Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 27 of 47
Found at i:4144974 original size:20 final size:20
Alignment explanation
Indices: 4144907--4144984 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
4144897 ATGTCCAAAA
*
4144907 TGTATCGATACATGTTT-TT
1 TGTATCGATACATTTTTCTT
* *
4144926 TGTATCGATACATCTGGAAATTCTA
1 TGTATCGATACAT-T----TTTCTT
4144951 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
4144971 TGTATCGATACATT
1 TGTATCGATACATT
4144985 GTATCGATAC
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
19 13 0.27
20 18 0.38
24 3 0.06
25 14 0.29
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTT
Found at i:4144988 original size:13 final size:13
Alignment explanation
Indices: 4144970--4145008 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
4144960 ACATTTTTCT
4144970 TTGTATCGATACA
1 TTGTATCGATACA
4144983 TTGTATCGATACA
1 TTGTATCGATACA
*
4144996 CTGTATCGATACA
1 TTGTATCGATACA
4145009 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4147502 original size:20 final size:20
Alignment explanation
Indices: 4147479--4147552 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
4147469 ACAATTCAAA
4147479 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
4147499 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
4147520 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
*
4147540 CTATCGATACATG
1 GTATCGATACATG
4147553 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:4147523 original size:21 final size:21
Alignment explanation
Indices: 4147497--4147572 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
4147487 ACATGTTGCA
4147497 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
4147518 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
4147538 ATCTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
4147559 ATGTATCGATACAT
1 ATGTATCGATACAT
4147573 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:4147530 original size:41 final size:41
Alignment explanation
Indices: 4147479--4147572 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
4147469 ACAATTCAAA
*
4147479 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATCTATCGATACATGAAAAAGAT
4147520 GTATCGATACATGTTGCAATCTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATCTATCGATACATGAAAAAGAT
4147561 GTATCGATACAT
1 GTATCGATACAT
4147573 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATCTATCGATACATGAAAAAGAT
Found at i:4147629 original size:13 final size:13
Alignment explanation
Indices: 4147611--4147636 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4147601 TACAGCAAGT
4147611 ATGTATCGATACA
1 ATGTATCGATACA
4147624 ATGTATCGATACA
1 ATGTATCGATACA
4147637 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4149051 original size:272 final size:272
Alignment explanation
Indices: 4148553--4149087 Score: 770
Period size: 272 Copynumber: 2.0 Consensus size: 272
4148543 AAAAAGATTC
* *
4148553 TTGTAACAATCTCCATTATTTTGTGATTAGGTAGCCAAAACACACTCTCTTCATTAGGATGCATG
1 TTGTAACAATCTCCACTATTTTGTGATTAGGCAGCCAAAACACACTCTCTTCATTAGGATGCATG
* * * *
4148618 ATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCCTTCCACTATCTTTTTGAAATCAAAGTTT
66 ATATTGATGCCTTGATTTTCCCAAGAAATGCTTTTCCTTCCACTATCCTTTTAAAATCAAAGTTT
* * *
4148683 GTCCCATAAAAGAGACAAAGGCGAATTCTCAAAATCTTCTCCAAAAACACATTTTATTCATTGGG
131 GCCCCATAAAAGAGACAAAGACGAATTCTCAAAATCATCTCCAAAAACACATTTTATTCATTGGG
* *
4148748 ATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGA-CTTTCCTTATAAT
196 ATACATGATATAGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTT-CTTAAAAT
4148812 TTGAAATGAATTT
260 TTGAAATGAATTT
* * * * *
4148825 TTGTAATAATCTCCGCTATTTTTGTGATTAGGCAGCCAAAACACGCTCTCTTCCTTGGGATGCAT
1 TTGTAACAATCTCCACTA-TTTTGTGATTAGGCAGCCAAAACACACTCTCTTCATTAGGATGCAT
* * * *
4148890 GATATTGATGCCTTGATTTTCCCAGGAACTGGTTTTCTTTCCACTA-CCTTTTAAAATCAAAGTT
65 GATATTGATGCCTTGATTTTCCCAAGAAATGCTTTTCCTTCCACTATCCTTTTAAAATCAAAGTT
* * * * * *
4148954 TGCCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTT-TTCATTT
130 TGCCCCATAAAAGAGACAAAGACGAATTCTCAAAATCATCTCCAAAAACACATT-TTATTCATTG
* *
4149018 GGATGCATGATATAGATGTTTTGATTTTATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTAAAA
194 GGATACATGATATAGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTAAAA
4149083 TTTGA
259 TTTGA
4149088 GTTCGTATGT
Statistics
Matches: 232, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
272 144 0.62
273 88 0.38
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (272 bp):
TTGTAACAATCTCCACTATTTTGTGATTAGGCAGCCAAAACACACTCTCTTCATTAGGATGCATG
ATATTGATGCCTTGATTTTCCCAAGAAATGCTTTTCCTTCCACTATCCTTTTAAAATCAAAGTTT
GCCCCATAAAAGAGACAAAGACGAATTCTCAAAATCATCTCCAAAAACACATTTTATTCATTGGG
ATACATGATATAGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTAAAATT
TGAAATGAATTT
Found at i:4149690 original size:467 final size:467
Alignment explanation
Indices: 4149016--4149946 Score: 1499
Period size: 467 Copynumber: 2.0 Consensus size: 467
4149006 TTCTTTTCAT
* * * *
4149016 TTGGATGCATGATATAGATGTTTTGATTTTATAAGAAAAGCTTTTCTTGCCACGATCTTTCTTAA
1 TTGGATGAATGATATAGATGCTTTGATTTTATAAGAAAAGCTTTTCTTGCCACGATATTCCTTAA
* * *
4149081 AATTTGAGTTCGTATGTCAAATGAAACAATCGTGGATTCTTATAATAATCTTCATTCTTTTCATG
66 AATTTGAGTTCGTACGTCAAATGAAACAAACGGGGATTCTTATAATAATCTTCATTCTTTTCATG
* * *
4149146 ATTAGGCAACCAAAACGCATTCTCCTTTTTGGGATACACAATATTAATGCTTTGATTTCAGAAGA
131 ATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACAATATTAATGCTTTGATTTCAGAAGA
4149211 AAAGGTTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACATGG
196 AAAGGTTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACATGG
*
4149276 TTTTATGCAATAATCTCCATTCTTTCAAAGGGTAGGCATGATAAACACGTTATCCTCTTTGGGAT
261 TTTTACGCAATAATCTCCATTCTTTCAAAGGGTAGGCATGATAAACACGTTATCCTCTTTGGGAT
4149341 GCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCAACTTATTTTCATAAAGCAAA
326 GCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCAACTTATTTTCATAAAGCAAA
* * *
4149406 GTTCAATCATCAAATAAGACAAAAACAGATTCTTATAATAATCT-CATTTATTTT-TTATTAAGT
391 GTTCAATCATCAAACAAAACAAAAACAGATTCTTATAATAATCTCCA-TTATTTTGTGATTAAGT
4149469 AGCCAAAACATGC
455 AGCCAAAACATGC
* * * * *
4149482 TTGGATGAATGATATTA-ATGCTTTGATTTTTCTGAGAAATGCTTTTCTTTCCATGATATTCCTT
1 TTGGATGAATGATA-TAGATGCTTTGA-TTTTATAAGAAAAGCTTTTCTTGCCACGATATTCCTT
* * * *
4149546 ATAATTTGAGTTTGTACGTCAAATGAATCAAAGGGGGATTCTTATAATAATCTTCATTCTTTTCA
64 AAAATTTGAGTTCGTACGTCAAATGAAACAAACGGGGATTCTTATAATAATCTTCATTCTTTTCA
* * *
4149611 TGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACGCGATATTAATGCTTTGATTTCATAA
129 TGATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACAATATTAATGCTTTGATTTCAGAA
* *
4149676 GTAAAGTTTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACAT
194 GAAAAGGTTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACAT
4149741 GGTTTTACGCAATAATCTCCATTCTTTCAAAGGGTAGGCATGATAAACACGTTATCCTCTTTGGG
259 GGTTTTACGCAATAATCTCCATTCTTTCAAAGGGTAGGCATGATAAACACGTTATCCTCTTTGGG
* *
4149806 ATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCTACTTATTTTCGTAAAGCA
324 ATGCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCAACTTATTTTCATAAAGCA
* * * * *
4149871 AAGTTCATTCGTCAAACAAAACAAAAATAGATTCTTGTAATAATCTCCATTATTTTGTGATTAGG
389 AAGTTCAATCATCAAACAAAACAAAAACAGATTCTTATAATAATCTCCATTATTTTGTGATTAAG
4149936 TAGCCAAAACA
454 TAGCCAAAACA
4149947 CACTCTTTTC
Statistics
Matches: 426, Mismatches: 35, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
466 21 0.05
467 386 0.91
468 19 0.04
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (467 bp):
TTGGATGAATGATATAGATGCTTTGATTTTATAAGAAAAGCTTTTCTTGCCACGATATTCCTTAA
AATTTGAGTTCGTACGTCAAATGAAACAAACGGGGATTCTTATAATAATCTTCATTCTTTTCATG
ATTAGGCAACCAAAACACATTCTCCTTATTCGGATACACAATATTAATGCTTTGATTTCAGAAGA
AAAGGTTTTTTTCTCCACCGTTTTCCTTAGAGTCAAAGTTTATACCTTAACTTTGACAAACATGG
TTTTACGCAATAATCTCCATTCTTTCAAAGGGTAGGCATGATAAACACGTTATCCTCTTTGGGAT
GCACTATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCAACTTATTTTCATAAAGCAAA
GTTCAATCATCAAACAAAACAAAAACAGATTCTTATAATAATCTCCATTATTTTGTGATTAAGTA
GCCAAAACATGC
Found at i:4152044 original size:614 final size:612
Alignment explanation
Indices: 4149516--4153042 Score: 4192
Period size: 614 Copynumber: 5.8 Consensus size: 612
4149506 GATTTTTCTG
* * * * * * * ***
4149516 AGAAATGCTTTTCTTTCCATGATATTCCTTATAATTTGAGTTTGTACGTCAAATGAATCAAAGGG
1 AGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAG-TTGTATGTCAAATGAAACAAACAA
*
4149581 GGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTCGG
65 GGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGG
* * *
4149646 ATACGCGATATTAATGCTTTGATTTCATAAGTAAAGTTTTTTTTCTCCACCGTTTTCCTTAGAGT
130 ATACACGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTTCTCCACCGTTTTCCTTAGAAT
** * * **
4149711 CAAAGTTTATACCTTAACTTTGACAAACATGGTTTTACGCAATAATCTCCATTCTTTCAAAGGGT
194 CAAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATT
** * * * *
4149776 AGGCATGATAAACACGTTATCCTCTTTGGGATGCACTATATTGACGCATTGGTTATGCAAGTAAA
259 AGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAA
* * * * *
4149841 GTTTTTCTTGCTACTTATTTTCGTAAAGCAAAGTTCATTCGTCAAACAAAACAAAAATAGATTCT
324 GTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAAACAAAAACAGATTCT
* * * ** ** *
4149906 TGTAATAATCTCCA-T-TATTTTGTGATTAGGTAGCCAAAACACACTCTTTTCATTAGGATGCAT
389 TGTAATAATCTCCACTATTTTTTCTGATTAGGCAGCCAAAACACACTCTCCTCATCGGGATGCAA
* * * * * * *
4149969 GATATTGATGCTTTGATTTTTGCAGGAATTGGTTTTCTTTGCACTACC-TTTTAAAATCAATGTT
454 GATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTT
* * * * * * * *
4150033 T-ACTCCTTGAAAGAGACAAAGATGGATTCTGATAATGATCTCCAAAAGCACATTCTTTTCATTA
519 TGTC-CCTTAAAAGAGACAATGATGAATTCTCATAAT-ATCTCCAAAAACACATTCTATTCATTG
* *
4150097 GGATGCATGATATTGATGTTTTGATTATATA
582 GGATACATGATATTGTTGTTTTGATTATATA
* * * *
4150128 GGAAAAGCTTTTCTTGCCACGATCTTTCTTAAAATTTGAGTTCGTATGTCAAGTGAAACAAACAT
1 AGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTT-GTATGTCAAATGAAACAAACAA
* * * *
4150193 GGATTCTTATAATACTCTTCATTCTTTTCATGACTAGACAACCAAAACACATTCTCCTTATTAGG
65 GGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGG
** *
4150258 ATACACGATATTAATGCTTTGATTTCATAAG---TTTTTTTTTCTCCACCGTTTTTCTT-GAAAT
130 ATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAG-AAT
* *
4150319 CCAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCACTCTTTCAATGATT
194 CAAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATT
* ** * *
4150384 GGGCACTGTAAACATGTTATCTTCTTTGGGATGCACAATATTGACGTATTGGTTATACAAGAAAA
259 AGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAA
* *
4150449 GTTTTTCTTGCCACTTATTTTCTTAAAGCAAAGTTCATTCGACAAA-AAAATCAAAAACAGATTC
324 GTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAAA-CAAAAACAGATTC
* *
4150513 TTGTTATAATCTCCACT-TTTTTTCTGATTAGGCAACCAAAACACACTCTCCTCATCGGGATGCA
388 TTGTAATAATCTCCACTATTTTTTCTGATTAGGCAGCCAAAACACACTCTCCTCATCGGGATGCA
* *
4150577 AGATATTGAAGCTTTGATTTTAGCAAGAAATGTTTTTCTTTCCGCTACCTTTTTAAAATCAAAGT
453 AGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGT
* * *
4150642 TTGTCCCCTAAAAAAGACAATGATGAA--CTC-------CT---AAAACACATTCTATTCAGTAG
518 TTGTCCCTTAAAAGAGACAATGATGAATTCTCATAATATCTCCAAAAACACATTCTATTCA-TTG
*
4150695 TG-TACATGATATTGTTGTTTTGATTATATA
582 GGATACATGATATTGTTGTTTTGATTATATA
* *
4150725 AGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTACGTATGTGAAATGAAACAAA-AA
1 AGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGT-TGTATGTCAAATGAAACAAACAA
* * * * * * *
4150789 TGGATTCTTATAACAGTTTTCATTCTTTTCAT-ATTTAGGCAACCAAAAAACATTCACTTTTTTG
65 -GGATTCTTATAATAATCTTCATTCTTTTCATGA-TTAGGCAACCAAAACACATTCTCCTTATTG
* * * *
4150853 GGATACACGATATTAATGTTTTGAATTCATAAGAAAAGTTTTTTCCTCCATCGTTTTTCC-TAGA
128 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCG-TTTTCCTTAGA
* * * * *
4150917 ATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTATGCAATAATCTCTATTATTTCAATGA
192 ATCAAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGA
* * * ** *
4150982 TTAGGC-GCATAAACATGTTATTTTCTTTGGGATGCACAATATTGACACATTTTTTATGTAAGAA
257 TTAGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAA
* * * *
4151046 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTTGCCAAA-AAATACAAATACGGAT
322 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAA-ACAAAAACAGAT
* * * * ** * *
4151110 TTTTGTAACAATCTCCACTTTTTTTTTTTCTGATTAGGCAACCAAAACATGCTCTCCTGATCGAG
386 TCTTGTAATAATCTCCAC---TATTTTTTCTGATTAGGCAGCCAAAACACACTCTCCTCATCGGG
*
4151175 ATGCAAGATATTGAAGCTTTAATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATC
448 ATGCAAGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATC
*
4151240 AAAGTTTGTCCCCTAAAAGAGACAATGATG-A-TCTC-------CT---AAAACACATTCTATTC
513 AAAGTTTGTCCCTTAAAAGAGACAATGATGAATTCTCATAATATCTCCAAAAACACATTCTATTC
*
4151293 AGTAGGG-TACATGATATTGTTGTTTTGATTATATA
578 A-TTGGGATACATGATATTGTTGTTTTGATTATATA
* * * * *
4151328 AGAAAAGCTTTTCTTGCCA-TAACTTTCCTTATAATTTGAAATCGTATGTGAAATGAAACAAACA
1 AGAAAAGCTTTTCTTGCCACGATCTTT-CTTATAATTTG-AGTTGTATGTCAAATGAAACAAACA
* * * *
4151392 TA-GATTCTTATAATAATCTTCATTCTTTTCATGATGT-GGCAGCCAAAACAAACTCTCCATATT
64 -AGGATTCTTATAATAATCTTCATTCTTTTCATGAT-TAGGCAACCAAAACACATTCTCCTTATT
* * * * * *
4151455 AGGATACAAGATATTAATGCTTTGGTTTAAGAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGA
127 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGA
* * *
4151520 ATCAAAGTTTATGCCTTCACTAAGACAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGA
192 ATCAAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGA
* * * * *
4151585 TTAGGCACCTTAAACATGTTATCTTCTTTGGGATACACAATTTTGATGCATTGGGTATGCAAGAA
257 TTAGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAA
* * **
4151650 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGCTCATTCGTCAAATAATACAAAAATGGATT
322 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAAACAAAAACAGATT
* * * *
4151715 TTTGTAGTAATCTCCACTATTTTCTCTGATTAGGCAGCCAAAACGCACTCTCCTCATCGGGATGC
387 CTTGTAATAATCTCCACTATTTTTTCTGATTAGGCAGCCAAAACACACTCTCCTCATCGGGATGC
*
4151780 AAGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTATCTTTTTAAAATCAAAG
452 AAGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAG
* * *
4151845 TTTGTCCCTTAAAAGATACAATGATGAATTCTCATAATGATCTCCAAAAAAACAATCTATTCATT
517 TTTGTCCCTTAAAAGAGACAATGATGAATTCTCATAAT-ATCTCCAAAAACACATTCTATTCATT
* *
4151910 GGGATACATGATATTGTTGTTTTCATTACATA
581 GGGATACATGATATTGTTGTTTTGATTATATA
*
4151942 AGAAAAGCTTTTCTTGCCACGA-CTTTTCTTATAATTTGAGATTGTATGTCCAATGAAACAAACA
1 AGAAAAGCTTTTCTTGCCACGATC-TTTCTTATAATTTGAG-TTGTATGTCAAATGAAACAAACA
* * *
4152006 AGGATTCTTATAATAATCTTCATTCTTTTCGTGATGT-GGCAACCAAAACACACTCGCCTTATTG
64 AGGATTCTTATAATAATCTTCATTCTTTTCATGAT-TAGGCAACCAAAACACATTCTCCTTATTG
4152070 GGATACACGATATTAATGCTTTTG-TTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGA
128 GGATACACGATATTAATGC-TTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGA
* * * * * * *
4152134 ATCATACTTTATACCTTGACTAAGACAATCTTGGATTTATGCAATAATCTCCATTCTTTCAATGT
192 ATCAAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGA
* *
4152199 TTAGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATTTTGATGCATTGGTTATGCAAGAA
257 TTAGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAA
* * **
4152264 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTTAAATAATACAAAAATGGATT
322 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAAACAAAAACAGATT
* * * * * * * * * * *
4152329 TTTGTAATAGTCTCTAAT-TTTTTTGC-GATTAGGTAGCCAAAACGCGCTCTCTTCCTTGGGATA
387 CTTGTAATAATCTCCACTATTTTTT-CTGATTAGGCAGCCAAAACACACTCTCCTCATCGGGATG
* * * * * * *
4152392 CATGATATTGAGGCTTTGTTTTTCGCAAGAACTGGTTTTCTTTCCACTACCTTTTTGAAATCAAA
451 CAAGATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAA
* * * * * * *
4152457 GTTCGTCCTTTAAAAAAGACAAAGATGAATTCTCATAATCATCTCCAAAAACAAATCCGATTCAT
516 GTTTGTCCCTTAAAAGAGACAATGATGAATTCTCATAAT-ATCTCCAAAAACACATTCTATTCAT
* *
4152522 TGGGATACATGATATTGATGCTTTGATTATATA
580 TGGGATACATGATATTGTTGTTTTGATTATATA
* * * * *
4152555 AGAAAAGCTTTTCTCGCCACAATCTTTCTTATACTTTGAGTTCGTATGTCAAATGAAACAGACAT
1 AGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTT-GTATGTCAAATGAAACAAACAA
*
4152620 GAATTCTTATAACAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATT
65 GGATTCTTAT---AATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATT
* * * *
4152685 GGGATACACGATATTAATGCTTTGATCTGATAAGAAAAGTTTTTTTCTCCATCGTTTTTCTTA-A
127 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGA
* * *
4152749 ATCAAAGTTTATACCTTAGCTAAGACAAACATGAATTTACACAATAATCTCCATTCTTTCAATGA
192 ATCAAAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGA
* * * * * *
4152814 TTGGGCACAATAAACACGTTATCTTTTTTGGGATGCTCAATATTGACGCATTGGTTATGCAAGTA
257 TTAGGCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAA
* * * * *
4152879 AAGTTTTTCTTGCCACTTATTTCCATAAAGAAAAGTTC-TTTGATCAAGTAAAACAAAAACAAAT
322 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCG-TCAAATAAAACAAAAACAGAT
* * * * *
4152943 TCTTATAATAATCTCCA-T-TATTTTATGATTAGGTAGCC-AAA-ACA---TGCT--T--GGATG
386 TCTTGTAATAATCTCCACTATTTTTTCTGATTAGGCAGCCAAAACACACTCTCCTCATCGGGATG
* *
4152997 -AATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCA
451 CAA-GATATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCA
4153043 TGATATTCCT
Statistics
Matches: 2533, Mismatches: 322, Indels: 127
0.85 0.11 0.04
Matches are distributed among these distances:
596 2 0.00
597 179 0.07
598 2 0.00
599 120 0.05
600 81 0.03
601 133 0.05
602 14 0.01
603 395 0.16
604 124 0.05
605 46 0.02
607 6 0.00
608 207 0.08
609 83 0.03
610 33 0.01
611 5 0.00
612 143 0.06
613 248 0.10
614 421 0.17
615 190 0.08
616 101 0.04
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (612 bp):
AGAAAAGCTTTTCTTGCCACGATCTTTCTTATAATTTGAGTTGTATGTCAAATGAAACAAACAAG
GATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGA
TACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCA
AAGTTTATACCTTAACTAAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTAG
GCACCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGT
TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAAACAAAAACAGATTCTTG
TAATAATCTCCACTATTTTTTCTGATTAGGCAGCCAAAACACACTCTCCTCATCGGGATGCAAGA
TATTGAAGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTG
TCCCTTAAAAGAGACAATGATGAATTCTCATAATATCTCCAAAAACACATTCTATTCATTGGGAT
ACATGATATTGTTGTTTTGATTATATA
Found at i:4153415 original size:468 final size:470
Alignment explanation
Indices: 4152530--4153517 Score: 1328
Period size: 468 Copynumber: 2.1 Consensus size: 470
4152520 ATTGGGATAC
* * * ** * *
4152530 ATGATATTGATGCTTTGATTAT-ATAAGAAAAGCTTTTCTCGCCACAATCTTTCTTATACTTTGA
1 ATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACAATATTCCTTATACTTTGA
* *
4152594 GTTCGTATGTCAAATGAAACAGACATGAATTCTTATAACAATAATCTTCATTCTTTTCATGATTA
66 GTTCGTATGTCAAATGAAACAAACACGAATTCTTAT-A-AATAATCTTCATTCTTTTCATGATTA
*
4152659 GGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATCTGATAAGAAAAG
129 GGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATCTCATAAGAAAAG
* * *
4152724 TTTTTTTCTCCATCGTTTTTCTTAAATCAAAGTTTATACCTTAGCTAAGACAAACATGAATTTAC
194 TTTTTTTCTCCATCGATTTCCTTAAATCAAAGTTTATACCTTAACTAAGACAAACATGAATTTAC
*
4152789 ACAATAATCTCCATTCTTTCAATGATTGGGCACAATAAACACGTTATCTTTTTTGGGATGCTCAA
259 ACAATAATCTCCATTCTTTCAATGATTAGGCACAATAAACACGTTATCTTTTTTGGGATGCTCAA
4152854 TATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTCCATAAAGAAAAGTTCTT
324 TATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTCCATAAAGAAAAGTTCTT
* *
4152919 TGATCAAGTAAAACAAAAACAAATTCTTATAATAATCTCCATTATTTTATGATTAGGTAGCCAAA
389 CGATCAAATAAAACAAAAACAAATTCTTATAATAATCTCCATTATTTTATGATTAGGTAGCCAAA
*
4152984 AC-A-TGC-TTGGATGA
454 ACTACTGCATTAGATGA
* ** *
4152998 ATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCATGATATTCCTTATATTTTGA
1 ATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACAATATTCCTTATACTTTGA
* * * * * *
4153063 GTTTGTATGTCAAATGTATCAAATACGGATTCTTAT-AATAATCTTCATTTTTTTCATGATTAGG
66 GTTCGTATGTCAAATGAAACAAACACGAATTCTTATAAATAATCTTCATTCTTTTCATGATTAGG
* * * * *
4153127 CAACCAAAACACATTCTCCTTATTTGGATACACGATATTGATGCTTTGATTTCCTAAGTAAAGTT
131 CAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATCTCATAAGAAAAG-T
* ** * *
4153192 TTTTTTCTCCATCGATTTCCTTAAAATCAAAGTTTATTCCTTAACTTTGACAGAA-GTGGATTTA
195 TTTTTTCTCCATCGATTTCCTT-AAATCAAAGTTTATACCTTAACTAAGACA-AACATGAATTTA
** ***
4153256 TGCAATAATCTCCATTCTTTCAATGATTAGGCATGGTAAACACGTTATCTTCTTTT-GGATG-TA
258 CACAATAATCTCCATTCTTTCAATGATTAGGCACAATAAACACGTTATCTT-TTTTGGGATGCT-
* * * *
4153319 CTATATTGATGCGTTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTTCATAAAGAAAAGTT
321 CAATATTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTCCATAAAGAAAAGTT
* * *
4153384 CATTCG-TCAAATAAAACAAAAATAGATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGC
386 C-TTCGATCAAATAAAACAAAAACAAATTCTTATAATAATCTCCATTATTTTATGATTAGGTAGC
* *
4153448 CAAAACTTACTCTCTTCATTAGATGC
450 CAAAAC-TA----CTGCATTAGATGA
*
4153474 ATGATATTGATGCTTTGATTTTCTCAAGAAATGCTTTTCTTTCC
1 ATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCC
4153518 CCTACCTTTT
Statistics
Matches: 453, Mismatches: 52, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
466 84 0.19
467 22 0.05
468 225 0.50
469 70 0.15
470 1 0.00
475 2 0.00
476 49 0.11
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (470 bp):
ATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACAATATTCCTTATACTTTGA
GTTCGTATGTCAAATGAAACAAACACGAATTCTTATAAATAATCTTCATTCTTTTCATGATTAGG
CAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATCTCATAAGAAAAGTT
TTTTTCTCCATCGATTTCCTTAAATCAAAGTTTATACCTTAACTAAGACAAACATGAATTTACAC
AATAATCTCCATTCTTTCAATGATTAGGCACAATAAACACGTTATCTTTTTTGGGATGCTCAATA
TTGACGCATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTCCATAAAGAAAAGTTCTTCG
ATCAAATAAAACAAAAACAAATTCTTATAATAATCTCCATTATTTTATGATTAGGTAGCCAAAAC
TACTGCATTAGATGA
Found at i:4153809 original size:612 final size:604
Alignment explanation
Indices: 4153023--4154121 Score: 1675
Period size: 612 Copynumber: 1.8 Consensus size: 604
4153013 TGATTTTCGC
* * * * *
4153023 AAGAAATGCTTTTCTTTCCATGATATTCCTTATATTTTGAGTTTGTATGTCAAATGTATCAAATA
1 AAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTATGTCAAATGAATCAAACA
* *
4153088 CGGATTCTTATAATAATCTTCATTTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTTG
66 CGGATTCTTATAATAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
** * * *
4153153 GATACACGATATTGATGCTTTGATTTCCTAAGTAAAGTTTTTTTTCTCCATCGATTTCCTTAAAA
131 GATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGATTTCCTTAAAA
* *
4153218 TCAAAGTTTATT-CCTTAACTT-TGACAGAA-GTGGATTTATGCAATAATCTCCATTCTTTCAAT
196 TCAAAGTTT-TTACCTTAA-TTGAGACA-AACATGGATTTATGCAATAATCTCCATTCTTTCAAT
* * * * * *
4153280 GATTAGGCATGGTAAACACGTTATCTTCTTTTGGATGTACTATATTGATGCGTTGGTTATGCAAG
258 GAGTAGGCATGATAAACACGTTATCCTCTTTGGGATGCACTATATTGATGCATTGGTTATGCAAG
* * *
4153345 TAAAGTTTTTCTTGCCACTTATTTTCATAAAGAAAAG-TTCATTCGTCAAATAAAACAAAAATAG
323 TAAAGTTTTTCTTGCCACTTATTTTCATAAAGAAAAGTTTAATT-GTCAAATAAAACAAAAACAA
* * * *
4153409 ATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACTTACTCTCTTCATTAGATGC
387 ATTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAAC--A-----TGC-TTAGATGA
* *
4153474 ATGATATTGATGCTTTGATTTTCTCAAGAAATGCTTTTCTTTCCCCTACCTTTTTAAAATCAAAG
444 ATGATATTAATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCCCTACCTTTTTAAAATCAAAG
4153539 TTTGTCCCATAAAAGAGACAAAGATGAATTCTCGCAATCATCTCCAAAAAGTCATTCTATTCATT
509 TTTGTCCCATAAAAGAGACAAAGATGAATTCTCGCAATCATCTCCAAAAAGTCATTCTATTCATT
4153604 GGGATACAAGATATGGATGTTTTGGTTATAT
574 GGGATACAAGATATGGATGTTTTGGTTATAT
4153635 AAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTATGTCAAATGAATCAAACA
1 AAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTATGTCAAATGAATCAAACA
* * *
4153700 GGGATTGTTATATTAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
66 CGGATTCTTATAATAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* *
4153765 GATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGTTTTCCTTAGAA
131 GATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGATTTCCTTAAAA
4153830 TCAAAGTTTTTACCTTAATTGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAG
196 TCAAAGTTTTTACCTTAATTGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAG
*
4153895 TGGGCATGATAAACACGTTATCCTCTTTGGGATGCACTATATTGATGCATTGGTTATGCAAGTAA
261 TAGGCATGATAAACACGTTATCCTCTTTGGGATGCACTATATTGATGCATTGGTTATGCAAGTAA
* * * **
4153960 AGTTTTTCTTGCCATTTATTTTCATAAAGCAAAGTTTAATTTTCAAATAAGGCAAAAACAAATTC
326 AGTTTTTCTTGCCACTTATTTTCATAAAGAAAAGTTTAATTGTCAAATAAAACAAAAACAAATTC
* *
4154025 TTATAATAATTTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGGATGAATGATATTAATG
391 TTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTAGATGAATGATATTAATG
*
4154090 CTTTGATTTTCGCGAGAAATGCTTTTCTTTCC
456 CTTTGATTTTCGCAAGAAATGCTTTTCTTTCC
4154122 ATGATATTCC
Statistics
Matches: 440, Mismatches: 43, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
604 47 0.11
605 2 0.00
610 1 0.00
611 6 0.01
612 379 0.86
613 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (604 bp):
AAGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTATGTCAAATGAATCAAACA
CGGATTCTTATAATAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
GATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGATTTCCTTAAAA
TCAAAGTTTTTACCTTAATTGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAG
TAGGCATGATAAACACGTTATCCTCTTTGGGATGCACTATATTGATGCATTGGTTATGCAAGTAA
AGTTTTTCTTGCCACTTATTTTCATAAAGAAAAGTTTAATTGTCAAATAAAACAAAAACAAATTC
TTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTAGATGAATGATATTAATG
CTTTGATTTTCGCAAGAAATGCTTTTCTTTCCCCTACCTTTTTAAAATCAAAGTTTGTCCCATAA
AAGAGACAAAGATGAATTCTCGCAATCATCTCCAAAAAGTCATTCTATTCATTGGGATACAAGAT
ATGGATGTTTTGGTTATAT
Found at i:4154516 original size:467 final size:468
Alignment explanation
Indices: 4153636--4154533 Score: 1419
Period size: 467 Copynumber: 1.9 Consensus size: 468
4153626 TGGTTATATA
*
4153636 AGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTATGTCAAATGAATCAAACAG
1 AGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTACGTCAAATGAATCAAACAG
* *
4153701 GGATTGTTATATTAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGG
66 GGATTCTTATAATAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGG
*
4153766 ATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGTTTTCCTTAGAAT
131 ATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGTTTACCTTAGAAT
* *
4153831 CAAAGTTTTTACCTTAATTGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAGT
196 CAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAGT
* * * * *
4153896 GGGCATGATAAACACGTTATCCTCTTTGGGATGCACTATATTGATGCATTGGTTATGCAAGTAAA
261 AGGCATGATAAACACGCTATCCTCTTTGCGATGCACTATATTGATGCAGTGATTATGCAAGTAAA
* * ** ** *
4153961 GTTTTTCTTGCCATTTATTTTCATAAAGCAAAGTTTAATTTTCAAATAAGGCAAAAACAAATTCT
326 GTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCAATCGTCAAATAAAACAAAAACAAAGTCT
*
4154026 TATAATAATTTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGGATGAATGATATTAATGC
391 TATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGGATGAATGATATTAATGC
4154091 TTTGATTTTCGCG
456 TTTGATTTTCGCG
* *
4154104 AGAAATGCTTTTCTTTCCATGATATTCCTTATAATTTGAGTTTGTACGTCAAATGAATCAAACAG
1 AGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTACGTCAAATGAATCAAACAG
4154169 GGATTCTTATAATAATCTTCAT-TCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
66 GGATTCTTATAATAATCTTCATCT-TTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
4154233 GATACACGATATTAATGCTTTGATTTCATAAGTAAAG-TTTTTTTCTCCACCGTTTACTTTAGAG
130 GATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGTTTACCTTAGAA
* *
4154297 TCAAAGTTTATACCTTAACTT-TGACAAACATGGATTTACGTAATAATC-CCTATTCTTTCAATG
195 TCAAAGTTTATACCTTAA-TTGAGACAAACATGGATTTACGCAATAATCTCC-ATTCTTTCAATG
*
4154360 A-TAAGGCATGATAAACACGCTATCTTCTTTGCGATGCACTATATTGATGCAGTGATTATGCAAG
258 AGT-AGGCATGATAAACACGCTATCCTCTTTGCGATGCACTATATTGATGCAGTGATTATGCAAG
* * *
4154424 TAAAGTTTTTCTTGCTACTTATTTTCATAAAGCAAAGTTCAATCGTCAAATAAAACAAAAATAGA
322 TAAAGTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCAATCGTCAAATAAAACAAAAACAAA
* * *
4154489 GTCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACA
387 GTCTTATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACA
4154534 CACTCTCTTC
Statistics
Matches: 392, Mismatches: 34, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
466 3 0.01
467 230 0.59
468 159 0.41
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (468 bp):
AGAAAAGCTTTTCTTGCCATGATATTCCTTATAATTTGAGTTTGTACGTCAAATGAATCAAACAG
GGATTCTTATAATAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGG
ATACACGATATCAATGCTTTGATTTCATAAGAAAAGTTTTTTTTCTCCACCGTTTACCTTAGAAT
CAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAGT
AGGCATGATAAACACGCTATCCTCTTTGCGATGCACTATATTGATGCAGTGATTATGCAAGTAAA
GTTTTTCTTGCCACTTATTTTCATAAAGCAAAGTTCAATCGTCAAATAAAACAAAAACAAAGTCT
TATAATAATCTCAATTATTTTGTGATTAAGTAGCCAAAACATGCTTGGATGAATGATATTAATGC
TTTGATTTTCGCG
Found at i:4155072 original size:41 final size:41
Alignment explanation
Indices: 4155026--4155108 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
4155016 TTTTCAAAAT
*
4155026 TTGAAGATTTTGGAAGAAGTGCTTT-GAAAACAACTTGAAGA
1 TTGAAGATTTTGGAAGAA-TGATTTCGAAAACAACTTGAAGA
* *
4155067 TTGAAGATTTTGGAAGCATTATTTCGAAAACAACTTGAAGA
1 TTGAAGATTTTGGAAGAATGATTTCGAAAACAACTTGAAGA
4155108 T
1 T
4155109 AAAGACAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 4 0.11
41 34 0.89
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (41 bp):
TTGAAGATTTTGGAAGAATGATTTCGAAAACAACTTGAAGA
Found at i:4155860 original size:13 final size:13
Alignment explanation
Indices: 4155842--4155867 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4155832 ATAATTCACT
4155842 GTGTATCGATACA
1 GTGTATCGATACA
4155855 GTGTATCGATACA
1 GTGTATCGATACA
4155868 AAGTAATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:4158130 original size:610 final size:607
Alignment explanation
Indices: 4156182--4158710 Score: 3145
Period size: 608 Copynumber: 4.2 Consensus size: 607
4156172 CAAACACAAT
* * * * * * *
4156182 GATTTGGCACCATAAACACGTTATCCTCAATGGGATGCATAATACTGACGCATTGGTTATGCAAG
1 GATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAG
* * * * ** * ** ** * * * **
4156247 TAGAGTTTTTCTTACCAATTATTTCCACAGAGCAAAGTTTGTTCGTTAAATAGGACTAATATCGA
66 AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGCCAAATAAGACAAAAAAGGA
* * *
4156312 TTCTTGTAATAATCTCTATTATTTTGTGATTAGGTAGCCAAAACATGCTCTCTTCATTGGGATGC
131 TTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTTTTCATTGGGATGC
* * * * *
4156377 ATGATATTGATACTTTGATTTTCATAAGAAATGCTTTACTTTCCATTACCATTTTAAAATCAAAA
196 ATGATATTGATGCTTTGATTTTCACAAAAAATGCTTTACTTTCCACTACCATTTTAAAATCAAAG
* *
4156442 TTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGAT-TCCCAAAAACACATTCTATTAAT
261 TTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCT-AC-AAAACACATTCTATTTAT
* * *
4156506 TAGGATAC---A--TGAT-TTTTGATTATATAAGAAAAGCTTTTCTTCCCACGATTTTCCTTATA
324 TGGGATACATGATTTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATA
* * * * *
4156565 ATTTGAGTTCGTATGACAAATAAAACAAAATTGGATTCTTATAATCATCTTCATTCTTTTCAAGA
389 ATTTGAGTTCGTATGTCAAATGAAACAAAA-TGGATTCTTATAATAATCTTCATTCATTTCATGA
* *
4156630 TTAGGCAACTAAAACACATTCTCCTTATTAGGATACACAAGATTAATGCTTTGATTTCATAAGAA
453 TTAGGCAACTAAAACACATTCTCCTTATTGGGATACACGAGATTAATGCTTTGATTTCATAAGAA
* *
4156695 AAGGTTTGTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGAT
518 AAGTTTTG-T-TCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATAAGGCAAACATGGAT
* *
4156760 TTATGCAATAATCTCCGTTCTTTTCAAT
581 TTACGCAATAATCTCCGTTC-TTTCAAC
* * * *
4156788 GATTGGGCACCGTAAACACGTTATCATCTTTAGGATGCACAATATTGATGCATTGGTAATGCAAG
1 GATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAG
* * * * * * *
4156853 AAATGTTTTTCTTCCCCCTTATATCCTTAAAGCAAAGTTCATTCACCAAATAATAC-AAAATGGA
66 AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGCCAAATAAGACAAAAAAGGA
* * * * * * * *
4156917 TTCTTATAATAATCTCTATTTTTTTGTGATAAGGCAGCCAAAACAAGCTATCTTCTTTGGGATGC
131 TTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTTTTCATTGGGATGC
* * * *
4156982 ATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCCCTACCATTTT-AAATAAAAA
196 ATGATATTGATGCTTTGATTTTCACAAAAAATGCTTTACTTTCCACTACCATTTTAAAAT-CAAA
* * * * *
4157046 GTTTGTCCCTTAAAAGCGACAAAGATGAATTCTCGTAATGATCTCCAAAAGCACATTTTATTCAT
260 GTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTACAAAA-CACATTCTATTTAT
4157111 TGGGATACATGATATTTGATGTTTTGATTATATAAGAAAAGCTTTTCTCGTAG-CA--ATTTTCC
324 TGGGATACATG--ATTTGATGTTTTGATTATATAAGAAAAGCTTTTCT--T-GCCATGATTTTCC
* * * *
4157173 TTATAATTTGAGTTCGTATGTCAAAGGAAACAAAAATGGATTCATATAACAATCTTCATTCCTTT
384 TTATAATTTGAGTTCGTATGTCAAATGAAAC-AAAATGGATTCTTATAATAATCTTCATTCATTT
* * * * * * *
4157238 CATGATTAGACAACCAAAACACA-T-TCCTTATTGAGATACCCGATATTAATCCGTTGATTTCAT
448 CATGATTAGGCAACTAAAACACATTCTCCTTATTGGGATACACGAGATTAATGCTTTGATTTCAT
* * * *
4157301 GAGAAAAGTTTT-CTCCACCGTTTTCCTTAGAATCAAAGTTTATACATTAAA-AATGGCAAACAT
513 AAGAAAAGTTTTGTTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATAA-GGCAAACAT
* *
4157364 GGATTTACACAATAATCTCCGTTCTTTGAAC
577 GGATTTACGCAATAATCTCCGTTCTTTCAAC
* * *
4157395 GATTGGGCACCATAAACACGCTATCTTCATTAGAATGCACAATATTGATGAATTGGTTATGCAAG
1 GATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAG
* * * *
4157460 AAAAGATTTTCTTGCCACTTAATTGCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAAAGGA
66 AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGCCAAATAAGACAAAAAAGGA
* * *
4157525 TTCTTATAAAAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTTTTTAATGGGATGC
131 TTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTTTTCATTGGGATGC
* * * * *
4157590 ATGATATTAATGCTTTGATTTTCGCAAAAAATACTTTTCTTTCCACTACCTTTTTAAAATCAAAG
196 ATGATATTGATGCTTTGATTTTCACAAAAAATGCTTTACTTTCCACTACCATTTTAAAATCAAAG
* * * * * *
4157655 TATGTCCCCTAAAAGAAACAAAGATGAATTCTCATAACGATCTAGACAAACAAATTCTATTTATT
261 TTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTACA-AAACACATTCTATTTATT
* *
4157720 GGGATACATGATGTTGATGTTTTGATTAAATAAGAAAAGCTTTTATTGCCATGATTTTCCTTATA
325 GGGATACATGAT-TTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATA
* * *
4157785 ATTTGAGTTCATAT-TCAAATGAAACAAATATGGATTCTTAAAATAATCTTTATTCATTTCATGA
389 ATTTGAGTTCGTATGTCAAATGAAACAAA-ATGGATTCTTATAATAATCTTCATTCATTTCATGA
* * * *
4157849 TTAGGCAACTAAAACGCATTCTCTTTATTGGGATACATGATATTAATGCTTTGATTTCATAAGAA
453 TTAGGCAACTAAAACACATTCTCCTTATTGGGATACACGAGATTAATGCTTTGATTTCATAAGAA
* * * *
4157914 AAGTTTTTTTCTTACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATAGATT
518 AAGTTTTGTTC-CACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATAAGGCAAACATGGATT
* *
4157979 TACGCAATAATCTCCTTTCTTTCAAT
582 TACGCAATAATCTCCGTTCTTTCAAC
** * * *
4158005 GATTGGATACCGTAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCGAG
1 GATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAG
*
4158070 AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTTGCCAAAT-AGAACAAAAAAGG
66 AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGCCAAATAAG-ACAAAAAAGG
* * *
4158134 ATTCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTATTCATTAGGATG
130 ATTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTTTTCATTGGGATG
* * *
4158199 CATGATA-TGATGCTTTGATTTTGACAAAAAATGCTTTACTTTCCACTACCTTTTTAAAAACAAA
195 CATGATATTGATGCTTTGATTTTCACAAAAAATGCTTTACTTTCCACTACCATTTTAAAATCAAA
* *
4158263 GTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATATTGATCTCCAAAAACACATTCTATTTAT
260 GTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTAC-AAAACACATTCTATTTAT
* * * *
4158328 TGGGATACATGATATTGACGTTTTGATTATATATGAAAAGCTTTTCTTGGCATGAATTTCCTTAT
324 TGGGATACATGAT-TTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATTTTCCTTAT
* *
4158393 AATTTGAGTTCGTATGTCAAATGAAGC---A--CATTC---TAATAATCTTCATTCATTTCATGA
388 AATTTGAGTTCGTATGTCAAATGAAACAAAATGGATTCTTATAATAATCTTCATTCATTTCATGA
* * * *
4158450 TTAGGCAACTAAAACACATTCTCCCTATTCGGATACATGAGATTAATGCTTTGATTTCATAAGAT
453 TTAGGCAACTAAAACACATTCTCCTTATTGGGATACACGAGATTAATGCTTTGATTTCATAAGAA
* *
4158515 AAGTTTTGTTCTC-CACAGTTTTTCTTAGAATCAAAGTTTATACCTTAAACAAGGCAAACATGGA
518 AAGTTTTGTTC-CAC-CA-TTTTCCTTAGAATCAAAGTTTATACCTTAAATAAGGCAAACATGGA
* *
4158579 TTTACCCAATAATCTCCGTTCTTGT-AGC
580 TTTACGCAATAATCTCCGTTCTT-TCAAC
* * ** *
4158607 AATTGGGCACCATAAACACGTTATCTTCTTTAGGATGCACAATATTGGCGAATTGGTTATGCAAG
1 GATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAG
* * *
4158672 AAAAGATTTTCTTGCCACTTAATTCCTTAAAGAAAAGTT
66 AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTT
4158711 TTGTTCTCCA
Statistics
Matches: 1662, Mismatches: 226, Indels: 74
0.85 0.12 0.04
Matches are distributed among these distances:
600 1 0.00
601 94 0.06
602 155 0.09
603 1 0.00
604 13 0.01
605 183 0.11
606 153 0.09
607 167 0.10
608 285 0.17
609 189 0.11
610 259 0.16
611 43 0.03
612 5 0.00
613 107 0.06
614 4 0.00
615 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36
Consensus pattern (607 bp):
GATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAG
AAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGCCAAATAAGACAAAAAAGGA
TTCTTATAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCTTTTCATTGGGATGC
ATGATATTGATGCTTTGATTTTCACAAAAAATGCTTTACTTTCCACTACCATTTTAAAATCAAAG
TTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTACAAAACACATTCTATTTATTG
GGATACATGATTTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATAAT
TTGAGTTCGTATGTCAAATGAAACAAAATGGATTCTTATAATAATCTTCATTCATTTCATGATTA
GGCAACTAAAACACATTCTCCTTATTGGGATACACGAGATTAATGCTTTGATTTCATAAGAAAAG
TTTTGTTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATAAGGCAAACATGGATTTACG
CAATAATCTCCGTTCTTTCAAC
Found at i:4158844 original size:191 final size:191
Alignment explanation
Indices: 4158510--4158901 Score: 534
Period size: 191 Copynumber: 2.1 Consensus size: 191
4158500 TTGATTTCAT
* *
4158510 AAGATAAGTTTTGTTCTCCACAGTTTTTCTTAGAATCAAAGTTTATACCTTAAACAAGGCAAACA
1 AAGAAAAGTTTTGTTCTCCACAGTTTTCCTTAGAATCAAAGTTTATACCTTAAACAAGGCAAACA
* * *
4158575 TGGATTTACCCAATAATCTCCGTTCTTGTAGCAATTGGGCACCATAAACACGTTATCTTCTTTAG
66 TGGATTTACCCAATAATCTCCATTCTTGTAACAATTGGGCACCATAAACACGTTATCATCTTTAG
* * **
4158640 GATGCACAATATTGGCGAATTGGTTATGCAAGAAAAGATTTTCTTGCCACTTAATTCCTTA
131 GATGCACAATATTGGCGAACTGGTAATGCAAGAAAAGATTTTCTTGCCACTTAAACCCTTA
* **
4158701 AAGAAAAGTTTTGTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACA
1 AAGAAAAGTTTTGTTCTCCACAGTTTTCCTTAGAATCAAAGTTTATACCTTAAACAAGGCAAACA
* ** * * *
4158766 TGGATTTACGCAATAATCTCCATTCTT-TCAATGATTGGGCATCGTAAACACGTTATCATCTTTG
66 TGGATTTACCCAATAATCTCCATTCTTGT-AACAATTGGGCACCATAAACACGTTATCATCTTTA
* ** * * * *
4158830 GGATGCATAATATTGTTGCACTGGTAATGCAAGAAATGTTTTTCTTGCCCCTTAAACCCTTA
130 GGATGCACAATATTGGCGAACTGGTAATGCAAGAAAAGATTTTCTTGCCACTTAAACCCTTA
*
4158892 AAGCAAAGTT
1 AAGAAAAGTT
4158902 CATTTGTCAA
Statistics
Matches: 174, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
190 1 0.01
191 173 0.99
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (191 bp):
AAGAAAAGTTTTGTTCTCCACAGTTTTCCTTAGAATCAAAGTTTATACCTTAAACAAGGCAAACA
TGGATTTACCCAATAATCTCCATTCTTGTAACAATTGGGCACCATAAACACGTTATCATCTTTAG
GATGCACAATATTGGCGAACTGGTAATGCAAGAAAAGATTTTCTTGCCACTTAAACCCTTA
Found at i:4162095 original size:611 final size:611
Alignment explanation
Indices: 4158701--4169457 Score: 14184
Period size: 612 Copynumber: 17.6 Consensus size: 611
4158691 TAATTCCTTA
* * *
4158701 AAGAAAAGTTTTGTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * * * *
4158766 TGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCATCGTAAACACGTTATCATC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTT-
* * * * * * ***
4158830 GGATGCATAATATTGTTGCACTGGTAATGCAAGAAATGTTTTTCTTGCCCCTTAAACCCTTAAAG
130 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* * *
4158895 CAAAGTTCATTTGTCAAAAAACACAAAAAAGGATTCTTGTAAAAATCTCCATCATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
*
4158960 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCACAAGAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
* * * * *
4159025 GCTTTTTTTTCCCCTACC-TTTTCAAATACAAATTTTGTCCCTTA-AAAGAGGCAAACATGAATT
325 GCTTTTCTTTCCACTACCTTTTTAAAAT-CAAAGTTTGTCCCTTACAAAGA--CAAAGATGAATT
* * * *
4159088 CTTGTAATGATCTCCAAAAGCACATTTTATTCATTGGGATACATGATATTGATGTTTTTATTATA
387 CTTATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAA
* *
4159153 TAAGAAAAGCTTTCCTCG-CA-GCAATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAA
452 TAAGAAAAGCTTTTCTTGCCATG--ATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAA
* * * ** *
4159216 AAATGGATTCATATAA-AATCTTCATTCTTTTGATGTTTAGGCAACCAAAACACA--CTCTTTAT
515 ACATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTAT
* * * * *
4159278 TGGGATAAACGATATTAATGCTTTGATTTCAA
580 TGGAATACATGATGTTAATGCTTTGATTTCAT
** ** * * *
4159310 AAGAAAAGTTTTTTTCTCTTCTGTTTTTCTTAGAATCAAAGTTTACACCTTAAAT-ATGGAAAAC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGA-GGTAAAC
* * ** **
4159374 ATGGATTTACACAATAATATTCGTTCTTTCTGTGATTGGGCACCATAAACATATTATTCTT-ATT
65 ATGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTA-TCTTCATT
* * * * *
4159438 AGGATGCACAATATTGACGAATTGGTTATGCAAGAAAAGATTTTCTTGCCACTTAATTCCTTAAA
129 TGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAA
*
4159503 GCAAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATT
194 GCAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATT
* * * *
4159568 AGGTAGCCAAAACACGCTCTTTTCATTGGAATGCCTGATATTAATACTTTGATTTTCACAAGAAA
259 AGGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAA
*
4159633 TGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTG-CCCTTCAATAAAGACAAAGATGAATT
324 TGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTT--ACAAAGACAAAGATGAATT
* * *
4159697 CTTATAATGATCTCTAAAAACAAATTCTATTCATTGGGATACATGATATTGATGTTTTGATTAAA
387 CTTATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAA
* * *
4159762 TAAGAAAAGCTTTTCTTGCCACT-ATTTTCC-TATCAATTTAAGTTCATATCTCAAATGAAACAA
452 TAAGAAAAGCTTTTCTTGCCA-TGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAA
*
4159825 ACATGGATTCTTATAACAATCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTCCTTAT
515 ACATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTAT
4159890 TAGG-ATACATGA-GATTAATGCTTTGATTTCAT
580 T-GGAATACATGATG-TTAATGCTTTGATTTCAT
* * * * *
4159922 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAGAGTGTATACCTTAAATGAGGTAAACC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * *
4159987 TGGATTTACGCAACAATCTTTGTTATTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTT-
* * * * * *
4160051 GGATACACAATATTGACGAATTGGTTATGCAAGAAAAGATTTTCTTGCCACTTAATTCCTCAAAG
130 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* *
4160116 CAAAGTTCATTCATCAAAAAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
* * * *
4160181 GGTAGCCAAAACACGCTCTCTTCAATGGGATGCATGATATTGATGCTTTGATTTTCGCAATAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
4160246 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAAGAGACAAAGATGAATTCT
325 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAA-AGACAAAGATGAATTCT
* ** * * * * *
4160311 CATAATGATCTAGAAAAACACATTCTATTTATTGGGATACATGATAGTGATATTTTGATTAAGTA
389 TATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATA
* * * *
4160376 AGAAAAGCTTTTATTGCCATGATTTTCCTTATAATTTGAGTTCATATTTCAAATGAAAGAAACAT
454 AGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT
* * * *
4160441 GGATTCTTATAATAATCTTCAATC-GTT--T--TTAGGCAACCAAAACACGTTCTCCTTATTGGA
519 GGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGGA
4160501 ATACATGATGTTAATGCTTTGATTTCAT
584 ATACATGATGTTAATGCTTTGATTTCAT
* ** * * *
4160529 AAGAGAAGTTTTTTTCTCCACTGTTTTCCTTAGAATCAAAGTTTATACCATAAATAAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * ** ** *
4160594 TGGATATGCATAGTAATCTTCAATCTTTCAATGATTGGGCACCGCAAACACTTTATCTTCATTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * *
4160659 GATACACAATATTGATGCATTAGTTATGCAAGAAAAGTTTTTCTTTCCATTTATTTCCTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
* *
4160724 AAAGTTCATTTGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
* * * * *
4160789 GTGGCCAAAACACGCTCTTTTCATTGGAATGCATGATATTAATACTTTGATTTTCACAGGAAATG
261 GTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAATG
* *
4160854 CTTTTCTTTCCGCTACCTTTTTAAAATCAAAGTTTGTCCCTCTATAAAGACAAAGATGAATTCTT
326 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATTCTT
*
4160919 ATAATGATCTCCAAAAACAAATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
390 ATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
* *
4160984 -AAGAAGCTTTTCTTGCCATTATTTTGC-TATCAATTTGAGTTCGTATGTCAAATGAAACAAACA
455 GAA-AAGCTTTTCTTGCCATGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAAACA
*
4161047 TGGATTCTTATAACAATCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTCCTTATTAG
518 TGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATT-G
4161112 G-ATACATGA-GATTAATGCTTTGATTTCAT
582 GAATACATGATG-TTAATGCTTTGATTTCAT
* * * * *
4161141 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAGAGTGTATACCTTAAATGAGGTAAACC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * *
4161206 TGGATTTACACAATAATCTTTGTTATTTCAATGATTGGCCACCATAAACACGTTATCTTC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * *
4161270 GTATACACAATATTGATGAATTGGTTATGCAAGAAAAGATTTTCTTGCCACTTAATTCCTTAAAG
131 G-ATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* * *
4161335 CAAAGTTCATTCATCAAATAACACAGAAAAGAATTCTTGTAAAAATCTCCATTATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
* * * * *
4161400 GGTAGCCAAAACACGCTCTCTTCAATGGGACGCATGATATTGATGCTTTGATTTTCGCAATAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
* *
4161465 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCATACAAGAGACAAAGAGGAATTCT
325 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAA-AGACAAAGATGAATTCT
* ** * * * * *
4161530 CATAATGATCTAGAAAAACACATTCTATTTATTGGGATACATGATATTGATATTTTGAATAAGTA
389 TATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATA
* * * *
4161595 AGAAAAGCTTTTATTGCCATGATTTTCCTTATAATTTGAGTTCATATTTCAAATGAAAGAAACAT
454 AGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT
* * * * *
4161660 GGATTCTTATAATAATCTTCAATCGTTTCATAATTAGGCAACCAAAACACGTTCTCTTTATTGGA
519 GGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGGA
4161725 ATACATGATGTTAATGCTTTGATTTCAT
584 ATACATGATGTTAATGCTTTGATTTCAT
* * * * * *
4161753 AAGAGAAG-TTTTTTCTCCACCGTTTTCCTTAGAATCAAACTTTATACCATAAATAAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * * *
4161817 TGGATATGCATAGTAATCTTCATTCTTTCAATGATTGGGCACCACAAACACGCTATCTTCATTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * *
4161882 GATACACAATATTGATGCATTAGTTATGCAAGAAAAGTTTTTC-TGTCCATTTATTTCCTTAAAG
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTG-CCACTTATTTCCTTAAAG
* *
4161946 CAAAGTTCATTTGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
* * * * * *
4162011 GGTGGCCAAAACAAGCTCTTTTCATTGGAATGCATGATATTAATACTCTGATTTTCACAAGAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
*
4162076 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTCTATAAAGACAAAGATGAATTCT
325 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATTCT
* *
4162141 TATAATGATCTCCAAAAACAAATTTTATTCATTGGGATACATGATGTTGATGTTTTGATTAAATA
389 TATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATA
* *
4162206 A-AAGAAGCTTTTCTTGCCATTATTTTCC-TATCAATTTGAGTTTGTATGTCAAATGAAACAAAC
454 AGAA-AAGCTTTTCTTGCCATGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAAAC
4162269 ATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTA
517 ATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATT-
4162334 GG-ATACATGA-GATTAATGCTTTGATTTCAT
581 GGAATACATGATG-TTAATGCTTTGATTTCAT
* * * * * *
4162364 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAGAGTGTATACCTAAAATGAGGTAAACC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * *
4162429 TGGATTTACACAATAATCCTCATTATTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * * * * *
4162493 GTATACACAATATTG-GGAATTCGTTATGCAAGAAAAGATTTTCTTGCCGCTTAATTCCTTAAAG
131 G-ATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
*
4162557 CAAAGTTCATTCATCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
* * * * * * *
4162622 GGTAGCCAAAACATGTTCTCTTCAATGGG-TGCATGATATTGATGCTTTTATTTTCGCAATAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
4162686 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAAGAGACAAAGATGAATTCT
325 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAA-AGACAAAGATGAATTCT
* ** * * * * *
4162751 CATAATGATCTAGAAAAACACATTCTATTTATTGGGATACATGATAGTGATATTTTGATTAAGTA
389 TATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATA
* * * * *
4162816 AGAAAAGCTTTTATTGCAATGATTTTCCTTATAATTTGAGTTCATATTTCAAATGAAAGAAACAT
454 AGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT
* * * *
4162881 GGATTCTTATAATAATCTTCAATC-GTT--T--TTAGGCAACCAAAACACGTTCTCCTTATTGGA
519 GGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGGA
4162941 ATACATGATGTTAATGCTTTGATTTCAT
584 ATACATGATGTTAATGCTTTGATTTCAT
* * * * * *
4162969 AAGAGAAGTTTTTTTCTCCACCGTTTGCCTTAGAATCAAAGTTTATACCATAAATAAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * *
4163034 TGGATATGCATAGTAATCTTCATTCTTTCAATGATTGGGCACCACAAACACGTTATCTTCATTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * *
4163099 GATGCACAATATTGATGCATTAGTTATGCAAGAAATGTTTTTCTTTCCATTTATTTCCTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
*
4163164 AAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
* * * * *
4163229 GTGGCCAAAACAAGCTCTTTTCATTGGAATGCATGATATTAATACTTTGATTTTCACAAGAAATG
261 GTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAATG
*
4163294 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTCTATAAAGACAAAGATGAATTCTT
326 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATTCTT
*
4163359 ATAATGATCTCCAAAAACAAATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
390 ATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
* *
4163424 -AAGAAGCTTTTCTTGCCATTATTTTCC-TATCAATTTGAGTTCGTATGGCAAATGAAACAAACA
455 GAA-AAGCTTTTCTTGCCATGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAAACA
* *
4163487 TGGATTCTTATAACAATCTTCATTCTTTTCACAATTAGGCAACCAAAACAGATTCTCCTTATTAG
518 TGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATT-G
* *
4163552 G-ATACATGA-GATTATTGCTTTTATTTCAT
582 GAATACATGATG-TTAATGCTTTGATTTCAT
* * * * *
4163581 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAGAGTGTATACCTTAAATGAGGTAAACC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * *
4163646 TGGATTTACACAATAATCTTTGTTATTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * *
4163710 GTATACACAATATTGA-GAATTGGTTATGCAAGAAAAGATTTTCTTGCCACTTAATTCCTTAAAG
131 G-ATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
*
4163774 CAAAGTTCATTCATCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
* * * *
4163839 GGTAGCCAAAACACGTTCTTTTCAATGGGATGCATGATATTGATGCTTTGATTTTCGCAATAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
4163904 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAAGAGACAAAGATGAATTCT
325 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAA-AGACAAAGATGAATTCT
* ** * * * * *
4163969 CATAATGATCTAGAAAAAGACATTCTATTTATTGGGATACATGATATTGATATTTTGATTAAGTA
389 TATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATA
* * * *
4164034 AGAAAAGCTTTTATTGCCATGATTTTCCTTATAATTTGAGTTCATATTTCAAATGAAAGAAACAT
454 AGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT
* * * *
4164099 GGATTCTTATAATAATCTTCAATCGTTTCATAATTAGGCAACCAAAACACGTTCTCCTTATTGGA
519 GGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGGA
4164164 ATACATGATGTTAATGCTTTGATTTCAT
584 ATACATGATGTTAATGCTTTGATTTCAT
* * * * * *
4164192 AAGAGAATTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCATAAATAAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * *
4164257 TGGATATGCATAGTAATCTTCATTCTTTCAATGATTGGGCACCACAAACACGTTATCTTCATTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * *
4164322 GATGCACAATATTGATGCATTAGTTATGCAAGAAATGTTTTTCTTTCCATTTATTTCCTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
*
4164387 AAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
* * *
4164452 GTAGCCAAAACACGCTCTTTTCATTGGAATGCATGATATTAATACTTTGATTTTCACAAGAAATG
261 GTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAATG
* * *
4164517 TTTTTCTTTCCTCTACCTTTTTAAAATCAAAGTTTGTCCCTCTATAAAGACAAAGATGAATTCTT
326 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATTCTT
* *
4164582 ATAATGATCTCCAAAAACAAATTTTATTCATTGGGACACATGATATTGATGTTTTGATTAAATAA
390 ATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
* *
4164647 -AAGAAGCTTTTCTTGCCATTATTTTCC-TATCAATTTGAGTTCGTATGGCAAATGAAACAAACA
455 GAA-AAGCTTTTCTTGCCATGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAAACA
*
4164710 TGGATTCTTATAACAATCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTCCTTATTAG
518 TGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATT-G
4164775 G-ATACATGA-GATTAATGCTTTGATTTCAT
582 GAATACATGATG-TTAATGCTTTGATTTCAT
* * * * *
4164804 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAGAGTGTATACCTTAAATGAGGTAAACC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * *
4164869 TGGATTTACACAATAACCTTCGTTATTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * *
4164933 GTATACACAATATTGA--CAATTGGTTATGCAAGAAAAGATTTTCTTGCCACTTAATTCCTTAAA
131 G-ATGCACAATATTGATGC-ATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAA
*
4164996 GCAAAGTTCATTCATCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATT
194 GCAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATT
* * * * *
4165061 AGGTAGCCAAAACACGTTCTCTTCAATGGGATGCATGATATTGATGCTTTGATTTTCGCAATAAA
259 AGGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAA
4165126 TGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAAGAGACAAAGATGAATTC
324 TGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAA-AGACAAAGATGAATTC
* ** * * * * * *
4165191 TCATAATGATCTAGAAAAACACATTCTGTTTATTGGGATACATAATATTGATATTTTGATTAAGT
388 TTATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAAT
* * * * * *
4165256 AAGAAAAGCTTTTATTTCCATGATATTCCTTATAATTTGAGTTCATATTTCAAATGAAAGAAACA
453 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* * * *
4165321 TGGATTCTTATAATAATCTTCAATCGTTTCATAATTAGGCAACCAAAACACGTTCTCCTTATTGG
518 TGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGG
*
4165386 AATACATGATGTTAATGCTTTGATTTCGT
583 AATACATGATGTTAATGCTTTGATTTCAT
* * * * * *
4165415 AAGAGAAGTTTTTTTCTCCACCGTTTTCCTTATAATCAAAGTTTATACCATAAATAAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * * *
4165480 TGGATATGCATAGTAATCCTCATTCTTTCAATGATTGGGCACCACAAACACGTTATCTTCATTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * * *
4165545 GATGCACAATATTGATGCATTAGTTATGCAAGAAATGTCTTTCTTTCCATTTATTTCCTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
* *
4165610 AAAGTTCATTTGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
** * *
4165675 GTAGCCAAAACACGCTCTTTTCATTGAAATGCATGATATTAATACTTTGATTTTCACAAGAAATG
261 GTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAATG
*
4165740 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTCTATAAAGACAAAGATGAATTCTT
326 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATTCTT
*
4165805 ATAATGATCTCCAAAAACAAATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
390 ATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
*
4165870 -AAGAAGCTTTTCTTGCCATTATTTTCC-TATCAATTTGAGTTCGTATGTCAAATGAAACAAACA
455 GAA-AAGCTTTTCTTGCCATGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAAACA
* *
4165933 TGGATTCTTATAACAATCTTCATTCTTTTCACAATTAGGCAACCAAAGCACATTCTCCTTATTAG
518 TGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATT-G
4165998 G-ATACATGA-GATTAATGCTTTGATTTCAT
582 GAATACATGATG-TTAATGCTTTGATTTCAT
* * * * *
4166027 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAGAGTGTATACCTTAAATGAGGTAAACC
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * *
4166092 TGGATTTACACAATACTCTTCGTTATTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * * * * * *
4166156 GTATACACAATATTGA-GAATTGGTTATGCAAGAAAAGATTTTCTCGCTACTTAATTCCTAAAAG
131 G-ATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* *
4166220 CAAAGTTCAGTCATCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTA
* * * * * *
4166285 GGTAGCCAAAACACGTTCTCTTCAATGGGATGCATGATATTGATGCTTTGATTTTCGTAATAAAT
260 GGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAAT
*
4166350 GCTTTTCTTTTCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAAGAGACAAAGATGAATTCT
325 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAA-AGACAAAGATGAATTCT
* ** * * * * *
4166415 CATAATGATCTAGAAAAAGACATTCTATTTATTGGGATACATGATATTGATATTTTGATTAAGTA
389 TATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATA
* * * *
4166480 AGAAAAGCTTTTATTGCCATGATTTTCCTTATAATTTGAGTTCATATTTCAAATGAAAGAAACAT
454 AGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACAT
* * * *
4166545 GGATTCTTATAATAATCTTCAATCGTTTCATAATTAGGCAACCAAAACACGTTCTCCTTATTGGA
519 GGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGGA
4166610 ATACATGATGTTAATGCTTTGATTTCAT
584 ATACATGATGTTAATGCTTTGATTTCAT
* * * *
4166638 AAGAGAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCATAAATAAGGCAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * * *
4166703 TGGATATGCATAGTAATCTTCATTCTTTCAATGATTGGGCACCACAAACACGTTATCTTCATTTG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * *
4166768 GATGCACAATATTGATGCATTAGTTATGCAAGAAAAGTTTTTCTTTCCATTTATTTCCTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
* * *
4166833 AAAGTTCATTTGTCAAATAAGACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTTATTAG
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
* * * *
4166898 GTAGCCAAAACACGCTCTTTTCATTGGAATGCATGATATTAATACGTTGATTTTCACAAGAAATG
261 GTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAATG
* *
4166963 CTCTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTCTATAAAGACAAAGATGAATTCTT
326 CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATTCTT
*
4167028 ATAATGATCTCCAAAAACAAATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
390 ATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAA
*
4167093 -AAGAAGCTTTTCTTGCCATTATTTTCC-TATCAATTTGAGTTCGTATGTCAAATGAAACAAACA
455 GAA-AAGCTTTTCTTGCCATGATTTTCCTTAT-AATTTGAGTTCGTATGTCAAATGAAACAAACA
* * * *
4167156 TGGATTCTTATAACAATCTTCATTCTTTTCACAATTAGGCAACCAAAACGCATTCTCCATATT-A
518 TGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGG
*
4167220 AGATACACGA-GATTAATGCTTTGATTTCAT
583 A-ATACATGATG-TTAATGCTTTGATTTCAT
* * * * *
4167250 AAGAAAAGTTTTTTTCTCCATCATTTTCCTTAGGATCAAAGTGTATACCTTAAATGAGGCAAACT
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * ** *
4167315 TGGATTTACACAATAATCTTCGTTCTTTCAAAGATTGGGCACCATAAACACGTTATCTTTGTTGG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* * ** * * * *
4167380 GATGCATAATATTGATGTATTGGCAATGTAAGAAAAGGTTTTCTTGCCCCTTATTTCTTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
* * ** * * * * *
4167445 AAAGTTCATTTGTCAAATAATATGAAAATGGATTCTTGTAATAGTCTTCACTTTTTTTTGTGATT
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATC-TC-CATTATTTTGTGATT
* * * * * * *
4167510 A-GTCAGCCAAAACATGCTCTCTTCTTTGGGATGCAAGATATTGATGCTTTGATTTTTGTAAGAA
259 AGGT-AGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAA
* * * * * * *
4167574 ATGGTCTTCTTTCCATTGCCTTTTTAAAAACAAAGTTTGTCCCTTAAAAAAGAGAAAGATGAATT
323 ATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTT-ACAAAGACAAAGATGAATT
* * * *
4167639 CTTATAATGATCTCCAAAAACACATTCTATTCATTGGGATTCATGATATTGATATTTTGATTATA
387 CTTATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAA
* * *
4167704 TAAAAAAAGCTTTTC-TGACCATGATTTTCCTTATAATTTGAGTTTGTATTTCAAATGAAACAAC
452 TAAGAAAAGCTTTTCTTG-CCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAA-
** * * * *
4167768 ACATGGATTCTTATAGTAATCTTAATTCTTTTCATGATTAGGCAACTAAAACACATTCTTCTTAT
515 ACATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTAT
*
4167833 TAGGATATAC--GATATTAATGCTTTGATTTCAT
580 T-GGA-ATACATGATGTTAATGCTTTGATTTCAT
** * *
4167865 AAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAATCAAAATTTATACCTTAAATGAGGTAAACT
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * *
4167930 TGGATTTACACAATAATC-TCTGTTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTA
66 TGGATATACACAATAATCTTC-GTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTT
* * * * *
4167994 GAATGCACAATAATAATGCATTGGTAATGCAAGAAAAGTTTTTCTTGCCA-TATTTTTCCTTAAA
130 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACT-TATTTCCTTAAA
* * * * * *
4168058 GGAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTACACTT-TTTTTTGAT
194 GCAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCA-TTATTTTGTGAT
* * * * *
4168122 TTGGCAGCGAAAACACGCTCTCTTCGTTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAA
258 TAGGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAA
* * * * * *
4168187 ATGGTCTTCTTTCCACTACCTTTTGAAAATCAAAGTTTGTCCCTCAATAAAAACAAAGATGAATT
323 ATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCT-TACAAAGACAAAGATGAATT
* * * *
4168252 CTCATAATTATCTCTAAAAACACATTTTATTCATTGGGATACATGATATTAATGTTTTGATTAAA
387 CTTATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAA
* *
4168317 TAAGAAAAGCTTTTCTTGCCACT-ATTTTCCTAACAATTTGAGTTCGTAT-TGCAAATGAAACAA
452 TAAGAAAAGCTTTTCTTGCCA-TGATTTTCCTTATAATTTGAGTTCGTATGT-CAAATGAAACAA
* ** * * ** ** *
4168380 GCATGGATTCTTATAGTAATTTTTATTCTTTTTGTGGTTAGGCAACCAAAACACATTCTTCTTAT
515 ACATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTAT
* * * *
4168445 TGGGATATACGATATTAATGCTTTGATTTCAT
580 TGGAATACATGATGTTAATGCTTTGATTTCAT
** *
4168477 AAGAAAAGTTTTTTTCTCCACGGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACT
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* ** * * *
4168542 TGGATTTACGGAATAATCTCCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCAATAG
66 TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
* *
4168607 GATGCACAATATTAATGCATTGGTAATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
131 GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
* * ** * * * *
