
194 TTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT-GTTTCTT
* * * * *
4109042 ATAATAATCTTCCTTCTTTTGAGGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACACGA
258 ATAATAATCTTCATTCTTTTCATGATT-GGCAACCAAAACACATTCTCCTTTTTGGGATACACGA
* * *
4109107 TATTAATGATTTGATTTCATAAGAAAAGTTCTTTTCTCCACCG-TTTTTCTTAAAGTCAAAGTTT
322 TATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTT
* *
4109171 ATACCTTAATTGAGACAAACATGGATTTACGTAAAAATCTCCATTCTTTCAATGATTGGGCACCA
386 ATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCA
* * * ** * *
4109236 TAAACATGATATTTTCTTTCGGATGCACAATATTGATACTTTGATTATGCAAGAAAAGTTTTTCT
451 TAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCT
* * * * **
4109301 TCCCA-TTTTTTCCCTTAAAGCAAAGTTCATTCGTCAAAAAATATAAAAACAGATTCTTGTAATA
516 TGCCACTTATTT-CCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATT-TTGTAATA
* * * *
4109365 ATCTCCACTTTTTTTTTTTTTATAATTAGGTAGCCA
579 ATCTCCAC-----TATTTTTTGTGATTAGGCAGCCA
* * * * * * *
4109401 AAACATGCTCTCCTCATCGGGATGCAAGATATTGAAGCTTTGATTTTAGCAAGAAATGATTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * *
4109466 TTCCACTACCTTTCTAAAATCAAAGTTTGTCCCTTAAAAGAGACAGAGATGAATTCTCATAATCA
66 TTCCACTACCTTT-TAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGA
* * * *
4109531 TCTCAAAAAACACATTCTGTT-ATGTAGCATACATGGTATTGATGTTTTGATTATATAAGAAAAG
129 TCTCCAAAAACACATTCTTTTCAT-TAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * * * * *
4109595 CTTTTCTTGCCACGATCTTTCCTATAGTTTGAGTTCGTATGTCAAATGAAATAACCATGTTCCCT
193 CTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTT
* * * * ** *
4109660 AGAATAATCTTCATTCTTTTTATGATTAGGCAACCTAAACACATCCTCCTCATTGGGATACACAA
258 ATAATAATCTTCATTCTTTTCATGATT-GGCAACCAAAACACATTCTCCTTTTTGGGATACACGA
* * *
4109725 TATTAATGCTTCGATTTCATAAGAAAAG-TTTTTTCTCCACCG-TTTCTCTTGAAATCAAAGTTT
322 TATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTT
** *
4109788 ATACCTTAATTAAGACAAACATGGATTTACACAATAATCTCCATTCTTTCAACGATTGGGCACCA
386 ATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCA
* *
4109853 TAAACATGTTATCTTCTTTGGGATGCACAATTTTGACGCATTGGTTATGCAAGAAAAGGTTTTCT
451 TAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCT
* * *
4109918 TGCCATTTATTTCCTTAAAGCAAAGCTCATTCATCAAATAATACAAAAATGGATTTTTGTAATAA
516 TGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGA-TTTTGTAATAA
4109983 TCTCCACTATTTTTTGTGATTAGGCAGCCA
580 TCTCCACTATTTTTTGTGATTAGGCAGCCA
* * * * * * * *
4110013 AAACACCCTTTCTTCCTTGGGACGCATGATACTAATGCGTTGATTTTCGCAAGAACTGGTTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * ** *
4110078 TTCCACTACCTTTTAAAATCAATGTTTGCTGTTTAAAAGAGACAAAGATGGATTCTCATAGTGAT
66 TTCCACTACCTTTTAAAATCAAAGTTTTC-CCTTAAAAGAGACAAAGATGGATTCTCATAATGAT
* *
4110143 CTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGATCTTTTGATTATATAAGAAAAGCT
130 CTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* * * *
4110208 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTTGTAAGTCAAATGAAACAAACATGTCTCTTAC
195 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTAT
* * * * * *
4110273 AATAATCTTCATTCTTTTCATTATGTGGCAGCCAAAGCATACTCT-CTTTATTGGGATACACCAT
260 AATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACATTCTCCTTT-TTGGGATACACGAT
* * * * *
4110337 ATTAATGCTTTGGTTTCATAAGAAAAGTTTTTTTCTCCATCGTTATTCCTTAGAATCAGAGTTTA
323 ATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTTA
* * *
4110402 TACCTTAACTAAGACAAACATGGATTTACTTAATAATCTCCATTCTTTCAATAATTGGGCACCAT
387 TACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCAT
* * * * **
4110467 AAACATGTTATCTTTTTTTGGATGCACAATTTTGACGCATTGGGTATATAAGAAAAGTTTTTCTT
452 AAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTT
* * * *
4110532 GCCACTTATTTCCTTAAAGCAAAGCTCATTTGTCAAATAATACAAAAATGGATTTTTCTAGTAAT
517 GCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGA-TTTTGTAATAAT
*
4110597 CTCCACTATTTTTTGTGATTAGGTAGCCA
581 CTCCACTATTTTTTGTGATTAGGCAGCCA
* * * * * * * ** *
4110626 AAACACGCTCTCTTCCTTAGGACGCATGATACTGATGCTTTTATTTTCGCAATAACTCATTTTCA
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * *
4110691 TTCCACTACCTTTTAAAATCAAAGTTTGCCTCTTAAAAGATACAAGGATGGATTCTCATAATGAT
66 TTCCACTACCTTTTAAAATCAAAGTTTTCC-CTTAAAAGAGACAAAGATGGATTCTCATAATGAT
* * *
4110756 CTCCAAAAATACATTCTTTTCATTAGGATGCATGATATTGATATTTTGATTATATAAGAAAAGCT
130 CTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* * * * *
4110821 TTTCTTGCCACGAACTTTCTTATAATTTGAGTTCATAAGTCAATTGAAACAAACATGTTTCTTAC
195 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTAT
* * * *
4110886 AATAATCTTCGTTCTTTTCATGATGTGGCAGCCAAAGCACACTCT-CTTTATTGGGATACACGAT
260 AATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACATTCTCCTTT-TTGGGATACACGAT
* * * * * * *
4110950 ATTAATGCTTTGGTTTCATAGGAAAAGTTTTTTTTCTCCATCGTTATTCCATAGAATCAATGTTT
323 ATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTT
* * * * *
4111015 ATACCTTAACTAAGACAAACATGGATTTACTTAATAATCTCCATTCTATCAATAATTTGGCACCA
386 ATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCA
* *
4111080 TAAACATGTTATCTTCTTTTGGATGCACAATTTTGACGCATTAGGTATAT--AAGAAAAGTTTTT
451 TAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATT-GGT-TATGCAAGAAAAGTTTTT
* *
4111143 CTTGCCACTAATTTCCTTAAAGCAAAGCTCATTCGTCAAATAATACAAAAATGGATTTTTGTAAT
514 CTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGA-TTTTGTAAT
* *
4111208 AGTCTCCACTATTTTTTGTGATTAGGTAGCCA
578 AATCTCCACTATTTTTTGTGATTAGGCAGCCA
** ** * *
4111240 AAACATACTCTCTTCCTTGGGACACATGATATTGATGCTTTGATTTTCGCAAGAACTGGTTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * *
4111305 TTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAGATACAAGGATGGATTCTCATAATGAT
66 TTCCACTACCTTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGAT
* **
4111370 CTCCAAAAATACATTCTTTTCATTAGGATTTATGATATTGATGTTTTGATTATATAAGAAAAGCT
130 CTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* * * *
4111435 TTTCTTGCCACGAACTTTCTTATAATTTGAGTTCGTAAGTCAATTGAAACAAACATGTTTCTTAC
195 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTAT
* * *
4111500 AATAATCTTCATTCTTTTCATGATTAAGCAACCAAAACATATTCTCCTTTTTGGGATACACGCTA
260 AATAATCTTCATTCTTTTCATGATT-GGCAACCAAAACACATTCTCCTTTTTGGGATACACGATA
** *
4111565 TTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCATATTTTTTCTTAAAATCAAAGTTTACA
324 TTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACGTTTTTTCTTAAAATCAAAGTTTATA
* * ** *
4111630 CCTTAATTGAGACAAACATGGCTTTACGTAATAATCTCCATTCTTTCAACAATTAGGCACCATAA
389 CCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCATAA
* * *
4111695 ACATGTTATCTTCTTTGGGATGCGCAATATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGC
454 ACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGC
* *
4111760 CACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAGAATGCAAAAATGGATATTTGTAATAATCT
519 CACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGAT-TTTGTAATAATCT
*
4111825 CCACTATTTTTAGTGATTAGGCAGCCA
583 CCACTATTTTTTGTGATTAGGCAGCCA
* * * ** * * *
4111852 AAACACACTTTCTTCCTTGGGACGCATGATACCGATGCTTTGATTTTTGCAAGAATTGGTTTTTT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* *
4111917 TTCCACTACCTTTTAAAATCAAAGTTTTCCATTTAAAAGGGACAAAGATGGATTCTCATAATGAT
66 TTCCACTACCTTTTAAAATCAAAGTTTTCC-CTTAAAAGAGACAAAGATGGATTCTCATAATGAT
* * *
4111982 CTCCAAAAGCACATTCTTTTCATTAGGATGCATGATATTGATCTTTTGATTATATAAGAAAAGCT
130 CTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* *
4112047 TTTCTTGCCACGATTTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTCT
195 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTAT
*
4112112 AATAATCTTCATTCTTTTCATGATGTGGCAGCCAAAACACACTT-T-CTTTATTGGGATACACGA
260 AATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACA-TTCTCCTTT-TTGGGATACACGA
* * * * * *
4112175 TATTAATGCTTTGGTTTCATAGGAAAAGTTTTTTTTCTCCATCGTTATTCCATAGAATCAAAGTT
322 TATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTT
* * * *
4112240 TATACCTTAACTAAGACAAACATGGATTTACTTAATAATCTCCATTCTATCAATAATTGGGCACC
385 TATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACC
* *
4112305 ATAAACATGTTATCTTCTTTTGGATGCACAATTTTGACGCATTAGGTATAT--AAGAAAAGTTTT
450 ATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATT-GGT-TATGCAAGAAAAGTTTT
* * *
4112368 TCTTGCCACTAATTTTCTTAAAGCAAAGCTCATTCGTCAAATAATACAAAAATGGATTTTTGTAA
513 TCTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGA-TTTTGTAA
* *
4112433 TACTCTCCACTATTTTTTGTGATTAGGTAGCCA
577 TAATCTCCACTATTTTTTGTGATTAGGCAGCCA
* ** * *
4112466 AAACATGCTCTCTTCCTTGGGACACATGATATTGATGCTTTGATTTTCGCAAGAACTGGTTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* *
4112531 TTCCACTACCTTTTAAAATCAAAGTTTTCCCCTTAAAAGATACAAGGATGGATTCTCATAATGAT
66 TTCCACTACCTTTTAAAATCAAAGTTTT-CCCTTAAAAGAGACAAAGATGGATTCTCATAATGAT
* * * * *
4112596 CTCCGAAAATACATTCTTTTCATTAGGATGCGTGATATTGATTTTTTGATTATATAAGAAAAGCT
130 CTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* * * * *
4112661 TTTCTTGCCACGATCTTTCTTGTAATTTGAGTTCGTAAGTCAATTGAAACAAACCTGTTTCTTAC
195 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTAT
* * *
4112726 AATAATCTTCATTCTTTTCATGATTAGCAAACCAAAACATATTCTCATTTTTGGGATACACGATA
260 AATAATCTTCATTCTTTTCATGATTGGC-AACCAAAACACATTCTCCTTTTTGGGATACACGATA
*
4112791 TTAAAGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCATC-TTTTTTCTTAAAATCAAAGTTTAT
324 TTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTTAT
* * * * * * *
4112855 ACCTTAATTGAGACAAACATGGATTTATGCAATAGTCTCCATTCTTTCAATGACTAGGCACCTTA
388 ACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCATA
* * *
4112920 AACATGTTATATTTTTTGGGATGCACAATATTGACGCATTGGATATGCAAGAAAAGTTTTTCTTG
453 AACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTG
* * * * *
4112985 TCACTTATTTCTTTAAAGCAAAGTTCATTTGTCAAAAAATACAAAACA--GATTATTGCAATAAT
518 CCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAA-ATGGATT-TTGTAATAAT
4113048 CTCCACT-TTTTTT-TCGAATTAGGCAGCCA
581 CTCCACTATTTTTTGT-G-ATTAGGCAGCCA
* * *** * * * *
4113077 AAACACACTCTCCTT-ATCAAGATGCAAGATTTTGAAGCTTTGATTTTAGCAAGAAATGCTTTTC
1 AAACACGCTCT-CTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTC
* * * *
4113141 TTTCCACTACCCTTTTAAAATCAAAGTTTGTCCCTCAAAAGAGACAAAGATGAATTCTTATAATC
65 TTTCCACTA-CCTTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATG
* * * *
4113206 ATCTCCAAAAACACATTCTATTCAATAGGATACATGGTATTGATGTTTTCATTATATAAGAAAAG
128 ATCTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * * *
4113271 CTTTTCTTGCCATGATCTTT-TCTATAATTTGAGTTCGTATGTCAAATGAATCAAAAATGGATTC
193 CTTTTCTTGCCACGATCTTTCT-TATAATTTGAGTTCGTATGTCAAATGAAACAAACAT-GTTTC
* * *
4113335 TTATAGTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTCTTGGGATACAT
256 TTATAATAATCTTCATTCTTTTCATGATT-GGCAACCAAAACACATTCTCCTTTTTGGGATACAC
* * * * *
4113400 GATATTAAGGTTTTGATTTCATAACAAAAG-TTTTTTCTCCATCG-TTTTACTTGAAATCAAAGT
320 GATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGT
* * ** *
4113463 TTATACCTTAATTGAGACAAACATGGATTTGCACAATAATCTTCATTCTTTCAATGATTGGGCAC
384 TTATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCAC
* * * **
4113528 CCTAAACATGTTATTTTCTTTGGGATGCACAATACT-AATCAGTTGGTTATGCAAGAAAAGTTTT
449 CATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCA-TTGGTTATGCAAGAAAAGTTTT
* * * * * *
4113592 TCTTGCCACTTATTTTCTTAAAGAAAAGTTCATTTGCCAAAAAATACAAATATGGATTCTTGTAA
513 TCTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATT-TTGTAA
* * * * *** * **
4113657 TAGTGTCCATTTTTTTTTCCAATTTGATAGCCA
577 TAATCTCCACTATTTTTTGTGATTAGGCAGCCA
* * * * *
4113690 AAACACGCTCTCAT-CTTCGAGATGCAGGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTC
1 AAACACGCTCTCTTCCTT-GGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTC
* * *
4113754 TTTCCACTTCTTTTTTCAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGAT-GA----C------
65 TTTCCACTAC-CTTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATG
* * ** * *
4113808 --CTCCTAAAACTCATTCTACTCAGTAAGG-TACATGATATTGTTGTTTTGATTATATAAGAAAA
128 ATCTCCAAAAACACATTCTTTTCA-TTAGGATACATGATATTGATGTTTTGATTATATAAGAAAA
* * * * *
4113870 GCTTCTATTGCC-CTGA-CTTTCCTTATAATTTGAGATCGTATGTCAAATCAAACAAACATGGAT
192 GCTTTTCTTGCCAC-GATCTTT-CTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT-GTT
* *
4113933 TCTTATAATAATCTTCATTCTTTTCATGATGTGGTAACCAAAACACACTCTCCTTTTTGGGATAC
254 TCTTATAATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACATTCTCCTTTTTGGGATAC
* * * * * *
4113998 ACGATATTAATGCTTTGGTTCCATAAGCAAAGTTTTTTTCTCCACCGGTATTCCTTAAAATCAAA
318 ACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAA
* * ** *
4114063 GTTTATACCTTAACTAAGACAAACATAGATTTACG------TCTTAATTCTTTCAACGATTGGGC
382 GTTTATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGC
* * *
4114122 ACCATAAACATGTTATCTTTTTTGGGATGCACAATTTTGACGCATTAGG-TACGCAAGAAAAGTT
447 ACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATT-GGTTATGCAAGAAAAGTT
* * * * * *