4168672 AAAGTTCATTCGTCGAATAATACAAAATTGGATTATTGTAATAATCTACACTTTTTTTTTTGTGA
196 AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCT-C-C--ATTATTTTGTGA
* * * * * * * *
4168737 TTTGGTAGCGAAAACACTCTCTCTTCCTTGGGATGCATGATATTGATGCTTTAATTTTCGTAAGA
257 TTAGGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGA
* * ** *
4168802 AATGGTCTTCTTTCCA-TCACCTTTTTAAAATCAAAGTTTGTTCCCCAATAAAGACAAAGATGAA
322 AATGCTTTTCTTTCCACT-ACCTTTTTAAAATCAAAGTTTG-TCCCTTACAAAGACAAAGATGAA
* * * * * * * *
4168866 TTCTCATAATTAACTCAAAAAAAACATTTTATTCCTTGAGATACATGATATTGATGGTTTGATTA
385 TTCTTATAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTA
* ** * *
4168931 AATAAGAATAGCTTTTCTTGCCACT-ATTTTTGTAACAATTTGAGTTCGTATGTCAAATGAAACA
450 AATAAGAAAAGCTTTTCTTGCCA-TGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACA
* * * * *
4168995 AACATGGATTCTTATAACAATGTTCATTCTTTTCACAATTAAGCAACCAAAACATATTCTCCATA
514 AACATGGATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTA
* *
4169060 TTAGG-ATACA-CAAGATTAATGCTTTGATTTCAT
579 TT-GGAATACATGATG-TTAATGCTTTGATTTCAT
* * * *
4169093 AAAAAAAGTTTTTTTCTCCATCATTTTCCTTAGAATCAAAATGTATACCTTAAATGAGGTAAACA
1 AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
* * * *
4169158 TGGATTTACGCAATAATC-TCTGTTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATTG
66 TGGATATACACAATAATCTTC-GTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTT
* * * * * *
4169222 GGATGCACGATATTAATGCATT-GTAATGGAAGAAAAGTTTTTCTTGCCCCTTATTTCCTTAAAA
130 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* * * * * * * * *
4169286 CAAATTTCATTTGTCAAATAATACAAAAATGGATACTTTTAATAATCTACA-TAGTTTTCTATGA
195 CAAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTA--TTT-TGTGA
* * * * * * * * *
4169350 TTTGGCAGCGAAAACACGCTTTTTTCCTTAGGATGCGTGATATTGATACTTTGATTTTTGCAAAA
257 TTAGGTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGA
* * *
4169415 AATGGTCTTCTTTCCACTACCTTTTCAAAATCAAAGTTTGTCC
322 AATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCC
4169458 ACCATTTTTC
Statistics
Matches: 8925, Mismatches: 1074, Indels: 295
0.87 0.10 0.03
Matches are distributed among these distances:
604 2 0.00
605 172 0.02
606 144 0.02
607 736 0.08
608 25 0.00
609 440 0.05
610 297 0.03
611 2289 0.26
612 3373 0.38
613 371 0.04
614 241 0.03
615 375 0.04
616 448 0.05
617 12 0.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (611 bp):
AAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGTAAACA
TGGATATACACAATAATCTTCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTTG
GATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGC
AAAGTTCATTCGTCAAATAACACAAAAAAGGATTCTTGTAAAAATCTCCATTATTTTGTGATTAG
GTAGCCAAAACACGCTCTTTTCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAATG
CTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTACAAAGACAAAGATGAATTCTTA
TAATGATCTCCAAAAACACATTTTATTCATTGGGATACATGATATTGATGTTTTGATTAAATAAG
AAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGG
ATTCTTATAACAATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTTATTGGAAT
ACATGATGTTAATGCTTTGATTTCAT
Found at i:4172002 original size:612 final size:612
Alignment explanation
Indices: 4169455--4177042 Score: 7852
Period size: 610 Copynumber: 12.5 Consensus size: 612
4169445 TCAAAGTTTG
* * * ** * *
4169455 TCCACCATTTTTCTTAGAATCAAAGTTTATACCTTAACTGAGATGAACATGGATTTATGCAACAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* ** * * *
4169520 TCTCCTTTCTTTCAATGATTGGGCATGATAAACACGTTATCTTCTTTGGGATGCACAATATTAAT
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * *
4169585 GCATTGGTTATGCAAGAAAAGTTTTTTTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATAAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* * ** *
4169650 ATACGACAAAAA-AGGATTCTTCTAATAATCTCCATTATTTTT-TGATTAGGTACCCAAAACACG
196 ATAAGACAAAAATA-GATTCTTGTAATAATCTCCATT-TTTTTGTGATTAGACAGCCAAAACACG
* * * * *
4169713 CTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAAAAATGCTTTTGTTTCTACT
259 CTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACT
* *
4169778 ACCTTTTTAAAACCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTCC-A
324 ACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAA
* * **
4169842 AAACACATTATATTCATTAGGATATGTGATATTGATGTTTTGATTATGA-AAGAAAAGCTTTTCT
389 AAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTAT-ATAAGAAAAGCTTTTCT
* * * * *
4169906 CT-CCACGATTTTACTTATAATTTGAGCTCGTTTGTCAAATGCAACAAAAATGGATTCTTATAAT
453 -TGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAAT
* * *
4169970 AATCTTTATTCTTTTCATGATTAGGCAACCAAAACA-AGTT-TTCTTCATT-GG------GATAT
517 AATCTTCATTCTTTCCATGATTAGGCAACCAAAACACA-TTCTCCTT-ATTGGGATACACGATAT
* *
4170026 TAATGCTTTGATTTCATAAAAAAAGTGTTTTTC
580 TAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* *
4170059 TCTACCGTTTTCCTTAGAATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * * * *
4170124 TCTCCATTCTTTTAATGATTGGGCACCATAAAAATGTTATCTTCATTGGGATGAACAATATTAAC
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * * * *
4170189 AAATTAGTTATGCAAGAAAAGTTTTACTTGCCACTTATTTCCTTGAAGCAAAGTTCATTCGTCAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* * * *
4170254 ATAAGACAAAAA-AGGATTCTTGTAACAATCTCC-TTTTTTTGTGATTAGGCAGCCGAAACACAC
196 ATAAGACAAAAATA-GATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGC
* * * *
4170317 TCTCTTGCTTGGGGTGCATGATATTGATGCTTTGATTTTTGCAAGAAATGCCTTTCTTT-AACTA
260 TCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACTA
* * *
4170381 GCTTTTTAAAATAAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCTTAATCATCTCCAAA
325 CCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAA
** * * *
4170446 AACACATTCTATTGTTTGGGATACATGATATTAATGCTTTGATCATATAAGAAAAGCTTTTCTTG
390 AACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTG
*
4170511 CCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAAT
455 CCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAATAAT
* * * * *
4170576 CTTCATTCTTTCCTTGTTTAGGCAACCAAAACACATTCTCCTTATTGGGATGCATGATGTTAATG
520 CTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATG
4170641 CTTTGATTTCATAAGAAAAG-TTTTTTC
585 CTTTGATTTCATAAGAAAAGTTTTTTTC
* ** * ** * * * * *
4170668 CCCTGCATTTTCCTTAGAATCAAAGTTTATAAATTAAATGAGGCAAACATAGATTTATGCAGTAG
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
** * * * * *
4170733 TCTTTATTCTTTCAATGATTGAGCCCCATAAACACGTTATCTTCATTGGGAAGCATAGTATTGAC
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* *
4170798 GCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAATGCAAA-TTCATTCATCAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* * * * *
4170862 ATATGACAAAAATAGATTCCTGTAATAATCTCTA-TTTTTT-T-ATTAGGCAGCCAAAACAAGCT
196 ATAAGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGCT
* ** * *
4170924 CTCTTCCTTAGGATGCATGATATTGATGCTTTGATTTTCGTGAGAAATGCTTTTCTTTC-ATTGG
261 CTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACT-A
** * * ** * * * *
4170988 GATATATT-ATATTGACGTTTGCCCCTTAAAAGAGTCAAAGATGAATTCTCATAATGATCTCC-A
325 CCT-TTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAA
* * * * * *
4171051 AAACACATTCTATTCATTGGGATATATTATATTGACGTTTTGTTTAAATAAGAAAAGCTTTTCTC
389 AAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTT
* * * * *
4171116 GTCACGATTTTTCTTTTAATTTGAGTTCGTATGTCAAATG-AA-AATAATGGATT-TTGATAATA
454 GCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTT-ATAATA
* * * * *
4171178 ATCTTCATTCTTTTCATGACT-GGTCAACCAAAACACATTTTCCTTATTAGGATACACGATATTC
518 ATCTTCATTCTTTCCATGATTAGG-CAACCAAAACACATTCTCCTTATTGGGATACACGATATTA
** *
4171242 ACACTTTGGTTTCATAAGAAAAGTTTTTTTTC
582 ATGCTTTGATTTCATAAGAAAAG-TTTTTTTC
* * * *
4171274 TCCACCATTTTTCTTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGGATTTACCCAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * * *
4171339 TCTACATTCTTTCAATGGTTGGGCACCATAAACACATTATCTTCATTGGGATGCACAATATTGAT
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * ** *
4171404 GAATTGGTTATGCAAGAAAAGTTTTTCCTGCCACTTATTTCCTTAAAGCAAAGCTCGCTCATAAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* *
4171469 ATACA-ACAAAAATAGATTCTTGCAATAATCTCCATTTTTTTGTGATTAGACAGCTAAAACACGC
196 ATA-AGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGC
* * *
4171533 TCTCTTCCCTGGGATGCATGATATTGATGCTTTGAATTTCGCAAGAAATGCTTTTCTTTCTACTA
260 TCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACTA
* *
4171598 CCTTTTTAAAATTAAAGTTTGTCACTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAA
325 CCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAA
*
4171663 AACACATTCTATTCATTGGGATACATGATATTGATGTTTTCATTATATAAGAAAAGCTTTTCTTG
390 AACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTG
* * * *
4171728 CCACGATTTTCCTTATAATTTGAGTTCGTAAGTCAAATGAAACAAAAAAGGATTCTTATAACAAT
455 CCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAATAAT
* * * * * *
4171793 CTTTATTCTTTTCATAATTAGGCAACCAAAACACTTTCTCCTTATTAGGATACACAATATTAATG
520 CTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATG
4171858 CTTTGATTTCATAAGAAAAGTTTTTTTC
585 CTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * *
4171886 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCCTAAATAAGGCAAACATGGATATACACAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * * **
4171951 TCTTCGTTCTTTCAATGATTGGGCACCATAAACGCGTTATCTTTTTTGGGATGCACAATATTGAC
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * *
4172016 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTTAAGAAAAGTTCATTCGTCAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* * * *
4172081 ACAAGACAAAAA-AGGATTCTTGTAATAATCTCC-TTTTTTTGTGATTACACAGTCGAAACACGC
196 ATAAGACAAAAATA-GATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGC
* * *
4172144 TCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTTGCAAGAAATGCCTTTCTCT-AACTA
260 TCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACTA
* * * * *
4172208 CCTTTTTAAAATCAAAGTTTATCCATTAAAAGAGACAAAGATGAATTCTCTTAATCAACTCCAGA
325 CCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAA
* ** * * *
4172273 AACACATTCTACTGTTTGGGATACATGATATTGATGCTTTAATCATATAAGAAAAGCTTTTCTTG
390 AACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTG
*
4172338 CCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAAT
455 CCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAATAAT
* *
4172403 CTTCATTCTTTCC-TTATTTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATGTTAAT
520 CTTCATTCTTTCCATGA-TTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAAT
*
4172467 ACTTTGATTTCATAAGAAAAGTTTTTTTC
584 GCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * * * *
4172496 CCCAGCATTTTCCTTAGAATCAAAGTTTATACATTAAATGAGGCAAACATAGATTTATGCAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* ** * * * * *
4172561 TCACCATTCTTTCAATGATTAAGCCCCATAAACACGTTACCTTCATTGGGAAGCATAGTATTGAC
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* ** ** * *
4172626 GCATTGGTTATGCAAGAAAAGTTTTTCAAGCCACTT-TTTCCTTATTGCAAA-TTCACTCGTCAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* * ** *
4172689 ATAAGACAAAAATAAATTCTTGTAACAATCT-C-TTTTTTT-T-ATTAGGTAGCCAAAACAAGCT
196 ATAAGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGCT
* * **** *
4172750 CTCTTCCTTAGGATGCATGATATTGATGCTATGATTTTCATGTGAAATGCTTTTCTTTCCACTAC
261 CTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACTAC
* * *
4172815 CATTTTAAAATCAAAGTTT-TCCCCTTAAAAGAGACAAAGATGAATTCTCGTAATGATCTCCAAA
326 CTTTTTAAAATCAAAGTTTGT-CCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAA
* *
4172879 AACACATTCTATTCGTTGGGATACATGATATTGACGTTTTGATTATATAAGAAAAGCTTTTCTCT
390 AACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCT-T
* * * * * *
4172944 -CCACGATTTTTCTTTTAATTTGAGTTCATATATCAAATG-AA-AAAAATGGATTTTTATAATAA
454 GCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAATAA
* ** * * ** *
4173006 TCTTCATTCTTTTCATGATTAGGCAACCAAAACATGTTTTCCTCATTGGGATACATTATATTAAC
519 TCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAAT
*
4173071 ACTTTGATTTCATAAGAAAAGTTTTTTTC
584 GCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * *
4173100 TCCACCG-TTT-CTTAGAATTAAAATTTATACTTTAATTGAGACAAACATGGATTTACCCAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * * * * * *
4173163 TCTACATTCTTTAAATGGTTAGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTAAT
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * * *
4173228 GAATTGGTTATGCAAGACAGGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCGTTCATAAA
131 GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
* * * * * *
4173293 ATATGACAAAAAAAGATTCTTGCAGTAATCTCCATTTTTTTTTGTGATTAGATAGTCAAAACACG
196 ATAAGACAAAAATAGATTCTTGTAATAATCTCCA--TTTTTTTGTGATTAGACAGCCAAAACACG
* * * *
4173358 CTCTCTTCCATGGGATCCATGATATTGATGCTTTGATTTTTGCAAGAAATGCCTTTCTTT-AACT
259 CTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACT
* * * * *
4173422 GCCTTTTTAAAATCTAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCTTAATCAACTCAAA
324 ACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAA
* * ** * *
4173487 AAACATATTCTACTGTTTGGGATACATGATATTGATGCTTTGATCATATAAGAAAAGCTTTTCTT
389 AAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTT
*
4173552 GCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAA
454 GCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAATAA
* * * *
4173617 TCTTCATTCCTTCC-TTATTTAGGCAACCAAAACACATTCTCCTTATTGGGATACAGGATTTTAA
519 TCTTCATTCTTTCCATGA-TTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAA
**
4173681 T-CTTTGATTTCATAAGAAAAGTTACTTTC
583 TGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * * *
4173710 -CCTAGCATTTTCCTTAGAATCAAAGTTTATACATTAAATGAGGCAAACATAGATTTATGCAATA
1 TCC-ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATA
* ** * * * * *
4173774 ATCACCATTCTTTCAATGATTAAGCCCCATAAACACATTATCTTCATTGGGAGGCATAGTATTGA
65 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* * * *
4173839 CGCATTGGTTATGCAAGAAAAGTTTTTCTTTCCACTT-TTTCCTTAATGCAAA-TTCATTCGTCA
130 CGAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCA
* * *
4173902 AATAAGACAAAAATAGATTCCTGTAATAATCTCC-TTTTTTT-TTATTA-AGCAGCCAAAACAAG
195 AATAAGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGA-CAGCCAAAACACG
* * **** * *
4173964 CTCTCTTCCTTAGGATGCAAGATATTGATGCTTTGATTTTCATGTGAAATGCTTTTATTTCCACT
259 CTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACT
* * *
4174029 ACCATTTTAAAATCAAAGTTT-TCCACGTAAAAGAGAC--AGATGAATTCTCATAATGATCTCCA
324 ACCTTTTTAAAATCAAAGTTTGTCC-CTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCA
* * *
4174091 AAAACACATTCTATTCGTTGGGATACATGATATTGATTTTTTGATTATATATGAAAAGCTTTTCT
388 AAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCT
* * * * *
4174156 CT-CCATGATTTTTCTTTTAATTTGAGTTCATATATCAAATG-AA-AAAAATGGATTTTTATAAT
453 -TGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAAT
** * * *
4174218 AATCTTCATTCTTTCCATGATTAGGCAACCAAAACATGTTTTCCTCATTGGGATACATGATATTA
517 AATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTA
**
4174283 ACACTTTGATTTCATAAGAAAAGTTTTTTTC
582 ATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * *
4174314 TCCACCGTTTTTCTTAGAATTAAAGTTTATACTTTAATTGAGACAAACATGGATTTACCCAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * *
4174379 TCTACATTCTTT-ATAT-AGTTAGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTG
66 TCTCCATTCTTTCA-ATGA-TTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * * *
4174442 ATGAATTGGTTATGCAAGAAAAGTTTTTCTTACCACTTATTTCCTTAAAGCAAAGTTCGTTCATA
129 ACGAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATC
* * * *
4174507 AAATACGACAAAAATAGATTCTTGCAATAATCTCCATTTTTTTTTTGTGATTAGATAGTCAAAAC
194 AAATAAGACAAAAATAGATTCTTGTAATAATCTCCA---TTTTTTTGTGATTAGACAGCCAAAAC
* * * * * *
4174572 ACGCTCTCTTCCATGGGATCCATGATATTGATTCTTTGATTTTTGCAAAAAATGCCTTTCTTT-A
256 ACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCA
* * *
4174636 ACTACCTTTTTAAAATCAAAGTTTTTTCCTTAAAAGAGACAAAGATGAATTCTCTTAATCATCTC
321 ACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTC
* * * *
4174701 CAAAAACACATTCTACT-ATTTAGGATACATGATATTGATGCTTTGATCATATAAGAAAAGCTTT
386 CAAAAACACATTCTATTCA-TTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTT
* *
4174765 TCTTGCCATAATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATA
450 TCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATA
* * *
4174830 ATAATCTTCATTCTTTCCTTGTTTAGGTAACCAAAACACATTCTCCTTATTGGGATACACGATAT
515 ATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATAT
* * * *
4174895 TAATGCTTTGGTTTTATAAGAGAAGTTTTTTGC
580 TAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * ** ** *
4174928 TGCACTGTTTTCCTTAGAATTAAAGTTTATACCTTAAATGAGACAAACATAAATTTACATAGTAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * * *
4174993 TC-CCTATTCTTTCAATGTTTGAGCACCATAAACACGTTATCTTCATTGGGATGCATAGTATTGA
66 TCTCC-ATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* * * * * *
4175057 TGCATTTGTTATGCAAGAAAAGTTTTTCTTACCACTTATTTCTTTAAAGCAAAGTTCGTTCATCA
130 CGAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCA
* * * * * ** **
4175122 AATAAGACAAAAA-AGGATACCTGAAAAAATCTCCATTATTTTGTGATTAGGTAGCCAAAACGTG
195 AATAAGACAAAAATA-GATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACG
** * * *
4175186 CTCTCTTTATTAGGATGCATGATATTGATGCTTCGATTTTCGTAAGAAATGCTTTTCTTTCCAA-
259 CTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTT-CAAC
* * * * *
4175250 TACCTCTTTAAAATCAATGTTTGTCCCTTCAAAGAGACAAAGATGAATTCTTATAATGATCTCCT
323 TACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCC-
*
4175315 AAAAA-ACATTCTATTCATTGGGATACATGATATTTATGTTTTGATTATATAAGAAAAGCTTTTC
387 AAAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTC
** * * * *
4175379 TCACCATAATTTTCCTTATAATTTGAGTTCATATGTCAAATGAAATAAAAATGCATTCTTATAAT
452 TTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAAT
* * * * * * *
4175444 AATCTTCATTATTTTCATGACTAGGGAACCAAAACACATTCTCCTTCTTTGGAGACACGATATTA
517 AATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTA
4175509 ATGCTTTGATTTCATAAGAAAAGTTTTTTTTC
582 ATGCTTTGATTTCATAAGAAAAG-TTTTTTTC
* *
4175541 TCCACCGTTTTTCC-TAGAATCAAAGTTTATACCTTAACTGAGACAAACATGGATTTATGCAATA
1 TCCACCG-TTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATA
* * * * * * *
4175605 ATCTCTATTTTTTCAATGATTGGGCACTATAAACACGTTATCTTC-TTAGGATACATAAGATTGA
65 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* * * ** * * * *** *
4175669 TG-TTTCGATTATATAAGAAAAGATTTTCTTGCCA-TGATTTTCCTTATAGTTTGAGTTCGTAT-
130 CGAATT-GGTTATGCAAGAAAAGTTTTTCTTGCCACTTA-TTTCCTTAAAG-CAAAGTTCAT-TC
* * * * * * * *** * * *
4175731 GTCAAATGAAG-CAAACA-CGAATTCTTATAATAAGCTTCATTCATTCCCTGATTAGGCA-ACAC
191 ATCAAAT-AAGACAAAAATAG-ATTCTTGTAATAATCTCCATT-TTTTTGTGATTAGACAGCCAA
** * * * * * ** *
4175793 AACGTGTTCTCCTT-TTTGGGAT--A-AATATTAATGCTTCGA-TTTCATAAGAAAAGCTTTT-T
253 AACACGCTCT-CTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCT
** *** ** * * * * * **
4175852 TTCTTCATTGTTTTCCTTAGCATTAATGTTTTTACGTTAACTGAGACAAACATGGATATACGCAA
317 TTCAAC-TACCTTT--TTAAAATCAAAGTTTGTCCCTTAAAAGAGAC-AA-A--G--AT--G-AA
* * * * * * * * **
4175917 TAATCTCCATTATTTTAGTGAT-TGGGAACTATAAACACGTTATCTTTATTGGTATACAAAATAT
370 T--TCT-CA-TA----A-TCATCT-----CCAAAAACACATTCTATTCATTGGGATACATGATAT
* ** * ** * * **** * *
4175981 TGTTGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCAT-TTATTTCCTTA-AAGCAAAGTTCCTT
421 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATGAT-TTTCCTTATAATTTGAGTTCGTA
* * * * * * ** * * *
4176044 TTTCAAATAAGAAAAAAAAAAGGATTCTTGA-AAAAATCTCCATTATTT-TTTGATTTGGTAGCC
485 TGTCAAAT--GAAACAAAAATGGATTCTT-ATAATAATCTTCATTCTTTCCATGATTAGGCAACC
* ** * * * * * ** *
4176107 AAAGCACGCTCT-CTTCATTAGGATGCATGATATTGACGCTTTGATTTTCGCAAGAAATGCTTTT
547 AAAACACATTCTCCTT-ATTGGGATACACGATATTAATGCTTTGA-TTTCATAAGAAAAG-TTTT
*
4176171 CTT-
609 TTTC
** * * * * *
4176174 TCCA-C-TACCTCTTTAAAATCAAAGTTTGTACCTTAAAAGAGA-TAA-A--G----ACG----A
1 TCCACCGT-TTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATA
* * * * * * * *
4176225 AT-T-C--T-TAT-AATGA-T---CTCCA-AAACCACATTCTATTCTTTGGGATCCATAATATTG
65 ATCTCCATTCTTTCAATGATTGGGCACCATAAA-CACGTTATCTTCATTGGGATGCACAATATTG
* * * * * * * *
4176279 GC-ACATTGGTTGTGCAAGAAAAGCTTTTCTTGCCGCTTATTTCTTTAAAGCAAAGATCGTTCGT
129 ACGA-ATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCAT
* * ** * * * * * ** *
4176343 TAATTTTTG-CAAGAATAGATTCTTATAATAATTTAC-TTTTTTTGTGAATAGGTAGCAAAAACA
193 CAA-ATAAGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACA
* * * * * *
4176406 CGCACTCTTCATTGGGATGCATGATATTGATGCTATAATTTTTGCAAGAAATGCTTTTCTTTCCA
257 CGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAA
* * *
4176471 CTACCTTTATAAAATCAAAGTTTGTCCTTTAAAAGAGACAAAGATGAATTCTCATAATGATCTCC
322 CTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCC
* * *
4176536 AAAAACAAATTCTATTCGTTGGGATACATGATATTGAAT-TTTTGATTATATATGAAAAGCTTTT
387 AAAAACACATTCTATTCATTGGGATACATGATATTG-ATGTTTTGATTATATAAGAAAAGCTTTT
* * * * * *
4176600 CTCT-CCACGATTTTTCTT-TTA-TTGAGTTCATATATCAAATG-AA-AAAAATGGATTTTTATA
451 CT-TGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATA
* ** * * *
4176660 ATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACATGTTTTCCTCATTGGGATACATGATAT
515 ATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATAT
**
4176725 TAACACTTTGATTTCATAAGAAAAGTTTTTTTC
580 TAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * *
4176758 TCCACCGTTTTTCTTAGAATTAAAGTTTATACTTTAATTGAGACAAACATGGATTTACCCAATAA
1 TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
* * ** * * * * *
4176823 TCTACATTCTTTAAATGGCTAGGCACCATAAACCCGTTATCTTCTTTGGGATCCATAATATTGAC
66 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * *
4176888 -ACATTGGTTATGCAAGAAAAGTTTTTCTTGCCA-TTTTTTGCTTAAAGCAAAGTTCACTCATCA
131 GA-ATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCA
* * * * * * * * * *
4176951 AATAAGAGAAAGACAGGTTCTTCTAATAATCTCCA-TTTTTCGTGATTAGGCGGCCAGAACACAC
195 AATAAGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGC
* **
4177015 ACTCTTTATTGGGATGCATGATATTGAT
260 TCTCTTCCTTGGGATGCATGATATTGAT
4177043 TTGATTTTTG
Statistics
Matches: 5782, Mismatches: 1014, Indels: 374
0.81 0.14 0.05
Matches are distributed among these distances:
583 7 0.00
584 41 0.01
585 70 0.01
586 6 0.00
587 1 0.00
588 13 0.00
589 58 0.01
590 3 0.00
593 6 0.00
594 2 0.00
597 3 0.00
598 3 0.00
599 3 0.00
600 3 0.00
601 1 0.00
602 201 0.03
603 317 0.05
604 598 0.10
605 206 0.04
606 675 0.12
607 198 0.03
608 117 0.02
609 370 0.06
610 786 0.14
611 501 0.09
612 761 0.13
613 262 0.05
614 335 0.06
615 4 0.00
616 1 0.00
617 2 0.00
619 2 0.00
620 6 0.00
622 3 0.00
623 1 0.00
624 4 0.00
628 3 0.00
629 4 0.00
630 2 0.00
631 4 0.00
632 49 0.01
633 101 0.02
634 48 0.01
635 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (612 bp):
TCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAA
TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
GAATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAA
ATAAGACAAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGACAGCCAAAACACGCT
CTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCAACTAC
CTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATCATCTCCAAAA
ACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGC
CATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAAATGGATTCTTATAATAATC
TTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGC
TTTGATTTCATAAGAAAAGTTTTTTTC
Found at i:4175950 original size:314 final size:318
Alignment explanation
Indices: 4175335--4175962 Score: 811
Period size: 314 Copynumber: 2.0 Consensus size: 318
4175325 CTATTCATTG
* * * * *
4175335 GGATACATGATATTTATGTTTTGATTATATAAGAAAAGCTTTTCTCACCATAATTTTCCTTATAA
1 GGATACATAAGATTGATGTTTCGATTATATAAGAAAAGATTTTCTCACCATAATTTTCCTTATAA
* * * * *
4175400 TTTGAGTTCATATGTCAAATGAAATAAAAATGCATTCTTATAATAATCTTCATTATTTTCATGAC
66 TTTGAGTTCATATGTCAAATGAAACAAAAACGAATTCTTATAATAAGCTTCATTATTTCCATGAC
* * *
4175465 TAGGGAACCAAAACACATTCTCCTTCTTTGGAGACACGATATTAATGCTTTGATTTCATAAGAAA
131 TAGGCAACCAAAACACATTCTCCTTCTTTGGAGACACAATATTAATGCTTCGATTTCATAAGAAA
*
4175530 AGTTTTTTTTCTCCACCGTTTTTCCTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGGAT
196 AGCTTTTTTTCTCCACCGTTTTTCCTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGGAT
* * * *
4175595 TTATGCAATAATCTCTATTTTTTCAATGATTGGGCACTATAAACACGTTATCTTCTTA
261 ATACGCAATAATCTCCATTTTTTCAATGATTGGGAACTATAAACACGTTATCTTCTTA
** * *
4175653 GGATACATAAGATTGATGTTTCGATTATATAAGAAAAGATTTTCTTGCCATGATTTTCCTTATAG
1 GGATACATAAGATTGATGTTTCGATTATATAAGAAAAGATTTTCTCACCATAATTTTCCTTATAA
* * * *
4175718 TTTGAGTTCGTATGTCAAATGAAGCAAACACGAATTCTTATAATAAGCTTCATTCA-TTCCCTGA
66 TTTGAGTTCATATGTCAAATGAAACAAAAACGAATTCTTATAATAAGCTTCATT-ATTTCCATGA
* * *** *
4175782 TTAGGCAA-CACAACGTGTTCTCCTT-TTTGG-GATA-AATATTAATGCTTCGATTTCATAAGAA
130 CTAGGCAACCAAAACACATTCTCCTTCTTTGGAGACACAATATTAATGCTTCGATTTCATAAGAA
* ** * * * * *
4175843 AAGCTTTTTTTCTTCATTG-TTTTCCTTAGCATTAATGTTTTTACGTTAACTGAGACAAACATGG
195 AAGCTTTTTTTCTCCACCGTTTTTCC-TAGAATCAAAGTTTATACCTTAACTGAGACAAACATGG
*
4175907 ATATACGCAATAATCTCCATTATTTT-AGTGATTGGGAACTATAAACACGTTATCTT
259 ATATACGCAATAATCTCCATT-TTTTCAATGATTGGGAACTATAAACACGTTATCTT
4175963 TATTGGTATA
Statistics
Matches: 266, Mismatches: 41, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
313 6 0.02
314 119 0.45
315 7 0.03
316 5 0.02
317 13 0.05
318 115 0.43
319 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (318 bp):
GGATACATAAGATTGATGTTTCGATTATATAAGAAAAGATTTTCTCACCATAATTTTCCTTATAA
TTTGAGTTCATATGTCAAATGAAACAAAAACGAATTCTTATAATAAGCTTCATTATTTCCATGAC
TAGGCAACCAAAACACATTCTCCTTCTTTGGAGACACAATATTAATGCTTCGATTTCATAAGAAA
AGCTTTTTTTCTCCACCGTTTTTCCTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGGAT
ATACGCAATAATCTCCATTTTTTCAATGATTGGGAACTATAAACACGTTATCTTCTTA
Found at i:4177637 original size:20 final size:21
Alignment explanation
Indices: 4177606--4177644 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
4177596 CGGTCAAAAC
4177606 TCTAGAATGTATCGATACACA
1 TCTAGAATGTATCGATACACA
4177627 TCTAG-ATGTATCGATACA
1 TCTAGAATGTATCGATACA
4177645 TTATGCTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (21 bp):
TCTAGAATGTATCGATACACA
Found at i:4177786 original size:13 final size:13
Alignment explanation
Indices: 4177768--4177792 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4177758 CATGGGATAT
4177768 TGTATCGATATAA
1 TGTATCGATATAA
4177781 TGTATCGATATA
1 TGTATCGATATA
4177793 TATCAATGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTATCGATATAA
Found at i:4179168 original size:12 final size:12
Alignment explanation
Indices: 4179153--4179185 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4179143 ACCATCAAAG
4179153 ATGATGAAGATA
1 ATGATGAAGATA
*
4179165 ATGATGATGATA
1 ATGATGAAGATA
4179177 ATGATGAAG
1 ATGATGAAG
4179186 TTGACTCGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (12 bp):
ATGATGAAGATA
Found at i:4184181 original size:13 final size:13
Alignment explanation
Indices: 4184163--4184188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4184153 CATTTTATGC
4184163 TGTATCGATACAT
1 TGTATCGATACAT
4184176 TGTATCGATACAT
1 TGTATCGATACAT
4184189 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4184185 original size:33 final size:32
Alignment explanation
Indices: 4184143--4184204 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
4184133 TACAAGCCAA
*
4184143 TGTATCGATACAT-TTTATGCTGTATCGATACAT
1 TGTATCGATACATACTT-TG-TGTATCGATACAT
4184176 TGTATCGATACATACTTTGTGTATCGATA
1 TGTATCGATACATACTTTGTGTATCGATA
4184205 TAAGTTTGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 10 0.37
33 15 0.56
34 2 0.07
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:4184297 original size:13 final size:13
Alignment explanation
Indices: 4184279--4184303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4184269 ACAATGCAAC
4184279 ATGTATCGATACA
1 ATGTATCGATACA
4184292 ATGTATCGATAC
1 ATGTATCGATAC
4184304 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4184298 original size:33 final size:33
Alignment explanation
Indices: 4184261--4184326 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
4184251 TCTTTTTCAA
4184261 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
** *
4184294 GTATCGATACTGTGCAACATGTATTGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
4184327 TTAATGTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:4186627 original size:20 final size:21
Alignment explanation
Indices: 4186598--4186638 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
4186588 TGTTTTTAAA
4186598 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
4186617 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
4186639 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:4192979 original size:19 final size:20
Alignment explanation
Indices: 4192936--4192986 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
4192926 TACAAGCCAA
*
4192936 TGTATCGATACATTTTATGG
1 TGTATCGATACATCTTATGG
4192956 TGTATCGATACATACTT-T-G
1 TGTATCGATACAT-CTTATGG
4192975 TGTATCGATACA
1 TGTATCGATACA
4192987 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.45
20 14 0.48
21 2 0.07
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATCTTATGG
Found at i:4193066 original size:20 final size:20
Alignment explanation
Indices: 4193041--4193106 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
4193031 TCTTTTTCAA
4193041 GTATCGATACAATGCAACAT
1 GTATCGATACAATGCAACAT
4193061 GTATCGAT---A--C-A-AT
1 GTATCGATACAATGCAACAT
*
4193074 GTATCGATACTATGCAACAT
1 GTATCGATACAATGCAACAT
4193094 GTATCGATACAAT
1 GTATCGATACAAT
4193107 TAAATGTGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 1 0.03
20 22 0.58
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (20 bp):
GTATCGATACAATGCAACAT
Found at i:4193077 original size:13 final size:13
Alignment explanation
Indices: 4193059--4193083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4193049 ACAATGCAAC
4193059 ATGTATCGATACA
1 ATGTATCGATACA
4193072 ATGTATCGATAC
1 ATGTATCGATAC
4193084 TATGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4193078 original size:33 final size:33
Alignment explanation
Indices: 4193041--4193106 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
4193031 TCTTTTTCAA
4193041 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
*
4193074 GTATCGATACTATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
4193107 TAAATGTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:4194991 original size:610 final size:611
Alignment explanation
Indices: 4193625--4202553 Score: 10625
Period size: 611 Copynumber: 14.6 Consensus size: 611
4193615 ACATGTAGAT
* * * * *
4193625 GTTCATATGTCAAATGAAATAAACATGGATTCTTATTATAATCCTCATTCTTTTCAGGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4193690 AACCAAAACACA-TCCCGCTTATTGGGATACACGATATTAATGCTTTGACTTCATAAG-AAAGTT
66 AACCAAAACACATTCTC-CTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* * * *
4193753 TTTTTCTCCACTGTTTTCCTTGGAATCAAAGTCTATACCTTAAATGAGACAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * ** * *
4193818 CAATAATCTCTATTCATTCAATGATTAGGCACCATAAACTCGTTATCTTCAATGGGGTGCACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAAT
* * * * *
4193883 ATTGACGCATTGGCTATGCAAGAAAAGCTTTTATTGCCACTTATTTCCTTAAAGCAAAATTTATT
260 ATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* **
4193948 CGTCAAACT-ATGCAAAAATGGATTCTTGTCTTAATCTCCA-TTTTTTGTGATTAGGTAGCCAAA
325 CGTCAAA-TAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAA
* * * *
4194011 ACACGCTCTCTTCATTGCGATGCAAGATATCGATGCTTTGATTTTCACAAGAAATGCTTTTCTTT
389 ACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTT
* * * * * **
4194076 CCATTACCATCTTAAAATTAAAGTTTGTCCC-TAGAAAAAGACAAAGATGGATTCTCATAGCGA-
454 CCACTACCTTTTTAAAATCAAAGTTTGTCCCTTA-AAAGAGACAAAGATGGATTCTCATAATGAT
* * * * * *
4194139 CTCCAAAAACTCATTCTATTCAATGGGATACATGATATTAATGTTCTGATTATACAAGAAAAGCT
518 CTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* *
4194204 ATTCTTGCCACGATATCCCTTATAATTTGA
583 TTTCTTGCCACGAT-TTCCTTATAATTTGA
* * * * * *
4194234 ATTCGTATCTCAAATGAAACAAACATGAATTCTTATAATAAGCTTCATTCTTTCCATGATAAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * *
4194299 AA-CAAAACACATTCTCTTTCTTGGAATACATGATATTAATGCTTTGATTTCATAAGAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * *
4194363 TTTTCTCCACCATTTTCCTTAGAATTAATGTTTATACCTTAAATGAGACAATCATGGATTTACGC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* * * *
4194428 AATAATATCAATTCTTTCAATGATTGGGCACCATAAACAAGTTGTCTTCATTGGGATGCACAACA
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAATA
** * *
4194493 TTGACACATTGGTTATGCAAGAAAAG-TTTTCTTGCCACTTATTTCCTCAAAGGAAAGTTCATTC
261 TTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTC
* * * * **
4194557 GTCAAATACTACAAAAAAGAAATCTTGTAATAATCTCCATTACTTTGTGATTAGGTAGCCAAAAC
326 GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAAC
*
4194622 CCGCTCTCTTCCA-TGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
391 ACGCTCTCTT-CATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
* * * * *
4194686 AACTACCTTTTTAAAATCAAAATTTGTCTCTTAAAAGAGACAAAGATGAATTCTCATAATGATCA
455 CACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCT
* *
4194751 CCAAAAACACATTCTATTCATTAAGATACATGATATTGCTGTTTTGATTATATAAGAAAAGCTTT
520 CCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTT
* *
4194816 TCTTGCCGCGATTCCCTTTATAATTTGA
585 TCTTGCCACGATTTCC-TTATAATTTGA
* * * * *
4194844 GTTCGTATGTCAAATGAAAGAAACAAT-AATTCTTATAATAAGCTTCATTCTTTCCATAATTAGG
1 GTTCGTATGTCAAATGAAACAAAC-ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
** * * *
4194908 CAA-CAAAATGCATTCTCTTTCTTGGGATACACGATATTAAAGCTTTGATTTCATAAGAAAAGCT
65 CAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* *
4194972 TTTTTCCCCACCGTTTTCCTTAGAATCAATGTTTGTACCTTAAATGAGACAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * * *
4195037 CAATAATCTCCATTCTTTTAATGATTGGGCACTATAAACATGTTATCTCCTTTGGGATGCACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAAT
* * * * * *
4195102 ATTGATGCATTGGCTACGCAAGAAAAGGTTTTCTTGCCATTTATTTCCGTAAAGTAAAGTTCATT
260 ATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * * *
4195167 TGTCAAATAATACAAAAATGGATTCTTGTAAAAATCTCCATTTTTCTCTGA-CATGGTAGCCAAA
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTA-GGTAGCCAAA
* * * * *
4195231 ACACGGTCTCCTCATTGGGATGCATGATATTGATGCTTTCATTTTCACGAGAAATGCTTTTCTTT
389 ACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTT
* * * * *
4195296 CAACTACCATTTTAAAATTAAAGTTTGTCCCTTAAAAGAGGCAAAGATGGATTCTCAAAATGATC
454 CCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATC
* * *
4195361 TTCAAAAACACATTCTATTCACT-GGATACATGATATTGATGTTTAGATTATATAAGAAAAGCTT
519 TCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
* * * * *
4195425 TTCTTACCATGTTTTTCTTTATAATTTAA
584 TTCTTGCCACG-ATTTCCTTATAATTTGA
* * *
4195454 GTTCGTATGTCAAATGAAACAGACATTGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4195519 AACCAAAACGCATTTTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAAAAAAAG-T
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCAT-AAGAAAAGCT
* * **
4195583 TTTTTCTCCACCTTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGGAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * ** * * * * *
4195648 TAACAATCTCTGTTCTATCAATAATTGGGCACC-TGAAACACGTTATCTTCATTTGGATGCATAA
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCAT-AAACAAGTTATCTTCATTGGGATGCACAA
* * *
4195712 TATTGATGCACTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATCTCCTTAAAGCAAAGTTCAT
259 TATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
* * * * *
4195777 TTGTCAAATAATACAAAATTGGATTCTTGTAATAATCTCCATTTTTTTTGTGTTTAGGCAGCCAC
324 TCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTTGTGATTAGGTAGCCAA
* * *
4195842 AACACGCTCTCTTCATTGGGATGCATCATATTGATGCTTTGATTTTCACAAGAAATGCCTTTT-G
388 AACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATG-CTTTTCT
* * * *
4195906 ATCCACTATCC-TTTTAAAATCAAAGTTT-CCCACTTAAAAAGAGACAAAGATAGATTCTCACAA
452 TTCCACTA-CCTTTTTAAAATCAAAGTTTGTCC-CTT-AAAAGAGACAAAGATGGATTCTCATAA
* * * * *
4195969 TGATCTGCAAAAACACATACTATTCATTGGGATATAGGATATTGATGTTTTGATTATATAAGAAA
514 TGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAA
*
4196034 AGCTTTTCTTGCCACGATTTTCCATATAATTTGA
579 AGCTTTTCTTGCCACGA-TTTCCTTATAATTTGA
* *
4196068 GTTCGTTTGTCAAATGAAACAAACATGGATTCTTATAATAATATTCATTCTTTTCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * * *
4196133 AACCGAAACCCATTCCCCTTCTTGGGAAACATGATATTAATGCTTTGATTTCATAAAAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * * * *
4196198 TTTTCTCCACCGTTTTCCTTAAAATCAATGTTTATACCTTAAACGAGACAAAAATGAATTTATGC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* *** * ** * *
4196263 AATAATCTCCATTCTTTCAATGATTGTGCGTGATAAACAAGCTCCCTTCATTAGGATGCAGAATA
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAATA
*
4196328 TTGATGCATCATTGGTTATGCAAGAAAAG-TTTTCTTGCCACATATTTCCTTAAAGCAAAGTTCA
261 TTGATG---CATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA
* * *
4196392 TTCGTCAAATAAGACAAAAATGGATTCATGTAATAATCTCCA-TTTTTTGTGATTAGGAAGCCAA
323 TTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAA
* * * *
4196456 AACATGCTCTCTTCATTGGGATGCATGAAATTGATGCTTTGATTTTC-AAATGAATTGCTTTTCT
388 AACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAA-GAAATGCTTTTCT
* * * *
4196520 TTCCATTACCTTTTTAAAATCAAAGTTTG-CCTGTTAAAAGAGGCGAAGATGGATTCTCATAATG
452 TTCCACTACCTTTTTAAAATCAAAGTTTGTCC-CTTAAAAGAGACAAAGATGGATTCTCATAATG
* ** * * * * * **
4196584 ATCTACAAAAACGGATTTTATTCATAAGGGTTCATGACATTGATGTTTCAATTATATAAGAAAAG
516 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * *
4196649 CTTTCCTTGCCAC-ATTTTTTCTTATAATTAGA
581 CTTTTCTTGCCACGA--TTTCCTTATAATTTGA
* * *
4196681 GTTCATATGTC-AATCAAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATTAGG
1 GTTCGTATGTCAAAT-GAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
* * * * * * *
4196745 CAACCAAAACATATTCTCCTTACTGGGATACACTATATTAATGTTTTGGTTTAATAAGAATAGCT
65 CAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* * * * * *
4196810 TTTATCTCTACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATAGATTTAAG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * * * *
4196875 TAATAATCTGCATTCTTTCAATGATTGGGCACCTTAAACACGTTATCTTTATTTGGATGCACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAAT
* * * * * *
4196940 ATTGAGGCATTAGTTATGCAAGAAAAGCTTTTATTGTCACTTATTTCCTTAAAGCAAAGTTTATA
260 ATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * * * ** *
4197005 CATCAAATATTGCAAAAAAGAATTCTTGTAATAATCTCCATTACTTTGTGATTAGATAGCCAAAA
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAA
* * ** * ** * * * *
4197070 CATGCTCTCTTCCTTAAGATGCATGATATTGATGCTTTCATTTTTTCATGATAT--TGATGCTTT
390 CACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCT-TTTCTTT
* * * * *
4197133 CAAATACCTTTTCAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTTATAATGATC
454 CCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATC
* *
4197198 TCCAAAAACACATTCTATTCATTAAGATACATGATATTGATGTTTTGATTATATAAGAAAAACTT
519 TCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
**
4197263 TTCTTGCCACGATTCTGTTTATAATTTGA
584 TTCTTGCCACGATT-TCCTTATAATTTGA
* * * * * *
4197292 GTCCGTATGTCAAATGAAACAAACATGAATTATTATAATAAGCTTCATTATTTCCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * *
4197357 AA-CAAAACGCATTCGT-TTTCTTGGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGCT
66 AACCAAAACACATTC-TCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* ** *
4197420 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATATCTTAAACAAGATAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* *
4197485 CAATAATCTCCATTCTTTCAATGATTAGGCACACCATAAAC--GTTATCTTCTTTGGGATGCACA
195 CAATAATCTCCATTCTTTCAATGATT-GG-GCACCATAAACAAGTTATCTTCATTGGGATGCACA
** *
4197548 ATATTGATGCATTGGTTACACAAGAAAAGCTTTTCTTGCCATTTATTTCCTTAAAGCAAAGTTCA
258 ATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA
* * * * *
4197613 -CCTGTCAAATAATATAAAAATGGATTCTTGTAAAAATCTCCATTTTTTTTGTGATTAGGCATCC
323 TTC-GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTTGTGATTAGGTAGCC
* * * * * *
4197677 AAAACACGCAT-TCTTCACTAGGACGCTTGATATTGATGCATTCATTTTCGC-------GCTTTT
386 AAAACACGC-TCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTT
* * * *
4197734 CTTTCCATTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGAC-AA-ATGGATTTTCATAGT
450 CTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAAT
* * * * *
4197797 GATCTTCAAAAACACGTTCTATTCACTAGGATACATGATATCGATGTTTTGATTAGATAAGAAAA
515 GATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAA
* **
4197862 GCTTTTCTTGCCACAATTTTCCTTACGATTTGA
580 GCTTTTCTTGCCACGA-TTTCCTTATAATTTGA
* * *
4197895 GTTCGTATGTCAAATGAGACAAACATCGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* ** *
4197960 AACCAAAACGCATTCTCCTTATTAAGATACACGATATTAATGCTTTGATTTCATAAAAAAAG-TT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
** * * **
4198024 TTTTCTCTGCCTTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGGAAACATGGATTTACGC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* ** * ** * *
4198089 AACAATCTCTGTTCTTTCAATAATTGGGTGCCCTAAACACA-TTATCTTTATTGGGATGCACAAT
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACA-AGTTATCTTCATTGGGATGCACAAT
* *
4198153 ATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTAATTTCCTTAAAGCAAAGTTCATT
260 ATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * *
4198218 TGTCAAATAATACAAAATTGGATTCTTGTAATAATCTCCATTTTTTTGTGTTTAGGAAGCCAAAA
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAA
* * * * * * * **
4198283 CACGCTCGCTCCATTAGGATGCATCATATTTATGCTTTGATTTTCCCAAGAAATGTTTTTCGATC
390 CACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
* * * *
4198348 GACTATCTTTTTAAAATCAATGTTT-TCCCCTTAAAAAGAGAAAAAGATGGATTCTCATAATGAT
455 CACTACCTTTTTAAAATCAAAGTTTGT-CCCTT-AAAAGAGACAAAGATGGATTCTCATAATGAT
* * * * **
4198412 CTACAAAAACACAATCTCTTCATTAGGATACATGATATTAATAATTTGATTATATAAGAAAA-CT
518 CTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* **
4198476 TTTCTTGCCATGATTTTCAATATAATTTGA
583 TTTCTTGCCACGA-TTTCCTTATAATTTGA
* * * *
4198506 GTTTGTATGTCAAATGAGACAAACATGGATTCTTATAATTATCTTCATTGTTTTCATGATTA-GC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
** * * * *
4198570 AACTGAAACCCATTCTCCTTATTGGGAAACATGATATTAATGCTTTGATTTCATAAAAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * * * *
4198635 TTTTCTCCACCATTTTCCTTAGAATCAATGTTTATACCTTAAATAAGAAAAACATAGATTTACAC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* * ** * *
4198700 AATAATCTCCATTCTTTCATTGATTGTGTGCCATAAACACGTTCTCTTCATTAGGG-TGCACAAT
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATT-GGGATGCACAAT
*
4198764 ATTGATGCATTGGTTATGCAAGAAAAG-TTTTTTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
260 ATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * **
4198828 CGTCAAATAAGACAAAAATGGATTCATGTAATAATCTCTA-TTTTTTGTGATTAGAAAGCCAAAA
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAA
* * * * * *
4198892 CATGCTCTTTTCATTGGGATGCATGAAATTGATGCTTTCATTTTCACAAGAATTGCTTTTCTTTC
390 CACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
* *
4198957 CACTACCTTTTTAAAATCAAAGTTTG-CCTCTTAAAAAAGATAAATG-TGGATTCTCATAATGAT
455 CACTACCTTTTTAAAATCAAAGTTTGTCC-CTTAAAAGAGACAAA-GATGGATTCTCATAATGAT
* * * * * *
4199020 CTACAAAAACAAATTTTATTCGTTAGGATACATGACATTGATGTTTTGATTGTATAAGAAAAGCT
518 CTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* * *
4199085 TTTCTTGCCACAATTTTTCTTATAATTGGA
583 TTTCTTGCCACGA-TTTCCTTATAATTTGA
* * * * * *
4199115 GTTCATATGTCAAATGAAACAAACATTGATTATAATAAAAATCTTCATTCTTTTCATGACTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* *
4199180 AACCAAAACACATTCTCCTTATTGGGATACACTATATTAATGCTTT-AGTTTCATAAGAATAGCT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGA-TTTCATAAGAAAAGCT
* * * * * * **
4199244 TTTATCTCCACCGTTTTTCTTGGAATCAAAGTTTATACCTTAAATGAGACAAACTTAGATTTAAA
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * * *
4199309 TAATAATCTCCATTCTTTCAATGATTAGGCACCTTAAACACGTTATCTTCATTTGGATGCACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAAT
* * *
4199374 ATTGATACATTAGTTATGCAAGAAAAGCTTTTACTAT--CACTTATTTCCTTAAAGCAAAGTTTA
260 ATTGATGCATTGGTTATGCAAGAAAAGCTTTT-CT-TGCCACTTATTTCCTTAAAGCAAAGTTCA
* * * * ** *
4199437 TTTGTCAAATACTACAAAAAAGAATTCTTGTAATAATCTCCATTACTTTGTGATTAGATAGCCAA
323 TTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAA
* * * * * * * *
4199502 AACATGCTCTCTTCCTTAGGATGCATGATATTGATGCTTTCATTTTCGCATGATAT--TGATGCT
388 AACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCT-TTTCT
* * * *
4199565 TT-AACCTACCTTTTCAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTTATAATG
452 TTCCA-CTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATG
4199629 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
516 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * *
4199694 CTTTTCCTGCCACAATTCTCCATATAATTTGA
581 CTTTTCTTGCCACGATT-TCCTTATAATTTGA
* * * *
4199726 GTTCATATGTCAAATGAAACAAACATGAATTCTTATAATAAGCTTCATTCTTTCCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * *
4199791 AA-CAAAACACATTCAT-TTTCTTGGGATACACGATATTAATGCTTTGATTTCTTATGAAAAGCT
66 AACCAAAACACATTC-TCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* * **
4199854 TTTCTCTCCACCGTTTTCCTTAGAATCAATGTTTATATCTTAAACAAGACAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * * *
4199919 CAATAATCTCCATTCTTTCAATGATTAGGCACACCATAAACATGTTATCTTCTTTAGGATGCAAA
195 CAATAATCTCCATTCTTTCAATGATT-GG-GCACCATAAACAAGTTATCTTCATTGGGATGCACA
* ** *
4199984 ATATTGATGCAATGGTTACACAAGAAAAGCTTTTCTTGCCACTTATTTCCCTAAAGCAAAGTTCA
258 ATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA
* * * * *
4200049 TCCGTCAAATAATACAAAAATGGATTCTTGTAAAAATCTCCATTTTTTTGTGATTGGGCAACCAA
323 TTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAA
* * * * *
4200114 AACACGCTCTCTTCATTGGGATGCTTGATATTGATGCTTTTATTTTCACAAAAAAAAAAAGCTTT
388 AACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGC----AAGAAATGCTTT
* ** * *
4200179 TCTTTCCATTACCACTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTTATAG
449 TCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAA
* ** * * * *
4200244 CGATCTTAAAAAACACGTTCTATTCACTAGGATACATGATATCGATGTTTTGATTATATAACAAA
514 TGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAA
4200309 AGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
579 AGCTTTTCTTGCCACGA-TTTCCTTATAATTTGA
* * *
4200343 GTTCGCATGTCAAATGAAACAAACATAGATTCTTATAATAATTTTCATTCTTTTCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * *
4200408 AACAAAAACATATTCGCCTTATCGGGAAACACGATATTAATGCTTTGATTTCATGAGAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
** * ** **
4200473 TTTTCTCCACTATTTTCCTTGGAATCAATGTTTATACCTTAAATGAGACAGTCATGGATTTACAT
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* * ** * * *
4200538 AATAATCTCCATTCTTTCAACGATTGTGTTCCATAAATAAGTTCTCTTCATTAGGATGCACAATA
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAATA
* * *
4200603 TTGATGCGTTGGTTATGCAAGAAAAG-TTTTCTTGCCACTTATATCCTTAAAGGAAAGTTCATTC
261 TTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTC
* * * * * ** *
4200667 CTCAAATACTACAAAAAAGAAATCTTGTAATAATCTCCATTACTTTGTGATTAGGCAGCCAAAAC
326 GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAAC
4200732 ACGCTCTCTTCCA-TGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
391 ACGCTCTCTT-CATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
* * * * *
4200796 AACTACCTTTTAAAAATCAAAATTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCA
455 CACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCT
* *
4200861 CCAAAAAAACATTCTATTCATTAGGATATATGATATCGATATATGATATCGATGTTTTGATTATA
520 CCAAAAACACATTCTATTCATTA-G------GATA-C-----ATGATATTGATGTTTTGATTATA
* * *
4200926 TAACAAAAGCTTTTTTTGCCACGATTTTCCTTATCATTTGA
572 TAAGAAAAGCTTTTCTTGCCACGA-TTTCCTTATAATTTGA
* * * **
4200967 GTTCGCATGTCAAATGAAACAAACATAGTTTCTTATAATAATCTTCATTCTTTTCACAATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4201032 AACAAAAACATATTCTCCTTATTGGGAAACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * *
4201097 TTTTCTCCACCGTTTTCCTT-GTAATCAATGTTTATACCTTAAATGAGACAATCCTGGATTTACA
131 TTTTCTCCACCGTTTTCCTTAG-AATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * ** * * *
4201161 TAATAATCTCCATTCTTTCATTGATTGTGCATTAT-AACAAGTTCTCTTCATTAGGATACACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCAC---
**
4201225 ATTGATGCATTGGTTATTGATGCATTGGTTATGCAAGAAAAG-TTTTCTTATCACTTATTTCCTT
257 ----A---A-----TATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTT
* * * * * * *
4201289 AAAGTAAAGTTCTTTCATCAAATACTACAAAAAAGAAATCTTGTAATAATCTCCATTTTTTTGTG
310 AAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTG
* * * * * * *
4201354 ATTAGGTAGCCAAAACATGCTCGCTTCATTGGGATGCATGATATGGATGCGTTCATTTTCGGAAA
375 ATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAG
* *
4201419 AAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATAGA
440 AAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGA
* * * * * *
4201484 TTCTCATAGTGATCTTCAAAAACCCATTCTATTCACTA-GATACATCATATTGATGTTTAGATTA
505 TTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTA
4201548 TATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
570 TATAAGAAAAGCTTTTCTTGCCACGA-TTTCCTTATAATTTGA
* * * *
4201591 GTTCGTATGTCAAATGGAACAAACATCGATTCTTATAATAATCTTCATTCTCTTCACGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4201656 AACCAAAACACATCCTCCTTATTAGGATACACGATATTAATGCTTTAATTTCATAA-AAAATG-T
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAA-GCT
* * *
4201719 TTTTTCTCCACC-TCTTTCCTCAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTAC
130 TTTTTCTCCACCGT-TTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTAC
* * * ** *
4201783 GCAACAATCTCTATTCTTTCAATAATTGGGTGCCCTAAACACA-TTATCTTCATTGGGATGCACA
194 GCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACA-AGTTATCTTCATTGGGATGCACA
* *
4201847 ATATTGATGCATTGGTTATGCAAGAAAAGTTTTTGTTGCCACTTATTTCCTTAAAGCAAAGTTCA
258 ATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA
* * * * * *
4201912 TTTC-TCAAATAATA-AAAAATTAGATTCTTGTAATAATCTCCTTTTTTTTCTGTTTAGGCAACC
323 -TTCGTCAAATAATACAAAAA-TGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCC
* * *
4201975 AAAACACGCTCTCTTCATTAGGATGCATCATATTGATGCTTTGATTTTTGCAAGAAATGCTTTTC
386 AAAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTC
** * * *
4202040 GATCCCCTATCTTTTTAAAATCAAAGTTTGCCCCTTAAAAAGAGACAAAGATGGATTCTCATAAT
451 TTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTT-AAAAGAGACAAAGATGGATTCTCATAAT
* *
4202105 GATCTACAAAAACA-A-TCTGTTCATTAGGATACATGATATTGATGTTTTGATTATATAAG-AAA
515 GATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAA
* *
4202167 GCTTTTCTTGCCACGATTTTCCATATAACTTGA
580 GCTTTTCTTGCCACGA-TTTCCTTATAATTTGA
* *
4202200 GTTCGTATGTCAAATGAAAAAAACATGGATTCTTATAATAATCTTCATTTTTTTCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * * * *
4202265 AACCGAAACCCATTTTCTTTATTGGGAAACATGATATTAATGCTTCGTTTTCATGAA-AAAAGCT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCAT-AAGAAAAGCT
** * *
4202329 TTTTTCTCCACTATTTTCCTTAGAATCAA-GTATATACCTTAAATAAGACAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * ** * *
4202393 TAATAATCTCCATTCTTTCAATGATTGTGTGCCATAAACAAGTTCTCTTCATTAGGG-TGCACAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATT-GGGATGCACAA
* *
4202457 TATTGATGCATTGGTTATGCAAGAAAA-ATTTTTTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
259 TATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
* * * *
4202521 TCATCAAATAAGACAAAAATGGAATCATGTAAT
324 TCGTCAAATAATACAAAAATGGATTCTTGTAAT
4202554 GTAGACACCT
Statistics
Matches: 7123, Mismatches: 1043, Indels: 309
0.84 0.12 0.04
Matches are distributed among these distances:
601 8 0.00
602 59 0.01
603 347 0.05
604 55 0.01
605 43 0.01
606 1 0.00
607 4 0.00
608 244 0.03
609 842 0.12
610 1396 0.20
611 1401 0.20
612 501 0.07
613 396 0.06
614 374 0.05
615 130 0.02
616 128 0.02
617 223 0.03
618 137 0.02
619 1 0.00
622 1 0.00
623 109 0.02
624 462 0.06
625 1 0.00
629 1 0.00
630 5 0.00
633 1 0.00
637 2 0.00
638 251 0.04
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.36
Consensus pattern (611 bp):
GTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACAAGTTATCTTCATTGGGATGCACAATA
TTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTC
GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAAC
ACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCC
ACTACCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTC
CAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTT
CTTGCCACGATTTCCTTATAATTTGA
Found at i:4195588 original size:611 final size:611
Alignment explanation
Indices: 4193625--4202553 Score: 10525
Period size: 610 Copynumber: 14.6 Consensus size: 611
4193615 ACATGTAGAT
* * * * * *
4193625 GTTCATATGTCAAATGAAATAAACATGGATTCTTATTATAATCCTCATTCTTTTCAGGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4193690 AACCAAAACACA-TCCCGCTTATTGGGATACACGATATTAATGCTTTGACTTCATAAG-AAAGTT
66 AACCAAAACACATTCTC-CTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* * * *
4193753 TTTTTCTCCACTGTTTTCCTTGGAATCAAAGTCTATACCTTAAATGAGACAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * * ** *
4193818 CAATAATCTCTATTCATTCAATGATTAGGCACCATAAACTCGTTATCTTCAATGGGGTGCACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAAT
* * * * * *
4193883 ATTGACGCATTGGCTATGCAAGAAAAGCTTTTATTGCCACTTATTTCCTTAAAGCAAAATTTATT
260 ATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* **
4193948 CGTCAAACT-ATGCAAAAATGGATTCTTGTCTTAATCTCCATTTTTTGTGATTAGGTAGCCAAAA
325 CGTCAAA-TAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAA
* * *
4194012 CACGCTCTCTTCATTGCGATGCAAGATATCGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTC
389 CACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTC
* * * * **
4194077 CATTACCATCTTAAAATTAAAGTTTGTCCC-TAGAAAAAGACAAAGATGGATTCTCATAGCGA-C
454 CACTACCATTTTAAAATCAAAGTTTGTCCCTTA-AAAGAGACAAAGATGGATTCTCATAATGATC
* * * * * * *
4194140 TCCAAAAACTCATTCTATTCAATGGGATACATGATATTAATGTTCTGATTATACAAGAAAAGCTA
518 TCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
* *
4194205 TTCTTGCCACGATATCCCTTATAATTTGA
583 TTCTTGCCACGATTTTCCTTATAATTTGA
* * * * *
4194234 ATTCGTATCTCAAATGAAACAAACA-TGAATTCTTATAATAAGCTTCATTCTTTCCATGATAAGG
1 GTTCGTATGTCAAATGAAACAAACATTG-ATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
* * * *
4194298 CAA-CAAAACACATTCTCTTTCTTGGAATACATGATATTAATGCTTTGATTTCATAAGAAAAGCT
65 CAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* * *
4194362 TTTTTCTCCACCATTTTCCTTAGAATTAATGTTTATACCTTAAATGAGACAATCATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * * * *
4194427 CAATAATATCAATTCTTTCAATGATTGGGCACCATAAACAAGTTGTCTTCATTGGGATGCACAAC
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAAT
** * *
4194492 ATTGACACATTGGTTATGCAAGAAAA-GTTTTCTTGCCACTTATTTCCTCAAAGGAAAGTTCATT
260 ATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * * *
4194556 CGTCAAATACTACAAAAAAGAAATCTTGTAATAATCTCCATTACTTTGTGATTAGGTAGCCAAAA
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATT-TTTTGTGATTAGGTAGCCAAAA
* *
4194621 CCCGCTCTCTTCCA-TGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTT
389 CACGCTCTCTT-CATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTT
* * * * *
4194685 CAACTACCTTTTTAAAATCAAAATTTGTCTCTTAAAAGAGACAAAGATGAATTCTCATAATGATC
453 CCACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATC
* * *
4194750 ACCAAAAACACATTCTATTCATTAAGATACATGATATTGCTGTTTTGATTATATAAGAAAAGCTT
518 TCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
* *
4194815 TTCTTGCCGCGA-TTCCCTTTATAATTTGA
583 TTCTTGCCACGATTTTCC-TTATAATTTGA
* * * * * *
4194844 GTTCGTATGTCAAATGAAAGAAACAATAATTCTTATAATAAGCTTCATTCTTTCCATAATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
** * * *
4194909 AA-CAAAATGCATTCTCTTTCTTGGGATACACGATATTAAAGCTTTGATTTCATAAGAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* *
4194973 TTTTCCCCACCGTTTTCCTTAGAATCAATGTTTGTACCTTAAATGAGACAAACATGGATTTACGC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* * * *
4195038 AATAATCTCCATTCTTTTAATGATTGGGCACTATAAACATGTTATCTCCTTTGGGATGCACAATA
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATA
* * * * * *
4195103 TTGATGCATTGGCTACGCAAGAAAAGGTTTTCTTGCCATTTATTTCCGTAAAGTAAAGTTCATTT
261 TTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTC
* * *
4195168 GTCAAATAATACAAAAATGGATTCTTGTAAAAATCTCCATTTTTCTCTGA-CATGGTAGCCAAAA
326 GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTT-TGTGATTA-GGTAGCCAAAA
* * * *
4195232 CACGGTCTCCTCATTGGGATGCATGATATTGATGCTTTCATTTTCACGAGAAATGCTTTTCTTTC
389 CACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTC
* * * *
4195297 AACTACCATTTTAAAATTAAAGTTTGTCCCTTAAAAGAGGCAAAGATGGATTCTCAAAATGATCT
454 CACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCT
* * *
4195362 TCAAAAACACATTCTATTCACT-GGATACATGATATTGATGTTTAGATTATATAAGAAAAGCTTT
519 CCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTT
* * * * *
4195426 TCTTACCATGTTTTTCTTTATAATTTAA
584 TCTTGCCACGATTTTCCTTATAATTTGA
* *
4195454 GTTCGTATGTCAAATGAAACAGACATTGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4195519 AACCAAAACGCATTTTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAAAAAAAG-T
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCAT-AAGAAAAGCT
* * **
4195583 TTTTTCTCCACCTTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGGAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * ** * * *
4195648 TAACAATCTCTGTTCTATCAATAATTGGGCACC-TGAAACACGTTATCTTCATTT-GGATGCATA
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCAT-AAACACGTTATCTTC-TTTGGGATGCACA
* * *
4195711 ATATTGATGCACTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATCTCCTTAAAGCAAAGTTCA
258 ATATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA
* * * *
4195776 TTTGTCAAATAATACAAAATTGGATTCTTGTAATAATCTCCATTTTTTTTGTGTTTAGGCAGCCA
323 TTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA--TTTTTTGTGATTAGGTAGCCA
* *
4195841 CAACACGCTCTCTTCATTGGGATGCATCATATTGATGCTTTGATTTTCACAAGAAATGCCTTTT-
386 AAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATG-CTTTTC
** * * *
4195905 GATCCACTATCC-TTTTAAAATCAAAGTTT-CCCACTTAAAAAGAGACAAAGATAGATTCTCACA
450 TTTCCACTA-CCATTTTAAAATCAAAGTTTGTCC-CTT-AAAAGAGACAAAGATGGATTCTCATA
* * * * *
4195968 ATGATCTGCAAAAACACATACTATTCATTGGGATATAGGATATTGATGTTTTGATTATATAAGAA
512 ATGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAA
*
4196033 AAGCTTTTCTTGCCACGATTTTCCATATAATTTGA
577 AAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * *
4196068 GTTCGTTTGTCAAATGAAACAAACATGGATTCTTATAATAATATTCATTCTTTTCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * * *
4196133 AACCGAAACCCATTCCCCTTCTTGGGAAACATGATATTAATGCTTTGATTTCATAAAAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * * * *
4196198 TTTTCTCCACCGTTTTCCTTAAAATCAATGTTTATACCTTAAACGAGACAAAAATGAATTTATGC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* *** * * ** * * *
4196263 AATAATCTCCATTCTTTCAATGATTGTGCGTGATAAACAAGCTCCCTTCATTAGGATGCAGAATA
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATA
*
4196328 TTGATGCATCATTGGTTATGCAAGAAAA-GTTTTCTTGCCACATATTTCCTTAAAGCAAAGTTCA
261 TTGATG---CATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA
* * *
4196392 TTCGTCAAATAAGACAAAAATGGATTCATGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAA
323 TTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAA
* * *
4196457 ACATGCTCTCTTCATTGGGATGCATGAAATTGATGCTTTGATTTTCA-AATGAATTGCTTTTCTT
388 ACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAA-GAAATGCTTTTCTT
* * * * *
4196521 TCCATTACCTTTTTAAAATCAAAGTTTG-CCTGTTAAAAGAGGCGAAGATGGATTCTCATAATGA
452 TCCACTACCATTTTAAAATCAAAGTTTGTCC-CTTAAAAGAGACAAAGATGGATTCTCATAATGA
* ** * * * * * **
4196585 TCTACAAAAACGGATTTTATTCATAAGGGTTCATGACATTGATGTTTCAATTATATAAGAAAAGC
516 TCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGC
* * *
4196650 TTTCCTTGCCAC-ATTTTTTCTTATAATTAGA
581 TTTTCTTGCCACGA-TTTTCCTTATAATTTGA
* * * *
4196681 GTTCATATGTC-AATCAAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATTAGG
1 GTTCGTATGTCAAAT-GAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
* * * * * * *
4196745 CAACCAAAACATATTCTCCTTACTGGGATACACTATATTAATGTTTTGGTTTAATAAGAATAGCT
65 CAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCT
* * * * * *
4196810 TTTATCTCTACCATTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATAGATTTAAG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * *
4196875 TAATAATCTGCATTCTTTCAATGATTGGGCACCTTAAACACGTTATCTT-TATTTGGATGCACAA
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCT-TTGGGATGCACAA
* * * * * *
4196939 TATTGAGGCATTAGTTATGCAAGAAAAGCTTTTATTGTCACTTATTTCCTTAAAGCAAAGTTTAT
259 TATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
* * * * * * * *
4197004 ACATCAAATATTGCAAAAAAGAATTCTTGTAATAATCTCCATTACTTTGTGATTAGATAGCCAAA
324 TCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATT-TTTTGTGATTAGGTAGCCAAA
* * ** * ** * * * *
4197069 ACATGCTCTCTTCCTTAAGATGCATGATATTGATGCTTTCATTTTTTCATGATAT--TGATGCTT
388 ACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCT-TTTCTT
* * * *
4197132 TCAAATACC-TTTTCAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTTATAATGA
452 TCCACTACCATTTT-AAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGA
* *
4197196 TCTCCAAAAACACATTCTATTCATTAAGATACATGATATTGATGTTTTGATTATATAAGAAAAAC
516 TCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGC
* **
4197261 TTTTCTTGCCACGATTCTGTTTATAATTTGA
581 TTTTCTTGCCACGATTTTCCTTATAATTTGA
* * * * *
4197292 GTCCGTATGTCAAATGAAACAAACA-TGAATTATTATAATAAGCTTCATTATTTCCATGATTAGG
1 GTTCGTATGTCAAATGAAACAAACATTG-ATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
* * * *
4197356 CAA-CAAAACGCATTCGT-TTTCTTGGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGC
65 CAACCAAAACACATTC-TCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGC
* ** *
4197419 TTTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATATCTTAAACAAGATAAACATGGATTTAC
129 TTTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTAC
*
4197484 GCAATAATCTCCATTCTTTCAATGATTAGGCACACCAT-AA-ACGTTATCTTCTTTGGGATGCAC
194 GCAATAATCTCCATTCTTTCAATGATT-GG-GCACCATAAACACGTTATCTTCTTTGGGATGCAC
** * *
4197547 AATATTGATGCATTGGTTACACAAGAAAAGCTTTTCTTGCCATTTATTTCCTTAAAGCAAAGTTC
257 AATATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTC
* * * * *
4197612 A-CCTGTCAAATAATATAAAAATGGATTCTTGTAAAAATCTCCATTTTTTTTGTGATTAGGCATC
322 ATTC-GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA--TTTTTTGTGATTAGGTAGC
* * * * * * *
4197676 CAAAACACGCAT-TCTTCACTAGGACGCTTGATATTGATGCATTCATTTT--C--G---CGCTTT
384 CAAAACACGC-TCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTT
* * *
4197733 TCTTTCCATTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGAC-AA-ATGGATTTTCATAG
448 TCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAA
* * * * *
4197796 TGATCTTCAAAAACACGTTCTATTCACTAGGATACATGATATCGATGTTTTGATTAGATAAGAAA
513 TGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAA
* **
4197861 AGCTTTTCTTGCCACAATTTTCCTTACGATTTGA
578 AGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * *
4197895 GTTCGTATGTCAAATGAGACAAACATCGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* ** *
4197960 AACCAAAACGCATTCTCCTTATTAAGATACACGATATTAATGCTTTGATTTCATAAAAAAAG-TT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
** * * **
4198024 TTTTCTCTGCCTTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGGAAACATGGATTTACGC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* ** * ** * *
4198089 AACAATCTCTGTTCTTTCAATAATTGGGTGCCCTAAACACATTATCTT-TATTGGGATGCACAAT
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCT-TTGGGATGCACAAT
* *
4198153 ATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTAATTTCCTTAAAGCAAAGTTCATT
260 ATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * *
4198218 TGTCAAATAATACAAAATTGGATTCTTGTAATAATCTCCATTTTTTTGTGTTTAGGAAGCCAAAA
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTGTGATTAGGTAGCCAAAA
* * * * * * * **
4198283 CACGCTCGCTCCATTAGGATGCATCATATTTATGCTTTGATTTTCCCAAGAAATGTTTTTCGATC
389 CACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTC
* * * * *
4198348 GACTATCTTTTTAAAATCAATGTTT-TCCCCTTAAAAAGAGAAAAAGATGGATTCTCATAATGAT
454 CACTACCATTTTAAAATCAAAGTTTGT-CCCTT-AAAAGAGACAAAGATGGATTCTCATAATGAT
* * * * **
4198412 CTACAAAAACACAATCTCTTCATTAGGATACATGATATTAATAATTTGATTATATAAGAAAA-CT
517 CTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCT
* **
4198476 TTTCTTGCCATGATTTTCAATATAATTTGA
582 TTTCTTGCCACGATTTTCCTTATAATTTGA
* * * * *
4198506 GTTTGTATGTCAAATGAGACAAACATGGATTCTTATAATTATCTTCATTGTTTTCATGATTA-GC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
** * * * *
4198570 AACTGAAACCCATTCTCCTTATTGGGAAACATGATATTAATGCTTTGATTTCATAAAAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * * * *
4198635 TTTTCTCCACCATTTTCCTTAGAATCAATGTTTATACCTTAAATAAGAAAAACATAGATTTACAC
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* * ** * *
4198700 AATAATCTCCATTCTTTCATTGATTGTGTGCCATAAACACGTTCTCTTCATTAGGG-TGCACAAT
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTGGGATGCACAAT
*
4198764 ATTGATGCATTGGTTATGCAAGAAAA-GTTTTTTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
260 ATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATT
* * * **
4198828 CGTCAAATAAGACAAAAATGGATTCATGTAATAATCTCTATTTTTTGTGATTAGAAAGCCAAAAC
325 CGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAAC
* * * * *
4198893 ATGCTCTTTTCATTGGGATGCATGAAATTGATGCTTTCATTTTCACAAGAATTGCTTTTCTTTCC
390 ACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCC
* * *
4198958 ACTACCTTTTTAAAATCAAAGTTTG-CCTCTTAAAAAAGATAAATG-TGGATTCTCATAATGATC
455 ACTACCATTTTAAAATCAAAGTTTGTCC-CTTAAAAGAGACAAA-GATGGATTCTCATAATGATC
* * * * * *
4199021 TACAAAAACAAATTTTATTCGTTAGGATACATGACATTGATGTTTTGATTGTATAAGAAAAGCTT
518 TCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTT
* * *
4199086 TTCTTGCCACAATTTTTCTTATAATTGGA
583 TTCTTGCCACGATTTTCCTTATAATTTGA
* * * * *
4199115 GTTCATATGTCAAATGAAACAAACATTGATTATAATAAAAATCTTCATTCTTTTCATGACTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* *
4199180 AACCAAAACACATTCTCCTTATTGGGATACACTATATTAATGCTTT-AGTTTCATAAGAATAGCT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGA-TTTCATAAGAAAAGCT
* * * * * * **
4199244 TTTATCTCCACCGTTTTTCTTGGAATCAAAGTTTATACCTTAAATGAGACAAACTTAGATTTAAA
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * *
4199309 TAATAATCTCCATTCTTTCAATGATTAGGCACCTTAAACACGTTATCTTCATTT-GGATGCACAA
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTGGGATGCACAA
* * * *
4199373 TATTGATACATTAGTTATGCAAGAAAAGCTTTTACTAT--CACTTATTTCCTTAAAGCAAAGTTT
259 TATTGATGCATTGGTTATGCAAGAAAAGGTTTT-CT-TGCCACTTATTTCCTTAAAGCAAAGTTC
* * * * * *
4199436 ATTTGTCAAATACTACAAAAAAGAATTCTTGTAATAATCTCCATTACTTTGTGATTAGATAGCCA
322 ATTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATT-TTTTGTGATTAGGTAGCCA
* * * * * * * * *
4199501 AAACATGCTCTCTTCCTTAGGATGCATGATATTGATGCTTTCATTTTCGCATGATAT--TGATGC
386 AAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCT-TTTC
* * *
4199564 TTT-AACCTACC-TTTTCAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTTATAA
450 TTTCCA-CTACCATTTT-AAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAA
4199627 TGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAA
513 TGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAA
* * * *
4199692 AGCTTTTCCTGCCACAATTCTCCATATAATTTGA
578 AGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * *
4199726 GTTCATATGTCAAATGAAACAAACA-TGAATTCTTATAATAAGCTTCATTCTTTCCATGATTAGG
1 GTTCGTATGTCAAATGAAACAAACATTG-ATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
* * * *
4199790 CAA-CAAAACACATTCAT-TTTCTTGGGATACACGATATTAATGCTTTGATTTCTTATGAAAAGC
65 CAACCAAAACACATTC-TCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGC
* * **
4199853 TTTTCTCTCCACCGTTTTCCTTAGAATCAATGTTTATATCTTAAACAAGACAAACATGGATTTAC
129 TTTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTAC
* * * *
4199918 GCAATAATCTCCATTCTTTCAATGATTAGGCACACCATAAACATGTTATCTTCTTTAGGATGCAA
194 GCAATAATCTCCATTCTTTCAATGATT-GG-GCACCATAAACACGTTATCTTCTTTGGGATGCAC
* ** * *
4199983 AATATTGATGCAATGGTTACACAAGAAAAGCTTTTCTTGCCACTTATTTCCCTAAAGCAAAGTTC
257 AATATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTC
* * * * *
4200048 ATCCGTCAAATAATACAAAAATGGATTCTTGTAAAAATCTCCATTTTTTTGTGATTGGGCAACCA
322 ATTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTGTGATTAGGTAGCCA
* * * *
4200113 AAACACGCTCTCTTCATTGGGATGCTTGATATTGATGCTTTTATTTTCACAAAAAAAAAAAGCTT
386 AAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCAC----AAGAAATGCTT
* * *
4200178 TTCTTTCCATTACCACTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTTATA
447 TTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATA
** ** * * * *
4200243 GCGATCTTAAAAAACACGTTCTATTCACTAGGATACATGATATCGATGTTTTGATTATATAACAA
512 ATGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAA
4200308 AAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
577 AAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * *
4200343 GTTCGCATGTCAAATGAAACAAACATAGATTCTTATAATAATTTTCATTCTTTTCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * *
4200408 AACAAAAACATATTCGCCTTATCGGGAAACACGATATTAATGCTTTGATTTCATGAGAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
** * ** **
4200473 TTTTCTCCACTATTTTCCTTGGAATCAATGTTTATACCTTAAATGAGACAGTCATGGATTTACAT
131 TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
* * ** * * * * *
4200538 AATAATCTCCATTCTTTCAACGATTGTGTTCCATAAATAAGTTCTCTTCATTAGGATGCACAATA
196 AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATA
* * *
4200603 TTGATGCGTTGGTTATGCAAGAAAA-GTTTTCTTGCCACTTATATCCTTAAAGGAAAGTTCATTC
261 TTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTC
* * * * * * *
4200667 CTCAAATACTACAAAAAAGAAATCTTGTAATAATCTCCATTACTTTGTGATTAGGCAGCCAAAAC
326 GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATT-TTTTGTGATTAGGTAGCCAAAAC
*
4200732 ACGCTCTCTTCCA-TGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
390 ACGCTCTCTT-CATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTC
* * *
4200796 AACTACC-TTTTAAAAATCAAAATTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAATGATC
454 CACTACCATTTT-AAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATC
* * *
4200860 ACCAAAAAAACATTCTATTCATTAGGATATATGATATCGATATATGATATCGATGTTTTGATTAT
518 TCCAAAAACACATTCTATTCATTA-G------GATA-C-----ATGATATTGATGTTTTGATTAT
* * *
4200925 ATAACAAAAGCTTTTTTTGCCACGATTTTCCTTATCATTTGA
570 ATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * * **
4200967 GTTCGCATGTCAAATGAAACAAACATAGTTTCTTATAATAATCTTCATTCTTTTCACAATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4201032 AACAAAAACATATTCTCCTTATTGGGAAACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
* * *
4201097 TTTTCTCCACCGTTTTCCTT-GTAATCAATGTTTATACCTTAAATGAGACAATCCTGGATTTACA
131 TTTTCTCCACCGTTTTCCTTAG-AATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * * ** * * * * *
4201161 TAATAATCTCCATTCTTTCATTGATTGTGCATTAT-AACAAGTTCTCTTCATTAGGATACACAAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAAT
* **
4201225 ATTGATGCATTGGTTATTGATGCATTGGTTATGCAAGAAAAGTTTTCTTATCACTTATTTCCTTA
260 ATTGATGCATTGG---TT-ATGCA------A-G--A-AAAGGTTTTCTTGCCACTTATTTCCTTA
* * * * * * *
4201290 AAGTAAAGTTCTTTCATCAAATACTACAAAAAAGAAATCTTGTAATAATCTCCATTTTTTTGTGA
311 AAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTGTGA
* * * * * ** *
4201355 TTAGGTAGCCAAAACATGCTCGCTTCATTGGGATGCATGATATGGATGCGTTCATTTTCGGAAAA
375 TTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGA
*
4201420 AATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATAGAT
440 AATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGAT
* * * * * *
4201485 TCTCATAGTGATCTTCAAAAACCCATTCTATTCACTA-GATACATCATATTGATGTTTAGATTAT
505 TCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTAT
4201549 ATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
570 ATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * * *
4201591 GTTCGTATGTCAAATGGAACAAACATCGATTCTTATAATAATCTTCATTCTCTTCACGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4201656 AACCAAAACACATCCTCCTTATTAGGATACACGATATTAATGCTTTAATTTCATAA-AAAATG-T
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAA-GCT
* * *
4201719 TTTTTCTCCACC-TCTTTCCTCAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTAC
130 TTTTTCTCCACCGT-TTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTAC
* * * ** * * *
4201783 GCAACAATCTCTATTCTTTCAATAATTGGGTGCCCTAAACACATTATCTTCATTGGGATGCACAA
194 GCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAA
* *
4201848 TATTGATGCATTGGTTATGCAAGAAAAGTTTTTGTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
259 TATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCA-
* * * * * *
4201913 TTC-TCAAATAATA-AAAAATTAGATTCTTGTAATAATCTCCTTTTTTTTCTGTTTAGGCAACCA
323 TTCGTCAAATAATACAAAAA-TGGATTCTTGTAATAATCTCC-ATTTTTTGTGATTAGGTAGCCA
* * ** *
4201976 AAACACGCTCTCTTCATTAGGATGCATCATATTGATGCTTTGATTTTTGCAAGAAATGCTTTTCG
386 AAACACGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCT
* * * * *
4202041 ATCCCCTATCTTTTTAAAATCAAAGTTTGCCCCTTAAAAAGAGACAAAGATGGATTCTCATAATG
451 TTCCACTACCATTTTAAAATCAAAGTTTGTCCCTT-AAAAGAGACAAAGATGGATTCTCATAATG
* *
4202106 ATCTACAAAAACA-A-TCTGTTCATTAGGATACATGATATTGATGTTTTGATTATATAAG-AAAG
515 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* *
4202168 CTTTTCTTGCCACGATTTTCCATATAACTTGA
580 CTTTTCTTGCCACGATTTTCCTTATAATTTGA
* * *
4202200 GTTCGTATGTCAAATGAAAAAAACATGGATTCTTATAATAATCTTCATTTTTTTCATGATTAGGC
1 GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * * * * * * *
4202265 AACCGAAACCCATTTTCTTTATTGGGAAACATGATATTAATGCTTCGTTTTCATGAA-AAAAGCT
66 AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCAT-AAGAAAAGCT
** * *
4202329 TTTTTCTCCACTATTTTCCTTAGAATCAA-GTATATACCTTAAATAAGACAAACATGGATTTACG
130 TTTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACG
* * ** * * * *
4202393 TAATAATCTCCATTCTTTCAATGATTGTGTGCCATAAACAAGTTCTCTTCATTAGGG-TGCACAT
195 CAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTTGGGATGCACAA
* *
4202457 TATTGATGCATTGGTTATGCAAGAAAA-ATTTTTTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
259 TATTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAT
* * * *
4202521 TCATCAAATAAGACAAAAATGGAATCATGTAAT
324 TCGTCAAATAATACAAAAATGGATTCTTGTAAT
4202554 GTAGACACCT
Statistics
Matches: 7121, Mismatches: 1031, Indels: 337
0.84 0.12 0.04
Matches are distributed among these distances:
601 4 0.00
602 60 0.01
603 350 0.05
604 55 0.01
605 40 0.01
606 6 0.00
607 5 0.00
608 246 0.03
609 806 0.11
610 1411 0.20
611 1394 0.20
612 492 0.07
613 406 0.06
614 375 0.05
615 128 0.02
616 127 0.02
617 220 0.03
618 139 0.02
619 1 0.00
620 5 0.00
621 2 0.00
622 1 0.00
623 124 0.02
624 478 0.07
626 2 0.00
627 5 0.00
629 1 0.00
630 4 0.00
633 1 0.00
634 1 0.00
636 1 0.00
637 5 0.00
638 220 0.03
639 6 0.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.36
Consensus pattern (611 bp):
GTTCGTATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
AACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGCTT
TTTTCTCCACCGTTTTCCTTAGAATCAATGTTTATACCTTAAATGAGACAAACATGGATTTACGC
AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATA
TTGATGCATTGGTTATGCAAGAAAAGGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTC
GTCAAATAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAACA
CGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCA
CTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCC
AAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTC
TTGCCACGATTTTCCTTATAATTTGA
Found at i:4200903 original size:13 final size:13
Alignment explanation
Indices: 4200885--4200913 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4200875 TATTCATTAG
4200885 GATATATGATATC
1 GATATATGATATC
4200898 GATATATGATATC
1 GATATATGATATC
4200911 GAT
1 GAT
4200914 GTTTTGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (13 bp):
GATATATGATATC
Found at i:4201244 original size:15 final size:15
Alignment explanation
Indices: 4201224--4201256 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
4201214 GGATACACAA
4201224 TATTGATGCATTGGT
1 TATTGATGCATTGGT
4201239 TATTGATGCATTGGT
1 TATTGATGCATTGGT
4201254 TAT
1 TAT
4201257 GCAAGAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (15 bp):
TATTGATGCATTGGT
Found at i:4202877 original size:13 final size:13
Alignment explanation
Indices: 4202859--4202883 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4202849 TTCAATGATT
4202859 TGTATCGATACAA
1 TGTATCGATACAA
4202872 TGTATCGATACA
1 TGTATCGATACA
4202884 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4202970 original size:13 final size:13
Alignment explanation
Indices: 4202952--4202976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4202942 ATTGCTCAAA
4202952 TGTATCGATACAT
1 TGTATCGATACAT
4202965 TGTATCGATACA
1 TGTATCGATACA
4202977 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4203027 original size:32 final size:32
Alignment explanation
Indices: 4202985--4203060 Score: 134
Period size: 32 Copynumber: 2.4 Consensus size: 32
4202975 CACTGATCTT
* *
4202985 TGTATTGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATACAGGCAAATTTGCCCAGA
4203017 TGTATCGATACATACAGGCAAATTTGCCCAGA
1 TGTATCGATACATACAGGCAAATTTGCCCAGA
4203049 TGTATCGATACA
1 TGTATCGATACA
4203061 CTATGAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (32 bp):
TGTATCGATACATACAGGCAAATTTGCCCAGA
Found at i:4211309 original size:31 final size:30
Alignment explanation
Indices: 4211266--4211393 Score: 123
Period size: 31 Copynumber: 4.1 Consensus size: 30
4211256 TTCAAATACC
* *
4211266 TTCTTAAAGTCCACGACTCAGTGGCATTTT
1 TTCTCAAAGTCCACAACTCAGTGGCATTTT
* *
4211296 TTCTCCAAAGTCCACAACTTAGTGGCAATCTCT
1 TTCT-CAAAGTCCACAACTCAGTGGC-AT-TTT
* *
4211329 TT-TCAAAGTCCACGACTCAGTGGCATCTT
1 TTCTCAAAGTCCACAACTCAGTGGCATTTT
* * *
4211358 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TTC-TCAAAGTCCACAACTCAGTGGCA-TTTT
4211390 TTCT
1 TTCT
4211394 TTTCAAAGCC
Statistics
Matches: 79, Mismatches: 13, Indels: 11
0.77 0.13 0.11
Matches are distributed among these distances:
29 3 0.04
30 6 0.08
31 58 0.73
32 8 0.10
33 4 0.05
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (30 bp):
TTCTCAAAGTCCACAACTCAGTGGCATTTT
Found at i:4211383 original size:62 final size:62
Alignment explanation
Indices: 4211271--4211462 Score: 188
Period size: 62 Copynumber: 3.0 Consensus size: 62
4211261 ATACCTTCTT
* * * **
4211271 AAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGTCCACAACTTAGTGGCAATCTCTTTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCAATCTCTTTTC
* *
4211333 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCA---ATCTCTTTTC
* * * * * * *
4211398 AAAGCCCACGATTCCGTGTCACCCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCT-TTTT
1 AAAGTCCACGACTCAGTGGCA-TC-TTTTC--TTCAAAGCCCACAACTCCGTGGCAATCTCTTTT
4211462 C
62 C
4211463 CCTTTTAAGT
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
62 47 0.44
65 30 0.28
66 3 0.03
67 5 0.05
69 23 0.21
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCCGTGGCAATCTCTTTTC
Found at i:4211404 original size:34 final size:34
Alignment explanation
Indices: 4211326--4211540 Score: 166
Period size: 35 Copynumber: 6.5 Consensus size: 34
4211316 AGTGGCAATC
* * * *
4211326 TCTTTTCAAAGTCCACGACTCAGTGGCATC-TTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
4211359 TC--TTCAAAGCCCACAACTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
* * *
4211391 TCTTTTCAAAGCCCACGATTCCGTGTCACCCTTTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCA-CCTTTT
*
4211426 TCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTT
* * *
4211461 TCCCTTTT--AAGTCCACAATTTCGTGGCACC----
1 T--CTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
* *
4211491 -CTTTT--AAGTCCACAACTCCGTGGCATCTTTCT
1 TCTTTTCAAAGCCCACAACTCCGTGGCACCTTT-T
*
4211523 CCTTTTCAAAAGCCCACA
1 TCTTTTC-AAAGCCCACA
4211541 CAAGTTGGTG
Statistics
Matches: 148, Mismatches: 18, Indels: 29
0.76 0.09 0.15
Matches are distributed among these distances:
27 24 0.16
31 22 0.15
32 5 0.03
33 7 0.05
34 23 0.16
35 54 0.36
36 8 0.05
37 5 0.03
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (34 bp):
TCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
Found at i:4211500 original size:27 final size:27
Alignment explanation
Indices: 4211462--4211515 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
4211452 CACTCTTTTT
* *
4211462 CCCTTTTAAGTCCACAATTTCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA
4211489 CCCTTTTAAGTCCACAACTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA
4211516 TCTTTCTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (27 bp):
CCCTTTTAAGTCCACAACTCCGTGGCA
Found at i:4211632 original size:49 final size:49
Alignment explanation
Indices: 4211560--4212231 Score: 666
Period size: 49 Copynumber: 14.1 Consensus size: 49
4211550 GGCGTTTTCT
* *
4211560 TTTAAG-CCTAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * *
4211609 TTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
4211658 CTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
** *
4211706 TTTAAGAACAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * *
4211749 TTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACTCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC-CTTCATC
** *
4211798 TTTAAAACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
4211841 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
4211889 TTTAAGACCAATGTCGCTGACCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
4211932 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* *
4211980 TTTAAGACCAATATCGTTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * *
4212023 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCGCCTTGGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATC
*
4212075 TTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * **
4212125 TTTAAGTCCAATATCG-TCGACCTTGAATCAGCATATTGGTGCCTTTGTCATC
1 TTTAAGTCCAATATCGCT-GGCCTTGAATCAGCACATTGGCACC--T-TCATC
* *
4212177 TTTCAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTCATC
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
4212227 TTTAA
1 TTTAA
4212232 CATTCCTAAG
Statistics
Matches: 516, Mismatches: 67, Indels: 80
0.78 0.10 0.12
Matches are distributed among these distances:
43 147 0.28
48 114 0.22
49 156 0.30
50 16 0.03
51 2 0.00
52 10 0.02
53 70 0.14
54 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
Found at i:4211766 original size:43 final size:43
Alignment explanation
Indices: 4211705--4212120 Score: 400
Period size: 43 Copynumber: 9.1 Consensus size: 43
4211695 GGCACCTTGT
* *
4211705 CTTTAAGAACAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
4211748 CTTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACTC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA--C
* *
4211793 TTGTCTTTAAAACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 ----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
4211840 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C
* *
4211884 TTGTCTTTAAGACCAATGTCGCTGACCTTGAATCAGCACATTGGCAC
1 ----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
4211931 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C
*
4211975 TTGTCTTTAAGACCAATATCGTTGGCCTTGAATCAGCACATTGGCAC
1 ----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
* * *
4212022 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCGCCTTGGTCATC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGC-----A---CATTGG-CA-C
* * *
4212075 TTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
4212118 CTT
1 CTT
4212121 CATCTTTAAG
Statistics
Matches: 309, Mismatches: 38, Indels: 52
0.77 0.10 0.13
Matches are distributed among these distances:
43 144 0.47
44 4 0.01
45 6 0.02
47 3 0.01
48 77 0.25
49 37 0.12
51 5 0.02
52 2 0.01
53 31 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (43 bp):
CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:4211842 original size:21 final size:20
Alignment explanation
Indices: 4211818--4211886 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 20
4211808 ATGTCGCTGG
4211818 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCA-ATTGGCA
* *
4211839 CCTTTAAGTC--CAATATCGCTA
1 CCTTGAA-TCAGCAAT-TGGC-A
4211860 GCCTTGAATCAGCATATTGGCA
1 -CCTTGAATCAGCA-ATTGGCA
4211882 CCTTG
1 CCTTG
4211887 TCTTTAAGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
19 2 0.05
20 5 0.14
21 14 0.38
22 9 0.24
23 5 0.14
24 2 0.05
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (20 bp):
CCTTGAATCAGCAATTGGCA
Found at i:4211938 original size:91 final size:91
Alignment explanation
Indices: 4211659--4212222 Score: 797
Period size: 91 Copynumber: 6.0 Consensus size: 91
4211649 ACCTTTATCC
*
4211659 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGAACAATGTCGCT
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCT
4211724 GGCCTTGAATCAGCACATTGGCACCT
66 GGCCTTGAATCAGCACATTGGCACCT
* * *
4211750 TTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACTCTTGTCTTTAAAACCAATGTCGC
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTGTCTTTAAGACCAATGTCGC
4211815 TGGCCTTGAATCAGCACATTGGCACCT
65 TGGCCTTGAATCAGCACATTGGCACCT
*
4211842 TTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCT
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCT
*
4211907 GACCTTGAATCAGCACATTGGCACCT
66 GGCCTTGAATCAGCACATTGGCACCT
* * *
4211933 TTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGTT
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCT
4211998 GGCCTTGAATCAGCACATTGGCACCT
66 GGCCTTGAATCAGCACATTGGCACCT
* * * *
4212024 TTAAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCGCCTTGGTCATCTTTTAAGTCCAATG
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G---TC-TTTAAGACCAATG
4212089 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCT
61 TCGCTGGCCTTGAATCAGCACATTGGCA----C--CT
* ** *
4212126 TTAAGTCCAATATCG-TCGACCTTGAATCAGCATATTGGTGCCTTTGTCATCTTTCAAGTCCAAT
1 TTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACC-TTG---TCTTT-AAGACCAAT
*
4212190 GTCGCTGGCCTTGAATCAACACATTGGCACCT
60 GTCGCTGGCCTTGAATCAGCACATTGGCACCT
4212222 T
1 T
4212223 CATCTTTAAC
Statistics
Matches: 434, Mismatches: 24, Indels: 25
0.90 0.05 0.05
Matches are distributed among these distances:
91 215 0.50
92 87 0.20
95 2 0.00
96 41 0.09
98 1 0.00
100 1 0.00
101 4 0.01
102 81 0.19
103 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (91 bp):
TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCACCT
Found at i:4211977 original size:21 final size:20
Alignment explanation
Indices: 4211908--4211977 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 20
4211898 AATGTCGCTG
4211908 ACCTTGAATCAGCACATTGGC
1 ACCTTGAATCAGCA-ATTGGC
* *
4211929 ACCTTTAAGTC--CAATATCGC
1 ACCTTGAA-TCAGCAAT-TGGC
4211949 TAGCCTTGAATCAGCATATTGGC
1 -A-CCTTGAATCAGCA-ATTGGC
4211972 ACCTTG
1 ACCTTG
4211978 TCTTTAAGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
19 2 0.05
20 5 0.13
21 15 0.39
22 9 0.24
23 5 0.13
24 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (20 bp):
ACCTTGAATCAGCAATTGGC
Found at i:4212103 original size:53 final size:52
Alignment explanation
Indices: 4212023--4212229 Score: 237
Period size: 53 Copynumber: 4.0 Consensus size: 52
4212013 CATTGGCACC
* *
4212023 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTAGCGCCTTGGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT-GTCATCT
* * *
4212076 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T-TCATC-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCT
* *
4212125 TTTAAGTCCAATATCG-TCGACCTTGAATCAGCATATTGGTGCCTTTGTCATCT
1 TTTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGGCGCC-TTGTCATCT
* * * * *
4212178 TTCAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACC-T-TCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCT
4212228 TT
1 TT
4212230 AACATTCCTA
Statistics
Matches: 131, Mismatches: 17, Indels: 15
0.80 0.10 0.09
Matches are distributed among these distances:
48 1 0.01
49 36 0.27
50 13 0.10
51 2 0.02
52 6 0.05
53 72 0.55
54 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (52 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCT
Found at i:4213113 original size:13 final size:13
Alignment explanation
Indices: 4213095--4213151 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
4213085 TTCAACAATT
4213095 TGTATCGATACAA
1 TGTATCGATACAA
4213108 TGTATCGATACATAA
1 TGTATCGATAC--AA
4213123 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
4213140 TGTATCGATACA
1 TGTATCGATACA
4213152 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4213132 original size:19 final size:18
Alignment explanation
Indices: 4213108--4213170 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
4213098 ATCGATACAA
4213108 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
4213127 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
4213140 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
*
4213159 TGTATTGATACA
1 TGTATCGATACA
4213171 ATGTATCGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:4213135 original size:32 final size:32
Alignment explanation
Indices: 4213094--4213178 Score: 152
Period size: 32 Copynumber: 2.7 Consensus size: 32
4213084 TTTCAACAAT
4213094 TTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
4213126 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
4213158 TTGTATTGATACAATGTATCG
1 TTGTATCGATACAATGTATCG
4213179 CTACGAAGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.38
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:4217066 original size:19 final size:19
Alignment explanation
Indices: 4217042--4217093 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
4217032 CACTGTTCAT
4217042 GTATCGATATATATGAATA
1 GTATCGATATATATGAATA
* *
4217061 GTATCGATACATTATGAATT
1 GTATCGATATA-TATGAATA
4217081 GTATCGATATATA
1 GTATCGATATATA
4217094 AGAGCATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (19 bp):
GTATCGATATATATGAATA
Found at i:4219926 original size:20 final size:20
Alignment explanation
Indices: 4219901--4219941 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
4219891 AATTTGAGTT
4219901 CGTATGTCAAATGAAACAAA
1 CGTATGTCAAATGAAACAAA
4219921 CGTATGTCAAATGAAACAAA
1 CGTATGTCAAATGAAACAAA
4219941 C
1 C
4219942 ATGGATTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.20
Consensus pattern (20 bp):
CGTATGTCAAATGAAACAAA
Found at i:4221278 original size:611 final size:610
Alignment explanation
Indices: 4220093--4222219 Score: 2859
Period size: 612 Copynumber: 3.5 Consensus size: 610
4220083 CTTCTTTGGG
* * ** *
4220093 ATAAACATGTTATCTTCTTTGGGATGCACAATATTGACACATTGGTTACACAAG-AAAGCTTTTC
1 ATAAACACGTTATCTTCTTTGGGATGCACAATATTGACACAATGGTTATGCAAGAAAAGTTTTTC
* * * * * *
4220157 TTGCCACTTATTTCCTTAAAGCAAAGTTCATCCATCAAATAATACAAAAATAGATTCTTATAAAA
66 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATAAGACAAAAATGGAATCATGTAAAA
* * ** *
4220222 ATCTCCATTTTTTTGGGATTAGGCAGCCAAAACACACTCTCTTCATTGGGATGCATGATATTGAT
131 ATCTCCATTTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTAGGATGCATGATATTGAT
* * *
4220287 GTTTTCATTTTCA-CAAAAAATGCTTTTCTTTCCACTGCCATTTTAAAATCAAAGTTTGCCCCTT
196 GCTTTCATTTT-AGCAAAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTT
* * * * *
4220351 -AAAAGGGATAAAGATGGATTCTCATAGTGATCTTCAAAAACACATTCTATTCGCTGGGATACTT
260 AAAAAGAGACAAAGATGGATTCTCATAATGATCTTCAAAAACACATTCTATTCACTAGGATACTT
* * *
4220415 GATATTGATGTTTAGATTATATAAGAAATGCTTTTTTTGCCAGGATTTTCCTTATAATTTGAGTT
325 GATATTGATGTTTAGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTT
* *
4220480 TGCATGTCAAATGAAACAAACATAGATTCTTATAATAATGTTCATTCTTTTCATGATTAGGCAAC
390 CGCATGTCAAATGAAACAAACATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAAC
* * * *
4220545 CAAAACACATTCTCCGTATTGGGATACACGACATTAATGCTCTGATTTCATAAGAAAAGCTTTTT
455 CAAAAC-CAATCT-CTTTTTGGGATACACGATATTAATGCTCTGATTTCATAAGAAAAGCTTTTT
* * * *
4220610 TCTCCACCTTCTTTCTTAGATTCAAAGTATATACATTAAA-AGAAGCAAACATGGATTTATGCAA
518 TCTCCACCTT-TTTCTTAGAATCAAAGTTTATACCTTAAAGAG-AGTAAACATGGATTTATGCAA
4220674 TAATCTCTGTTCTTACAAAGATTGGGCACC
581 TAATCTCTGTTCTTACAAAGATTGGGCACC
4220704 ATAAACACGTTATCTT-TATTGGGATGCACAATATTGACACAATGGTTATGCAAGAAAAGTTTTT
1 ATAAACACGTTATCTTCT-TTGGGATGCACAATATTGACACAATGGTTATGCAAGAAAAGTTTTT
* ** *
4220768 CTTGCCACTTATTTCCTTCAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAAT
65 CTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATAAGACAAAAATGGAATCATGTAAA
* * *
4220833 AATCTCCA-TTTTTTGTGATTGGGAAGCCCAAACATGCTCTCTTCACTAGGATGCATGATATTGA
130 AATCTCCATTTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTAGGATGCATGATATTGA
* * * * *
4220897 TGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCCCTACCTTTTTAAAATCAAAGTTTGACCCTT
195 TGCTTTCATTTTAGCAAAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTT
* * * * *
4220962 AAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAACCACATTCTATTCATTAAGATACAT
260 AAAAAGAGACAAAGATGGATTCTCATAATGATCTTCAAAAACACATTCTATTCACTAGGATACTT
* * * *
4221027 GATATTGATGTTTTGATTATATAAGAAAAACTTTTCTTGCCACGATTCTCTTTATAATTTGAGTT
325 GATATTGATGTTTAGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTT
** * * *
4221092 CGTTTGTCAAAAGAAACAAACAT-GAATTCTTATAAGAATCTTCAATC-TTTCTATGATTAGGCA
390 CGCATGTCAAATGAAACAAACATAG-ATTCTTATAATAATCTTCATTCTTTTC-ATGATTAGGCA
* * *
4221155 A-CAAAACGCAATCTCTTTCTTGGGATACACGATATGAATGCTTTGATTTCATAGGAAAAGCTTT
453 ACCAAAAC-CAATCTCTTT-TTGGGATACACGATATTAATGCTCTGATTTCATAAGAAAAGCTTT
* *
4221219 TTTCTCCACCATTTTACTTAGAATCAATGTTTATACCTTAAATGAGA-TAAACATGGATTTATGC
516 TTTCTCCACC-TTTTTCTTAGAATCAAAGTTTATACCTTAAA-GAGAGTAAACATGGATTTATGC
* * * *
4221283 AATAATTTATGTTCTTTCAATGATTGGGCACC
579 AATAATCTCTGTTCTTACAAAGATTGGGCACC
* * *
4221315 ATAAACACGTTATGTTCTTTGGGATGCACAATATTAACACACTGGTTATGCAAGAAAAGACTTTT
1 ATAAACACGTTATCTTCTTTGGGATGCACAATATTGACACAATGGTTATGCAAGAAAAG--TTTT
* * * * *
4221380 T-TTGCCATTTATTTCCTTAAAGCAAAGCTT-ATTCGTCAAATAATACAAAAATGGATTCTTGTA
64 TCTTGCCACTTATTTCCTTAAAGCAAAG-TTCATTCATCAAATAAGACAAAAATGGAATCATGTA
* *
4221443 AAAATCTCCATTTTTTTGTGATTAGGCAA-CCAAAACAAGCTCTCTTTATTAGGATGCATGATAT
128 AAAATCTCCATTTTTTTGTGATTAGG-AAGCCAAAACATGCTCTCTTCATTAGGATGCATGATAT
* *
4221507 TGATGCTTTCATTTTCGCAAAAAATGCTTTTCTTTCTACTACCATTTTAAAATCAAAGTTTGTCC
192 TGATGCTTTCATTTTAGCAAAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCC
* * *
4221572 CTTAAAATG-GACAAAGATGAATTCTCATAGTGATCTTCAAAAACACATTCTATTCACTAGGATA
257 CTTAAAAAGAGACAAAGATGGATTCTCATAATGATCTTCAAAAACACATTCTATTCACTAGGATA
** * * *
4221636 CTTGATATTGATGTAGAGATAATATAAGAAAAGCTTTTCTTGCCATGATTTTCCTCATAATTTGA
322 CTTGATATTGATGTTTAGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGA
4221701 GTTCGCATGTCAAATGAAACAAACATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
387 GTTCGCATGTCAAATGAAACAAACATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC
* * *
4221766 AACCAAAACAAATTCTCCTTTTTGGGATACAAGATATTAATGCTCTAATTTCATAAGAAAAGCTT
452 AACCAAAACCAA-TCT-CTTTTTGGGATACACGATATTAATGCTCTGATTTCATAAGAAAAGCTT
* * * *
4221831 TTTTCTCCTCCTTTTTTTCTTAGAATCAAAGTTTAAACCTTAAA-AGATTCAAACATGGATTTAC
515 TTTTCTCCACC--TTTTTCTTAGAATCAAAGTTTATACCTTAAAGAGAGT-AAACATGGATTTAT
*
4221895 ACAATAATCTCTGTTCTTACAAAGATTGGGCACC
577 GCAATAATCTCTGTTCTTACAAAGATTGGGCACC
* * * * *
4221929 ATAGACACATTATCTTCATTGGGATGCACAATATTGGCGC-ATGGTTATGCAAGAAAAGTTTTTC
1 ATAAACACGTTATCTTCTTTGGGATGCACAATATTGACACAATGGTTATGCAAGAAAAGTTTTTC
* * *
4221993 TTGCCACTTA-TTCCATAAAGCAAAGTTCATTCATCAAATTAGACAAAAATGGAATCATGTAATA
66 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATAAGACAAAAATGGAATCATGTAAAA
* * * * * *
4222057 ATCTCCA-TTTTTTGTGATTAGGAAGCCCAAACATGCTCTCCTCATTGGGATTCATGGTATTAAT
131 ATCTCCATTTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTAGGATGCATGATATTGAT
** * * *
4222121 GCTTTGGTTTTAGGAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGTCCCTTA
196 GCTTTCATTTTAGCAAAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTA
*
4222186 AAAAGAGACAAAGATGGATTCTCATCATGATCTT
261 AAAAGAGACAAAGATGGATTCTCATAATGATCTT
4222220 TGTAGACACC
Statistics
Matches: 1320, Mismatches: 168, Indels: 56
0.85 0.11 0.04
Matches are distributed among these distances:
609 2 0.00
610 114 0.09
611 422 0.32
612 472 0.36
613 201 0.15
614 109 0.08
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (610 bp):
ATAAACACGTTATCTTCTTTGGGATGCACAATATTGACACAATGGTTATGCAAGAAAAGTTTTTC
TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATAAGACAAAAATGGAATCATGTAAAA
ATCTCCATTTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTAGGATGCATGATATTGAT
GCTTTCATTTTAGCAAAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTCCCTTA
AAAAGAGACAAAGATGGATTCTCATAATGATCTTCAAAAACACATTCTATTCACTAGGATACTTG
ATATTGATGTTTAGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTC
GCATGTCAAATGAAACAAACATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACC
AAAACCAATCTCTTTTTGGGATACACGATATTAATGCTCTGATTTCATAAGAAAAGCTTTTTTCT
CCACCTTTTTCTTAGAATCAAAGTTTATACCTTAAAGAGAGTAAACATGGATTTATGCAATAATC
TCTGTTCTTACAAAGATTGGGCACC
Found at i:4236525 original size:22 final size:22
Alignment explanation
Indices: 4236507--4236550 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4236497 CGCAAAAGAA
4236507 AAAAACAAAAAAAATAAAAAAC
1 AAAAACAAAAAAAATAAAAAAC
*
4236529 AAAAAGAAAAAAAATAACAAAA
1 AAAAACAAAAAAAATAA-AAAA
4236551 AGGGTCCGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.86, C:0.07, G:0.02, T:0.05
Consensus pattern (22 bp):
AAAAACAAAAAAAATAAAAAAC
Found at i:4236538 original size:18 final size:17
Alignment explanation
Indices: 4236505--4236552 Score: 71
Period size: 16 Copynumber: 2.8 Consensus size: 17
4236495 TCCGCAAAAG
4236505 AAAAAAACAAAAA-AAA
1 AAAAAAACAAAAAGAAA
*
4236521 TAAAAAACAAAAAGAAA
1 AAAAAAACAAAAAGAAA
4236538 AAAAATAACAAAAAG
1 AAAAA-AACAAAAAG
4236553 GGTCCGGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 12 0.43
17 7 0.25
18 9 0.32
ACGTcount: A:0.85, C:0.06, G:0.04, T:0.04
Consensus pattern (17 bp):
AAAAAAACAAAAAGAAA
Found at i:4237615 original size:37 final size:37
Alignment explanation
Indices: 4237574--4237654 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
4237564 TGCCACAATC
*
4237574 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
1 ATGCATTTATGACATTCATAACATTTCATTTTGCATG
4237611 ATGCATTTATGACATTCATAACATTTCATTTTGCATG
1 ATGCATTTATGACATTCATAACATTTCATTTTGCATG
4237648 ATGCATT
1 ATGCATT
4237655 GGTGCTTCGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (37 bp):
ATGCATTTATGACATTCATAACATTTCATTTTGCATG
Found at i:4238092 original size:28 final size:28
Alignment explanation
Indices: 4238016--4238185 Score: 243
Period size: 28 Copynumber: 6.0 Consensus size: 28
4238006 GACATTCCTC
*
4238016 ACCTTCCAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
* *
4238044 TCTTTTTC-AAAGCCCACAAGTCAGTGGCA
1 AC--CTTCAAAAGCCCACAAGTCAGTGGCA
*
4238073 ACCTTCAAAAGCCCACAAGTTAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
4238101 ACCTTCAAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
* * *
4238129 TCTTTTCAAAAGCTCACAAGTCAGTGGCA
1 AC-CTTCAAAAGCCCACAAGTCAGTGGCA
4238158 ACCTTCAAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA
4238186 TCACAAGTTA
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
27 3 0.02
28 73 0.58
29 47 0.37
30 3 0.02
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (28 bp):
ACCTTCAAAAGCCCACAAGTCAGTGGCA
Found at i:4238137 original size:57 final size:56
Alignment explanation
Indices: 4238017--4238187 Score: 245
Period size: 57 Copynumber: 3.0 Consensus size: 56
4238007 ACATTCCTCA
* * * *
4238017 CCTTCCAAAGCCCACAAGTCAGTGGCATCTTTTTC-AAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAAC--CTTCAAAAGCCCACAAGTCAGTGGCAT
*
4238074 CCTTCAAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAT
* *
4238130 CTTTTCAAAAGCTCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAT
1 C-CTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAT
4238187 C
1 C
4238188 ACAAGTTAGT
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
55 3 0.03
56 22 0.21
57 79 0.76
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (56 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAT
Found at i:4238159 original size:85 final size:85
Alignment explanation
Indices: 4238016--4238185 Score: 297
Period size: 85 Copynumber: 2.0 Consensus size: 85
4238006 GACATTCCTC
*
4238016 ACCTTCCAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAA
*
4238081 AAGCCCACAAGTTAGTGGCA
66 AAGCCCACAAGTCAGTGGCA
*
4238101 ACCTTCAAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAAGCTCACAAGTCAGTGGCAACCTTCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTC-AAAGCCCACAAGTCAGTGGCAACCTTCA
4238165 AAAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
4238186 TCACAAGTTA
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
84 5 0.06
85 76 0.94
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (85 bp):
ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAA
AAGCCCACAAGTCAGTGGCA
Found at i:4238192 original size:16 final size:16
Alignment explanation
Indices: 4238171--4238201 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4238161 TTCAAAAGCC
4238171 CACAAGTCAGTGGCAT
1 CACAAGTCAGTGGCAT
*
4238187 CACAAGTTAGTGGCA
1 CACAAGTCAGTGGCA
4238202 ACCTTCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (16 bp):
CACAAGTCAGTGGCAT
Found at i:4238205 original size:44 final size:44
Alignment explanation
Indices: 4238142--4238231 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
4238132 TTTCAAAAGC
4238142 TCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCA
1 TCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCA
*
4238186 TCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCA
1 TCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCA
4238230 TC
1 TC
4238232 TTTTCTTCAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (44 bp):
TCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCA
Found at i:4238256 original size:31 final size:30
Alignment explanation
Indices: 4238209--4238311 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 30
4238199 GCAACCTTCA
* * *
4238209 AAAGCCCACAAGTCAGTGGCATCTTTTCTTC
1 AAAGTCCACGAGTCAGTGGCATCTCTTC-TC
*
4238240 ATAGTCCACGAGTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGAGTCAGTGGC-ATCTCTTCTC
* * * *
4238271 AAAGTCCATGACTTAGTGGCATCTCTTCCC
1 AAAGTCCACGAGTCAGTGGCATCTCTTCTC
*
4238301 AAACTCCACGA
1 AAAGTCCACGA
4238312 CTCTATGGCA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
30 18 0.30
31 35 0.58
32 7 0.12
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (30 bp):
AAAGTCCACGAGTCAGTGGCATCTCTTCTC
Found at i:4238297 original size:30 final size:30
Alignment explanation
Indices: 4238223--4238321 Score: 101
Period size: 31 Copynumber: 3.2 Consensus size: 30
4238213 CCCACAAGTC
* * * *
4238223 AGTGGCATCTTTTCTTCATAGTCCACGAGTC
1 AGTGGCATCTCTTC-TCAAAGTCCACGACTT
*
4238254 AGTGGCAATCTCTTCTCAAAGTCCATGACTT
1 AGTGGC-ATCTCTTCTCAAAGTCCACGACTT
* *
4238285 AGTGGCATCTCTTCCCAAACTCCACGACTCT
1 AGTGGCATCTCTTCTCAAAGTCCACGACT-T
4238316 A-TGGCA
1 AGTGGCA
4238322 CCTTTTTCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
30 25 0.43
31 26 0.45
32 7 0.12
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.30
Consensus pattern (30 bp):
AGTGGCATCTCTTCTCAAAGTCCACGACTT
Found at i:4238343 original size:34 final size:32
Alignment explanation
Indices: 4238305--4238555 Score: 140
Period size: 34 Copynumber: 7.7 Consensus size: 32
4238295 CTTCCCAAAC
* *
4238305 TCCACGACTCTATGGCACCTTTTTCTTTTCAAAG
1 TCCACAACTCTGTGGCACCTTTTTCTTTT--AAG
4238339 TCCACAACT-TCGTGGCACC-----CTTTTAAG
1 TCCACAACTCT-GTGGCACCTTTTTCTTTTAAG
*
4238366 TCCACAACTCTGTGGCATCTTTTTCCTTTTAAG
1 TCCACAACTCTGTGGCACCTTTTT-CTTTTAAG
* ** *
4238399 TCCATAACTCCATGGTACCTTTTTCCTTTTAAG
1 TCCACAACTCTGTGGCACCTTTTT-CTTTTAAG
* * *
4238432 TCCACGACTCCGTGGCACCCTTTTCCCTTTTAAG
1 TCCACAACTCTGTGGCA-CCTTTT-TCTTTTAAG
* * * * *
4238466 CCCATACCTCCGTGGCATCTTTTT-TTCCTGTAAG
1 TCCACAACTCTGTGGCACCTTTTTCTT--T-TAAG
* * *
4238500 TCCACAACT-TCGTGGAATCCTTTTTTCCTGTAAG
1 TCCACAACTCT-GTGGCA-CC-TTTTTCTTTTAAG
* * *
4238534 TCCACAATTCCGTGGCAACTTT
1 TCCACAACTCTGTGGCACCTTT
4238556 AAGTCCAATA
Statistics
Matches: 168, Mismatches: 31, Indels: 38
0.71 0.13 0.16
Matches are distributed among these distances:
27 19 0.11
28 1 0.01
29 5 0.03
31 2 0.01
32 3 0.02
33 57 0.34
34 74 0.44
35 1 0.01
36 5 0.03
37 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (32 bp):
TCCACAACTCTGTGGCACCTTTTTCTTTTAAG
Found at i:4238395 original size:33 final size:33
Alignment explanation
Indices: 4238357--4238555 Score: 186
Period size: 34 Copynumber: 5.9 Consensus size: 33
4238347 TTCGTGGCAC
*
4238357 CCTTTTAAGTCCACAACTCTGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
4238390 CCTTTTAAGTCCATAACTCCATGGTACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
* * *
4238423 CCTTTTAAGTCCACGACTCCGTGGCACCCTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
* * *
4238457 CCTTTTAAGCCCATACCTCCGTGGCATCTTTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATC--TTTTT
* * *
4238492 CC-TGTAAGTCCACAACTTCGTGGAATCCTTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAT-C-TTTTT
* * *
4238526 CC-TGTAAGTCCACAATTCCGTGGCAACTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTT
4238556 AAGTCCAATA
Statistics
Matches: 136, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
32 3 0.02
33 52 0.38
34 74 0.54
35 7 0.05
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
Found at i:4238725 original size:49 final size:49
Alignment explanation
Indices: 4238552--4238886 Score: 300
Period size: 49 Copynumber: 6.8 Consensus size: 49
4238542 TCCGTGGCAA
* * *
4238552 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTT-AT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* *
4238600 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT---CAT
* * * * ** *
4238652 CTTTAAGTCTAATGTCACTAGCCTTGAATCAGCACATTAACACGTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * *
4238701 CTTTAAGTCCGATATCGCTGGCCTTAAATCAGCACATTGGCACCTTAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* ** *
4238750 CTTTAAGTCCGATATCATTGGCCTTGAATCAGCATATTGGCATCCTTAACAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CAT
* * * * ** **
4238802 -TCCTAAGCCCAATGTCACTGGCCTTGTCTCAGCACATTGGCA--TTTTT
1 CT-TTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
4238849 CTTCAAGTCTAATGTCGCTGGCCCTGAATCAGCACATT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT
4238887 ATCATTCTTC
Statistics
Matches: 233, Mismatches: 45, Indels: 19
0.78 0.15 0.06
Matches are distributed among these distances:
47 29 0.12
48 42 0.18
49 82 0.35
50 4 0.02
51 1 0.00
52 75 0.32
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (49 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
Found at i:4238732 original size:101 final size:97
Alignment explanation
Indices: 4238552--4238783 Score: 295
Period size: 101 Copynumber: 2.4 Consensus size: 97
4238542 TCCGTGGCAA
* * ** *
4238552 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTATCTTTAAGACCAATGTCG
1 CTTTAAGTCCAATATCACTAGCCTTGAATCAGCACATTAACATCTTATCTTTAAGACCAATATCG
*
4238617 CTGGCCTTGAATCAGCACATTGGCACCTTAACCAT
66 CTGGCCTTAAATCAGCACATTGGCACCTT-A--AT
* * * *
4238652 CTTTAAGTCTAATGTCACTAGCCTTGAATCAGCACATTAACA-CGTTCATCTTTAAGTCCGATAT
1 CTTTAAGTCCAATATCACTAGCCTTGAATCAGCACATTAACATC-TT-ATCTTTAAGACCAATAT
4238716 CGCTGGCCTTAAATCAGCACATTGGCACCTTAAT
64 CGCTGGCCTTAAATCAGCACATTGGCACCTTAAT
* * *
4238750 CTTTAAGTCCGATATCATTGGCCTTGAATCAGCA
1 CTTTAAGTCCAATATCACTAGCCTTGAATCAGCA
4238784 TATTGGCATC
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
98 31 0.27
99 1 0.01
100 39 0.34
101 44 0.38
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (97 bp):
CTTTAAGTCCAATATCACTAGCCTTGAATCAGCACATTAACATCTTATCTTTAAGACCAATATCG
CTGGCCTTAAATCAGCACATTGGCACCTTAAT
Found at i:4238826 original size:150 final size:149
Alignment explanation
Indices: 4238552--4238839 Score: 382
Period size: 150 Copynumber: 1.9 Consensus size: 149
4238542 TCCGTGGCAA
* * * * *
4238552 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTATCTTTAAGACCAATGTCG
1 CTTTAAGTCCAATATCGCTAGCCTTAAATCAGCACATTGGCACCTTATCTTTAAGACCAATATCA
* * *
4238617 CTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTTTAAGTCTAATGTCACTAGCCTTGAATC
66 CTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTCTAAGCCCAATGTCACTAGCCTTGAATC
4238682 AGCACATTAACACGTTCAT
131 AGCACATTAACACGTTCAT
* * * *
4238701 CTTTAAGTCCGATATCGCTGGCCTTAAATCAGCACATTGGCACCTTAATCTTTAAGTCCGATATC
1 CTTTAAGTCCAATATCGCTAGCCTTAAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATATC
* * * *
4238766 ATTGGCCTTGAATCAGCATATTGGCATCCTTAA-CAT-TCCTAAGCCCAATGTCACTGGCCTTGT
65 ACTGGCCTTGAATCAGCACATTGGCA-CCTTAACCATCT-CTAAGCCCAATGTCACTAGCCTTGA
*
4238829 CTCAGCACATT
128 ATCAGCACATT
4238840 GGCATTTTTC
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
149 42 0.35
150 71 0.60
151 6 0.05
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (149 bp):
CTTTAAGTCCAATATCGCTAGCCTTAAATCAGCACATTGGCACCTTATCTTTAAGACCAATATCA
CTGGCCTTGAATCAGCACATTGGCACCTTAACCATCTCTAAGCCCAATGTCACTAGCCTTGAATC
AGCACATTAACACGTTCAT
Found at i:4245815 original size:611 final size:611
Alignment explanation
Indices: 4242919--4246313 Score: 4503
Period size: 611 Copynumber: 5.5 Consensus size: 611
4242909 CGTTGTGATA
*
4242919 ATCTTCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
1 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * *
4242984 CTTTTCTTGCCACGATTCTCTTTATAATTTGAGTTCGTAGGTCAAATGAAACAAACATGAATTCT
66 CTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGAATTCT
* * * * * *
4243049 TATAATAAGCTTTATTCTTTCCATGATTTGGCAA-CAAAACGCATTCTCTTTCTTCGGATACACG
131 TATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCTTT-TTGGGATACACG
* * * *
4243113 ATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACAGTTTTCCATAGAATCAATGTTT
195 ATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTT
* *
4243178 ATACCTTAAATGAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCA
260 ATACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCA
* * * * *
4243243 TAAACACGTTATCTTCTTTGGGATGCACAATATTGACGTATT-GTTTTCGCAAGAAAAG-ATTT-
325 TAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTAT-GCAAGAAAAGTTTTTC
* * * *
4243305 TTGCCACCTATTTCCTTAAAGCAAAGTTCA-TCTATCAAATAATACAAAAATGGATTCTTGTAAT
389 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTC-GTCAAATAATACAAAAATGGAATCATGTAAT
*
4243369 AATCTCCATTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATGGA
453 AATCTCCA-TTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGA
* * * **
4243434 TGC-TTCGATTTTTGCAAGAAATGGTTTTCTTTCAACTACCTTTTTAAAATAAAAGTTTTTCCC-
517 TGCTTTC-ATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCT
* * *
4243497 TTAAAAGAGAC--AGATGAATTCTCATACTA
581 TTAAAAGAGACAAAGATGGATTCTCATAATG
* * * *
4243526 ATCTCCAAAAACACATACTATTCATTGGGATATAGGATATTGATGTTTTGATTATATAAGAAAAG
1 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * * *
4243591 CTTTTTTTGCCATGATTTTCCTTACAATTTGAGCTT-TTATGTCAAATGAAACAAACAT-AGATT
66 CTTTTCTTGCCACGATTTTCCTTATAATTTGAG-TTCGTATGTCAAATGAAACAAACATGA-ATT
* * *
4243654 CTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTTCTTATTAGGAAACA
129 CTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTC-TCTTTTTGGGATACA
* * * * * ** * *
4243719 CGATATTAACGCCTTGATTTCATAAGAAATGCTTCTTTCTGCACTATTTTCCTTGGAATCAATGT
193 CGATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGT
* * * * * *
4243784 TTATACCTTAAATGAGACAATCATGGATTTACATAATAATCTCCAATCTTTCAAAGATTGTGCAC
258 TTATACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCAC
* * * *
4243849 CATAAACAAGTTCTCTTCATTAGGATGCACAATATTGACT-CATTGGTTATGCAAGAAAAGTGTT
323 CATAAACACGTTATCTTCATTGGGATGCACAATATTGA-TGCATTGGTTATGCAAGAAAAGTTTT
* * ** *
4243913 TCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAACAATACAAAAATGGGTTCTTGTAA
387 TCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGAATCATGTAA
* *
4243978 TAATCTCTATTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGAATGCATGATATTG
452 TAATCTCCA-TTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTG
*
4244043 ATGC-TTCGATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTG-TCC
516 ATGCTTTC-ATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCC
4244106 TTTAAAAGAGACAAAGATGGATTCTCATAATG
580 TTTAAAAGAGACAAAGATGGATTCTCATAATG
* * *
4244138 ATCTCCAAAAACATATTCTATTTATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
1 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * * * *
4244203 CTTTTCTTTCCACAATTTTCCTTATGATTTGAGTTCGTATGTCAAATGAAACAAAAATTG-ATTT
66 CTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA-TGAATTC
* * * * *
4244267 TTACAATAATCTTTATTCTTTTCTTGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATATAT
130 TTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCT-CTTTTTGGGATACAC
* *
4244332 GATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCAACGTTTTCCTTAGAATCAAAGTT
194 GATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTT
* * * * * *
4244397 TATACCTGAAATGTGGCAAATATGGATTTACGTAATAATCTCCGTTCTTTCATTGATTGGGCTCC
259 TATACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACC
* * * * *
4244462 ACAAACACGTTATCTTCTTTGGAATGCACAATATTGATGCATTGGTTACGCAACAAAAGCTTTTT
324 ATAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAG-TTTTT
* * * *
4244527 -TTGCCACTTATTTCCTTGAAGCAAAGTTTATCCGTCAAAGAATACAAAAATGGATTCTTGAAAA
388 CTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAAT-G------G----
* * *
4244591 ATCTCCATTTTCCATTGTAAAAATCTCCATTTTTATGTGATTAGGTAGCCAAAACAAGTTCTCTT
442 A-----A---T-CA-TGTAATAATCTCCATTTTT-TGTGATTAGGTAGCCAAAACACGCTCTCTT
* * * * * * *
4244656 CATAGGAATGCATGATATTGATGCTTTCATTTTCGTAAAAAATGCTTTTCTTTCCACGACC-ATT
496 CATTGGGATGCATGATATTGATGCTTTCATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTT
* *
4244720 TAAAATCAAAGTTTGTCCC-TTGAAAGAGACAAAGATGGATTCTCATAATG
561 TAAAATCAAAGTTTGCCCCTTTAAAAGAGACAAAGATGGATTCTCATAATG
* * * * *
4244770 ATCTTCAAAAACACATTCTATACACTAGGATACAAGATATTGATGTTTAGATTATATAAGAAAAG
1 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
** * *
4244835 CTTCACTTACCACGATTTTCCTTATAATTTGAGTTCATATGTCAAATGAAACAAACATTG-ATTC
66 CTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA-TGAATTC
* * * *
4244899 TTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAACACATTCCCCTTATTGGGATACAT
130 TTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATT-CTCTTTTTGGGATACAC
* * * * *
4244964 GATATTAATGCTTTAATTTCATAAAAAAAGCTTTTTTCTCCATCTTTTTCCGTAGAATCAAAGTT
194 GATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTT
* * * * * *
4245029 TATACCGTAAATGAGGCAAACATGGATTTACGCAATAATCTCTATTCCTACAAGGATTGGGCACC
259 TATACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACC
* * *
4245094 ATAAACACGTTATCTTCATTGGGATGCACAATAGTGATGCATTAGTTATGCCAGAAAAGTTTTTC
324 ATAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTC
* * * *
4245159 TTGCCACTTATTTCCTTAGAGCAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATA
389 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGAATCATGTAATA
* * * * * *
4245224 AGCTCCATTATTTGTGATTAAGAAGCCTAAACATGCTCTCTTCATTGGGATGCATGATATTGATG
454 ATCTCCATTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGATG
*
4245289 CTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTA
519 CTTTCATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTA
4245354 AAAGAGACAAAGATGGATTCTCATAATG
584 AAAGAGACAAAGATGGATTCTCATAATG
*
4245382 ATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTTTGATTATATAAGAAAAG
1 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * *
4245447 CTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTTAAATGAAACAAACATGAATTCT
66 CTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGAATTCT
* * * * * *
4245512 TATAATAAGCTTCATTCTTTCCATGATTTGGCAA-CAAAACGCATTCTCTTTCTTGGGAAACATG
131 TATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCTTT-TTGGGATACACG
*
4245576 ATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTT
195 ATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTT
* * ** *
4245641 ATACCTTAAATAAGGCAAACATGGATTTATGTAATAATCTCTGTTCTTTCAATGATTAGGCACCA
260 ATACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCA
* *
4245706 TAAACACATTATCTTCATTGGGATGCACAATATTGATGCATTCGTTATGCAAGAAAAGTTTTTCT
325 TAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCT
* *
4245771 TACCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAATGGAATCATGTAATAA
390 TGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGAATCATGTAATAA
* * * * *
4245836 TCTCCATTTTTTGTGATTTGGAAGCCCAAAC-CTGCTCTCTTCATTGGGATGCATGATTTTAATG
455 TCTCCATTTTTTGTGATTAGGTAGCCAAAACAC-GCTCTCTTCATTGGGATGCATGATATTGATG
* * * *
4245900 CTTTGATTTTTGCAAGAAATGTTTTTCTTTACACTACCTTTTTAAAATCAAAGTTTGCCCCTTAA
519 CTTTCATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTA
* *
4245965 AAAGAGACAAAGATGGATGCCCATAATG
584 AAAGAGACAAAGATGGATTCTCATAATG
* *
4245993 ATCTACAAAAACACATTCTATTTATT-GGATACATGATATTGATGTTTTGATTATATAAGAAAAG
1 ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
* * *
4246057 CTTTTGTTGTCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCT
66 CTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGAATTCT
* * * *
4246122 TACAATAATCTTCATTCTTTTCTTGATAAGGCAACCAAAACACGTTCTTCTTTTTGGGATACACG
131 TATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTC-TCTTTTTGGGATACACG
*
4246187 ATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTT
195 ATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTT
* * *
4246252 ATACCTTAAATGGGGGAAACATGGATTTACGAAATAATCTCCATTCTTTCAATGATTGGGCA
260 ATACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCA
4246314 TGATGTTTAG
Statistics
Matches: 2446, Mismatches: 291, Indels: 98
0.86 0.10 0.03
Matches are distributed among these distances:
606 1 0.00
607 143 0.06
608 182 0.07
609 13 0.01
610 392 0.16
611 604 0.25
612 567 0.23
613 7 0.00
616 1 0.00
619 1 0.00
621 1 0.00
625 1 0.00
631 7 0.00
632 428 0.17
633 95 0.04
634 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (611 bp):
ATCTCCAAAAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATATAAGAAAAG
CTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGAATTCT
TATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCTTTTTGGGATACACGA
TATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTA
TACCTTAAATGAGGCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATTGGGCACCAT
AAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTT
GCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGAATCATGTAATAAT
CTCCATTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGATGCT
TTCATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTAAA
AGAGACAAAGATGGATTCTCATAATG
Found at i:4246644 original size:283 final size:282
Alignment explanation
Indices: 4246032--4246878 Score: 1327
Period size: 283 Copynumber: 3.0 Consensus size: 282
4246022 TACATGATAT
* * * * ** *
4246032 TGATGTTTTGATTATATAAGAAAAGCTTTTGTTGTCACGATTTTCCTTATAATTTGAGTTCGTAT
1 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
* ** *
4246097 GTCAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTTCTTGATAAGGCAACCAAAA
66 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
* * * * *
4246162 CACGTTCTTCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
131 CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
* *
4246227 ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGGGGGAAACATGGATTTACGA-AATAATC
196 ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTAC-ACAATAATC
4246291 TCCATTCTTTCAATGATTGGGCA
260 TCCATTCTTTCAATGATTGGGCA
* *
4246314 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATCATTTTCCTTATAATATGAGTTCATAT
1 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
* * *
4246379 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTTATTCATTTCACAATTAGGCAACCAAAA
66 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
* * *
4246444 CACATTCTTCTTATCGGGATACATGATATTAATGGTTTGATTTAATAAAAAAAGCTTTTTTCTCC
131 CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
* *
4246509 ACCATTTTTCCTTAGAATCAAAGTTTATGCCTTAAATGAGGCAAACATGGATTTACACAATAATC
196 ACC-GTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACACAATAATC
*
4246574 CCCATTCTTTCAATGATTGGGCA
260 TCCATTCTTTCAATGATTGGGCA
4246597 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
1 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
*
4246662 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTTTTTTCACGATTAGGCAACCAAAA
66 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
* * * *
4246727 CACATTCTCCTTATTAGGATACATGACATTAGTGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
131 CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
* *
4246792 ACCGTTTTCCTTAGAATCAAAGTATATACCTTAAATGAGTCAAACATGGATTTACACAATAATCT
196 ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACACAATAATCT
* *
4246857 CTATTCTTTCAATTATTGGGCA
261 CCATTCTTTCAATGATTGGGCA
4246879 CCATAAATGC
Statistics
Matches: 515, Mismatches: 48, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
282 253 0.49
283 262 0.51
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (282 bp):
TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACACAATAATCT
CCATTCTTTCAATGATTGGGCA
Found at i:4247763 original size:20 final size:20
Alignment explanation
Indices: 4247740--4247806 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
4247730 CACACCCAGA
4247740 TGTATCGATACATGCTGCTT
1 TGTATCGATACATGCTGCTT
4247760 TGTATCGATACA-------T
1 TGTATCGATACATGCTGCTT
4247773 TGTATCGATACATGCTGCTT
1 TGTATCGATACATGCTGCTT
4247793 TGTATCGATACATG
1 TGTATCGATACATG
4247807 GACAAATTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 13 0.32
20 27 0.68
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATGCTGCTT
Found at i:4247777 original size:13 final size:13
Alignment explanation
Indices: 4247759--4247785 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4247749 ACATGCTGCT
4247759 TTGTATCGATACA
1 TTGTATCGATACA
4247772 TTGTATCGATACA
1 TTGTATCGATACA
4247785 T
1 T
4247786 GCTGCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4247782 original size:33 final size:33
Alignment explanation
Indices: 4247740--4247805 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
4247730 CACACCCAGA
4247740 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATGCTGCTTTGTATCGATACAT
4247773 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATGCTGCTTTGTATCGATACAT
4247806 GGACAAATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATGCTGCTTTGTATCGATACAT
Found at i:4255912 original size:22 final size:21
Alignment explanation
Indices: 4255887--4255935 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
4255877 TTACATGAAG
*
4255887 GGGGAGAAGATAATTGTTTAA
1 GGGGAGAAGATAATCGTTTAA
4255908 GGGG-G-AGATAATCGTTTAAA
1 GGGGAGAAGATAATCGTTT-AA
4255928 GGGGAGAA
1 GGGGAGAA
4255936 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 11 0.46
20 7 0.29
21 5 0.21
22 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.39, T:0.22
Consensus pattern (21 bp):
GGGGAGAAGATAATCGTTTAA
Found at i:4257745 original size:611 final size:610
Alignment explanation
Indices: 4256572--4258279 Score: 2553
Period size: 611 Copynumber: 2.8 Consensus size: 610
4256562 CATTTTCCAT
* * * * * *
4256572 TGTAAAAATCTCCATTTTTATGTGATTAGGTAGCCAAAACAAGTTCTCTTCATAGGAATGCATGA
1 TGTAATAATCTCCATTTTT-TGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGA
* * * * *
4256637 TATTGATGCTTTCATTTTCGTAAAAAATGCTTTTCTTTCCACGACC-ATTTAAAATCAAAGTTTG
65 TATTGATGCTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTG
* * * * *
4256701 TCCC-TTGAAAGAGACAAAGATGGATTCTCATAATGATCTTCAAAAACACATTCTATACACTAGG
130 CCCCTTTAAAAGAGACAAAGATGGATTCTCATAATGATCTACAAAAACACATTCTATTCATTAGG
* ** *
4256765 ATACAAGATATTGATGTTTAGATTATATAAGAAAAGCTTCACTTACCACGATTTTCCTTATAATT
195 ATACAAGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATT
*
4256830 TGAGTTCATATGTCAAATGAAACAAACATTGATTCTTATAATAATCTTCATTCTTTTCACGATTA
260 TGAGTTCATATGTCAAATGAAACAAACA-TGATTCTTATAATAATCTTCATTCTTTTCATGATTA
* * *
4256895 GGCAACCAAAACACATTCCCCTTATTGGGATACATGATATTAATGCTTTAATTTCAT-AGAAAAA