4114186 TTTCCTACCACTTATTTCCTTAAAGCAAAGCTCATTCGACAAAAAACACAAAAATGAATTTTTAT
511 TTTCTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGA-TTTTGT
* *
4114251 AATATTCTCCACAATTTTTTGTGATTAGGCAGCCA
575 AATAATCTCCACTATTTTTTGTGATTAGGCAGCCA
* * ** * * * * * *
4114286 AAACATGATCTCTTCCTTACGATGCATGATATTGATGCTCTGACTTTCGTAAGAACTAGTTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * * *
4114351 TTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAGTGACAAAGATCGATTCTGATAATGAT
66 TTCCACTACCTTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGAT
* *
4114416 CTTCAAAAACACATTCTTTTCATTAGGATGCATGATATTGATGTTTTGATTATATAAGAAAAGCT
130 CTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* * *
4114481 TTTCTTGCCACGATCTTTCTTAAAATTTAAGTTCATATGTCAAATGAAACAAACATGTTTCTTAT
195 TTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTAT
* * * * *
4114546 AATAATCTTCATTCTTTTCATGATTAAGCAATCAAAACATATTCTCCTTATTGGGATACACAATA
260 AATAATCTTCATTCTTTTCATGATT-GGCAACCAAAACACATTCTCCTTTTTGGGATACACGATA
*
4114611 TTAATGCTTTGATTTCATAAGAAAAG-TTTTTTCTCCACCGTTTTTT-TT-AAATCGAAGTTTAT
324 TTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTTAT
*
4114673 ACCTTAATTAAGACAAACATGGATTTACGTAATAATCTTC-TCTCTTTCAATGATTGGGCACCAT
388 ACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCAT-TCTTTCAATGATTGGGCACCAT
* *
4114737 AAAC-TCGTTATCTTCTTTGGGAAGCACAATATTGACACATTGGTTATGCAAGAAAAGTTTTTCT
452 AAACAT-GTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCT
* * * **
4114801 TGCCACTGATTTCCTTAAAGCAAAGTTCAGTCGTCAAAAAATACAAAAACAGATTCTTGTAATAA
516 TGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATT-TTGTAATAA
* * * *
4114866 TCTCCACTTTTTTTTCTAATTAGGCAGCTA
580 TCTCCACTATTTTTTGTGATTAGGCAGCCA
* * * * * * *
4114896 AAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCT
1 AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
* * * * *
4114961 TTCCACTACCTTCCTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATAGATTCTCATAGTGA
66 TTCCACTACCTT-TTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGA
* * * * *
4115026 TCTTCAAAAACACATTCTTTTTATTAGGATGCATGGTATTGATGTTTTGACTATATAAGAAAAGC
129 TCTCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGC
* *
4115091 TTTTCTTGCCATGATCTTTCTTAAAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTA
194 TTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTA
* **
4115156 TAATAATCTTCATTCTTTTCATGATAAGGCAACCAAAACACATTCTCCTTAGTGGGATACACGAT
259 TAATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACATTCTCCTTTTTGGGATACACGAT
** * * *
4115221 ATTAATATTTTGATTTTATAAGAAAAGTTTTTTTCTCTACCG-TTTTTCTTGAAATCAAAGTTTA
323 ATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAAGTTTA
* * * *
4115285 TACCTTAATTGAGACAAACATGGATTTATGCAATAATCTCCTTTCTTTCAATGATTGGGCACCAT
387 TACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCAT
* * *
4115350 AAACTTGTTATCTTCTTTGGGATGCACAATATTGACCCATTGATTATGCAAGAAAAGTTTTTCTT
452 AAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTT
* * * * * * *
4115415 GCCACTTATTTCCTTAAGGCAAAGTTCATTTGCCAAAAAATACAAATACGGATTCTTGTAATAGT
517 GCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATT-TTGTAATAAT
* * * *
4115480 CTCCACTTTTTTTTCTGACTAGACA-CGCA
581 CTCCACTATTTTTTGTGATTAGGCAGC-CA
* * * * * * * * *
4115509 AAACACACCCTCAT-CTTCGAGATGCAAGATATTAAAGCTTTTAATTTTAGCAAGAAATGCTTTT
1 AAACACGCTCTCTTCCTT-GGGATGCATGATATTGATGC-TTTGATTTTAGCAAGAAATGGTTTT
* * * *
4115573 CTTTCCACTACCTTTTTAAAATCGAATTTTGTCCCTTAAAAGGGACAAGGAT-GA-TCTC-----
64 CTTTCCACTACC-TTTTAAAATCAAAGTTT-TCCCTTAAAAGAGACAAAGATGGATTCTCATAAT
* * * * *
4115631 --T-T---AAAGCACATTCTATTCATTAAGG-TACATGATGTTGTTGGTTTGATTATATAAGAAA
127 GATCTCCAAAAACACATTCTTTTCATT-AGGATACATGATATTGATGTTTTGATTATATAAGAAA
* * * * *
4115689 AGCTTTTCTGGCCACGA-CTTTCCTTTTAATTTGAGATCGTATGTCAAACGAAACAAACATGGAT
191 AGCTTTTCTTGCCACGATCTTT-CTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT-GTT
* * * * * *
4115753 TCTTATAATAATCGTCATTCTTTCCATGATGTGGCAGCCTAAACACACTCTTCTTTTTGGGATAC
254 TCTTATAATAATCTTCATTCTTTTCATGAT-TGGCAACCAAAACACATTCTCCTTTTTGGGATAC
* * * *
4115818 ACGATATTAATGCTTTGGTTCCATAAGAAAAGTTTTTTTCTCCACCGTTATTCCTTAAAATCAAA
318 ACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA-CGTTTTTTCTTAAAATCAAA
** *
4115883 GTTTATACCTTAACCAAGACAAACATGGATTTAC-T--TAAT-TCCATTCTTTCAATGGTTGGGC
382 GTTTATACCTTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGC
* *
4115944 ACCATAAACATGTTATCTTCTTTAGGATGCACAATTTTGACGCATTAGG-TATGCAAGAAAAGTT
447 ACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATT-GGTTATGCAAGAAAAGTT
** * *
4116008 TTTCTTGCCTTTTATTTCCTTAAAGCAAAGCTCATTCGTCAAATAACACAAAAATGGATT
511 TTTCTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATT
4116068 CTCATAATGA
Statistics
Matches: 6953, Mismatches: 817, Indels: 283
0.86 0.10 0.04
Matches are distributed among these distances:
595 36 0.01
596 203 0.03
597 10 0.00
599 131 0.02
600 191 0.03
601 110 0.02
602 145 0.02
603 44 0.01
604 41 0.01
605 3 0.00
606 18 0.00
607 91 0.01
608 94 0.01
609 12 0.00
610 233 0.03
611 589 0.08
612 1527 0.22
613 1097 0.16
614 1218 0.18
615 501 0.07
616 10 0.00
617 202 0.03
618 97 0.01
619 248 0.04
621 5 0.00
622 33 0.00
623 59 0.01
624 5 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (609 bp):
AAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGGTTTTCT
TTCCACTACCTTTTAAAATCAAAGTTTTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATC
TCCAAAAACACATTCTTTTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTATA
ATAATCTTCATTCTTTTCATGATTGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATT
AATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACGTTTTTTCTTAAAATCAAAGTTTATACC
TTAATTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
ATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCA
CTTATTTCCTTAAAGCAAAGCTCATTCGTCAAAAAATACAAAAATGGATTTTGTAATAATCTCCA
CTATTTTTTGTGATTAGGCAGCCA
Found at i:4116457 original size:274 final size:273
Alignment explanation
Indices: 4116055--4117360 Score: 1059
Period size: 274 Copynumber: 4.5 Consensus size: 273
4116045 GTCAAATAAC
* * *
4116055 ACAAAAATGGATTCTCATAATGATCTCCAAAAGCACATTCTTTTTATTAGGATGCATGATATTGA
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGA
* *
4116120 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTAAGTTCGTATGTC
66 TGTTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGTC
* * * *
4116185 AAACGAAACAAACATGTCTTTTTGGGATTAGGTAGGCAAAACACACTCTTTTCCTTGGGATGCAT
131 AAATGAAACAAACATGTCTTTTTGTGATTAGGTAGCCAAAACACACTCTCTTCCTTGGGATGCAT
*
4116250 GATATTGATGCTCTGATTTTCATAAGAACTAGTTTTCTTTCCTCTACCTTTTAAAATCAAAGTTT
196 GATATTGATGCTTTGATTTTCATAAGAACTAGTTTTCTTT-CTCTACCTTTTAAAATCAAAGTTT
*
4116315 GCCCCTTAAAAGAG
260 GCCCCTTAAAAAAG
*
4116329 ACAAAGATAGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCAAT-ATATTG
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGC-ATGATATTG
*
4116393 ATATTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGT
65 ATGTTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGT
* * * *
4116458 CAAATGAAACAAACAAGTTTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAACAC
130 CAAATGAAAC--A-AA----C-----AT-GTC-T--TT-TTGT---GATTAGGTAGCCAAAACAC
* * * * * *
4116523 ATTCTCCTT-ATAGGGATACATGATATTAATGCTTTGA-TTTCATAAGAA-AAG-TTT-TTTCTC
175 ACTCT-CTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCATAAGAACTAGTTTTCTTTCTC
* * *** ***
4116583 CACCGTTTTTCTTGAAATCAAAGTTTATACCTTAATTGAG
239 TACC----TT-TTAAAATCAAAGTTTGCCCCTTAAAAAAG
* * * * *
4116623 ACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGT-TATC
1 ACAAAGATGGA-TTCT-C-ATAA--T-GA-TC--TCCA--A------A--A-ACACAT-TCT-T-
* * * ** * ** * * * *
4116687 TTCTTTGGGATACAAAATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTAT-TA
43 TTCATTAGGATGCATGATATTGATGTTTTGATTATACAAGAAAAGTTTTTCTTGCCA-TGATCTT
* **** * * * *
4116751 CCTTA-AAGCAAAGCTCAT-TCGTCAAAT-AATATAAAAATGGGTTTTTGTAATTATCTCCATAA
107 TCTTATAATTTGAGTTCGTAT-GTCAAATGAA-ACAAACA--------TG--------T-C----
* * * * * *
4116813 TTTTTTATGATTAGGTAGCCAAAACACGCCCTCTTCCCTAGGATGCATGATATTGATGCTTCGAT
149 -TTTTTGTGATTAGGTAGCCAAAACACACTCTCTTCCTTGGGATGCATGATATTGATGCTTTGAT
* * * *
4116878 TTTCATAAGAACTGGTTTTCTTTCCACTACCTTTCAAAATCAAAGTGTGCCCCTTAAAAAAG
213 TTTCATAAGAACTAGTTTTCTTT-CTCTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAG
* * *
4116940 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTTATCAGGATGCATGATACTGA
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGA
* *
4117005 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
66 TGTTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGTC
* * * *
4117070 AAATGAAACAAACATGTTTTTTTGTGATTAGGCAGCCAAAACACGCTCTCTTCCTTGGGATGCGT
131 AAATGAAACAAACATGTCTTTTTGTGATTAGGTAGCCAAAACACACTCTCTTCCTTGGGATGCAT
* * *
4117135 GATATTGATGCTTTGATTTTCATAGGAATTGGTTTTCTTTCTACTACCTTTTAAAATCAAAGTTT
196 GATATTGATGCTTTGATTTTCATAAGAACTAGTTTTCTTTCT-CTACCTTTTAAAATCAAAGTTT
* *
4117200 GTCCCTTAAAAAAA
260 GCCCCTTAAAAAAG
*
4117214 ACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGA
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGA
* * * *
4117279 TGTTTTGCTTATACAAGAAAAGTTTTTCTCGCCATAATCTTTCTCATAATTTGAGTTCGTATGTC
66 TGTTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGTC
4117344 AAATGAAACAAACATGT
131 AAATGAAACAAACATGT
4117361 TTCTTATAAT
Statistics
Matches: 806, Mismatches: 139, Indels: 174
0.72 0.12 0.16
Matches are distributed among these distances:
273 1 0.00
274 375 0.47
275 2 0.00
276 1 0.00
277 2 0.00
280 1 0.00
281 1 0.00
286 2 0.00
287 2 0.00
288 3 0.00
289 6 0.01
290 5 0.01
291 5 0.01
292 2 0.00
293 13 0.02
294 77 0.10
295 53 0.07
296 22 0.03
297 13 0.02
298 1 0.00
299 1 0.00
300 2 0.00
301 2 0.00
303 4 0.00
305 1 0.00
306 1 0.00
308 3 0.00
310 2 0.00
311 3 0.00
312 3 0.00
313 2 0.00
314 13 0.02
315 19 0.02
316 56 0.07
317 73 0.09
318 14 0.02
319 2 0.00
320 6 0.01
321 5 0.01
322 5 0.01
323 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (273 bp):
ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGA
TGTTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGTC
AAATGAAACAAACATGTCTTTTTGTGATTAGGTAGCCAAAACACACTCTCTTCCTTGGGATGCAT
GATATTGATGCTTTGATTTTCATAAGAACTAGTTTTCTTTCTCTACCTTTTAAAATCAAAGTTTG
CCCCTTAAAAAAG
Found at i:4116485 original size:136 final size:136
Alignment explanation
Indices: 4116066--4116490 Score: 369
Period size: 136 Copynumber: 3.1 Consensus size: 136
4116056 CAAAAATGGA
* *
4116066 TTCTCATAATGATCTCCAAAAGCACATTCTTTTTATTAGGATGCATGATATTGATGTTTTGATTA
1 TTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGATGTTTTGATTA
*
4116131 TATAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTAAGTTCGTATGTCAAACGAAACAA
66 TATAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTAAGTTCGTATGTCAAAAGAAACAA
*
4116196 ACATGTCT
131 ACAAG--T
* * * * *** * * * * *
4116204 TTTTGGGATTA-GGTAGGC-AAAACACACTCTTTTCCTTGGGATGCATGATATTGATGCTCTGAT
1 TTCT--CATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGATGTTTTGAT
* * * * * * ** * **** *
4116267 TTTCATAAGAACTAG-TTTTCTTTCC-T-CTACCTT-TTAAAATCAAAGTTTGCCCCTTAAAAGA
64 TAT-ATAAGAA-AAGTTTTTCTTGCCATGAT-CTTTCTTATAATTTAAGTTCGTATGTCAAAAGA
* * *
4116328 GACAAAGATAGA
126 AACAAACA-AGT
*
4116340 TTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCAAT-ATATTGATATTTTGATT
1 TTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGC-ATGATATTGATGTTTTGATT
* * *
4116404 ATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACA
65 ATATAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTAAGTTCGTATGTCAAAAGAAACA
4116469 AACAAGT
130 AACAAGT
* *
4116476 TTCTTATAATAATCT
1 TTCTCATAATGATCT
4116491 TCATTCTTTT
Statistics
Matches: 206, Mismatches: 68, Indels: 28
0.68 0.23 0.09
Matches are distributed among these distances:
134 5 0.02
135 18 0.09
136 60 0.29
137 51 0.25
138 48 0.23
139 19 0.09
140 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (136 bp):
TTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGATGTTTTGATTA
TATAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTAAGTTCGTATGTCAAAAGAAACAA
ACAAGT
Found at i:4117274 original size:136 final size:136
Alignment explanation
Indices: 4116851--4117285 Score: 388
Period size: 136 Copynumber: 3.2 Consensus size: 136
4116841 CCCTCTTCCC
* * *
4116851 TAGGATGCATGATATTGATGCTTCGATTTTCATAAGAACTGGTTTTCTTTCCACTACCTTTCAAA
1 TAGGATGCATGATATTGATGCTTTGATTTTCATAAGAAATGGTTTTCTTTCCACTACCTTTTAAA
* * * *
4116916 ATCAAAGTGTGCCCCTTAAAAAAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCT
66 ATCAAAGTTTGTCCCTTAAAAAAAACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCT
*
4116981 TTTTAT
131 TTTCAT
* * * * * * * * *
4116987 CAGGATGCATGATACTGATGTTTTGATTAT-ATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTA
1 TAGGATGCATGATATTGATGCTTTGATTTTCATAAGAAATGGTTTTCTTTCCACTA-CCTT-TTA
* *** * *** * ** * ** * ** * ** * *
4117051 TAATTTGAGTTCGTATGTCAAATGAAACAAACATGTTTTTTTGTGATTAGGCAGCC-AAAACACG
64 AAATCAAAGTTTGTCCCTTAAAAAAAACAAAGATGGATTCTCAT-AAT-GATATCCAAAAACACA
* * *
4117115 CTCTCTTCCT
127 TTCTTTTCAT
* * * * *
4117125 TGGGATGCGTGATATTGATGCTTTGATTTTCATAGGAATTGGTTTTCTTTCTACTACCTTTTAAA
1 TAGGATGCATGATATTGATGCTTTGATTTTCATAAGAAATGGTTTTCTTTCCACTACCTTTTAAA
4117190 ATCAAAGTTTGTCCCTTAAAAAAAACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCT
66 ATCAAAGTTTGTCCCTTAAAAAAAACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCT
4117255 TTTCAT
131 TTTCAT
*
4117261 TAGGATGCATGATATTGATGTTTTG
1 TAGGATGCATGATATTGATGCTTTG
4117286 CTTATACAAG
Statistics
Matches: 209, Mismatches: 84, Indels: 12
0.69 0.28 0.04
Matches are distributed among these distances:
135 24 0.11
136 66 0.32
137 56 0.27
138 42 0.20
139 21 0.10
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (136 bp):
TAGGATGCATGATATTGATGCTTTGATTTTCATAAGAAATGGTTTTCTTTCCACTACCTTTTAAA
ATCAAAGTTTGTCCCTTAAAAAAAACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCT
TTTCAT
Found at i:4117675 original size:885 final size:885
Alignment explanation
Indices: 4116055--4117973 Score: 3119
Period size: 885 Copynumber: 2.2 Consensus size: 885
4116045 GTCAAATAAC
* *
4116055 ACAAAAATGGATTCTCATAATGATCTCCAAAAGCACATTCTTTTTATTAGGATGCATGATATTGA
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTTATTAGGATGCATGATATTGA
* *
4116120 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATTTAAGTTCGTATGTC
66 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
* * * * *
4116185 AAACGAAACAAACATGTCTTTTTGGGATTAGGTAGGCAAAACACACTCTTTTCCTTGGGATGCAT
131 AAATGAAACAAACATGTTTTTTTGGGATTAGGCAGCCAAAACACACTCTCTTCCTTGGGATGCAT
4116250 GATATTGATGCTCTGATTTTCATAAGAACTAGTTTTCTTTCCTCTACCTTTTAAAATCAAAGTTT
196 GATATTGATGCTCTGATTTTCATAAGAACTAGTTTTCTTTCCTCTACCTTTTAAAATCAAAGTTT
* * *
4116315 GCCCCTTAAAAGAGACAAAGATAGATTCTCATAATGATCTCCAAAAACACATTCTTTTCATTAGG
261 GCCCCTTAAAAAAAACAAAGATAGATTCTCATAATGATATCCAAAAACACATTCTTTTCATTAGG
* * *
4116380 ATGCAATATATTGATATTTTGATTATACAAGAAAAGTTTTTCTTGCCATGATCTTTCTTATAATT
326 ATGCAATATATTGATATTTTGATTATACAAGAAAAGTTTTTCTCGCCATAATCTTTCTCATAATT
*
4116445 TGAGTTCGTATGTCAAATGAAACAAACAAGTTTCTTATAATAATCTTCATTCTTTTCACGATTAG
391 TGAGTTCGTATGTCAAATGAAACAAACAAGTTTCTTATAATAATCTTCACTCTTTTCACGATTAG
4116510 GCAACCAAAACACATTCTCCTTATAGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGT
456 GCAACCAAAACACATTCTCCTTATAGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGT
**
4116575 TTTTTCTCCACCGTTTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTATG
521 TTTTTCTCCACCGTTTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACA
*
4116640 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCTTTGGGATACAAAAT
586 CAAGAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCTTTGGGATACAAAAT
4116705 ATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTACCTTAAAGCAAAGCTCATT
651 ATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTACCTTAAAGCAAAGCTCATT
* * * *
4116770 CGTCAAATAATATAAAAATGGGTTTTTGTAATTATCTCCA-TAATTTTTTATGATTAGGTAGCCA
716 CATCAAATAATACAAAAATGGATTTTTGTAATAATCTCCACT-ATTTTTTATGATTAGGTAGCCA
* * *
4116834 AAACACGCCCTCTTCCCTAGGATGCATGATA-TTGATGCTTCGATTTTCATAAGAACTGGTTTTC
780 AAACACGCCCTCTTCCCTAGGACGCATGAAAGTT-ATGCTTCGATTTTCACAAGAACTGGTTTTC
*
4116898 TTTCCACTACCTTTCAAAATCAAAGTGTGCCCCTTAAAAAAG
844 TTTCCACTACCTTTCAAAATCAAAGTGTGCACCTTAAAAAAG
* *
4116940 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTTATCAGGATGCATGATACTGA
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTTATTAGGATGCATGATATTGA
4117005 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
66 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
* * *
4117070 AAATGAAACAAACATGTTTTTTTGTGATTAGGCAGCCAAAACACGCTCTCTTCCTTGGGATGCGT
131 AAATGAAACAAACATGTTTTTTTGGGATTAGGCAGCCAAAACACACTCTCTTCCTTGGGATGCAT
* * * *
4117135 GATATTGATGCTTTGATTTTCATAGGAATTGGTTTTCTTT-CTACTACCTTTTAAAATCAAAGTT
196 GATATTGATGCTCTGATTTTCATAAGAACTAGTTTTCTTTCCT-CTACCTTTTAAAATCAAAGTT
* *
4117199 TGTCCCTTAAAAAAAACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCTTTTCATTAG
260 TGCCCCTTAAAAAAAACAAAGATAGATTCTCATAATGATATCCAAAAACACATTCTTTTCATTAG
* *
4117264 GATGC-ATGATATTGATGTTTTGCTTATACAAGAAAAGTTTTTCTCGCCATAATCTTTCTCATAA
325 GATGCAAT-ATATTGATATTTTGATTATACAAGAAAAGTTTTTCTCGCCATAATCTTTCTCATAA
*
4117328 TTTGAGTTCGTATGTCAAATGAAACAAACATGTTTCTTATAATAATCTTCACTCTTTTCACGATT
389 TTTGAGTTCGTATGTCAAATGAAACAAACAAGTTTCTTATAATAATCTTCACTCTTTTCACGATT
* *
4117393 AGGCAACCAAAACACATTCTCGTTATTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAA
454 AGGCAACCAAAACACATTCTCCTTATAGGGATACATGATATTAATGCTTTGATTTCATAAGAAAA
*
4117458 GTTTTTTCTCCACCGTTTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATTGATTTA
519 GTTTTTTCTCCACCGTTTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTA
* *
4117523 CATAAGAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCTTTGGGA-AGCAC
584 CACAAGAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCTTTGGGATA-CAA
* * *
4117587 AATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCATTTATTTCCTTAAAGCAAAGCTC
648 AATATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTACCTTAAAGCAAAGCTC
* *
4117652 ATTCATCAAATAATGCAAAAATGGATTTTTGTAATAATCTCCACTATTTTTTCTGATTAGGTAGC
713 ATTCATCAAATAATACAAAAATGGATTTTTGTAATAATCTCCACTATTTTTTATGATTAGGTAGC
* * * * * * *
4117717 CAAAACACGCTCTCTTCCTTGGGACGCGTGAAAGTTATGCTTTGATTTTCGCAAGAATTGGTTTT
778 CAAAACACGCCCTCTTCCCTAGGACGCATGAAAGTTATGCTTCGATTTTCACAAGAACTGGTTTT
* * * *
4117782 CTTTCCACTACCTTTTAAAATCAAAGTTTTCACCTTAAAAGAG
843 CTTTCCACTACCTTTCAAAATCAAAGTGTGCACCTTAAAAAAG
* * *
4117825 ACAAAGATGGATTCTCATAATGATATCCAAAACCACATTCTTTTCATTAGGATGCATGATATTGA
1 ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTTATTAGGATGCATGATATTGA
* * * *
4117890 TGTTTTGATTACATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGTGTTTGTATGTC
66 TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
* *
4117955 AGATGAATCAAACATGTTT
131 AAATGAAACAAACATGTTT
4117974 CTTATAATAA
Statistics
Matches: 956, Mismatches: 73, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
884 5 0.01
885 948 0.99
886 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (885 bp):
ACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTTTTTATTAGGATGCATGATATTGA
TGTTTTGATTATATAAGAAAAGTTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
AAATGAAACAAACATGTTTTTTTGGGATTAGGCAGCCAAAACACACTCTCTTCCTTGGGATGCAT
GATATTGATGCTCTGATTTTCATAAGAACTAGTTTTCTTTCCTCTACCTTTTAAAATCAAAGTTT
GCCCCTTAAAAAAAACAAAGATAGATTCTCATAATGATATCCAAAAACACATTCTTTTCATTAGG
ATGCAATATATTGATATTTTGATTATACAAGAAAAGTTTTTCTCGCCATAATCTTTCTCATAATT
TGAGTTCGTATGTCAAATGAAACAAACAAGTTTCTTATAATAATCTTCACTCTTTTCACGATTAG
GCAACCAAAACACATTCTCCTTATAGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGT
TTTTTCTCCACCGTTTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACA
CAAGAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCTTTGGGATACAAAAT
ATTGACGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTACCTTAAAGCAAAGCTCATT
CATCAAATAATACAAAAATGGATTTTTGTAATAATCTCCACTATTTTTTATGATTAGGTAGCCAA
AACACGCCCTCTTCCCTAGGACGCATGAAAGTTATGCTTCGATTTTCACAAGAACTGGTTTTCTT
TCCACTACCTTTCAAAATCAAAGTGTGCACCTTAAAAAAG
Found at i:4119183 original size:610 final size:611
Alignment explanation
Indices: 4117086--4120084 Score: 3991
Period size: 611 Copynumber: 4.9 Consensus size: 611
4117076 AACAAACATG
* * * * * * ** *
4117086 TTTTTTTGTGATTAGGCAGCCAAAACACGCTCTCTTCCTTGGGATGCGTGATATTGATGCTTTGA
1 TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGA
* * * * * *
4117151 TTTT--CATAGGAATTGGTTTTCTTTCTACTACCTTTTAAAATCAAAGTTTGTCCCTTAAAAAAA
66 TTTTAGCA-A-GAAATGCTTTTCTTTCCACTACCTTTTAAAATCAAAGTTTATCCCTTAAAAGAG
* * * * *
4117214 ACAAAGATGGATTCTCATAATGATATCCAAAAACACATTCTTTTCATTAGGATGCATGATATTGA
129 ACAAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGA
* * * * ** *
4117279 TGTTTTGCTTATACAAGAAAAGTTTTTCTCGCCATAATCTTTCTCATAATTTGAGTTCGTATGTC
194 TGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
* *
4117344 AAATGAAACAAACATGTTTCTTATAATAATCTTCACTCTTTTCACGATTAGGCAACCAAAACACA
259 AAATGAAACAAACATGTTTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACA
* *
4117409 TTCTCGTTATTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGT
324 TTCTCTTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGT
* ** *
4117474 TTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATTGATTTACATAAGAATCTCCATT
389 TTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATT
* *
4117539 CTTTCAATGATTGGGCACCATAAACATGTTATCTTCTTTGGGAAGCACAATATTGATGCATTGGT
454 CTTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGT
* * * * * *
4117604 TATGCAAGAAAAGTTTTTCTTGCCATTTATTTCCTTAAAGCAAAGCTCATTCATCAAATAATGCA
519 TATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCATGAAAAAATACA
* *
4117669 AAAATGGATTTTTGTAATAATCTCCACT
584 AAAACGGATTCTTGTAATAATCTCCACT
* * * * * * * * ** * *
4117697 ATTTTTTCTGATTAGGTAGCCAAAACACGCTCTCTTCCTTGGGACGCGTGAAAGTT-ATGCTTTG
1 TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATA-TTGAAGCTTTG
* * *
4117761 ATTTTCGCAAGAATTGGTTTTCTTTCCACTACCTTTTAAAATCAAAGTTT-TCACCTTAAAAGAG
65 ATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTAAAATCAAAGTTTATC-CCTTAAAAGAG
* * * * * *
4117825 ACAAAGATGGATTCTCATAATGATATCCAAAACCACATTCTTTTCATTAGGATGCATGATATTGA
129 ACAAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGA
* * *
4117890 TGTTTTGATTACATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGTGTTTGTATGTC
194 TGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTC
* * * *
4117955 AGATGAATCAAACATGTTTCTTATAATAATCTTCATTCTTTTCAGGATTAGGCAACTAAAACACA
259 AAATGAAACAAACATGTTTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACA
* * *
4118020 TTCTCCTTATTGGGATACACGGTATTAATGCTTTGATTTTATAAGAAAAGTTTTTTCTCCACCGT
324 TTCTCTTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGT
* *
4118085 TTTTCTTGAAATCAAAGTTTATATCATAATTGAGACAAACATGGATTTACGCAATAATCTCCATT
389 TTTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATT
4118150 CTTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAAATATTGATGCATTGG
454 CTTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCAC-AATATTGATGCATTGG
* *
4118215 TGATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCGTGAAAAAATAC
518 TTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCATGAAAAAATAC
*
4118280 AAAAACGGATTCTTGTAATAATCTACACTT
583 AAAAACGGATTCTTGTAATAATCTCCAC-T
4118310 TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGA
1 TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGA
*
4118375 TTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTCTAAAATCAAAGTTTATACCTTAAAAGAGA
66 TTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTT-TAAAATCAAAGTTTATCCCTTAAAAGAGA
* * * * * *
4118440 CAATGACGAATTCTCATAATCATCTCCAAAAACACATTATATTCAGTGGGATACATGGTATTGAT
130 CAAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGAT
* * *
4118505 GTTTTGAATATATAAGAAAAGCTTTTCTTACCACGATCTTTCTTATAATTTGAGTTCATATGTCA
195 GTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCA
* * * * *
4118570 AATGAAATAAACATGTTTCTTTTAATAATCTTCATTTTTTTCATGATAAGGCAACCACAACACAT
260 AATGAAACAAACATGTTTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACAT
* * *
4118635 TCTCTTTAGTGGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTCTCCGCCGTT
325 TCTCTTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTT
* * *
4118700 TTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACTTGGATTCACGCAATAATCTCAATTC
390 TTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATTC
4118765 TTTCAATGATTGGGCACCATAAACTTGTT-TCTTCTTTGGGATGCACAATATTGATGCATTGGTT
455 TTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTT
*
4118829 ATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCATGAAAAAATATAA
520 ATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCATGAAAAAATACAA
*
4118894 AAATGGATTCTTGTAATAATCTCCACT
585 AAACGGATTCTTGTAATAATCTCCACT
* *
4118921 TTTTTTTCTAATTAGGCAGCCAAAACGCGCTCCCCTCATCGAGATGCAAGATATTGAAGCTTTGA
1 TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGA
* * * *
4118986 -TTTAGAAAGAAATGTTTTTCTTTCCACTACATTTCTAAAATCAAAGTTTATCCCTTAAAAGAGG
66 TTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTT-TAAAATCAAAGTTTATCCCTTAAAAGAGA
* * * *
4119050 TAAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCAGTGGGATACATGGTATTGAT
130 CAAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGAT
*
4119115 GTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGGTCTTTCTTATAATTTGAGTTCGTATGTCA
195 GTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCA
* *
4119180 AATGAAACAAACATGTTTCTTATAATAATCTTCATTCTCTTCGTGATTAGGCAACCAAAACACAT
260 AATGAAACAAACATGTTTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACAT
*
4119245 TCTCTTTATTGGGGTACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTT
325 TCTCTTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTT
* * ** * *
4119310 TTTCTTAAAATCAAAGTTTATACTTTAATAAAGACAAACATGGATTTACGCAATAATCTCTATTT
390 TTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATTC
** * * * * * *
4119375 TTTCAGCGATTGGGCACCATAAACATATTAT-TTCTATGGGATGCACAATATGGACGCATTGGTC
455 TTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTT
* * * *
4119439 ATGCAAGAAAAGTTTTTTTTGTCGCTTATTTCCTTAAAGCAAAGTTCA-T-TTGCCAAAAAATAC
520 ATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCATG--AAAAAATAC
* * *
4119502 AAATACAGATTCTTGTAATAGTCTCCACT
583 AAAAACGGATTCTTGTAATAATCTCCACT
* * * * * * *
4119531 TTTTTTTCTAACTAGACACCCAAAACACGCTTTCATCTTCGAGATGCAAGATATTAAAGCTTTGA
1 TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGA
*
4119596 TTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGA
66 TTTTAGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTTTATCCCTTAAAAGAGA
* * *
4119661 CAAAGATG-A---TC----TC--CT---AAAGCACATTCTATTCATTAAGG-TACATGATGTTGT
130 CAAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCATT-AGGATACATGATATTGA
* * * ** *
4119712 TCTTTTGATTATATAAGAAAACCTTTTCTTGCCACG-GCTTTCCTTATAATTTGAAATCATATGT
194 TGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTT-CTTATAATTTGAGTTCGTATGT
* * * * * * *
4119776 CGAACGAAACAAACATGGATTCTTATAATAATCTTCAATCTTTTCTTGATGT-GGCAGCCTAAAC
258 CAAATGAAACAAACAT-GTTTCTTATAATAATCTTCATTCTTTTCATGAT-TAGGCAACCAAAAC
* * * * *
4119840 GCACTT-TCCTTT-TTGGGATACACAATATTAATGCTTTGGTTCCACAAGAAAAGTTTTTTTCTC
321 ACA-TTCT-CTTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTCTC
** ** * * * * * *
4119903 CATTGTTATCCCTTAAAATCAAAGTTTATACCTTAACTAAGACAAACACGAATTTACGTAATAAT
383 CACCGTT-TTTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAAT
*
4119968 CTCCATTCTTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATTTTGATG
447 CTCCATTCTTTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATATTGATG
* * * *
4120033 CATTAGTTACGCTAGAAAAGTTTTTCTTGCCATTTATTTCCTTAAAGCAAAG
512 CATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAG
4120085 CTCATTTGTC
Statistics
Matches: 2139, Mismatches: 226, Indels: 55
0.88 0.09 0.02
Matches are distributed among these distances:
597 4 0.00
598 94 0.04
599 80 0.04
600 21 0.01
601 84 0.04
602 65 0.03
603 2 0.00
607 2 0.00
608 2 0.00
609 1 0.00
610 548 0.26
611 581 0.27
612 210 0.10
613 102 0.05
614 342 0.16
615 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (611 bp):
TTTTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCATCGAGATGCAAGATATTGAAGCTTTGA
TTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTAAAATCAAAGTTTATCCCTTAAAAGAGAC
AAAGATGAATTCTCATAATCATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATG
TTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAA
ATGAAACAAACATGTTTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATT
CTCTTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTTT
TTCTTGAAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATTCT
TTCAATGATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTA
TGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAGTCATGAAAAAATACAAA
AACGGATTCTTGTAATAATCTCCACT
Found at i:4121508 original size:615 final size:611
Alignment explanation
Indices: 4120105--4125460 Score: 6519
Period size: 613 Copynumber: 8.8 Consensus size: 611
4120095 AAATAATACA
* * * * * * *
4120105 TTCTTGCCATGATTTTTCTTATAATTTGGGTTTGTATGTTAAATGAAACAAAAAT-GTTTCCTAT
1 TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTAT
* * * *
4120169 AATAATCTTCATTTTTTTCATGATAAGGCAACCAAAACGCATTCTTCTTATTGGTATACACGATA
66 AATAATCTTCATTCTTTTCATGAT-AGGCAACCAAAACACATTCTCCTTATTGGGATACACGATA
*
4120234 TTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTTTTTCTTGAAATCAAAGTTTATAC
130 TTAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTTTTTCTTAAAATCAAAGTTTATAC
* * *
4120299 CTTAATTGAGAGAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCATAAA
195 CTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAA
* * *
4120364 CATGTTATTTTCTATGGGACGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCC
260 CATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCC
* * * * * *
4120429 ACTTATTTCCTTAGAGTAAAGTTCATT-TTCCAAAAAATACAAAAACAGACTCTTGTAATAATCA
325 ACTTATTTCCTTAAAGCAAAGTTCATTCGT-CAAAAAATACAAAAACTGATTCTTGTAATAATCT
* * * * *
4120493 CCACTTTTTTTTCTAATTAGGCAGCCAAAACATGCTCTCCTCATCGAGATGCATGACATTGAAGC
389 CCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAGC
* *
4120558 TTTGATTTTAGCAAGAAATGCTTTTCTTTCCTCTACCTTTTTAAAATCAAAGTTTGCCCCTTAAA
454 TTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAA
* *
4120623 AGAGACAAAGATGAATTCTCATAATCATCCCCAAAACACATTCTATTCAATGGGATACATGGTAT
519 AGAGACAAAGATGAATTCTCATAATCATCTCCAAAACACATTCTATTCAATGGGATACATGATAT
*
4120688 TGATGTTTTGGTTATATAAGAAAAGCTT
584 TGATGTTTTGATTATATAAGAAAAGCTT
** * * *
4120716 TTCTTGCCACGATAATTCTTACAATTTTAGTTCGTATGCCAAATGAAACAAAAATGGATTCTTAT
1 TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTAT
* **
4120781 AATAATCTTCATTCTTTTCATGATAAGGCAACCAAAACGCATTCTTTTTATTGGGATACACGATA
66 AATAATCTTCATTCTTTTCATGAT-AGGCAACCAAAACACATTCTCCTTATTGGGATACACGATA
* * *
4120846 TTAATGCATTGATTTCATAAGAAAAGTTTTTCTCTCCACTGTTTTTCTTAAAATCAAAGTTTACA
130 TTAATGCTTTGATTTCATAAGAAAAGTTTTT-TCTCCACCGTTTTTCTTAAAATCAAAGTTTATA
* *
4120911 GCTTAATTAAGACAAACATCGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAA
194 CCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAA
* * * *
4120976 GCATGTTATCTTCTTTGGGACGCACATTATTGATGCATTGGTTATGCAAGAAAAGTTTTGCTT-C
259 ACATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGC
4121040 GCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACTGATTCTTGTAATAATC
324 -CACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACTGATTCTTGTAATAATC
* * *
4121105 TCCACTTTTTTTTTCTAATTAGGCAGCCAAAACATGCTCTCCTCATCGGGATGCACGATATTGAA
388 TCCAC-TTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAA
4121170 GCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTA
452 GCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTA
* *
4121235 AAAGAGACAAAGATGAATTCTCATAATCATCTCCAAATACACATTCTATTCAATGGGATACGTGG
517 AAAGAGACAAAGATGAATTCTCATAATCATCTCCAAA-ACACATTCTATTCAATGGGATACATGA
*
4121300 TATTGATGTTTTCATTATATAAGAAAAGCTT
581 TATTGATGTTTTGATTATATAAGAAAAGCTT
* ** *
4121331 TTCTTACCATAATCTTTCTTATAATTTGAGTTCGTATTTCAAATGAAACAAAAATGGATTCTTAT
1 TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTAT
* * * *
4121396 AATAATCTTCATTTTTTTCATAACTAGGCAACCAAAAAACATTCTCCTTTTTGGGATACACGATA
66 AATAATCTTCATTCTTTTCATGA-TAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATA
* * ** *
4121461 TTAATGCTTTGATTTCATAAGAAAAATTTTTTGCTCCACCATTTTTCTTAGGATAAAAGTTTATA
130 TTAATGCTTTGATTTCATAAGAAAAGTTTTTT-CTCCACCGTTTTTCTTAAAATCAAAGTTTATA
* * * *
4121526 CCTTAATTGAGACAAACATGGTTTTACGCAATAATCTACATTCTTTCAATGACTGGGCACCATAA
194 CCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAA
* * * *
4121591 ACATGTTTTTTTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAGGTTTTTCTTG
259 ACATG-TTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTG
* * * * * * * *
4121656 CCACTTATTTCCTTAAGGGAAAATTCATT-TTCCAAAAATACAAATACGGATTCTTGAAATAATC
323 CCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACTGATTCTTGTAATAATC
* *
4121720 TCCAC-TTTTTTTCTGATTGGGCAACCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAG
388 TCCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAG
* * *
4121784 CTTTGAATTTAGCAAGAAATGCTTTTCTTTGCACTACCTTTTTAAAATCAAAGTTTGTCCCCTAA
453 CTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAA
* * * *
4121849 AAGAGAGAAAGATG-A---TC----TC--CT--AAAACACATTTTATTCAGTGGGGTACATGATA
518 AAGAGACAAAGATGAATTCTCATAATCATCTCCAAAACACATTCTATTCAATGGGATACATGATA
**
4121902 TTTTTGTTTTGATTATATAAGAAAAGCTT
583 TTGATGTTTTGATTATATAAGAAAAGCTT
* * * * * * * *
4121931 TTCTTGCCAGGA-CTTTCCTTATAATTTGAGATCATACGTCAAACGAAACAAACATTGATTCTGA
1 TTCTTGCCACGATCTTT-CTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTA
* * ** * *
4121995 TAATAATCTTCATTCTTCTCATGATATGGCAGCCAAAACACACCCTCCATATTAGGATACACGAT
65 TAATAATCTTCATTCTTTTCATGATA-GGCAACCAAAACACATTCTCCTTATTGGGATACACGAT
* * * *
4122060 ATTAATTCTTTGGTTTCATAAGAAAAGTTTTTTTCTCCACCGTTATTCTTTAGAATCAAAGTTTA
129 ATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTCTCCACCGTTTTTC-TTAAAATCAAAGTTTA
* * **
4122125 TACCTTAACTAAGACAAACATGGACTTACATAATAATCTCCATTCTTTCAATGATTGGGCACCAT
192 TACCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCAT
* * * * *
4122190 AAACATGTTATCTTCTTTGGGATGCAAAATTTTCACT-CATTGGGTATACAAGAAAAGTTTTTCT
257 AAACATGTTATCTTCTTTGGGATGCACAATATTGA-TGCATTGGTTATGCAAGAAAAGTTTTTCT
* * *
4122254 TGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAATAATACAAAAA-TGGATTTTTGTAATA
321 TGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACT-GATTCTTGTAATA
* * * * * * * * * * * *
4122318 ATCTCCCCTATTTTTTGTGATTAGGTAGCCAAAGCACGCTCTCTTCCTTGGGACGCATGAGACTG
385 ATCTCCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTG
* * * * *
4122383 ATGCTTTGATTTTCGCAAGAACTGGTTTTCTTTCCACTACC-TTTTAAAATCAAAGTTTGCCCCT
450 AAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT
* * * * * * * * *
4122447 TAAAAGAGACAATGATGGATTCCCATAATGATCTCCAAAAACAGATTCTTTTCATTAGGATGCAT
515 TAAAAGAGACAAAGATGAATTCTCATAATCATCTCC-AAAACACATTCTATTCAATGGGATACAT
* * *
4122512 GATACTGATGTTTTGATTATATAAGAACAGTTT
579 GATATTGATGTTTTGATTATATAAGAAAAGCTT
* * * * *
4122545 TTCTTGCCATGATCCTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT-GTTTTTTAT
1 TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTAT
* * * * * *
4122609 AATAATCTTTATTCCTTCCATGATTAGGCAACCAAAACACATTTTCCTTATTTGCATACACGATA
66 AATAATCTTCATTCTTTTCATGA-TAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATA
* * * *
4122674 TTAGTGCTTTGATTTCATAAGACAAGTTATTTTCTCCACCTTTTTTCTCAAAATCAAAGTTTATA
130 TTAATGCTTTGATTTCATAAGAAAAGTT-TTTTCTCCACCGTTTTTCTTAAAATCAAAGTTTATA
* * * * * * * *
4122739 CCTCAACTGAGACAAACATGGATCTATGCAATAATCTCCATTCTTTTAGTGATTGGGCACCCTAA
194 CCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAA
* * * * * * *
4122804 ACATGTTATCTTTTTTAGGAAGCACAATATTGACGCATTGGATATGTAGGAAAAGTTTTTCTTGC
259 ACATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGC
* * * ** * *
4122869 CACTTAATTCCTTGAAGCAAAGTTCTTTTTTCCAAAAATACAAAAACGGATTCTTGTAATAATCT
324 CACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACTGATTCTTGTAATAATCT
* * *
4122934 CCACTTTTCTTTTCTAATTAGGCAGCCAAAACACGCTCTCCTCACCGAGATGCAAGATATTGAAG
389 CCACTTTT-TTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAG
*
4122999 CCTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAA
453 CTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAA
* *
4123064 AAGAGACAAAGACGAATTCTCATAATCATCTCCAAAAGCACATTCTATTCAATGGGATACATGGT
518 AAGAGACAAAGATGAATTCTCATAATCATCTCCAAAA-CACATTCTATTCAATGGGATACATGAT
4123129 ATTGATGTTTTGATTATATAAGAAAAGCTT
582 ATTGATGTTTTGATTATATAAGAAAAGCTT
* ** * * *
4123159 TTCTTGCCACGATCTCTCTTATAATTTGAGTTCGTATGTC-TTTCGTAACAAAAACGCATTCTTA
1 TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAAT-GAAACAAAAATGGATTCTTA
* * * * * * *
4123223 TAATAATCTTCTTTTTTTTCATAATTAGGCAACCAAAAAACATTCACTTTTTTGGGATACACGAT
65 TAATAATCTTCATTCTTTTCATGA-TAGGCAACCAAAACACATTCTCCTTATTGGGATACACGAT
*
4123288 ATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCACCGTTTTTCTTAGAATCAAAGTTTAT
129 ATTAATGCTTTGATTTCATAAGAAAAGTTTTTT-CTCCACCGTTTTTCTTAAAATCAAAGTTTAT
* * * * **
4123353 ACCTTAATTAATATAAACATGGATTTACGCAATAATCTCCATTATTTCAATGATTCGGTGCCATA
193 ACCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATA
* * ** * *
4123418 AACATGTTATTTTCTTTGGGATGCACCATATTGACACATTGTTTATGTAAGAAAAGTTTTTCTTG
258 AACATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTG
* * * * * *
4123483 CCACTTATTTCCTTAAAACAAAGTTCATTTGCCAAAAAATACAAATACGGATTCTTGTAACAATC
323 CCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACTGATTCTTGTAATAATC
* * *
4123548 TCTAC-TTTTTTT-T-ATTAAGCAACCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAG
388 TCCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAG
* *
4123610 CTTTGA-TTTAGCAAGAAATGCTTTTCTTTCCACTACTTTTTTAAAATCAAAGTTTGTCCCCTAA
453 CTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAA
* * *
4123674 AAGAGACAATA-ATG-A---TC----TC--CT--AAAACACATTCTATTTAGTAGGG-TACAAGA
518 AAGAGACAA-AGATGAATTCTCATAATCATCTCCAAAACACATTCTATTCAAT-GGGATACATGA
* *
4123725 AATTGTTGTTTTGATTATATAAGAAAAGCTT
581 TATTGATGTTTTGATTATATAAGAAAAGCTT
** *
4123756 TTCTTGCCACGA-CTTTCCTTATAATTTGAAATCGTATGTGAAATGAAACAAAAATGGATTCTTA
1 TTCTTGCCACGATCTTT-CTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTA
* * * * * * *
4123820 TAATAATCTTCATTCTTTTCATGATGTGGCAGCCAAAACATACTCTCCATATTGGGATGCACAAT