324 GGCAACCAAAACACATT-CTCTTTTTGGGATACATGATATTAATGCTTTGATTTCATAAG-AAAA
* * * *
4256959 GCTTTTTTCTCCATCTTTTTCCGTAGAATCAAAGTTTATACCGTAAATGAGGCAAACATGGATTT
387 GCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTT
* * * * *
4257024 ACGCAATAATCTCTATTCCTACAAGGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCAC
452 ACGAAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATTGGGATGCAC
* * *
4257089 AATAGTGATGCATTAGTTATGCCAGAAAAGTTTTTCTTGCCACTTATTTCCTTAGAGCAAAGTTC
517 AATAGTGATGCATTAGTTATGCAAGAAAAGTTTTTCTTACCACTTATTTCCTTAAAGCAAAGTTC
*
4257154 ATTTGTCAAATAAGACAAAAAAGGAATCA
582 ATTCGTCAAATAAGACAAAAAAGGAATCA
* * * *
4257183 TGTAATAAGCTCCATTATTTGTGATTAAGAAGCCTAAACATGCTCTCTTCATTGGGATGCATGAT
1 TGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGAT
4257248 ATTGATGCTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGC
66 ATTGATGCTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGC
*
4257313 CCCTTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGA
131 CCCTTTAAAAGAGACAAAGATGGATTCTCATAATGATCTACAAAAACACATTCTATTCATTAGGA
* *
4257378 TACAGGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTT
196 TACAAGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTT
* * * *
4257443 GAGTTCATATGTTAAATGAAACAAACATGAATTCTTATAATAAGCTTCATTCTTTCCATGATTTG
261 GAGTTCATATGTCAAATGAAACAAACATG-ATTCTTATAATAATCTTCATTCTTTTCATGATTAG
* * *
4257508 GCAA-CAAAACGCATTCTCTTTCTTGGGAAACATGATATGAATGCTTTGATTTCATAAGAAAAGC
325 GCAACCAAAACACATTCTCTTT-TTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGC
* *
4257572 TTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATAAGGCAAACATGGATTTAT
389 TTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTAC
* * *
4257637 GTAATAATCTCTGTTCTTTCAATGATTAGGCACCATAAACACATTATCTTCATTGGGATGCACAA
454 GAAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATTGGGATGCACAA
* *
4257702 TATTGATGCATTCGTTATGCAAGAAAAGTTTTTCTTACCACTTATTTCCTTAAAGCAAAGTTCAT
519 TAGTGATGCATTAGTTATGCAAGAAAAGTTTTTCTTACCACTTATTTCCTTAAAGCAAAGTTCAT
*
4257767 TCGTCAAATAAGACAAAAATGGAATCA
584 TCGTCAAATAAGACAAAAAAGGAATCA
* * *
4257794 TGTAATAATCTCCATTTTTTGTGATTTGGAAGCCCAAACCTGCTCTCTTCATTGGGATGCATGAT
1 TGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGAT
* * * * * *
4257859 TTTAATGCTTTGATTTTTGCAAGAAATGTTTTTCTTTACACTACCTTTTTAAAATCAAAGTTTGC
66 ATTGATGCTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGC
* * * *
4257924 CCCTTAAAAAGAGACAAAGATGGATGCCCATAATGATCTACAAAAACACATTCTATTTATT-GGA
131 CCCTTTAAAAGAGACAAAGATGGATTCTCATAATGATCTACAAAAACACATTCTATTCATTAGGA
* *
4257988 TACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGTCACGATTTTCCTTATAATTT
196 TACAAGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTT
* * * *
4258053 GAGTTCGTATGTCAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTTCTTGATAAG
261 GAGTTCATATGTCAAATGAAACAAACAT-GATTCTTATAATAATCTTCATTCTTTTCATGATTAG
* * *
4258118 GCAACCAAAACACGTTCTTCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGT
325 GCAACCAAAACACATTC-TCTTTTTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGC
* *
4258183 TTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGGGGGAAACATGGATTTAC
389 TTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTAC
*
4258248 GAAATAATCTCCATTCTTTCAATGATTGGGCA
454 GAAATAATCTCTATTCTTTCAATGATTGGGCA
4258280 TGATGTTTAG
Statistics
Matches: 990, Mismatches: 99, Indels: 16
0.90 0.09 0.01
Matches are distributed among these distances:
610 208 0.21
611 598 0.60
612 184 0.19
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (610 bp):
TGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGAT
ATTGATGCTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGC
CCCTTTAAAAGAGACAAAGATGGATTCTCATAATGATCTACAAAAACACATTCTATTCATTAGGA
TACAAGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTT
GAGTTCATATGTCAAATGAAACAAACATGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
CAACCAAAACACATTCTCTTTTTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGCTT
TTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACGA
AATAATCTCTATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATTGGGATGCACAATA
GTGATGCATTAGTTATGCAAGAAAAGTTTTTCTTACCACTTATTTCCTTAAAGCAAAGTTCATTC
GTCAAATAAGACAAAAAAGGAATCA
Found at i:4258610 original size:283 final size:282
Alignment explanation
Indices: 4257998--4258844 Score: 1336
Period size: 283 Copynumber: 3.0 Consensus size: 282
4257988 TACATGATAT
* * * ** *
4257998 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTGTCACGATTTTCCTTATAATTTGAGTTCGTAT
1 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
* ** *
4258063 GTCAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTTCTTGATAAGGCAACCAAAA
66 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
* * * * *
4258128 CACGTTCTTCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
131 CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
* *
4258193 ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGGGGGAAACATGGATTTACGA-AATAATC
196 ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTAC-ACAATAATC
4258257 TCCATTCTTTCAATGATTGGGCA
260 TCCATTCTTTCAATGATTGGGCA
* *
4258280 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATCATTTTCCTTATAATATGAGTTCATAT
1 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
* * *
4258345 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTTATTCATTTCACAATTAGGCAACCAAAA
66 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
* * *
4258410 CACATTCTTCTTATCGGGATACATGATATTAATGGTTTGATTTAATAAAAAAAGCTTTTTTCTCC
131 CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
* *
4258475 ACCATTTTTCCTTAGAATCAAAGTTTATGCCTTAAATGAGGCAAACATGGATTTACACAATAATC
196 ACC-GTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACACAATAATC
*
4258540 CCCATTCTTTCAATGATTGGGCA
260 TCCATTCTTTCAATGATTGGGCA
4258563 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
1 TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
*
4258628 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTTTTTTCACGATTAGGCAACCAAAA
66 GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
* * * *
4258693 CACATTCTCCTTATTAGGATACATGACATTAGTGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
131 CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
* *
4258758 ACCGTTTTCCTTAGAATCAAAGTATATACCTTAAATGAGTCAAACATGGATTTACACAATAATCT
196 ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACACAATAATCT
* *
4258823 CTATTCTTTCAATTATTGGGCA
261 CCATTCTTTCAATGATTGGGCA
4258845 CCATAAATGC
Statistics
Matches: 516, Mismatches: 47, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
282 254 0.49
283 262 0.51
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (282 bp):
TGATGTTTAGGTTATATAAGAAAAGCTTTTCTTGCCATAATTTTCCTTATAATTTGAGTTCATAT
GTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCACGATTAGGCAACCAAAA
CACATTCTTCTTATTGGGATACATGATATTAATGGTTTGATTTCATAAGAAAAGCTTTTTTCTCC
ACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACACAATAATCT
CCATTCTTTCAATGATTGGGCA
Found at i:4259729 original size:20 final size:20
Alignment explanation
Indices: 4259706--4259772 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
4259696 CACACCCAGA
4259706 TGTATCGATACATGCTGCTT
1 TGTATCGATACATGCTGCTT
4259726 TGTATCGATACA-------T
1 TGTATCGATACATGCTGCTT
4259739 TGTATCGATACATGCTGCTT
1 TGTATCGATACATGCTGCTT
4259759 TGTATCGATACATG
1 TGTATCGATACATG
4259773 GACAAATTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 13 0.32
20 27 0.68
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATGCTGCTT
Found at i:4259743 original size:13 final size:13
Alignment explanation
Indices: 4259725--4259751 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4259715 ACATGCTGCT
4259725 TTGTATCGATACA
1 TTGTATCGATACA
4259738 TTGTATCGATACA
1 TTGTATCGATACA
4259751 T
1 T
4259752 GCTGCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4259748 original size:33 final size:33
Alignment explanation
Indices: 4259706--4259771 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
4259696 CACACCCAGA
4259706 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATGCTGCTTTGTATCGATACAT
4259739 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATGCTGCTTTGTATCGATACAT
4259772 GGACAAATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATGCTGCTTTGTATCGATACAT
Found at i:4262498 original size:611 final size:611
Alignment explanation
Indices: 4260589--4263071 Score: 3349
Period size: 611 Copynumber: 4.1 Consensus size: 611
4260579 TGAGCTTTCA
* * * * * *
4260589 ATGGATTTACGCAATAATCTCCATTCATTCAATGATTGTGCGCCATAAACAGGTTCTCTTCATTA
1 ATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTG
* * *
4260654 GGATGCACAATATTGACGCATGGGTTATGCAAGAAAAG-TTTTCTTTCCACTTATTTCCTTAAAG
66 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* * * * *
4260718 CAAAGTTCATTTGTCAACTAAGACAAAAATGGATTCATGTAATAATCCCCATTTTTTGTGATTAG
131 CAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATAATCTCCATTATTTGTGATTAG
* * * *
4260783 GAAGCCAAAACATGCTCTCTTCATTAGGATGCATGATATTGATGCTTTGACTATCGCAAGAAATA
196 GAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATG
* * * * *
4260848 TTTTTCTTTCCACAACCTTTTTAAATTCAAAGTTTGCCCCGTAAAAAAGACAATGATGGATTCTC
261 TTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACAAAGATGGATTCTC
* * * *
4260913 ATATTGATCTACAGAAACACATTCTATCCATTAGGATACATGG-CATTGATGTTTTGATTA-ATA
326 ATAATGATCTACAAAAACACATTCTATTCATTAGGATACA-GGATATTGATGTTTTGATTATATA
* * * *
4260976 AGAAAAGCTTTTCTTGTCACAATTTTTCTTACAATTGGAGTTCATTTGTCAAATGAAACAAACAT
390 AGAAAAGCTTTTCTTGTCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAACAAACA-
* * * * * *
4261041 TG-ATTCTTATAATAATCTTTATTCTTTTCAAGATTAGGCAACCAAAACAAATTCGCCTTT-TTG
454 TGAATTCTTATAATAAGCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTC-TCTTTCTTG
* * * ** * *
4261104 GGATACACTATATTAATGCTTTGGTTTCATAAGAATGGCTTTTATCTCCACCGTTTTTCTTAGAA
518 GGATACACGATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAA
* *
4261169 TCAAAGTTTATACCTTACATGAGACAAAC
583 TCAAAGTTTATACCTTAAATGAGGCAAAC
* * * * * *
4261198 ATGGAATTAAGTAATAATCTCTATTCTTTCAATGATTGGGCACCTTAAAAAGGTTATCTTCATTT
1 ATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTG
* * * * *
4261263 AGATGCACAATATTGATGCATTGGTTATGCAAAAAAAGCTTTCCTTGCCACTTATTTCCTCAAAG
66 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* * * ** * * *
4261328 GAAAGTTCATTTGTGAAAGACTAGAAAAAA-GAATTCTTATAATAATCTCCATTACTTTGTGATT
131 CAAAGTTCATTTGTCAAATAAGACAAAAAAGGAA-TCATGTAATAATCTCCATTA-TTTGTGATT
* ** * *
4261392 AGGCAGCCAAAACACACTCTCTCCATTGGGATGCATGATATTGATACTTTGATTTTCGCAAGAAA
194 AGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAA
* * * * * *
4261457 TGGTTTTCTTTCAACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGACACAAAGATGAATTC
259 TGTTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACAAAGATGGATTC
* * *
4261522 TCATAATGATCTCCAAGAACACATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATAT
324 TCATAATGATCTACAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTTTGATTATAT
*
4261587 AAGAAAAGCTTTTCTTGTCACGA-TTCTCTTTATAATTTATGAGTTCATATGTCAAATGAAACAA
389 AAGAAAAGCTTTTCTTGTCACGATTTTTC-TTATAA-TT-TGAGTTCATATGTCAAATGAAACAA
* * ** *
4261651 ACATGAATTCTTATAATAAGCTTCATTCTTTCCACGATTAGG-AAACAAAATGCATTCTTTTTCT
451 ACATGAATTCTTATAATAAGCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCTTTCT
* *
4261715 TAGGATACACGATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAG
516 TGGGATACACGATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAG
* * *
4261780 AATCAATGTTTATACCTTAAAAGAGGTAAAC
581 AATCAAAGTTTATACCTTAAATGAGGCAAAC
* * * * * *
4261811 ATGGATTTACGCAATAATCTCTATTCCTACAAGGATTGGGTACCGTAAACATGTTATCTTCATTG
1 ATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTG
** *
4261876 GGATGCACAATAGCGACT-CATTAGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAA
66 GGATGCACAATATTGA-TGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAA
* *
4261940 GCAAAGTTCATTTGTCAAATAAGCCAAAAAAGGAATCATGTAATAAGCTCCATTATTTGTGATTA
130 GCAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATAATCTCCATTATTTGTGATTA
* * * *
4262005 GGAAGCCTAAACATGCTATCTTCATTGGGATGCATGATATTGATGCTTTCATTTTAGCAAGAAAT
195 GGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAAT
*
4262070 GCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTAAAAGAGACAAAGATGGATTC
260 GTTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCC-TTAAAAGAGACAAAGATGGATTC
* * *
4262135 TCATAATGATCTCCAAAAACACATTCTATTCATTAGGATATAGGATATTGGTGTTTTGATTATAT
324 TCATAATGATCTACAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTTTGATTATAT
* *
4262200 AAGAAAAGCTTTTCTTGCCACGA-TTTTCTTTATAATTTGAGTTCATATGTTAAATGAAACAAAC
389 AAGAAAAGCTTTTCTTGTCACGATTTTTC-TTATAATTTGAGTTCATATGTCAAATGAAACAAAC
* * *
4262264 ATGAATTCTTATAATAAGCTTCATTCTTTCCATGATTTGGCAA-CAAAACGCACTCTCTTTCTTG
453 ATGAATTCTTATAATAAGCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCTTTCTTG
* * *
4262328 GGAAACATGATATGAAAGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAA
518 GGATACACGATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAA
4262393 TCAAAGTTTATACCTTAAATGAGGCAAAC
583 TCAAAGTTTATACCTTAAATGAGGCAAAC
* * * *
4262422 ATGGATTTACGTAATAATCTCTGTTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTG
1 ATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTG
* *
4262487 GGATACACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTTCCACTTATTTCCTTAAAG
66 GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
* * * * *
4262552 CAAAGTTCATTCGTCAAATAAGACAAAAATGGAATCATCTAATAATCTCCATTTTTTGTGATTTG
131 CAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATAATCTCCATTATTTGTGATTAG
* * * *
4262617 GAAGCCCAAATATGCTCTCTTCATTGGGATGCATGATATTAATGCTTTGATTTTTGCAAGAAATG
196 GAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATG
* * *
4262682 TTTTTCTTTACACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAAGAGACAAAGATGGATGCC
261 TTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTT-AAAAGAGACAAAGATGGATTCT
* * * *
4262747 CATAATGATCTACAAAAACACATTCCATTTATTA-GATACATGATATTGATATTTTGATTATATA
325 CATAATGATCTACAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTTTGATTATATA
* * *
4262811 AGAAAAGCTTTTCTTGTCACGATTTTTCTTATAATTTGAGTTCGTATGTCAAATAAAACAACCAT
390 AGAAAAGCTTTTCTTGTCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAACAAACAT
* * * * * * * *
4262876 GGATTCTTACAATAATCTTCATTC-TT-CTTGATAAGGCAACCAAAACACTTTTTCTTGTTTTTG
455 GAATTCTTATAATAAGCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTC-T-TTCTTG
* * *
4262939 GGATACACGATATTAATGCATTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAA
518 GGATACACGATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAA
4263004 TCAAAGTTTATACCTTAAATGAGGCAAAC
583 TCAAAGTTTATACCTTAAATGAGGCAAAC
4263033 ATGGATTTACGCAATAATCTCCT-TTCTTTCAATGATTGG
1 ATGGATTTACGCAATAATCT-CTATTCTTTCAATGATTGG
4263072 ACACGATGTT
Statistics
Matches: 1640, Mismatches: 213, Indels: 40
0.87 0.11 0.02
Matches are distributed among these distances:
608 10 0.01
609 102 0.06
610 167 0.10
611 796 0.49
612 141 0.09
613 362 0.22
614 62 0.04
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (611 bp):
ATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTG
GGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAG
CAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATAATCTCCATTATTTGTGATTAG
GAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATG
TTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACAAAGATGGATTCTC
ATAATGATCTACAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTTTGATTATATAA
GAAAAGCTTTTCTTGTCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAACAAACATG
AATTCTTATAATAAGCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCTTTCTTGGGA
TACACGATATGAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCA
AAGTTTATACCTTAAATGAGGCAAAC
Found at i:4263394 original size:167 final size:166
Alignment explanation
Indices: 4263173--4263509 Score: 496
Period size: 167 Copynumber: 2.0 Consensus size: 166
4263163 CTTATAATAA
* *
4263173 TCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTTCTTATCGGGATACATGATATTAAT
1 TCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTCCTTATCAGGATACATGATATTAAT
* * *
4263238 GGTTTGATTTAACCAA-AAAAGATTTTTTCTCCACCATTTTTCCTTAAAATCAAAGTTTACGCCT
66 GGTTTGATTTAA-CAAGAAAAGATTTTTTCTCCACC-GTTTTCCTTAAAATCAAAGTATACACCT
4263302 TAAATGAGGCAAACATGGATTTACACAATAATCCCCAT
129 TAAATGAGGCAAACATGGATTTACACAATAATCCCCAT
* * * *
4263340 TCTTCATTTTTTTCACGATTAGGCAACCGAAACACATTCTCCTTATTAGGATACATGATATTAAT
1 TCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTCCTTATCAGGATACATGATATTAAT
* * * * *
4263405 GGTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTATATACCTTA
66 GGTTTGATTTAACAAGAAAAGATTTTTTCTCCACCGTTTTCCTTAAAATCAAAGTATACACCTTA
* * *
4263470 AATGAGTCAAACATGGATTTACACAATAATCTCTAT
131 AATGAGGCAAACATGGATTTACACAATAATCCCCAT
4263506 TCTT
1 TCTT
4263510 TCAATTATTA
Statistics
Matches: 152, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
166 64 0.42
167 88 0.58
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (166 bp):
TCTTCATTCTTTTCACAATTAGGCAACCAAAACACATTCTCCTTATCAGGATACATGATATTAAT
GGTTTGATTTAACAAGAAAAGATTTTTTCTCCACCGTTTTCCTTAAAATCAAAGTATACACCTTA
AATGAGGCAAACATGGATTTACACAATAATCCCCAT
Found at i:4265995 original size:610 final size:610
Alignment explanation
Indices: 4263341--4269911 Score: 8270
Period size: 611 Copynumber: 10.8 Consensus size: 610
4263331 AATCCCCATT
* * * * * * * * *
4263341 CTTCATTTTTTTCACGATTAGGCAACCGAAACACATTCTCCTTATTAGGATACATGATATTAATG
1 CTTCATTCTTTCCATGATTAGGCAA-CAAAACGCATTCTCTTTCTTGGGATACATGATATGAATG
* * * *
4263406 GTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTATATACCTTAA
65 CTTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAA
* * * * *
4263471 ATGAG-TCAAACATGGATTTACACAATAATCTCTATTCTTTCAATTATTAGGCACCATAAACACA
130 ATGAGAT-AAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACG
* *** * * *
4263535 TTATCTTTAAAAGGATGCACAATATTGACGCATTGGTTATGTAAGAAAAGTTTTTCTTGCCACTT
194 TTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTT
* * * * * * * * *
4263600 CTTTCCTTAAAGCCAAGTTCACTTT-TCAAATAATATAAAATTGGATTCTTATAATAATC-ACAT
259 ATTTCCTTAAAGCAAAGTTCA-TTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCA-
* * * * *
4263663 TTTTTTGTGATTAGG-CGCCAAAACGTGCTCTCTTCATTGGGATTCATCATATTGATGCTTTGAT
322 TTATTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGAT
* ** *
4263727 TTTTGCAAGAAATGCTTTTCGATCCACT-CTCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGGGA
387 TTTAGCAAGAAATGCTTTTCTTTCCACTAC-CTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGA
* * * * * *
4263791 CAGAGATGGATTCTCATAATGATCTACAAAAACACAATCTCTTCA--AGGATATATGATATTGAT
451 CAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGAT
* * * * *
4263854 GCTTTGATTATATAAGAAAAACTTTTTTTGCCACGATTTCTCCTTATAATTTGAGTTCTTATGTC
516 GTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTT-TCTTTATAATTTGAGTTCATATGTC
* *
4263919 AAATGAAACAAACATGGATTCTTATAATAAT
580 AAATGAAACAAACATGAATTCTTATAATAAG
* * * * * * *
4263950 CTTTATTGTTTTCATGATTAGGCACTCGAAAC-CTATTCTCCTTT-TTGGGATACACGATATTAA
1 CTTCATTCTTTCCATGATTAGGCA-ACAAAACGC-ATTCT-CTTTCTTGGGATACATGATATGAA
* ** * * * *
4264013 TGCTTTGGTTTTGTAAGAAAAGCTTTTTTCACCACCGTTTTCCTTAGAATCAATGTCTATAACTT
63 TGCTTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTT
* * * * * * **
4264078 AAATGAGACAATCATGGATTTACGCAATAATCTCCATTCGTTCAATGATTGTGTGCCATAAACGG
128 AAATGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACAC
* * * * * * *
4264143 GTTCTCTTCATTAGGATGCACAATACTGACGCATGGGTTATGCAAGAAAAG-TTTTCTTTCCATT
193 GTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACT
*
4264207 TATTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGATTCATGTAATAATCTCCAT
258 TATTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCAT
* * * * * *
4264272 TTTTTGTGATTAGTAAGCCAAAACATGCTCTTTTCATTAGGATGCAAGATATTGATGCTTTGACT
323 TATTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATT
* * * * * * * *
4264337 ATCGCAAGAAATGTTTTTCTTTCCACTACGTTTTTAAATTCAATGTTTGCCCCGTAAAAAAGACA
388 TTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACA
* * * * * * *
4264402 ATGATGGATTCTCATATTGATTTACAAAAACACATTCTATCCATTAGTATACATGG-CATTGATG
453 AAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACA-GGATATTGATG
* * * * *
4264466 TTTTGATTA-ATAAGAAAAGCTTTTCTTGTCACAATTTT-TCTTACAATTAGAGTTCATTTGTCA
517 TTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCT-TTATAATTTGAGTTCATATGTCA
* *
4264529 AATGAAACAAACATGGATTCTTATAATAAT
581 AATGAAACAAACATGAATTCTTATAATAAG
* * * ** *
4264559 CTTTATTCTTTTCAGGATTAGGCAACCAAAACAAATTCTCCTTT-TTGGGATACACT-ATATTAA
1 CTTCATTCTTTCCATGATTAGGCAA-CAAAACGCATTCT-CTTTCTTGGGATACA-TGATATGAA
* * * * * * * *
4264622 TGCTTTGGTTTCATAAGAATAGCTTTTATCTCCACCATTTTTCTTAGAATTAAAGTTTATACCTT
63 TGCTTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTT
* * * * * * * * *
4264687 ACATGAGACAAACGTGGAATTAAGTAATAATCTCTATTCTTTCAATGATTGGGCACCTTAAAAAC
128 AAATGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACAC
** * *
4264752 GTTATCTTCATTTAGATGCACAATATTGATGCATTGGTTATGCAAAAAAAAGCTTTCCTTGCCAC
193 GTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGC-AAGAAAAGCTTTTCTTGCCAC
** * *
4264817 TTATTTCCACAAAGGAAAGTTCATTTGTCAAATACTAGA-AAAAA--GAATTCTTGTAATAATCT
257 TTATTTCCTTAAAGCAAAGTTCATTTGTCAAATA--AGACAAAAATGGAA-TCATGTAATAATCT
* * * *
4264879 CCATTACTTTGTGATTAGGCAGCCAAAACACGCTCTCTCCATTGGGATGCATGATATTGATACTT
319 CCATTA-TTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTT
* * * *
4264944 TGATTTTCGCAAGAAATGGTTTTC-TTCCAACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAA
383 TGATTTTAGCAAGAAATGCTTTTCTTTCC-ACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAA
* * * *
4265008 GAGATAAAGATGAATTCTCATAATGATCTCCAAAAACACATTTTATTCATTAGGATACATGATAT
447 GAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATAT
* **
4265073 TGATGTTTTGATTGTATAAGAAAAGCTTTTCTTGCCACGATGCTCTTTATAATTTGTGAGTTCAT
512 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAA-TT-TGAGTTCAT
*
4265138 ATGTGAAATGAAACAAACATGAATTCTTATAATAAG
575 ATGTCAAATGAAACAAACATGAATTCTTATAATAAG
* * * * *
4265174 CTTCATTCTTTCCATGATTAGGCAACAAAATGCATTCTTTTTCTTAGGATAGACGATATGAATGC
1 CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
* **
4265239 TTTGATTTCA-AATAAAAAG-TTTTTTCTCTACCGTTTTCCTCGGAATCAATGTTTATACCTTAA
66 TTTGATTTCATAA-GAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAA
* * * * *
4265302 CTGAGGTAAACATGGATTTACGCAATAATCTCTATTCCTACAAGGATTGGGTACCATAAACACGT
130 ATGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGT
* * * *
4265367 TATCTTCATTGTGATGCACAATAGTGATGCATTAGTTATGCAAGAAAAGTTTTTCTTGCCACTTA
195 TATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTA
* *
4265432 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGAGAAAAATGGAATCATGTAATAAGCTCCATTA
260 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCATTA
* * *
4265497 TTTGTGATTAGGAAGCCTAAACATGCTCTCTTCATTAGGATGCATGATATTGATGCTTTCATTTT
325 TTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTT
4265562 AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTAAAAGAGACAA
390 AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCC-TTAAAAGAGACAA
* *
4265627 AGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATATAGGATATTGGTGTT
454 AGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTT
*
4265692 TTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTTAAAT
519 TTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTCAAAT
* *
4265757 GAAACAAACATGGATTATTATAATAAG
584 GAAACAAACATGAATTCTTATAATAAG
* *
4265784 CTTCATTCTTTCCATGATT-TGCAACAAAACGCATTCTCTTTCTTGGGAAACATGATATGAATGC
1 CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
*
4265848 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTACACCTTAAA
66 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
* * * * * **
4265913 AGAGGTAAACATGGATTTACGCAATAATCTCTATTCCTACAAGGATTGGGTACTGTAAACACGTT
131 TGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGTT
** * *
4265978 ATCTTCATTGGGATGCACAATAGCGACT-CATTAGTTATGCAAGAAAAGGTTTTCTTGCCACTTA
196 ATCTTCATTGGGATGCACAATATTGA-TGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTA
* *
4266042 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATAAGCTCCATTA
260 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCATTA
* * * *
4266107 TTTGTGATTAAGAAGCCTAAACATGCTATCTTCATTGGGATGCATGATATTGATGCTTTCATTTT
325 TTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTT
*
4266172 AGCAAGAAATGCTTTTCTTTCCACTTCCTTTTTAAAATCAAAGTTTGCCCCTTTAAAAGAGACAA
390 AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCC-TTAAAAGAGACAA
* * *
4266237 AGTTGGATTCTCATAATGATCCCCAAAAACACATTCTATTCATTAGGATACAGGATATTGGTGTT
454 AGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTT
*
4266302 TTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTTAAAT
519 TTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTCAAAT
4266367 GAAACAAACATGAATTCTTATAATAAG
584 GAAACAAACATGAATTCTTATAATAAG
* ** *
4266394 -------C-TT-CATGATTAGGAAACCAAAACAAATTCTCCTT-TTGGGATACACT-ATA-GTAA
1 CTTCATTCTTTCCATGATTAGGCAA-CAAAACGCATTCTCTTTCTTGGGATACA-TGATATG-AA
* * * *
4266447 TGCTTTGGTTTCATAAGAATAGCTTTTATCTCCT-CCGTTTTTCTTAGAATCAATGTTTATACCT
63 TGCTTTGATTTCATAAGAAAAGCTTTTTTCT-CTACCGTTTTCCTTAGAATCAATGTTTATACCT
* * * * * * * *
4266511 TACATGAGACAAACGTGGAATTATGTAATAATCTCTATTCTTTCAATGATTGGGCACCTTTAAA-
127 TAAATGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACC-ATAAAC
** * *
4266575 ACGTTATCTTCATTTAGATGCACAATATTGATGCATTGGTTATGCAAAAAAAGCTTTCCTTGCCA
191 ACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA
* * * *
4266640 CTTATTTCCTCAAAGGAAAGTTCATTTGTCAAATACTAGA-AAAAA--AAATTCTTGTAATAATC
256 CTTATTTCCTTAAAGCAAAGTTCATTTGTCAAATA--AGACAAAAATGGAA-TCATGTAATAATC
* * * * *
4266702 TCCATTACTTTGTGATTAGGTAGCCAAGACACGCTCTCTCCATTGGGATGCATGATATTGATACT
318 TCCATTA-TTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCT
* * * * * * * * *
4266767 ATGATTTTTGCAAGAAATGGTTTTCCTTCAACTACCATTTTAAAATCATAGTTTGTCCCTTAAAG
382 TTGATTTTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAA
* * *
4266832 GAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTTTATTCATTAGGATACATGATAT
447 GAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATAT
* **
4266897 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTACCACGATGCTCTTTATAATTTGTGAGTTCAT
512 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAA-TT-TGAGTTCAT
* *
4266962 ATGTGAAATTAAACAAACATGAATTCTTATAATAAG
575 ATGTCAAATGAAACAAACATGAATTCTTATAATAAG
* * *
4266998 GTTCATTCTTTCCATCATTAGGCAACAAAACGCATTCTCTTTCTTGGGAAACATGATATGAATGC
1 CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
*
4267063 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTACACCTTAAA
66 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
* * * * * **
4267128 AGAGGTAAACATGGATTTACGCAATAATCTCTATTCCTACAAGGATTGGGTACTGTAAACACGTT
131 TGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGTT
** * *
4267193 ATCTTCATTGGGATGCACAATAGCGACT-CATTAGTTATGCAAGAAAAGGTTTTCTTGCCACTTA
196 ATCTTCATTGGGATGCACAATATTGA-TGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTA
* *
4267257 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAAAGGAATCATGTAATAAGCTCCATTA
260 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCATTA
* * *
4267322 TTTGTGATTAGGAAGCCTAAACATGCTATCTTCATTGGGATGCATGATATTGATGCTTTCATTTT
325 TTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTT
*
4267387 AGCAAGAAATGCTTTTCTTTCCACTTCCTTTTTAAAATCAAAGTTTGCCCCTTTAAAAGAGACAA
390 AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCC-TTAAAAGAGACAA
* * *
4267452 AGTTGGATTCTCATAATGATCCCCAAAAACACATTCTATTCATTAGGATACAGGATATTGGTGTT
454 AGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTT
*
4267517 TTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTTAAAT
519 TTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTCAAAT
* *
4267582 GAAACAAACATGGATTATTATAATAAG
584 GAAACAAACATGAATTCTTATAATAAG
* * *
4267609 CTTCATTCTTTCCATGATTTGGCAACAAAATGCATTCTCTTTCTTGGGAAACATGATATGAATGC
1 CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
4267674 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
66 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
* * * *
4267739 TGAGGTAAACATGGATTTACGCAATAATCTCTATTCCTACAAGGATTGGGTACCATAAACACGTT
131 TGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGTT
* * * * *
4267804 ATCTTCATTGGGATGCACAATAGTGACGCATTAGTTATGCAAGAAAAGTTTTTCTTGCCAGTTAT
196 ATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTAT
* *
4267869 TTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAAGCTCCACTAT
261 TTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCATTAT
* *
4267934 TTGTGATTAGGAAGCCTAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTCATTTTA
326 TTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTA
4267999 GCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTTAAAAGAGACAAA
391 GCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCC-TTAAAAGAGACAAA
* * * *
4268064 GTTGGATTCTCATAATGATCTCCAAAAACACATTCTATTTATTAGGATACAGGATCTTGGTGTTT
455 GATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTT
*
4268129 TGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTTAAATG
520 TGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTCAAATG
4268194 AAACAAACATGAATTCTTATAATAAG
585 AAACAAACATGAATTCTTATAATAAG
* * * * *
4268220 TTTCATTCTATCCATGATTTGGCAACAAAACGCATTCTCTTTCTTGGGAAATATGATATGAATGC
1 CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
* ** * * *
4268285 TTTGGTTTTGTAAGAAAAGCTTTTTTCTCCACCGTTTTCCTTAGAATCAATGTCTATAACTTAAA
66 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
** * * * * * **
4268350 TGAGACT-GTCATGGATTTATGCAATAATCTCCATTCATTCAATGATTGTGTGCCATAAACGGGT
131 TGAGA-TAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGT
* * * * *
4268414 TCTCTTCATTAGGATGCACAATATTGACGCATGGGTTATGCAAGAAAAG-TTTTCTTTCCACTTA
195 TATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTA
*
4268478 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAAATGGATTCATGTAATAATCTCCATT
260 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGAC-AAAAATGGAATCATGTAATAATCTCCATT
* * * * *
4268543 TTTTGTGATTAGGAAGCCAAAACATGCTCTTTTCGTTAGGATGCATGATATTGATGCTTTGACTA
324 ATTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGA-TT
* * * * * * *
4268608 TT-GCAAGAATTGTTTTTCTTTCCACTACGTTTTTAAATTCAAAGTTTGCCCCGTAAAAAAGACT
388 TTAGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACA
* * * * *
4268672 ATGATGGATTCTCATATTGATCTACAAAAACACATTCTATCCATTAGGATACATGG-CATTGATG
453 AAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACA-GGATATTGATG
* * * *
4268736 TTTTGATTA-ATAAGAAAAGCTTTTCTTGTCACAATTTT-TCTTATAATTAGAGTTCATTTGTCA
517 TTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCT-TTATAATTTGAGTTCATATGTCA
* *
4268799 AATGAAACAAACATGGATTCTTATAATAAT
581 AATGAAACAAACATGAATTCTTATAATAAG
* * ** * ** *
4268829 CTTTATTCCTTT-CATGATTGGGCAACCAAAACAAATTCTCCTT-TTGCAATACACT-ATATTAA
1 CTTCATT-CTTTCCATGATTAGGCAA-CAAAACGCATTCTCTTTCTTGGGATACA-TGATATGAA
* * * * * *