65 TAATAATCTTCATTCTTTTCATGAT-AGGCAACCAAAACACATTCTCCTTATTGGGATACACGAT
* * * * * * *
4123885 ATTAATGCTTTGGTTTTAGAAGAAAAGTTTTTTTCTCCTCTGTTTTCCTTAGAATCAAAGTTTAT
129 ATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTCTCCACCGTTTTTCTTAAAATCAAAGTTTAT
* * * *
4123950 ACCTTAACTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCTTA
193 ACCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATA
* *
4124015 AACATGTTATCTTCTTTGGGATGCACAATTTTGATGCATTGGGTATGCAAGAAAAGTTTTTCTTG
258 AACATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTG
* * * * *
4124080 CCACTTATTTCCTTAAGGCAAAGCTCATTCGTCAAATAATACAAAAA-TGGATTTTTGTAGTAAT
323 CCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACT-GATTCTTGTAATAAT
* * * * *
4124144 CTCCTCTATTTTTTCTGATTAGGCAGCCAAAACACACTTTCCTCATCGAGATGCAAGATATTGAA
387 CTCCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAA
* *
4124209 GCTTTGATTTTAGTAAGAAATGCTTTTCTTTCCACTATCTTTTTAAAATCAAAGTTT-TCCCTTA
452 GCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTA
* * * * * *
4124273 AAAGATACAATGATGAATTCTCATAATGATCTCCAAAAAAACAATCTATTCATTGGGATACATGA
517 AAAGAGACAAAGATGAATTCTCATAATCATCTCC-AAAACACATTCTATTCAATGGGATACATGA
* * *
4124338 TATTGTTGTTTTGATTGTACAAGAAAAGCTT
581 TATTGATGTTTTGATTATATAAGAAAAGCTT
* *
4124369 TTCTTGCCACGA-CTTTCCTTATAATTTGAGATT-GTATGTCCAATGAAACAAACATGGATTCTT
1 TTCTTGCCACGATCTTT-CTTATAATTTGAG-TTCGTATGTCAAATGAAACAAAAATGGATTCTT
* * *
4124432 ATAATAATCTTCATTCTTTTCATGATGTGGCAACCAAAACACACTCGCCTTATTGGGATACACGA
64 ATAATAATCTTCATTCTTTTCATGAT-AGGCAACCAAAACACATTCTCCTTATTGGGATACACGA
* * * * *
4124497 TATGAACGCTTTGGTTTCATAAGAAAAGTTTTATTCTCCACCGTTTTCCTTAGAAA-CAAACTTT
128 TATTAATGCTTTGATTTCATAAGAAAAGTTTT-TTCTCCACCGTTTTTCTTA-AAATCAAAGTTT
* * * * *
4124561 ATACATT-GTCTAAGACAAACTTGGATTTATGCAATAATCTCCATTCTTTCAATGATTAGGCACC
191 ATACCTTAAT-TAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACC
*
4124625 ATAAACATGTTATCTTCTTTGGGATGCACAATTTTGATGCATTGGTTATGCAAGAAAAGTTTTTC
255 ATAAACATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTC
* * * * * *
4124690 TTGCCACTTATTTCCTTGAAGCAAAGTTCATTCGTTAAATAATACAAAAA-TGGGTTTTTGTAGT
320 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACT-GATTCTTGTAAT
* * * * * ** * * * *
4124754 AATTTCTAATTTTTTTTGTGATTAGGCAGCGAAAACGTGCTCTCTTCCTTGGGATAG-ATGATAT
384 AATCTCCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGAT-GCAAGATAT
* * * * *
4124818 TGATGCTTTGTTTTTCA-CAAGAACTG-GTTTCTTTCCACTACCTTTTTGAAATCAAAGTTTGTC
448 TGAAGCTTTGATTTT-AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTC
* * * *
4124881 CTTTAAAAAAGACAAAGATGAATTCTCATAATCATCTCCAAAA-ACATATCCGATTCATTGGGAT
512 CCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAAACACAT-T-CTATTCAATGGGAT
*
4124945 ACATGATATTGATGCTTTGATTATATAAGAAAAGCTT
575 ACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
* * * ** * *
4124982 TTCTTGCCACAATCTTTCTTATAGTTTGAGCTCGTATGTCAAATGAAACTTACATTGATTCTTAC
1 TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTT--
* * *
4125047 AATAATAATCATCATTCCTTTCATGATTAGGCAACCAAAACACATTTTCCTTATTGGGATACACG
64 -ATAATAATCTTCATTCTTTTCATGA-TAGGCAACCAAAACACATTCTCCTTATTGGGATACACG
* * *
4125112 ATATTAATGCTTTGAATTCATAAGAAAAGTTTTTTTCCCCACCCTTTTTCTTAAAATCAAAGTTT
127 ATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTCTCCACCGTTTTTCTTAAAATCAAAGTTT
* * * * *
4125177 ATACCTTAACTAAGACGAACATGAATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACGA
191 ATACCTTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCA
* * * * *
4125242 TAAACACGTTATATTTTTTGGGATGCACAATATTAACGCATTGGTTATGCAA-ATAAAGTTTTTC
256 TAAACATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGA-AAAGTTTTTC
* * * *
4125306 TTGCCACTTATTTCCATAAAGAAAAGTTCATTCATCAAGTAAA-ACAAAAA-TAGATTCTTGTAA
320 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAA-AAAATACAAAAACT-GATTCTTGTAA
* * * * *
4125369 TAATCTCCA--TTATTTTATGATTAGGTAGGCAAAACA-----TGCT--T--GGATG-AATGATA
383 TAATCTCCACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAA-GATA
* *
4125422 TTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCA
447 TTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCA
4125461 TGATATTCCT
Statistics
Matches: 4075, Mismatches: 579, Indels: 187
0.84 0.12 0.04
Matches are distributed among these distances:
596 4 0.00
597 366 0.09
598 20 0.00
599 7 0.00
600 330 0.08
601 201 0.05
602 81 0.02
603 2 0.00
604 4 0.00
605 34 0.01
606 12 0.00
607 1 0.00
608 1 0.00
609 6 0.00
610 69 0.02
611 102 0.03
612 332 0.08
613 1106 0.27
614 436 0.11
615 606 0.15
616 347 0.09
617 8 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (611 bp):
TTCTTGCCACGATCTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTAT
AATAATCTTCATTCTTTTCATGATAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATAT
TAATGCTTTGATTTCATAAGAAAAGTTTTTTCTCCACCGTTTTTCTTAAAATCAAAGTTTATACC
TTAATTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
ATGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCA
CTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAAAATACAAAAACTGATTCTTGTAATAATCTCC
ACTTTTTTTTCTGATTAGGCAGCCAAAACACGCTCTCCTCATCGGGATGCAAGATATTGAAGCTT
TGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAG
AGACAAAGATGAATTCTCATAATCATCTCCAAAACACATTCTATTCAATGGGATACATGATATTG
ATGTTTTGATTATATAAGAAAAGCTT
Found at i:4126319 original size:612 final size:611
Alignment explanation
Indices: 4125416--4128974 Score: 2344
Period size: 612 Copynumber: 5.7 Consensus size: 611
4125406 GCTTGGATGA
* * ** * * *
4125416 ATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCATGATATTCCTTACAATTTGA
1 ATGATATTGATGTTTTGATTAT-ATAAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGA
* * * *
4125481 GTTTGTATGTCAAATGAATCAAATAGGGATTCATATAATAATCTTCATTCTTTTCATGTTTAGGC
65 GATTGTATGTCAAATGAATCAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * *
4125546 AACCAAAACACATTCTCCTTTTTGGGATACACAAAATTAATGCATTGATTTCATAAGTAATGTTT
130 AACCAAAACACATTCTCCTTATTAGGATACACAAAATTAATGCTTTGATTTCATAAGAAAAG-TT
* * * * *** * *
4125611 TTTTTCTCCATCGTTTTCCTTAAAATCAATGTTTATTCCTTAACTTTGACAAAAATGGATTTACG
194 TTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGAAACAAACATGGATTTATG
* * * ** *
4125676 CAATAATCTCCATTCCTTCAACGATTAGGCATGATAAACACAATATCTTATTTGGGATGCACTAT
259 CAATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTCTTTGGGATGCACTAT
4125741 ATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCATT
324 ATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCATT
* * * *
4125806 CGTCAAATAAAACAAAAATAAATTCTTATAATAATCTCCACTATTTTGTGATTAGGTAGCCAAAA
389 CATCAAATAAGACAAAAATAGATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAA
*
4125871 CACACACTCTTCATTAGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCC
454 CACACACTCTTCATTGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCC
* *
4125936 CCTACCTTTTTAAAATCAAAATTTGTCCCATAAAAGACACAAAGATGAATTATCATAATCATCCC
519 CCTACCTTTTTAAAATCAAAGTTTGTCCCATAAAAGACACAAAGATGAATTCTCATAATCATCCC
*
4126001 CCAAAAGACATTCAATTCATTGGGATAC
584 CCAAAACACATTCAATTCATTGGGATAC
*
4126029 AAGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAG
1 ATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAG
* * *
4126094 ATTGTATGTCAAATGAATCAAACAGGGATTTTTATATTAATCTT-AATCTTTTTCATGATTAGGC
66 ATTGTATGTCAAATGAATCAAACAGGGATTCTTATAATAATCTTCATTC-TTTTCATGATTAGGC
*
4126158 AACCAAAACACATTCTCCGTATTAGGATACACAAAATTAATGCTTTGATTTCATAAGAAAAGTTT
130 AACCAAAACACATTCTCCTTATTAGGATACACAAAATTAATGCTTTGATTTCATAAGAAAAG-TT
* * *
4126223 TTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTTTACCTTAAGTCAAACAAACATGGATTTATG
194 TTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGAAACAAACATGGATTTATG
* * *
4126288 CAATAATCTCTATTCTTTCAATGAGTAGGCATGATAAACACATTATCCTCTTTGGGATGCACTAT
259 CAATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTCTTTGGGATGCACTAT
* * * *
4126353 ATTGACACATTGGTTATGCAAGCAAAGTTTTTTCTTGCCACTTATTTTCGTAAAGCAAAGTTCAA
324 ATTGACGCATTGGTTATGCAAGTAAAG-TTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCAT
* * * * *
4126418 TCATCAAATATGACAAAAATAGATTCTTCTAATAATCTCAATTACTTTGTGATTAAGTAGCC--A
388 TCATCAAATAAGACAAAAATAGATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAA
* * * * **
4126481 A-A-ACA---TGC-TTGGATGAATGATATTAACGCTTTGATTTTCGTGAGAAATGCTTTTCTTT-
453 ACACACACTCTTCATTGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
* ** * * *** * * * * * *
4126539 CCATGATATTCCTTATAATTTGAGTTTGT-ACGTCAAATGA-ATCAAAGAGGGATTCTTATAATA
518 CCCT-ACCTT-TTTAAAATCAAAGTTTGTCCCAT-AAAAGACA-CAAAGATGAATTC---TCATA
** *
4126602 ATTTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTT-ATTCGGATAC
576 A---TCA-TC----C---------C--CCAAAACACATTC-AATTCATTGGGATAC
* *** ** * **** * * *
4126657 ACGATATT-A-G-GCAG-CCA-A-AACACGCTCTCTTTTTTGGGATACATGATATTGATGCTT-T
1 ATGATATTGATGTTTTGATTATATAAGAAAAGCT-TTTCTT--G--CCATGATA-T--TCCTTAT
* * * * * ** * ** * * *
4126715 GATTTTCGCAGGAACTGGTTTTTTTTCCACTACCT-TTTAAAATCAAAGTTTGCCCCTTAAAAGA
58 -AATTT-G-A-G-A----TTGTATGT-CA--A-ATGAATCAAA-CAGGGATT----CTTATAATA
*** ** * * * * * * * *
4126779 GA-CAAAGATGGATTCTCATAATGA-TC-TCCAAAAACACATTAT-TTTCATTAGGAT--GC---
105 -ATC-TTCAT-TCTTTTCATGATTAGGCAACC-AAAACACATTCTCCTT-ATTAGGATACACAAA
* * ** * * * ***
4126835 A-TGATGTTTTGATTAT-ATAAG-AAAGGCTTTTCCAGCCA-CGATCTTT-CTTAAAATTTGAGT
165 ATTAATGCTTTGATT-TCATAAGAAAAGTTTTTTTC-TCCACCG-T-TTTCCTTAGAATCAAAGT
* ** * * * *
4126895 TCATATGTCAAATGAAACAAACATGGATTCTTAT--AATAATCTTCATTCTTTTC-ATGATTAGG
226 TTATACCTTAACTGAAACAAACATGGA-T-TTATGCAATAATCTCCATTC-TTTCAATGAGTAGG
** * * * * * * * *
4126957 CAACCA-AAACAC-AT-TCTCCATATTGGGATACA-TAATATTAATGCTTTGATT-T-CATAAGA
288 C-ATGATAAACACGTTATCTTC-T-TTGGGATGCACT-ATATTGACGCATTGGTTATGC--AAGT
* * * * * * * * * *
4127016 AAAGTTTTT-TTTCTCAACCGT-TTTCCTTAGAATCAAAGTT--TTACCTTAACTGAGACAAACA
347 AAAGTTTTTCTTGC-C-A-CTTATTTTCATA-AAGCAAAGTTCATT-CATCAAATAAGACAAAAA
* * * ** * * * * *
4127077 TGGA-T-TTATGCAATAATCTTCATTCTTTCAATGAGTGGGCATG--ATAAACACATTA-TCGTC
407 TAGATTCTTAT--AATAATCTCCATTATTT-TGTGATTAGGTA-GCCA-AAACACA-CACTCTTC
* * * * * * * *
4127137 TTTGGGATGCACT-ATATTGACGCATTGGTTAT-GCAAGTAAA-GTTTTTCTTGCCACTTA--TT
466 ATT-GGATGCA-TGATATTGATGCTTTGATTTTCGCAAG-AAATGCTTTTCTTTCC-CCTACCTT
* * * ** * * * *
4127197 CTCATAAAGCAAAGTTCAATCATCA-AATAAGACA-AAA-AT-AGATTCTTATAATAAT--CTCA
527 TTTA-AAATCAAAGTT-TGTC-CCATAA-AAGACACAAAGATGA-ATTCTCATAATCATCCCCCA
* * ** *
4127256 ATTATTTTGTGATTA-AGTAGCCAAAACATGCTTGGATGA-
587 A--A-------A-CACA-T--TCAATTCAT--TGGGAT-AC
* * * * * * **
4127295 ATGATATTAATGCTTTGATTTTCGTGAGAAATGCTTTTCTTTACATGATATTCCTTATAATTTGA
1 ATGATATTGATGTTTTGATTAT-ATAAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGA
* * * *
4127360 GTTTGCACGTCAAATGAATCAAAGAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
65 GATTGTATGTCAAATGAATCAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * * *
4127425 AACCAAAACACATTCTCCTTATTCGGATATACGATATTAAAGCTTTGATTTCATAAGTAAAGCTT
130 AACCAAAACACATTCTCCTTATTAGGATACACAAAATTAATGCTTTGATTTCATAAGAAAAGTTT
* *** *
4127490 TTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACATGGATTTACGC
195 TTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGAAACAAACATGGATTTATGC
* * * *
4127555 AATAATCTCCATTCTTTCAGTGATTAGGCATGACAAACATGTTATCTTCTTTGGGATGCACTATA
260 AATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTCTTTGGGATGCACTATA
* *
4127620 TTCACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCATAAAGCAAAGTTCATTC
325 TTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCATTC
* * * *
4127685 ATCAAACAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAAA
390 ATCAAATAAGACAAAAATAGATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAAC
* * * * *
4127750 ACACTCTCTTTATTAGGATGCATGATATTGATGCTTTGATTTTCGCAACAAATGTTTTTCCTTCC
455 ACACACTCTTCATT-GGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCC
** * * * * * * *
4127815 ATTACCTTTTTGAAAGCAAAATTTGTCCCATAAAGGAGACAAAGATGAATTCTCAAAATCATCTC
519 CCTACCTTTTTAAAATCAAAGTTTGTCCCATAAAAGACACAAAGATGAATTCTCATAATCATCCC
* **
4127880 CAAAAACACATTTTATTCATTGGGATAC
584 CCAAAACACATTCAATTCATTGGGATAC
* * * *
4127908 ATGACATTTATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCA-CA-ATTATCTGTATAATTTG
1 ATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATATT-CCT-TATAATTTG
* * ** ** *
4127971 AGATCGTATGTCAATTGAAAAAAACATTGATTCTTATAATAATCTTCATTCTTTTAATGATGT-G
64 AGATTGTATGTCAAATGAATCAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGAT-TAG
* *** * * * * * * * *
4128035 GTAGGGAAAACGCACTCTCCATATT-GCGATACACGATATTAATGCTTTGGTTTTATAA-CAAA-
128 GCAACCAAAACACATTCTCCTTATTAG-GATACACAAAATTAATGCTTTGATTTCATAAGAAAAG
*
4128097 TTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACT-AAGACAAACATGGATTT
192 TTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGAA-ACAAACATGGATTT
* ** *** * *
4128161 ATGTAATAATCTCCATTCTTTCAATG-GTTAGGCACCATAAATTTGTTACCTTTTTTGGGATGCA
256 ATGCAATAATCTCCATTCTTTCAATGAG-TAGGCATGATAAACACGTTATCTTCTTTGGGATGCA
* * * * * * * *
4128225 CAAT-TCTGACACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAACAAAGC
320 CTATAT-TGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGT
** * * * * * *
4128289 TCATTCATCAAATATTACAAAAATGGATTTTTGTCATAATCTCCACTACTTTTGTGATTAGGCAG
384 TCATTCATCAAATAAGACAAAAATAGATTCTTATAATAATCTCCATTA-TTTTGTGATTAGGTAG
* * * * * * *
4128354 CCAAAACACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCACAGGAACTGGTTT
448 CCAAAACACACACTCTTCATT-GGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTT
* * * * * *
4128419 TCTTTCCACTACC-TTTTAAAATCAAAGTATGCCCCCTTAAAAGAGACAAAGATGGATTCTCATA
512 TCTTTCCCCTACCTTTTTAAAATCAAAGTTTG-TCCCATAAAAGACACAAAGATGAATTCTCATA
* * * ** * * *
4128483 ATGATCTCCAAAAACACATTCTTTTCACTAGGATGC
576 ATCATCCCCCAAAACACATTCAATTCATTGGGATAC
* * * * * *
4128519 ATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCCTGCCACGATCTTTCTTAAAATATGAG
1 ATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAG
* * * * * *
4128584 -TTCGTATGTAAAATGAAACAAACATGGATCCTTATAATAATCTTCATTCTTTTCTTGATTAGGG
66 ATT-GTATGTCAAATGAATCAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4128648 AATCAAAACACATTCTCCTTATTGGGATACA-AAATTTTAATGCTTTGATTTCATAAGAAAAGTT
130 AACCAAAACACATTCTCCTTATTAGGATACACAAA-ATTAATGCTTTGATTTCATAAGAAAAG-T
* * * * *
4128712 TTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTTTACCTTAACTGAGACAAATAAGGATTTAT
193 TTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGAAACAAACATGGATTTAT
* * * * *
4128777 GAAATAATCTCCATTCTTT-AAGAGAGTGGGCATGATAAAGACGTTATCCTCTTTGGGATGCACT
258 GCAATAATCTCCATTCTTTCAA-TGAGTAGGCATGATAAACACGTTATCTTCTTTGGGATGCACT
* *
4128841 ATATTGACGCATTGGTTATGCAAGTAAAGCTTTTCTTGCCACTTTTTTTCATAAAGCAAAGTTCA
322 ATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCA
* * *
4128906 ATCATCAAATAAGACAAAAATAGATTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAA
387 TTCATCAAATAAGACAAAAATAGATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAA
4128971 AACA
452 AACA
4128975 TGCTTGGATG
Statistics
Matches: 2236, Mismatches: 513, Indels: 394
0.71 0.16 0.13
Matches are distributed among these distances:
604 3 0.00
605 50 0.02
606 29 0.01
609 9 0.00
610 224 0.10
611 292 0.13
612 421 0.19
613 159 0.07
614 197 0.09
615 7 0.00
617 3 0.00
618 2 0.00
619 9 0.00
620 22 0.01
621 12 0.01
622 6 0.00
623 14 0.01
624 71 0.03
625 94 0.04
626 124 0.06
627 32 0.01
628 36 0.02
629 6 0.00
630 8 0.00
631 1 0.00
632 1 0.00
633 3 0.00
634 4 0.00
635 1 0.00
636 4 0.00
637 8 0.00
638 28 0.01
639 24 0.01
640 137 0.06
641 50 0.02
642 15 0.01
643 2 0.00
644 6 0.00
645 11 0.00
646 10 0.00
647 24 0.01
648 24 0.01
649 19 0.01
650 29 0.01
651 5 0.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (611 bp):
ATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAG
ATTGTATGTCAAATGAATCAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCA
ACCAAAACACATTCTCCTTATTAGGATACACAAAATTAATGCTTTGATTTCATAAGAAAAGTTTT
TTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGAAACAAACATGGATTTATGCA
ATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTCTTTGGGATGCACTATAT
TGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCATTCA
TCAAATAAGACAAAAATAGATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACA
CACACTCTTCATTGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCCC
TACCTTTTTAAAATCAAAGTTTGTCCCATAAAAGACACAAAGATGAATTCTCATAATCATCCCCC
AAAACACATTCAATTCATTGGGATAC
Found at i:4126679 original size:42 final size:42
Alignment explanation
Indices: 4126620--4126706 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
4126610 TCTTTTCATG
*
4126620 ATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACGAT
1 ATTAGGCAACCAAAACACACTCTCCTTATTCGGATACACGAT
* * * * * *
4126662 ATTAGGCAGCCAAAACACGCTCTCTTTTTTGGGATACATGAT
1 ATTAGGCAACCAAAACACACTCTCCTTATTCGGATACACGAT
4126704 ATT
1 ATT
4126707 GATGCTTTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
ATTAGGCAACCAAAACACACTCTCCTTATTCGGATACACGAT
Found at i:4127733 original size:467 final size:467
Alignment explanation
Indices: 4126901--4127748 Score: 1383
Period size: 467 Copynumber: 1.8 Consensus size: 467
4126891 GAGTTCATAT
*
4126901 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAA
1 GTCAAATGAAACAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAA
* * * *
4126966 CACATTCTCCATATTGGGATACATAATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTC
66 CACATTCTCCATATTCGGATACACAATATTAAAGCTTTGATTTCATAAGAAAAGTCTTTTTTCTC
*
4127031 AACCGTTTTCCTTAGAATCAAAGTTTTACCTTAACTGAGACAAACATGGATTTATGCAATAATCT
131 AACCGTTTTCCTTAGAATCAAAGTTTTACCTTAACTGAGACAAACATGGATTTACGCAATAATCT
* * * *
4127096 TCATTCTTTCAATGAGTGGGCATGATAAACACATTATCGTCTTTGGGATGCACTATATTGACGCA
196 CCATTCTTTCAATGAGTAGGCATGACAAACACATTATCGTCTTTGGGATGCACTATATTCACGCA
*
4127161 TTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTCTCATAAAGCAAAGTTCAATCATCAAATA
261 TTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTCTCATAAAGCAAAGTTCAATCATCAAACA
*
4127226 AGACAAAAATAGATTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGG
326 AAACAAAAATAGATTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGG
4127291 ATGAATGATATTAATGCTTTGATTTTCGTGAGAAATGCTTTTCTTTACATGATATTCCTTATAAT
391 ATGAATGATATTAATGCTTTGATTTTCGTGAGAAATGCTTTTCTTTACATGATATTCCTTATAAT
4127356 TTGAGTTTGCAC
456 TTGAGTTTGCAC
* *
4127368 GTCAAATGAATCAAAGAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAA
1 GTCAAATGAAACAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAA
* * * *
4127433 CACATTCTCCTTATTCGGATATACGATATTAAAGCTTTGATTTCATAAGTAAAG-CTTTTTTCTC
66 CACATTCTCCATATTCGGATACACAATATTAAAGCTTTGATTTCATAAGAAAAGTCTTTTTTCTC
* * **
4127497 CACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACATGGATTTACGCAATAATC
131 AACCGTTTTCCTTAGAATCAAAGTTT-TACCTTAACTGAGACAAACATGGATTTACGCAATAATC
* * ** *
4127562 TCCATTCTTTCAGTGATTAGGCATGACAAACATGTTATCTTCTTTGGGATGCACTATATTCACGC
195 TCCATTCTTTCAATGAGTAGGCATGACAAACACATTATCGTCTTTGGGATGCACTATATTCACGC
* * *
4127627 ATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCATAAAGCAAAGTTCATTCATCAAAC
260 ATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTCTCATAAAGCAAAGTTCAATCATCAAAC
* * *
4127692 AAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAA
325 AAAACAAAAATAGATTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAA
4127749 AACACTCTCT
Statistics
Matches: 347, Mismatches: 33, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
466 33 0.10
467 314 0.90
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (467 bp):
GTCAAATGAAACAAACAGGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAA
CACATTCTCCATATTCGGATACACAATATTAAAGCTTTGATTTCATAAGAAAAGTCTTTTTTCTC
AACCGTTTTCCTTAGAATCAAAGTTTTACCTTAACTGAGACAAACATGGATTTACGCAATAATCT
CCATTCTTTCAATGAGTAGGCATGACAAACACATTATCGTCTTTGGGATGCACTATATTCACGCA
TTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTCTCATAAAGCAAAGTTCAATCATCAAACA
AAACAAAAATAGATTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGG
ATGAATGATATTAATGCTTTGATTTTCGTGAGAAATGCTTTTCTTTACATGATATTCCTTATAAT
TTGAGTTTGCAC
Found at i:4130557 original size:607 final size:607
Alignment explanation
Indices: 4129036--4131875 Score: 3529
Period size: 610 Copynumber: 4.7 Consensus size: 607
4129026 TTCCATGATA
* * ** * * * *
4129036 TTCCTTATAATTTGAGTTTGTACGTCAAATGAATCAAAGAGGGATTCTTATAATAATCTTCATTC
1 TTCCTTAAAATTTGAGATCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
* *
4129101 TTTTCATGATTAGGCAACCAAAACACATTCTCCTTATAT-GAATACACGATATTAATGCTTTGAT
66 TTTTCATGATTAGGCAACCAAAACACATTCTCCATAT-TGGGATACACGATATTAATGCTTTGAT
* * * **
4129165 TTCATAAGTAAAGTTTTTTTTCTCCACCATTTTCTTTAGAGTCAAAGTTTATACCTTAACTTTGA
130 TTCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGA
* * * * *
4129230 CAAACATGGTTTTACGCAATAATCTCCATTCTTTCAAGGATTAGGCATGACAAACACATTATCTT
195 CAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTT
*
4129295 CTTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCG
260 CTTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCG
* *
4129360 TAAAGCAAAGTTCATTCATCAAACAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGT
325 TAAAGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGT
* * * * * * *
4129425 AAGTAGGTAGCCAAAAAACACTCTCTTTATTAGGATGCATGATATTGATGCTTTGATTTTCGCAA
390 GATTAGGTAGCCAAAACACATTCTCATCATTAGGATGCATCATATTGATGCTTTGATTTTCGCAA
* * * * *
4129490 GAAATGCTTTTCCTTCCACTACCTTTTTGAAAGCAAAATTTGTCCCATAAAAGAAACAAAGATGA
455 GAAATGGTTTTCCTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCATAAAAGAAACAAAGATGA
* *
4129555 ATTCTCAAAATCATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGCTTTGATT
520 ATTCTCAAAATCATCTCCAAAAACACATTTTATTCATTAGGATGCATG--A-TG-T--TTTGATT
**
4129620 ATATAAGAAAAGCTTTTCTTGCCACAGTT
579 ATATAAGAAAAGCTTTTCCAGCCACAGTT
* * * * *
4129649 TTCCTTATAGTTTGAGATCGTATGTCAAATGAAATAAACATTGATTCTTATAATAATCTTCATTC
1 TTCCTTAAAATTTGAGATCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
* * * * * * * * *
4129714 TTTTAATGATGT-GGTAGCGAAAGCGCACTCTCCATATTGCGATACACGATATTAATGCTTTGGT
66 TTTTCATGAT-TAGGCAACCAAAACACATTCTCCATATTGGGATACACGATATTAATGCTTTGAT
* * *
4129778 TTTATAA-CAAA--TTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGA
130 TTCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGA
** *** *
4129840 CAAACATGGATTTAC-CTAATAATCTCCATTCTTTCAATG-GTTAGGCACCATAAATTTGTTATA
195 CAAACATGGATTTACGC-AATAATCTCCATTCTTTCAATGAG-TAGGCATGATAAACACGTTATC
* * * * *
4129903 TTTTTTGGGATGCACAAT-TCTGACACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTT
258 TTCTTTGGGATGCACTATAT-TGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTT
* * * ** * * *
4129967 CCTTAAAGCAAAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAATAATCTCCACTACTT
322 TCGTAAAGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAATAATCTCCATTA-TT
* * * *
4130032 TTGTGATTAGGTAGCCAAAACACGTTCTCATCCTTGGGATGCATCATATGGATGCTTTGATTTTC
386 TTGTGATTAGGTAGCCAAAACACATTCTCATCATTAGGATGCATCATATTGATGCTTTGATTTTC
* * ** * * *
4130097 GCAGGAACTGGTTTTTTTTCCATTA-CTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACAAAG
451 GCAAGAAATGGTTTTCCTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCATAAAAGAAACAAAG
* *
4130161 ATGGATTCTCACAA-CGATCTCCAAAAACACATTCTT-TTCATTAGGATGCATGATGTTTTGATT
516 ATGAATTCTCAAAATC-ATCTCCAAAAACACATT-TTATTCATTAGGATGCATGATGTTTTGATT
4130224 ATATAAGAAAAGCTTTTCCAGCCAC-GATCT
579 ATATAAGAAAAGCTTTTCCAGCCACAG-T-T
**
4130254 TT-CTTAAAATTTGATTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
1 TTCCTTAAAATTTGAGATCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
* * *
4130318 TTTTCATGATTAGGCAACCAAAACACATTCTCTATATTGGGATACACAATATTAACGCTTTGATT
66 TTTTCATGATTAGGCAACCAAAACACATTCTCCATATTGGGATACACGATATTAATGCTTTGATT
* * * * *
4130383 TCATAAGAAAAGTTTTTTTTATCGACCGTTTTCCTTAGAATCAAAGTTTATACCTTAATTGAGAC
131 TCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGAC
* * *
4130448 AAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAGTGGGCATGATAAACACGTTATCCTC
196 AAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTC
* *
4130513 TTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTAGTTATTTTCGT
261 TTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCGT
*
4130578 AAAGCAAAGTTCATTCGTCAAACAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGTG
326 AAAGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGTG
* * *
4130643 ATTAGGTAGCCAAAACACATTCTCTTTATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAG
391 ATTAGGTAGCCAAAACACATTCTCATCATTAGGATGCATCATATTGATGCTTTGATTTTCGCAAG
* * **
4130708 AAATGGTTTTCCTTCCACTACCTGTTTGAAATCAAAGTTTATCCCATAAAAGAAACAAAGATGAA
456 AAATGGTTTTCCTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCATAAAAGAAACAAAGATGAA
* *
4130773 TTCTCAAAATCATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTA
521 TTCTCAAAATCATCTCCAAAAACACATTTTATTCATTAGG----ATG-CA-TGATGTTTTGATTA
**
4130838 TATAAGAAAAGCTTTTCTTGCCACAGTT
580 TATAAGAAAAGCTTTTCCAGCCACAGTT
* * * * *
4130866 TTCCTTATAGTTTGAGATCGTATGTCAAATGAAATAAACATTGATTCTTATAATAATCTTCATTC
1 TTCCTTAAAATTTGAGATCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
* * * * * * * * * *
4130931 TTTTAATGATGT-GGTAGCGAAAGCGCACTCTCCATATTGCGATACACGATATTAATGTTTTGGT
66 TTTTCATGAT-TAGGCAACCAAAACACATTCTCCATATTGGGATACACGATATTAATGCTTTGAT
* * * *
4130995 TTTAT-A-ACAA-TTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTTTAACTTAACTAAGA
130 TTCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGA
* * ** *** *
4131057 CAAACAAGGATTTACGTAATAATCTCCATTCTTTCAATG-GTTAGGCACCATAAATTTGTTATAT
195 CAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAG-TAGGCATGATAAACACGTTATCT
* * * * * *
4131121 TTTTTGGGATGCACAAT-TCTGACACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTC
259 TCTTTGGGATGCACTATAT-TGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTT
* * ** * * * *
4131185 CTTAAAGCAAAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTT
323 CGTAAAGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAATAATCTCCATTA-TTT
* * *
4131250 TGTGATTAGGTAGCCAAAACACGTTCTCATCCTTGGGATGCATCATATTGATGCTTTGATTTTCG
387 TGTGATTAGGTAGCCAAAACACATTCTCATCATTAGGATGCATCATATTGATGCTTTGATTTTCG
* ** * *
4131315 CAAGAACTGGTTTTTTTTTCCACTACC-TTTTAAAATGAAAGTTTGCCCCTTAAAA-AAGACAAA
452 CAAGAAATGG-TTTTCCTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCATAAAAGAA-ACAAA
* * *
4131378 GATGGATTCTCACAATGATCTCCAAAAACACATTCTT-TTCATTAGGATGCATGATGTTTTGATT
515 GATGAATTCTCAAAATCATCTCCAAAAACACATT-TTATTCATTAGGATGCATGATGTTTTGATT
4131442 ATATAAGAAAAGCTTTTCCAGCCAC-GATCT
579 ATATAAGAAAAGCTTTTCCAGCCACAG-T-T
*
4131472 TT-CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
1 TTCCTTAAAATTTGAGATCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
**
4131536 TTTTCATGATTAGGCAACCAAAACACATTCTCCATATTGGGATACATAATATTAATGCTTTGATT
66 TTTTCATGATTAGGCAACCAAAACACATTCTCCATATTGGGATACACGATATTAATGCTTTGATT
* * * *
4131601 TCATAAGAAAAG-TTTTTTTCTCGACCGTTTTCCTTAGAATCAAAGTTTTTACCTTAACTGAGAC
131 TCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGAC
* * *
4131665 AAACTTGGATTTATGCAATAATCTCCATTCTTTCAATGAGTGGGCATGATAAACACGTTATCTTC
196 AAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTC
* * *
4131730 TTTGGGATGCACTATATTGATGCATTGGTTATGCATGTAAAGTTTTTCTTGCCACTTATTTTCAT
261 TTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCGT
* * * * *
4131795 AAAGCAAAGTTTCA-TCATCAAATAAGACAAAAATAGATTCTTATAATAATCTCAATTATTTTGA
326 AAAGCAAAG-TTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGT
*
4131859 GA-TAAGTAGCCAAAACA
390 GATTAGGTAGCCAAAACA
4131876 TGCTTGGATG
Statistics
Matches: 1889, Mismatches: 294, Indels: 96
0.83 0.13 0.04
Matches are distributed among these distances:
603 2 0.00
604 144 0.08
605 167 0.09
606 95 0.05
607 479 0.25
608 10 0.01
609 5 0.00
610 483 0.26
611 220 0.12
612 25 0.01
613 256 0.14
614 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (607 bp):
TTCCTTAAAATTTGAGATCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC
TTTTCATGATTAGGCAACCAAAACACATTCTCCATATTGGGATACACGATATTAATGCTTTGATT
TCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGAC
AAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGATAAACACGTTATCTTC
TTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCGT
AAAGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGTG
ATTAGGTAGCCAAAACACATTCTCATCATTAGGATGCATCATATTGATGCTTTGATTTTCGCAAG
AAATGGTTTTCCTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCATAAAAGAAACAAAGATGAA
TTCTCAAAATCATCTCCAAAAACACATTTTATTCATTAGGATGCATGATGTTTTGATTATATAAG
AAAAGCTTTTCCAGCCACAGTT
Found at i:4133265 original size:611 final size:609
Alignment explanation
Indices: 4131881--4133537 Score: 2100
Period size: 611 Copynumber: 2.7 Consensus size: 609
4131871 AAACATGCTT
* * * * * * * * * *
4131881 GGATGAATGATATTAATGCTTTGATTTTCGTGAGAAACGCTTTTCTTTCCATGATATTCCTTATA
1 GGATGCATGATATTGATGTTTTGATTAT-ATAAGAAAAGCTTTTCTTGCCACGAT-TTTCTTATA
* ** * * * *
4131946 ATTTGAGTTTGTACATCAAATGAATCAAAGAGGGATTCTTATAATAATTTTCATTCTTTTCATGA
64 ATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGA
* * * *
4132011 TTAGGCAACTAAAACACATTCTCCTTATTCGGATACACGAAATTAATGCTTTGATTTCATAAGTA
129 TTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAA-CA
* * * **
4132076 AAGTTTTTTTTCTCCACCGTTTTCTTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACATGGA
193 AA-ATTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAACATGGA
*
4132141 TTTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGACAAACACGTTATCTTCTTTGGGATG
257 TTTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTTTGGGATG
* *
4132206 CACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCGTAAAGCAAAG
322 CACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAG
* * ** * *
4132271 TTCATTCGTCAAACAAAACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGGGTTTAGGTAG
387 TTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTCCATACTTTTGGGATTAGGCAG
* * *
4132336 CCAAAACACATTCCCTTTATTAGGATGCATGATATCGATGCTTTGATTTTCGCAAGAAATGGTTT
452 CCAAAACACACTCCCTTCATTAGGATGCATGATATCGATGCTTTGATTTTCACAAGAAATGGTTT
* * *
4132401 TCCTTCCACTACCTTTCTGAAATCAAAGTTATCCCATAAAAGAGATAAAGATGAATTCTCAAAAT
517 TCCTTCCACTACCTTTCTAAAATCAAAATTATCCCATAAAAGAGACAAAGATGAATTCTCAAAAT
* *
4132466 CATCTCCAAAAACACATTATATTCATTG
582 CATCTCCAAAAACACATTATATTCACTA
* * * *
4132494 GGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCCTATAG
1 GGATGCATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATAA
* * * * *
4132559 CTTGAGATCGTATGTCAAATGAAATAAACATTGATTCTTATAATAATCTTCATTCTTTTAATGAT
65 TTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGAT
* * * * * * * *
4132624 GT-GGTAGCGAAAACGCACTCTCCATATTGGGATGCACGATATTAATGCTTTGGTCTT-ATAACA
130 -TAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGAT-TTCATAACA
* *
4132687 AAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAACGTGGAT
193 AAATTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAACATGGAT
* ** *** *
4132752 TTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTCTTTTGGATGC
258 TTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTTTGGGATGC
* * * * * * *
4132817 ACAAT-TCTGGCACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAG
323 ACTATAT-TGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAG
* ** * * *
4132881 CTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTAGGCA
387 TTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTCCA-TACTTTTGGGATTAGGCA
* * * * * *
4132946 GCCAAAACACACTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCACAGGAACTGGTT
451 GCCAAAACACACTCCCTTCATTAGGATGCATGATATCGATGCTTTGATTTTCACAAGAAATGGTT
* * *
4133011 TTCTTTCCACTACCTTT-TAAAATCAAAATT-TGCCCATTAAAAGAGACAAAGATGGATTCTCAT
516 TTCCTTCCACTACCTTTCTAAAATCAAAATTAT-CCCA-TAAAAGAGACAAAGATGAATTCTCAA
* * *
4133074 AATGATCTCCAAAAACACATTCTTTTCACTA
579 AATCATCTCCAAAAACACATTATATTCACTA
* *
4133105 GGATGCATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCCTGCCACGATCTTTCTTAAAA
1 GGATGCATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGAT-TTTCTTATAA
* * * *
4133170 TTTGAGTTCGTATGTAAAATGAAACAAACATGGATTCTTACAATAACCTTCATTCTTTTCTTGAT
65 TTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGAT
* *
4133235 TAGGCAACCAAAACACATTCTCCTTATTGGGATACACAATATTAATGCTTTGATTTCATAAGAAA
130 TAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAACAAA
* * **
4133300 AGTTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTTTACCTTCACTGGGACAAACATGGAT
195 A--TTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAACATGGAT
* * * * *
4133365 TTATGCAATAATCTCCATTTTTTCAATGAGTAGGCATGATAAACACGTTAACCTCTTTGGGATGC
258 TTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTTTGGGATGC
4133430 ACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGT
323 ACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGT
* * * * * *
4133495 TCAATCATCAAATAAGACAAAAACAGATTCTTATAATAATCTC
388 TCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTC
4133538 ATTTATTTTG
Statistics
Matches: 879, Mismatches: 152, Indels: 26
0.83 0.14 0.02
Matches are distributed among these distances:
609 2 0.00
610 224 0.25
611 301 0.34
612 127 0.14
613 224 0.25
614 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (609 bp):
GGATGCATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTATAAT
TTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATT
AGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAACAAAA
TTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAACATGGATTTA
CGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTTTGGGATGCACT
ATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCA
TTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTCCATACTTTTGGGATTAGGCAGCCAA
AACACACTCCCTTCATTAGGATGCATGATATCGATGCTTTGATTTTCACAAGAAATGGTTTTCCT
TCCACTACCTTTCTAAAATCAAAATTATCCCATAAAAGAGACAAAGATGAATTCTCAAAATCATC
TCCAAAAACACATTATATTCACTA
Found at i:4133778 original size:468 final size:468
Alignment explanation
Indices: 4133163--4134034 Score: 1323
Period size: 468 Copynumber: 1.9 Consensus size: 468
4133153 CACGATCTTT
* * *
4133163 CTTAAAATTTGAGTTCGTATGTAAAATGAAACAAACATGGATTCTTACAATAACCTTCATTCTTT
1 CTTAAAATTTGAGTTCGTACGTAAAATGAAACAAACAGGGATTCTTACAAAAACCTTCATTCTTT
* * *
4133228 TCTTGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACAATATTAATGCTTTGATTTCA
66 TCATGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACAATATTAATGCTTCGATTTCA
* * *
4133293 TAAGAAAAGTTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTTTACCTTCACTGGGACAAA
131 TAAGAAAAGTCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGGGACAAA
* * *
4133358 CATGGATTTATGCAATAATCTCCATTTTTTCAATGAGTAGGCATGATAAACACGTTAACCTCTTT
196 CATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGACAAACACGTTAACCTCTTT
4133423 GGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAA
261 GGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAA
* * * * *
4133488 GCAAAGTTCAATCATCAAATAAGACAAAAACAGATTCTTATAATAATCT-CATTTATTTTGTTAT
326 GCAAAGTTCAATCATCAAACAAAACAAAAAAAGATTCTTATAACAATCTCCA-TTATTTTGTGAT
*
4133552 TAATTAGCCAAAACATGCTTGGATGAATGATATTAACGCTTTGATTTTTGTGAGAACTGCTTTTC
390 TAAGTAGCCAAAACATGCTTGGATGAATGATATTAACGCTTTGATTTTTGTGAGAACTGCTTTTC
4133617 TTTCCATGATATTC
455 TTTCCATGATATTC
* * * * ** * *
4133631 CTTATAATTTGAGTTTGTACGTCAAATGAATCAAAGGGGGATTCTTATAAAAATCTTCATTCTTT
1 CTTAAAATTTGAGTTCGTACGTAAAATGAAACAAACAGGGATTCTTACAAAAACCTTCATTCTTT
* *
4133696 TCATGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACGCGATATTAATGCTTCGATTTCA
66 TCATGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACAATATTAATGCTTCGATTTCA
* * **
4133761 TAAGTAAAGTCTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAA
131 TAAGAAAAGTCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGGGACAAA
* * * * *
4133826 CATGGATTTACGCAATAATCTCCATTCTTTCAGTGATTAGGCATGACAAACATGTTATCTTCTTT
196 CATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGACAAACACGTTAACCTCTTT
* *
4133891 GGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCGTAAA
261 GGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAA
* * ** *
4133956 GTAAAGTTCATTTGTCAAACAAAACAAAAAAAGATTCTTGTAACAATCTCCATTATTTTGTGATT
326 GCAAAGTTCAATCATCAAACAAAACAAAAAAAGATTCTTATAACAATCTCCATTATTTTGTGATT
*
4134021 AGGTAGCCAAAACA
391 AAGTAGCCAAAACA
4134035 CACTCTCTTC
Statistics
Matches: 358, Mismatches: 45, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
468 356 0.99
469 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (468 bp):
CTTAAAATTTGAGTTCGTACGTAAAATGAAACAAACAGGGATTCTTACAAAAACCTTCATTCTTT
TCATGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACAATATTAATGCTTCGATTTCA
TAAGAAAAGTCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTGGGACAAA
CATGGATTTACGCAATAATCTCCATTCTTTCAATGAGTAGGCATGACAAACACGTTAACCTCTTT
GGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAA
GCAAAGTTCAATCATCAAACAAAACAAAAAAAGATTCTTATAACAATCTCCATTATTTTGTGATT
AAGTAGCCAAAACATGCTTGGATGAATGATATTAACGCTTTGATTTTTGTGAGAACTGCTTTTCT
TTCCATGATATTC
Found at i:4135627 original size:607 final size:606
Alignment explanation
Indices: 4133631--4136461 Score: 3924
Period size: 607 Copynumber: 4.7 Consensus size: 606
4133621 CATGATATTC
* ** * * *** *
4133631 CTTATAATTTGAGTTTGTACGTCAAATGAATCAAAGGGGGATTCTTATAAAAATCTTCATTCTTT
1 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
* * * * * * * * ** *
4133696 TCATGAT-TAGGCAACCAAAACACATTCTCCTTATT-CGGATACGCGATATTAAT-GCTTCGATT
66 TAATGATGT-GGTAGCGAAAGCGCATTCTCCATATTGC-GATACACGATATTAATATTTTAG-TT
* * * * * * **
4133758 TCATAAGTAAAGTCTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGAC
128 TTATGA-CAAA-T-TTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGAC
* * ** * ** *
4133823 AAACATGGATTTACGCAATAATCTCCATTCTTTCAGTGATTAGGCATGACAAACATGTTATCTTC
190 AAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTT
* * * * *
4133888 TTTGGGATGCACTATAT-TGACG-CATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTC
255 TTTGGGATGCACAAT-TCTGA-GACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCC
* * * * * ** ** * *
4133951 GTAAAGTAAAGTTCATTTGTCAAACAAAACAAAAAAAGATTCTTGTAACAATCTCCATTA-TTTT
318 TTAAAGCAAAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTT
** * * * * *
4134015 GTGATTAGGTAGCCAAAACACACTCTCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGC
383 GTGATTAGGTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGC
* * ** * * * *
4134080 AAGAAAT-G-CTTTTCCTTCCACTACCTTTTTGAAATCAAAGTTTGTCCCATAAAAGAGACAAAG
448 AAGAACTAGTTTTTTTTTTCCACTACC-TTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAG
** * * ** * *
4134143 GCGAATTCTCAAAATCTTCTCCAAAAACACATT-TTATTCATTGGGATACATGATATTGATGTTT
512 ATGGATTCTCACAATGATCTCCAAAAACACATTCTT-TTCATTAGGATGC---ATA---ATGTTT
**
4134207 TGATTATATAAGAAAAGCTTTTCTTGCCAC-AGT-TTT
570 TGATTATATAAGAAAAGCTTTTCCAGCCACGA-TCTTT
* * * * * *
4134243 CCTTATAGTTTGAGATCGTATGTCAAATGAAATAAACATTGATTCTTATAATAATCTTCATTCTT
1 -CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTT
* * *
4134308 TTAATGATGTGGTAGCGAAAGCGCACTCTCCATATTGCGATACACGATATTAATGTTTTGGTTTT
65 TTAATGATGTGGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAGTTTT
* *
4134373 ATAAC-AATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTTTAACTTAACTAAGACAAACA
130 ATGACAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACAAACA
* *
4134437 TGGATTTACGTAATAATCTCCATTCTTTCAATGGTTAGGCACCATAAATTTGTTATATTTTTTGG
195 TGGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTTTTGG
*
4134502 GATGCACAATTCTGACACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
260 GATGCACAATTCTGAGACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
4134567 AAAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTA
325 AAAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTA
4134632 GGTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGCAAGAACT
390 GGTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGCAAGAACT
4134697 AGTTTTTTTTTTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATGGATTC
455 AGTTTTTTTTTTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATGGATTC
4134762 TCACAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATAATGTTTTGATTATATAAGAAA
520 TCACAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATAATGTTTTGATTATATAAGAAA
4134827 AGCTTTTCCAGCCACGATCTTT
585 AGCTTTTCCAGCCACGATCTTT
4134849 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
1 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
4134914 TAATGATGTGGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAGTTTTA
66 TAATGATGTGGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAGTTTTA
4134979 TGACAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACAAACAT
131 TGACAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACAAACAT
4135044 GGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTTTTGGG
196 GGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTTTTGGG
*
4135109 AAGCACAATTCTGAGACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCA
261 ATGCACAATTCTGAGACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCA
4135174 AAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTAG
326 AAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTAG
4135239 GTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGCAAGAACTA
391 GTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGCAAGAACTA
4135304 GTTTTTTTTTTTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATGGATTC
456 G-TTTTTTTTTTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATGGATTC
4135369 TCACAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATAATGTTTTGATTATATAAGAAA
520 TCACAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATAATGTTTTGATTATATAAGAAA
4135434 AGCTTTTCCAGCCACGATCTTT
585 AGCTTTTCCAGCCACGATCTTT
4135456 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
1 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
4135521 TAATGATGTGGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAGTTTTA
66 TAATGATGTGGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAGTTTTA
4135586 TGACAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACAAACAT
131 TGACAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACAAACAT
4135651 GGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTTTTGGG
196 GGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTTTTGGG
*
4135716 AAGCACAATTCTGAGACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCA
261 ATGCACAATTCTGAGACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCA
* *
4135781 AAGCTCATTTGTCAAATATTACAAAAATGGATTTTTGTAATAATCTCCACTACTTTTGTGATTAG
326 AAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTAG
* * *
4135846 GTAGCCAAAACACGTTCTCATCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAGGAACTA
391 GTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGCAAGAACTA
* *
4135911 G--TTTTTTTTCCACTACCTTTTAAAATCAAAATTTGCCCCTTAAAAGAGACAAAGATGGATTCT
456 GTTTTTTTTTTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATGGATTCT
* * *
4135974 CATAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATGATGTTTTGATTATATAAGAAAG
521 CACAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATAATGTTTTGATTATATAAGAAAA
4136039 GCTTTTCCAGCCACGATCTTT
586 GCTTTTCCAGCCACGATCTTT
4136060 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
1 CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
* * * * * * * ** **
4136125 TCATGAT-TAGGCAACCAAAACACATTCTCCATATTGGGATACATAATATTAATGCTTT-GATTT
66 TAATGATGT-GGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAG-TTT
* * * * * *
4136188 CATAAGA-AAAGTTTTTTTCTCGACCGTTTTCCTTAGAATCAAAGTTTTTACCTTAACTGAGACA
129 --TATGACAAA-TTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACA
* * * * * ** *** *
4136252 AACTTGGATTTATGCAATAATCTCCATTCTTTCAATGAGTGGGCATGATAAACACGTTATCTTCT
191 AACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTT
* * * * * *
4136317 TTGGGATGCACTATAT-TGATG-CATTGGTTATGCATGTAAAGTTTTTCTTGCCACTTATTTTCA
256 TTGGGATGCACAAT-TCTGA-GACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCT
* * ** * * * * * *
4136380 TAAAGCAAAGTTTCA-TCATCAAATAAGACAAAAATAGATTCTTATAATAATCTCAATTA-TTTT
319 TAAAGCAAAG-CTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTT
* *
4136443 GAGA-TAAGTAGCCAAAACA
383 GTGATTAGGTAGCCAAAACA
4136462 TGCTTGGATG
Statistics
Matches: 2042, Mismatches: 155, Indels: 51
0.91 0.07 0.02
Matches are distributed among these distances:
603 2 0.00
604 270 0.13
605 169 0.08
606 523 0.26
607 606 0.30
608 4 0.00
609 203 0.10
610 69 0.03
611 74 0.04
612 16 0.01
613 101 0.05
614 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (606 bp):
CTTAAAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
TAATGATGTGGTAGCGAAAGCGCATTCTCCATATTGCGATACACGATATTAATATTTTAGTTTTA
TGACAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATAACTTAACTAAGACAAACAT
GGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTTTTTGGG
ATGCACAATTCTGAGACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCA
AAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTGATTAG
GTAGCCAAAACACGTTCTCATCCTTGGGATACATCATATTGATGCTTTGATTTTCGCAAGAACTA
GTTTTTTTTTTCCACTACCTTTTAAAATCAAAGTTTGCCCCTTAAAAAAGACAAAGATGGATTCT
CACAATGATCTCCAAAAACACATTCTTTTCATTAGGATGCATAATGTTTTGATTATATAAGAAAA
GCTTTTCCAGCCACGATCTTT
Found at i:4137851 original size:611 final size:610
Alignment explanation
Indices: 4136525--4138123 Score: 2112
Period size: 611 Copynumber: 2.6 Consensus size: 610
4136515 CCATGATATC
* * * * * *
4136525 CCTTATAATTTGAGTTTGTACGTCAAATGAATCAAAGAGGGATTCTTATAATAATTTTCATTCTT
1 CCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTT
* *
4136590 TTCATGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACGAAATTAATGCTTTGATTTC
66 TTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTC
* * * * **
4136655 ATAAGTAAAGTTTTTTTTCTCCACCGTTTTCTTTAGAGTCAAAGTTTATACCTTAACTTTGACAA
131 ATAA-CAAA-ATTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAA
* *
4136720 ACATGGATTTACGCAATAATCTCCATTCTTTCAACGATTAGGCATGACAAACACGTTATCTTCTT
194 ACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTT
* *
4136785 TGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCGTAA
259 TGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAA
* * **
4136850 AGCAAAGTTCATTCGTCAAACAAAACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGGGAT
324 AGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTCCATACTTTTGGGAT
* * * *
4136915 TAGGTAGCCAAAACACATTCCCTTTATTAGGATGCATGATATCGATGCTTTGATTTTCGCAAGAA
389 TAGGCAGCCAAAACACACTCCCTTCATTAGGATGCATGATATCGATGCTTTGATTTTCACAAGAA
* * *
4136980 ATGGTTTTCCTTCCACTACCTTTCTGAAATCAAAGTTATCCCATAAAAGAGATAAAGATGAATTC
454 ATGGTTTTCCTTCCACTACCTTTCTAAAATCAAAATTATCCCATAAAAGAGACAAAGATGAATTC
* *
4137045 TCAAAATCATCTCCAAAAACACATTATATTCATTGGGATACATGATATTGATGTTTTGATTATAT
519 TCAAAATCATCTCCAAAAACACATTATATTCACTAGGATACATGATATTGATGTTTTGATTATAT
*
4137110 AAGAAAAGCTTTTCTTGCCACAATTTT
584 AAGAAAAGCTTTTCCTGCCACAATTTT
* ** * * *
4137137 CCCTATAGCTTGAGATCGTATGTCAAATGAAATAAACATTGATTCTTATAATAATCTTCATTCTT
1 CCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTT
* * * * * * * * *
4137202 TTAATGATGT-GGTAGCGAAAACGCACTCTCCATATTGGGATGCACGATATTAATGCTTTGGTCT
66 TTCATGAT-TAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGAT-T
*
4137266 T-ATAACAAAATTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAA
129 TCATAACAAAATTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAA
* * ** ***
4137330 ACGTGGATTTACGTAATAATCTCCATTCTTTCAATGATTAGGCACCATAAATTTGTTATCTTCTT
194 ACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTT
* * * * * * * *
4137395 TTGGATGCACAAT-TCTGGCACATTGGGTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTA
259 TGGGATGCACTATAT-TGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATA
* ** * * *
4137459 AAGCAAAGCTCATTCGTCAAATATTACAAAAATGGATTTTTGTAACAATCTCCACTACTTTTGTG
323 AAGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTCCA-TACTTTTGGG
* * * * * *
4137524 ATTAGGCAGCCAAAACACACTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTTACAGG
387 ATTAGGCAGCCAAAACACACTCCCTTCATTAGGATGCATGATATCGATGCTTTGATTTTCACAAG
* * *
4137589 AACTGGTTTTCTTTCCACTACCTTT-TAAAATCAAAATT-TGCCCATTAAAAGAGACAAAGATGG
452 AAATGGTTTTCCTTCCACTACCTTTCTAAAATCAAAATTAT-CCCA-TAAAAGAGACAAAGATGA
* * * * *
4137652 ATTCTCATAATGATCTCCAAAAACACATTCTTTTCACTAGGATGCATGATATTGATGTTTTGATT
515 ATTCTCAAAATCATCTCCAAAAACACATTATATTCACTAGGATACATGATATTGATGTTTTGATT
*
4137717 ATATAAGAAAAGCTTTTCCTGCCACGATCTTT
580 ATATAAGAAAAGCTTTTCCTGCCACAAT-TTT
* * *
4137749 -CTTAAAATTTGAGTTCGTATGTAAAATGAAACAAACATGGATTCTTATAATAACCTTCATTCTT
1 CCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTT
* *
4137813 TTCTTGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACAATATTAATGCTTTGATTTC
66 TTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTC
* * * **
4137878 ATAAGAAAAGTTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTTTACCTTCACTGGGACAA
131 ATAACAAAA--TTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAA
* * * * *
4137943 ACATGGATTTATGCAATAATCTCCATTTTTTCAATGAGTAGGCATGATAAACACGTTAACCTCTT
194 ACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTT
4138008 TGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAA
259 TGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAA
* * * * * *
4138073 AGCAAAGTTCAATCATCAAATAAGACAAAAACAGATTCTTATAATAATCTC
324 AGCAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTC
4138124 ATTTATTTTG
Statistics
Matches: 836, Mismatches: 139, Indels: 23
0.84 0.14 0.02
Matches are distributed among these distances:
609 2 0.00
610 223 0.27
611 300 0.36
612 109 0.13
613 201 0.24
614 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (610 bp):
CCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTT
TTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTC
ATAACAAAATTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAAC
ATGGATTTACGCAATAATCTCCATTCTTTCAATGATTAGGCATGATAAACACGTTATCTTCTTTG
GGATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAG
CAAAGTTCATTCGTCAAATAAAACAAAAATAGATTCTTGTAACAATCTCCATACTTTTGGGATTA
GGCAGCCAAAACACACTCCCTTCATTAGGATGCATGATATCGATGCTTTGATTTTCACAAGAAAT
GGTTTTCCTTCCACTACCTTTCTAAAATCAAAATTATCCCATAAAAGAGACAAAGATGAATTCTC
AAAATCATCTCCAAAAACACATTATATTCACTAGGATACATGATATTGATGTTTTGATTATATAA
GAAAAGCTTTTCCTGCCACAATTTT
Found at i:4138799 original size:13 final size:13
Alignment explanation
Indices: 4138781--4138806 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4138771 TACAGCAAGT
4138781 ATGTATCGATACA
1 ATGTATCGATACA
4138794 ATGTATCGATACA
1 ATGTATCGATACA
4138807 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4141055 original size:21 final size:21
Alignment explanation
Indices: 4141022--4141066 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4141012 TTGCAAGTTG
*
4141022 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
4141044 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
4141064 AAA
1 AAA
4141067 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:4142890 original size:15 final size:15
Alignment explanation
Indices: 4142870--4142900 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4142860 TAAAAATGTC
*
4142870 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
4142885 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
4142900 C
1 C
4142901 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Done.