4268891 TGCTTTGGTTTCATAAGAATAGCTTTTATCTCCACCGTTTTTCTTAGAATCAAAGTTTATACCTT
63 TGCTTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTT
* ** * * * * *
4268956 ACATGAGATAAATGTGGAATTATGTAATAATCTCTATTCTTTCAATGATTGGGCACCTTTAAA-A
128 AAATGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACC-ATAAACA
** * *
4269020 CGTTATCTTCATTTAGATGCACAATATTGATGCATTGGTTATGCAAAAAAAGCTTTCCTTGCCAC
192 CGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCAC
* * * *
4269085 TTATTTCCTCAAAGGAAAGTTCATTTGTCAAATACTAGA-AAAAA--GAATTCTTGTAAGAATCT
257 TTATTTCCTTAAAGCAAAGTTCATTTGTCAAATA--AGACAAAAATGGAA-TCATGTAATAATCT
* * * * * *
4269147 CCATTACTTTGTGATTAGGCAGCCAAGACACGCTCTCTCCATTAGGATGCATGATATTGATACTT
319 CCATTA-TTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTT
* * * ** *
4269212 TGATTTTCA-CAAGAAATGGTTTTCCTTCAACTACAATTTTAAAATCAAAGTTTGTCCCTTAAAA
383 TGATTTT-AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAA
* * *
4269276 GAGACAAAGATGAATTCTCATAATGATCTCCAAGAACACATTCTATTCATTAGGATACATGATAT
447 GAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATAT
* * *
4269341 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACAATTCTCTTTATAATTTGTGAGTTAAT
512 TGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAA-TT-TGAGTTCAT
4269406 ATGTCAAATGAAACAAACATGAATTCTTATAATAAG
575 ATGTCAAATGAAACAAACATGAATTCTTATAATAAG
* * * * *
4269442 CTTCATTCTTTCCATGATTAGGCAACCAAATGCATTCTTTTTCTTAGGATACACGATATGAATGC
1 CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
* * *
4269507 TTTGATATCATAAGAAAAGCTTTTTTCTCTTCCGTTTTCCTTAGAATTAATGTTTATACCTTAAA
66 TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
* * * * *
4269572 TGAGACAAACATAGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCGTAAACACGTT
131 TGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGTT
* * * * *
4269637 ATCTTCTTTGGGATGCACAAGATTGATGCATTTAGTTGTGCAAGAAAAGCTTTTCTTGCGACTTA
196 ATCTTCATTGGGATGCACAATATTGATGCA-TTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTA
* * * * * * *
4269702 TTTCCTTAAAGCAAAGTTCATCTGTCAAAAAATACAAAAATAGATTCTTGTAAAAATCTCCATTT
260 TTTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCA-TT
* ** * *
4269767 ATTTGTGATTAGGTAGCCAAAACACACTCTCTTCATTGGGATGCATGATATTGTTGCTTTCATTT
324 ATTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTT
* * *
4269832 TCA-CAAGAAATGCTTTTCTTTCCATTACCATTTTAAAATCAAAGTTTATCCCC-TAAAAGAGAC
389 T-AGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTT-GCCCCTTAAAAGAGAC
4269895 AAAGATGGATTCTCATA
452 AAAGATGGATTCTCATA
4269912 GTGGGGCAAA
Statistics
Matches: 5218, Mismatches: 641, Indels: 201
0.86 0.11 0.03
Matches are distributed among these distances:
601 11 0.00
602 339 0.06
603 127 0.02
604 46 0.01
607 3 0.00
608 79 0.02
609 901 0.17
610 960 0.18
611 1203 0.23
612 515 0.10
613 721 0.14
614 243 0.05
615 70 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (610 bp):
CTTCATTCTTTCCATGATTAGGCAACAAAACGCATTCTCTTTCTTGGGATACATGATATGAATGC
TTTGATTTCATAAGAAAAGCTTTTTTCTCTACCGTTTTCCTTAGAATCAATGTTTATACCTTAAA
TGAGATAAACATGGATTTACGCAATAATCTCTATTCTTTCAATGATTGGGTACCATAAACACGTT
ATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTAT
TTCCTTAAAGCAAAGTTCATTTGTCAAATAAGACAAAAATGGAATCATGTAATAATCTCCATTAT
TTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTA
GCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGCCCCTTAAAAGAGACAAAG
ATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACAGGATATTGATGTTTT
GATTATATAAGAAAAGCTTTTCTTGCCACGATTTTCTTTATAATTTGAGTTCATATGTCAAATGA
AACAAACATGAATTCTTATAATAAG
Found at i:4270236 original size:340 final size:341
Alignment explanation
Indices: 4269577--4270251 Score: 878
Period size: 340 Copynumber: 2.0 Consensus size: 341
4269567 TTAAATGAGA
* *
4269577 CAAACATAGATTTACGCAATAATCTCCATTCTTTCAATGATTGGGCACCGTAAACACGTTATCTT
1 CAAACATAGATTTACGCAATAATCTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTT
* * * *
4269642 CTTTGGGATGCACAAGATTGATGCATTTAGTTGTGCAAGAAAAGCTTTTCTTGCGACTTATTTCC
66 CATTGGGATGCACAAGATTGAAGCATTTAGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCC
* * *
4269707 TTAAAGCAAAGTTCATCTGTCAAAAAATACAAAAATAGATTCTTGTAAAAATCTCCATTTATTTG
131 TTAAAGCAAAGTTCATCTGTCAAAAAAGACAAAAATAGAATCATGTAAAAATCTCCATTTATTTG
* * *
4269772 TGATTAGGTAGCCAAAACACACTCTCTTCATTGGGATGCATGATATTGTTGCTTTCATTTTCACA
196 TGATTAGGAAGCCAAAACACACTATCTTCATTGGCATGCATGATATTGTTGCTTTCATTTTCACA
* * *
4269837 AGAAATGCTTTTCTTTCCATTACCATTTTAAAATCAAAGTTTATCCCCTAAAAGAGACAAAGATG
261 AAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTAGCCCCTAAAAGAGACAAAGATG
*
4269902 GATTCTCATAGTGGGG
326 GATTCCCATAGTGGGG
* ** *
4269918 CAAACATGGATTTACGCAATAATCTATGTTCTTTCAATGATTGGGCACCATAAACATGTTATCTT
1 CAAACATAGATTTACGCAATAATCTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTT
* * * * * * * *
4269983 CATTGGGGTGCACAATATTGAAGCA-TTGGTTATGCAAGAAAAGTTTTTTTTTCCATTTATTTCT
66 CATTGGGATGCACAAGATTGAAGCATTTAGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCC
* * * *
4270047 TTCAAGCAAAGTTCATTCAT-T-AAATAAGACAAAAATGGAATCATGTAATAATCTCCATTT-TT
131 TTAAAGCAAAGTTCA-TC-TGTCAAAAAAGACAAAAATAGAATCATGTAAAAATCTCCATTTATT
* ** * *
4270109 TGTGATT-GAGAAGCCCAAACATGCTATCTTCTTTGGCATGCATGATATTGATT-CTTTGATTTT
194 TGTGATTAG-GAAGCCAAAACACACTATCTTCATTGGCATGCATGATATTG-TTGCTTTCATTTT
** *
4270172 CGTAAAAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTT-GCCCCTTAAAAAGAGACA
257 CACAAAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTAGCCCC-T-AAAAGAGACA
*
4270236 AGGATGGATTCCCATA
320 AAGATGGATTCCCATA
4270252 ATGATCTACA
Statistics
Matches: 287, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
338 5 0.02
339 94 0.33
340 104 0.36
341 83 0.29
342 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (341 bp):
CAAACATAGATTTACGCAATAATCTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTT
CATTGGGATGCACAAGATTGAAGCATTTAGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCC
TTAAAGCAAAGTTCATCTGTCAAAAAAGACAAAAATAGAATCATGTAAAAATCTCCATTTATTTG
TGATTAGGAAGCCAAAACACACTATCTTCATTGGCATGCATGATATTGTTGCTTTCATTTTCACA
AAAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTAGCCCCTAAAAGAGACAAAGATG
GATTCCCATAGTGGGG
Found at i:4270759 original size:22 final size:22
Alignment explanation
Indices: 4270731--4270777 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
4270721 TATTGTTCAT
*
4270731 ACTATTCATGTATCGATACATC
1 ACTATTCATGTATCAATACATC
*
4270753 ACTATTCATGTATCAATATATC
1 ACTATTCATGTATCAATACATC
4270775 ACT
1 ACT
4270778 GTCAATCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.38
Consensus pattern (22 bp):
ACTATTCATGTATCAATACATC
Found at i:4270830 original size:20 final size:20
Alignment explanation
Indices: 4270794--4270844 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
4270784 CACAGTTCAT
4270794 GTATCGATACA-TATGAATA
1 GTATCGATACATTATGAATA
*
4270813 GTATCGATACATTATGAATT
1 GTATCGATACATTATGAATA
*
4270833 GTATCAATACAT
1 GTATCGATACAT
4270845 AAGAGTGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (20 bp):
GTATCGATACATTATGAATA
Found at i:4271257 original size:36 final size:33
Alignment explanation
Indices: 4271211--4271299 Score: 108
Period size: 36 Copynumber: 2.6 Consensus size: 33
4271201 CTAAGTGATT
*
4271211 GAGAGATTCTATCTTAGCCTTTGAAAAATATAGG
1 GAGAGATTCTATCTTAGCCTTTG-AAAAGATAGG
**
4271245 GAGAGAGGTTCTATCTTAGCCCATGAAAAGATAGG
1 GAGAGA--TTCTATCTTAGCCTTTGAAAAGATAGG
*
4271280 GAG-GTTTCTATCTTAGCCTT
1 GAGAGATTCTATCTTAGCCTT
4271300 GACAGATAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
32 13 0.28
34 7 0.15
35 12 0.26
36 15 0.32
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (33 bp):
GAGAGATTCTATCTTAGCCTTTGAAAAGATAGG
Found at i:4272397 original size:3 final size:3
Alignment explanation
Indices: 4272389--4272418 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
4272379 AACCATTCAA
4272389 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
4272419 CAAGAGGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:4275803 original size:159 final size:156
Alignment explanation
Indices: 4275596--4276064 Score: 384
Period size: 159 Copynumber: 3.0 Consensus size: 156
4275586 CTCATAAGTC
* *
4275596 AAATGAAACAAACATGGATTCTTAT-AATAATCTTCATTTTTTTCATGATTAGGCATCCAAAACA
1 AAATGAAACAAACATGGATTCTTATGAATAATCTTTA-TTCTTTCATGATTAGGCA-CCAAAACA
*
4275660 CATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATATAAAAAAGTCTTTTTCCCAC
64 CATTATCCTTATTGGGATACACGATATTAATGCTTTGATTTCATA-AAAAAAGTCTTTTTCCCAC
4275725 CGTTTTCCTTAGAATCAAAGCTTGTACCCT
128 CGTTTTCCTTAGAAT-AAAGCTTGTACCCT
* * *
4275755 AAATGAGACAAACATGGA-TC-TATGCAATAATCTTTATTCTTTCAATGATTGGGCAGCATAAAC
1 AAATGAAACAAACATGGATTCTTATG-AATAATCTTTATTCTTTC-ATGATTAGGCACCA-AAAC
** * * * **** * * * *
4275818 ATGTTATCTTTATTGGGATGCACAATATTGGCACATTG-GTT-ATGCAAGAAAAG-CTTTCCTTG
63 ACATTATCCTTATTGGGATACACGATATTAATGCTTTGATTTCAT--AAAAAAAGTCTTT--TTC
* * * ** * **
4275880 CCA-TGATTTTCCTTATATTTTGAGTTTGTATGCT
124 CCACCG-TTTTCCTTAGA-ATAAAGCTTGTACCCT
* *
4275914 AAATGAAACAAACATAGATTCTTATTG--TAATCTCTATTCTTTTCATGATTAGGCAACCAAAAC
1 AAATGAAACAAACATGGATTCTTA-TGAATAATCTTTATTC-TTTCATGATTAGGC-ACCAAAAC
* * * * *
4275977 ACATTTTTCTTATTAGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGT-TTTTTCCTC-
63 ACATTATCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAAAAAAGTCTTTTTCC-CA
4276040 CGTCGTTTTCCTTAGAATAAAGCTT
127 C--CGTTTTCCTTAGAATAAAGCTT
4276065 ATAACTTAGC
Statistics
Matches: 234, Mismatches: 54, Indels: 45
0.70 0.16 0.14
Matches are distributed among these distances:
157 12 0.05
158 25 0.11
159 178 0.76
160 13 0.06
161 4 0.02
162 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (156 bp):
AAATGAAACAAACATGGATTCTTATGAATAATCTTTATTCTTTCATGATTAGGCACCAAAACACA
TTATCCTTATTGGGATACACGATATTAATGCTTTGATTTCATAAAAAAAGTCTTTTTCCCACCGT
TTTCCTTAGAATAAAGCTTGTACCCT
Found at i:4276283 original size:318 final size:315
Alignment explanation
Indices: 4275596--4276354 Score: 756
Period size: 318 Copynumber: 2.4 Consensus size: 315
4275586 CTCATAAGTC
* * *
4275596 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTTTTTTCATGATTAGGCATCCAAAACAC
1 AAATAAAACAAACATAGATTCTTATAATAATC-TCATTTTTTT-ATGATTAGGCAACCAAAACAC
* * * *
4275661 ATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATATAAAAAAGTCTTTTTCCCACC
64 ATTTTTCTTATTGGGATACATGATATTAATGCTTTGATTTCATA-AGAAAAGTCTTTTTCCCACC
* * *
4275726 GTTTTCCTTAGAATCAAAGCTTGTACCCTAAATGAGACAAACATGGATCTATGCAATAATCTTTA
128 GTTTTCCTTAGAATCAAAGCTTATAACCTAAATGAGACAAACATGGATCTACGCAATAATCTTTA
* *
4275791 TTCTTTCAATGATTGGGCAGCATAAACATGTTATCTTTATTGGGATGCACAATATTGGCACATTG
193 TTCTTTCAATGATTGGGCACCATAAACATGTTATCTTTATTGGGATGCACAATATTGACACATTG
* ***** ***
4275856 GTTATGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTTGTATGCT
258 GTTATGCAAGAAAAGCTTTCCTTGCCATGATATTCCTTATAAGCAAAGTACATATGCT
* ** *
4275914 AAATGAAACAAACATAGATTCTTATTGTAATCTCTATTCTTTTCATGATTAGGCAACCAAAACAC
1 AAATAAAACAAACATAGATTCTTATAATAATCTC-ATT-TTTTTATGATTAGGCAACCAAAACAC
*
4275979 ATTTTTCTTATTAGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGT-TTTTTCCTC-CG
64 ATTTTTCTTATTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTCTTTTTCC-CAC-
* ** * * * *
4276042 TCGTTTTCCTTAGAAT-AAAGCTTATAACTTAGCTGAGACAAGCGTGGTTTTACGCAATAAT-TA
127 -CGTTTTCCTTAGAATCAAAGCTTATAACCTAAATGAGACAAACATGGATCTACGCAATAATCT-
* ** *
4276105 TCCCTATTTTTTCAATGATTGGGCACCATATTCATTTTATCTTCTA-TGGGATGCACAATATTGA
190 T---TATTCTTTCAATGATTGGGCACCATAAACATGTTATCTT-TATTGGGATGCACAATATTGA
** * *
4276169 TGCATTGGTTATGCAAGAAAA-CTTTTTCTTGCCACCT-A-ATTCCTTA-AAGCAAAGTACATTT
251 CACATTGGTTATGCAAGAAAAGC-TTTCCTTGCCA--TGATATTCCTTATAAGCAAAGTACATAT
4276230 G-T
313 GCT
* * *
4276232 CAAA-AAATACTAAA-AT-GAATTCTCATAATAATCTACATTTTTTTGTGATTAGGCAGCCAAAA
1 -AAATAAA-AC-AAACATAG-ATTCTTATAATAATCT-CATTTTTTTATGATTAGGCAACCAAAA
* * * * * *
4276294 CACA-CTTTCTTCATTGGGATGCATCATATTGATGCTTTGATTTTCGTAAGAAATG-CTTTTT
61 CACATTTTTCTT-ATTGGGATACATGATATTAATGCTTTGA-TTTCATAAGAAAAGTCTTTTT
4276355 GATCCTATCT
Statistics
Matches: 367, Mismatches: 53, Indels: 41
0.80 0.11 0.09
Matches are distributed among these distances:
316 9 0.02
317 52 0.14
318 159 0.43
319 52 0.14
320 91 0.25
321 3 0.01
322 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (315 bp):
AAATAAAACAAACATAGATTCTTATAATAATCTCATTTTTTTATGATTAGGCAACCAAAACACAT
TTTTCTTATTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTCTTTTTCCCACCGTT
TTCCTTAGAATCAAAGCTTATAACCTAAATGAGACAAACATGGATCTACGCAATAATCTTTATTC
TTTCAATGATTGGGCACCATAAACATGTTATCTTTATTGGGATGCACAATATTGACACATTGGTT
ATGCAAGAAAAGCTTTCCTTGCCATGATATTCCTTATAAGCAAAGTACATATGCT
Found at i:4276730 original size:928 final size:913
Alignment explanation
Indices: 4274949--4276775 Score: 2433
Period size: 928 Copynumber: 2.0 Consensus size: 913
4274939 TTGATTATAT
*
4274949 AAGAAAAACTTTTCTTGCCACGAATTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
1 AAGAAAAACTTTCCTTGCCACGAATTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* * *
4275014 TGGATTCTTAAAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACCCATTCTCCTTATTGG
66 TAGATTCTTAAAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTAG
*
4275079 GATAGACGATATTAATGCTTTGATTTCACAAGAAAAGTTTTCTCTCTACCGTTTTCCTTAGAATC
131 GATACACGATATTAATGCTTTGATTTCACAAGAAAAGTTTTCTCTCTACCGTTTTCCTTAGAATC
* * * * *
4275144 AAAGTTTATACCTTAATTGAGACAAACATGGATTTACACAATAATCTTCGTTCTTTCGATGATTG
196 AAAGCTTATAACTTAACTGAGACAAACATGGATTTACACAATAATCTTCATTCTTTCAATGATTG
*
4275209 GGCACCATAAACATGTTATCGTCTATGGGATGCGCATTGGTTATGCATGAAAAGCTTTTCTTGCC
261 GGCACCATAAACATGTTATCGTCTATGGGATGCGCATTGGTTATGCAAGAAAAGCTTTTCTTGCC
* * * ** *
4275274 ACTTATTTCCATAAAGCAAAGTACATTTGTCAAATAATACAAAAATTGATTCTTGTAATAATCTC
326 ACCTAATTCCATAAAGCAAAGTACATTTGTCAAAAAATACAAAAATTGATTCTCATAATAATCTA
4275339 CATTTTTTATGATTAGGCAGCCAAAACACACTCTCATTATTAGGATGCATCATATTGATGCTTTG
391 CATTTTTTATGATTAGGCAGCCAAAACACACTCTCATTATTAGGATGCATCATATTGATGCTTTG
* *
4275404 ATTTTCGTAAAAAATGCTTTTCAATCCATTATCTTTTTAAAATCAGGTTTTTCCCCTAAAAGAGA
456 ATTTTCGTAAAAAATGCTTTTCAATCCA-TATCTTTTTAAAATCAAGTTTTGCCCCTAAAAGAGA
* * *
4275469 CAGATGAATTCTCATAATGATCTCCAAAAAGACATTCCGTTCATTGGGATACATGATATTGATGT
520 CAGATGAATTCTCATAACGATCTCCAAAAAGACATTCCATTCATTGAGATACATGATATTGATGT
* * *
4275534 TTTGATTATATAAGAAAAGCTTTTCTTGCCATGATTTTTCTTATAATTTGAGCTCATAAGTCAAA
585 TTTGATTATATAAGAAAAGCTGTTCTTGCCACGATTTTCCTTATAATTTGAGCTCATAAGTCAAA
* * *
4275599 TGAAACAAACATGGATTCTTATAATAATCTTCATTTTTTTCATGATTAGGCATCCAAAACACATT
650 TGAAACAAACATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATT
* *
4275664 CTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATATAAAAAAGTCTTTTTCCCACCGTT
715 CTCCTTATTGGGATACACGATATTAATGCTTTGATTTCATATAAAAAAGTCTTTTGCCCACCATT
* * * * * *
4275729 TTCCTTAGAATCAAAGCTTGTACCCTAAATGAGACAAACATGGATCTATGCAATAATCTTTATTC
780 TTCCTTAGAATCAAAGCTTATACCATAAAAGAGAAAAACATGGATCTACGCAATAATCTCTATTC
* * * *
4275794 TTTCAATGATTGGGCAGCATAAACATGTTATCTT-TATTGGGATGCACAATATTGGCACATTGGT
845 TTTCAATGATTAGGCACCATAAACACGTTATCTTCT-TTGAGATGCACAATATTGGCACATTGGT
4275858 TATGC
909 TATGC
* * * * *
4275863 AAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTTGTATG-CTAAATGAAACAAAC
1 AAGAAAAACTTTCCTTGCCACGAATTTCCTTATAATTTGAGTTCGTATGTC-AAATGAAACAAAC
*** * *
4275927 ATAGATTCTTATTGTAATC-TCTATTCTTTTCATGATTAGGCAACCAAAACACATTTTTCTTATT
65 ATAGATTCTTAAAATAATCTTC-ATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATT
* * * *
4275991 AGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTC-CTCCGTCGTTTTCCTTAG
129 AGGATACACGATATTAATGCTTTGATTTCACAAGAAAAGTTTTCTCTCTAC--CGTTTTCCTTAG
* * * * * *
4276055 AAT-AAAGCTTATAACTTAGCTGAGACAAGCGTGGTTTTACGCAATAAT-TATCCCTATTTTTTC
192 AATCAAAGCTTATAACTTAACTGAGACAAACATGGATTTACACAATAATCT-T--C-ATTCTTTC
** * *
4276118 AATGATTGGGCACCATATTCATTTTATCTTCTATGGGATGCACAATATTGATGCATTGGTTATGC
253 AATGATTGGGCACCATAAACATGTTATCGTCTATGGGATG--C---------GCATTGGTTATGC
* *
4276183 AAGAAAA-CTTTTTCTTGCCACCTAATTCCTTAAAGCAAAGTACATTTGTCAAAAAATACTAAAA
307 AAGAAAAGC-TTTTCTTGCCACCTAATTCCATAAAGCAAAGTACATTTGTCAAAAAATACAAAAA
* * *
4276247 -TGAATTCTCATAATAATCTACATTTTTTTGTGATTAGGCAGCCAAAACACACTTTC-TTCATTG
371 TTG-ATTCTCATAATAATCTACA-TTTTTTATGATTAGGCAGCCAAAACACACTCTCATT-ATTA
* **
4276310 GGATGCATCATATTGATGCTTTGATTTTCGTAAGAAATGCTTTTTGATCC-TATCTTTTTAAAAT
433 GGATGCATCATATTGATGCTTTGATTTTCGTAAAAAATGCTTTTCAATCCATATCTTTTTAAAAT
* *
4276374 CAAAG-TTTGCCCTTAAAAGAGACAAAGATGAATTCTCATAACGATCTCCAAAAAGACATTCTAT
498 C-AAGTTTTGCCCCTAAAAGAGAC--AGATGAATTCTCATAACGATCTCCAAAAAGACATTCCAT
4276438 TCATTGAGATACATGAT-TTGATGTTTTGATTATATAAGAAAAGCTGTTCTTGCCACGATTTTCC
560 TCATTGAGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTGTTCTTGCCACGATTTTCC
* * * * * *
4276502 TTATATTTTGAGTTCGTATG-CTACATGAAACAAACATAGATTCTTATAATAATTTTCATTCTTT
625 TTATAATTTGAGCTCATAAGTC-AAATGAAACAAACATAGATTCTTATAATAATCTTCATTCTTT
* * * * *
4276566 TCATGATTATGCAACCATAACACATTCTGCTTTTTGGGATAGACGATATTAATGCTTTGATTTCA
689 TCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACACGATATTAATGCTTTGATTTCA
* * * *
4276631 TA-AGAAAAGT-TTTTGCCTACACCATTTTTCTTGGAATCAAAGTTTATACCATAAAAGAGAAAA
754 TATAAAAAAGTCTTTTGCC--CACCATTTTCCTTAGAATCAAAGCTTATACCATAAAAGAGAAAA
* * * *
4276694 ACATGGATTTACGCAATAATGTCTGTTCTTTCAATGATTAGGCTCCATAAACACGTTATCTTCTT
817 ACATGGATCTACGCAATAATCTCTATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCTT
4276759 TGAGATGCACAATATTG
882 TGAGATGCACAATATTG
4276776 ATGCATTGGT
Statistics
Matches: 790, Mismatches: 93, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
913 7 0.01
914 189 0.24
915 15 0.02
916 1 0.00
917 41 0.05
919 1 0.00
926 6 0.01
927 42 0.05
928 354 0.45
929 134 0.17
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (913 bp):
AAGAAAAACTTTCCTTGCCACGAATTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
TAGATTCTTAAAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTAG
GATACACGATATTAATGCTTTGATTTCACAAGAAAAGTTTTCTCTCTACCGTTTTCCTTAGAATC
AAAGCTTATAACTTAACTGAGACAAACATGGATTTACACAATAATCTTCATTCTTTCAATGATTG
GGCACCATAAACATGTTATCGTCTATGGGATGCGCATTGGTTATGCAAGAAAAGCTTTTCTTGCC
ACCTAATTCCATAAAGCAAAGTACATTTGTCAAAAAATACAAAAATTGATTCTCATAATAATCTA
CATTTTTTATGATTAGGCAGCCAAAACACACTCTCATTATTAGGATGCATCATATTGATGCTTTG
ATTTTCGTAAAAAATGCTTTTCAATCCATATCTTTTTAAAATCAAGTTTTGCCCCTAAAAGAGAC
AGATGAATTCTCATAACGATCTCCAAAAAGACATTCCATTCATTGAGATACATGATATTGATGTT
TTGATTATATAAGAAAAGCTGTTCTTGCCACGATTTTCCTTATAATTTGAGCTCATAAGTCAAAT
GAAACAAACATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTC
TCCTTATTGGGATACACGATATTAATGCTTTGATTTCATATAAAAAAGTCTTTTGCCCACCATTT
TCCTTAGAATCAAAGCTTATACCATAAAAGAGAAAAACATGGATCTACGCAATAATCTCTATTCT
TTCAATGATTAGGCACCATAAACACGTTATCTTCTTTGAGATGCACAATATTGGCACATTGGTTA
TGC
Found at i:4277698 original size:611 final size:606
Alignment explanation
Indices: 4275863--4277851 Score: 2451
Period size: 611 Copynumber: 3.3 Consensus size: 606
4275853 TTGGTTATGC
* * * *
4275863 AAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTTGTATGCTAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGCTAAATGAAACAAACA
** * * * *
4275928 TAGATTCTTATTGTAATC-TCTATTCTTTTCATGATTAGGCAACCAAAACACATTTTTCTTATTA
66 TAGATTCTTATAATAATCTTC-ATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTG
* ** *
4275992 GGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCGTCGTTTTCCTTAGAA
130 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCACCATTTTCCTTAGAA
* * ** * * * ** * * *
4276057 T-AAAGCTTATAACTTAGCTGAGACAAGCGTGGTTTTACGCAATAATTATCCCTATTTTTTCAAT
195 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACATAATAACT-T--CTGTTCTTTCAAT
** *
4276121 GATTGGGCACCATATTCATTTTATCTTCTATGGGATGCACAATATTGATGCATTGGTTATGCAAG
257 GATTGGGCACCATAAACATGTTATCTTCT-TGGGATGCACAATATTGATGCATTGGTTATGCAAG
* * * * * *
4276186 AAAACTTTTTCTTGCCACCTAATTCCTTAAAGCAAAGTACATTT-GTCAAAAAATACTAAAATGA
321 AAAAGTTTTTCTTGCCA-CTAATTCCTTAAAGCAAAGTTC-TTTCGTCAAATAAGACAAAAAAGA
*
4276250 ATTC-TCATAATAATCTACATTTTTTTGTGATTAGGCAGCCAAAACACACTT-TCTTCATTGGGA
384 ATTCTTC-TAATAATCTCCA-TTTTTTGTGATTAGGCAGCC-AAACACACTTCTCTTCATTGGGA
* * ** *
4276313 TGCATCATATTGATGCTTTGATTTTCGTAAGAAATGCTTTTTGAT-C-CTATCTTTTTAAAATCA
446 TGCATGATATTGATGCTTTGATTTTCGCAAGAAAT--TTTTTCTTCCACTACCTTTTTAAAATCA
* * *
4276376 AAGTTTGCCCTTAAAAGAGACAAAGATGAATTCTCATAACGATCTCCAAAAAGACATTCTATTCA
509 AAGTTTGTCCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCA
*
4276441 TTGAGATACATGAT-TTGATGTTTTGATTATAT
574 TTGGGATACATGATATTGATGTTTTGATTATAT
* * *
4276473 AAGAAAAGCTGTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGCTACATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGCTAAATGAAACAAACA
* * * *
4276538 TAGATTCTTATAATAATTTTCATTCTTTTCATGATTATGCAACCATAACACATTCTGCTTTTTGG
66 TAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTGG
* * * * *
4276603 GATAGACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTGCCTACACCATTTTTCTTGGAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCACCATTTTCCTTAGAAT
* * * **
4276668 CAAAGTTTATACCATAAAAGAGAAAAACATGGATTTACGCAATAA-TGTCTGTTCTTTCAATGAT
196 CAAAGTTTATACCTTAAATGAGACAAACATGGATTTACATAATAACT-TCTGTTCTTTCAATGAT
* * * * *
4276732 TAGGCTCCATAAACACGTTATCTTCTTTGAGATGCACAATATTGATGCATTGGTTA--C-A-TAA
260 TGGGCACCATAAACATGTTATCTTC-TTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAA
* * * * * * *
4276793 GGATTTTCTTGCCACTTATTTCCTTAAAGCAAAATT-TATTCGTCATATAAGACAAAACTA-TAT
324 AGTTTTTCTTGCCAC-TAATTCCTTAAAGCAAAGTTCT-TTCGTCAAATAAGACAAAA-AAGAAT
* * * *
4276856 TCTTGTAATAATCTCCATTTTTTGTAATTAGGCAGCCCAAACA-AGC-TCTCTCCCTTGGGATGC
386 TCTTCTAATAATCTCCATTTTTTGTGATTAGGCAG-CCAAACACA-CTTCTCTTCATTGGGATGC
*
4276919 ATGATATTGATGCTTTGATTTTCGCAAGAAATTCTTTTCTTTCCACTACCTTTATAAAATCAAAG
449 ATGATATTGATGCTTTGATTTTCGCAAGAAATT-TTTTC-TTCCACTACCTTTTTAAAATCAAAG
* * * *
4276984 TTTATCCCTTAAAAGAGGCAAAAATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCCTT
512 TTTGT-CCTTAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCATT
*
4277049 GGGATACATGATATTGATATTTTGATTATAT
576 GGGATACATGATATTGATGTTTTGATTATAT
* *
4277080 AAGAAAAGCTTTTTTTGCCACGATTTTCCTTATAATTTGAGTTCGT-TAG-TCAAATGAATCAAA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTAT-GCT-AAATGAAACAAA
* * * ** *
4277143 CTTGGATTCTTATAATAATCTTCATTCTTTACATGATTAGTTAACCTAAACACATTCTCCTTTTT
64 CATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTT
* ** *
4277208 GGGATACATGATATTAACACTTTAATTTCATAAGAAAAGTATTTTTCC-CCACCATTTTCCTTAG
129 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGT-TTTTTCCTCCACCATTTTCCTTAG
*
4277272 AATCAAAGTTTATACCTTAAATGAGGCAAACATGGATTTACATAATAAGCTTC-GTTCTTTCAAT
193 AATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACATAATAA-CTTCTGTTCTTTCAAT
*
4277336 GATTGGGCACCGTAAACATGTTATCTTCATTGGGATGCACAATATTGACT-CATTGGTTATGCAA
257 GATTGGGCACCATAAACATGTTATCTTC-TTGGGATGCACAATATTGA-TGCATTGGTTATGCAA
** * *
4277400 GAAAAGTTTTTCTTGCCACTCCTTGCCTTAAAGCAAAGTTCTTTCATCAAATAAGACAAAAAAGG
320 GAAAAGTTTTTCTTGCCACTAATT-CCTTAAAGCAAAGTTCTTTCGTCAAATAAGACAAAAAAGA
* * *
4277465 ATTCTTCTAATAATCTCCATTATTTTATGATTAGGTAGCCAAACACA-TTCCCTTCATTGGGATG
384 ATTCTTCTAATAATCTCCATT-TTTTGTGATTAGGCAGCCAAACACACTTCTCTTCATTGGGATG
* *
4277529 CATGATATGGTTGCTTTGATTTTCGCAAGAAATATTTTTCTTCCCACTACCTTTTTAAAATCAAA
448 CATGATATTGATGCTTTGATTTTCGCAAGAAAT-TTTTTCTT-CCACTACCTTTTTAAAATCAAA
4277594 GTTTGTCCTATAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCAT
511 GTTTGTCCT-TAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCAT
4277659 TGGGATACATGATATTGATGTTTTGATTATAT
575 TGGGATACATGATATTGATGTTTTGATTATAT
* * *
4277691 TAGAAAAGCTTTTCTTGCCACGATTTTCCTTGTAATTTGAGTTCGTGTG-TCAAATGAAACAAAC
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGCT-AAATGAAACAAAC
* * * * * *
4277755 ATGGATTCTTACAATAATCTTCATTTTTTTCAGGATTAGGCAACCAAAACACATTGTCCTTCTTG
65 ATAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTG
*
4277820 GGATACACGATATTAATGCTTTGATTTAATAA
130 GGATACACGATATTAATGCTTTGATTTCATAA
4277852 AAACACATTC
Statistics
Matches: 1185, Mismatches: 157, Indels: 73
0.84 0.11 0.05
Matches are distributed among these distances:
601 1 0.00
602 7 0.01
603 70 0.06
604 60 0.05
605 23 0.02
606 68 0.06
607 278 0.23
608 70 0.06
609 3 0.00
610 181 0.15
611 407 0.34
612 17 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (606 bp):
AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGCTAAATGAAACAAACA
TAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTGG
GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCACCATTTTCCTTAGAAT
CAAAGTTTATACCTTAAATGAGACAAACATGGATTTACATAATAACTTCTGTTCTTTCAATGATT
GGGCACCATAAACATGTTATCTTCTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAG
TTTTTCTTGCCACTAATTCCTTAAAGCAAAGTTCTTTCGTCAAATAAGACAAAAAAGAATTCTTC
TAATAATCTCCATTTTTTGTGATTAGGCAGCCAAACACACTTCTCTTCATTGGGATGCATGATAT
TGATGCTTTGATTTTCGCAAGAAATTTTTTCTTCCACTACCTTTTTAAAATCAAAGTTTGTCCTT
AAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGATACATG
ATATTGATGTTTTGATTATAT
Found at i:4277860 original size:51 final size:51
Alignment explanation
Indices: 4277800--4277896 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
4277790 TTAGGCAACC
* *
4277800 AAAACACATTGTCCTTC-TTGGGATACACGATATTAATGCTTTGATTTAATA
1 AAAACACATTCT-ATTCATTGGGATACACGATATTAATGCTTTGATTTAATA
* * *
4277851 AAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATT
1 AAAACACATTCTATTCATTGGGATACACGATATTAATGCTTTGATT
4277897 ATATAAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 3 0.08
51 37 0.93
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.39
Consensus pattern (51 bp):
AAAACACATTCTATTCATTGGGATACACGATATTAATGCTTTGATTTAATA
Found at i:4278005 original size:210 final size:210
Alignment explanation
Indices: 4277640--4278061 Score: 738
Period size: 210 Copynumber: 2.0 Consensus size: 210
4277630 AATGATCTCC
*
4277640 AAAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATTAGAAAAGCTTTTC
1 AAAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTC
* * *
4277705 TTGCCACGATTTTCCTTGTAATTTGAGTTCGTGTGTCAAATGAAACAAACATGGATTCTTACAAT
66 TTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATAGATTCTTACAAT
* * *
4277770 AATCTTCATTTTTTTCAGGATTAGGCAACCAAAACACATTGTCCTTC-TTGGGATACACGATATT
131 AATCTTCATTCTTTTCAGAATTAGGCAACCAAAACACATTCTCC-TCATTGGGATACACGATATT
4277834 AATGCTTTGATTTAAT
195 AATGCTTTGATTTAAT
4277850 AAAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTC
1 AAAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTC
* *
4277915 TTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAGCAAACCTAGATTCTTACAAT
66 TTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATAGATTCTTACAAT
*
4277980 AATCTTCATTCTTTTCATAATTAGGCAACCAAAACACATTCTCCTCATTGGGATACACGATATTA
131 AATCTTCATTCTTTTCAGAATTAGGCAACCAAAACACATTCTCCTCATTGGGATACACGATATTA
4278045 ATGCTTTGATTTAAT
196 ATGCTTTGATTTAAT
4278060 AA
1 AA
4278062 TAAAAGTTTT
Statistics
Matches: 201, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
209 2 0.01
210 199 0.99
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (210 bp):
AAAAACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTC
TTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATAGATTCTTACAAT
AATCTTCATTCTTTTCAGAATTAGGCAACCAAAACACATTCTCCTCATTGGGATACACGATATTA
ATGCTTTGATTTAAT
Found at i:4278459 original size:318 final size:319
Alignment explanation
Indices: 4277864--4279161 Score: 1280
Period size: 318 Copynumber: 4.2 Consensus size: 319
4277854 ACACATTCTA
* ** ** * **
4277864 TTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACGATTTTC
1 TTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTC
* *
4277929 CTTATAATTTGAGTTCGTATGTCAAATG-AAGCAAACCTAGATTCTTACAATAATCTTCATTCTT
66 CTTATAATTTGAGTTCGTATGTCAAATGTAA-CAAACATAGATTCTTATAATAATCTTCATTCTT
* * *
4277993 TTCATAATTAGGCAACCAAAACACATTCTCCTCATTGGGATACACGATATTAATGCTTTGATTT-
130 TTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACATGATATTAATGCTTTGATTTA
* * *
4278057 AATAATAAAAGTTTTTTTCTCTACCGTTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAA
195 AATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAA
* ** * * *
4278122 ACATGGATTTACACAATAATCTCCATTCTTTCAATAATTGGGCACCGTAAGCACGTTATC
260 ACAAGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATC
*
4278182 TTCATTGGGATGCACAATATTGATGCATTGGCTATGCAAGAAAAGCTTTTCTTGCCACGATTTTC
1 TTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTC
* * *
4278247 CTTATATTTTGAGTTCGTATATTAAATGTAACAAACATAGATTCTTATAATAATCTTCATTCTTT
66 CTTATAATTTGAGTTCGTATGTCAAATGTAACAAACATAGATTCTTATAATAATCTTCATTCTTT
* *
4278312 TCATGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACATAATATTAATGCTTTGA-TTAA
131 TCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACATGATATTAATGCTTTGATTTAA
* * * * *
4278376 ATAAAAAAAGTTTTTTTCTCCACCATTTCCCTTAGAATCAAAGTTTATACCTTAATTGAGACAAG
196 ATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAA
*
4278441 CAAGGATTTGTGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACA-GTTATC
261 CAAGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATC
* * * * * *
4278499 TTCTTTGGGATGCATAATATTGATTCATTGGTTATGCAAAAAAAGTTTTTCTTGCCAC-TTATTT
1 TTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGAT-TTT
* **** * * * * * *
4278563 CCATA-AAGCAAAGTTCGT-TCGTCAAA-ATAGAGAAAAATACATTCTTGTAATAATCTCCATT-
65 CCTTATAATTTGAGTTCGTAT-GTCAAATGTA-ACAAACATAGATTCTTATAATAATCTTCATTC
** * ** * ** * * *
4278624 TTTTTGTGATTAGGCAGCCAAAACACGCTCT-CTTCCTTGCAATGCTTGATATTGATGCTTTGAT
128 TTTTCATGATTAGGCAACCAAAACACATTCTCCTT-ATTGGGATACATGATATTAATGCTTTGAT
** * * * * *
4278688 TTTCACAAGAAATGCTTTTCTTTC-CACTACCA--TT--TTAAAATCAAAGTTTGTCCCTTAA--
192 TTAAATAAGAAAAG-TTTT-TTTCTC-C-ACCATTTTCCTTAGAATCAAAGTTTATACCTTAACT
* * * *
4278746 AAG--AGA-TA--A-TGATG-GAT--TCT-CA-----T-AATGATCT--GCA--A-AAACACG-T
253 AAGACAAACAAGGATTTATGCAATAATCTCCATTCTTTCAATGAT-TGGGCACCATAAACACGTT
*
4278789 CTC
317 ATC
* * ** ** ** ** * *
4278792 TT-ATTAGGATTCATGATATTGATGTTTTCATTATATAAGAAAAGCTTTTCTTGCCATGATTTTT
1 TTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTC
* *
4278856 CTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTT
66 CTTATAATTTGAGTTCGTATGTCAAATGTAACAAACATAGATTCTTATAATAATCTTCATTCTTT
* * * *
4278921 TCATGATTAAGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAAT-CTGTAATTTAA
131 TCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACATGATATTAATGCTTTGATTTAA
* ** *
4278985 A-AAGAAAAG-TTTTTTCTTCGTCATTTTCCTTAGAATCAAAGTTTATACCTTAACTGAGACAAA
196 ATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAA
*
4279048 CATA-AATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATC
261 CA-AGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATC
* * * *
4279107 TTCTTTGGGATGCGCAATATTGATGCATTGGTTATGTAAGAAAAGTTTTTCTTGC
1 TTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGC
4279162 TACTTATTTC
Statistics
Matches: 776, Mismatches: 155, Indels: 100
0.75 0.15 0.10
Matches are distributed among these distances:
288 2 0.00
289 5 0.01
290 5 0.01
292 75 0.10
293 59 0.08
294 45 0.06
295 3 0.00
296 5 0.01
297 6 0.01
298 3 0.00
299 1 0.00
300 4 0.01
301 2 0.00
303 5 0.01
304 5 0.01
306 2 0.00
307 3 0.00
308 1 0.00
309 2 0.00
310 7 0.01
311 4 0.01
313 3 0.00
314 10 0.01
315 75 0.10
316 88 0.11
317 73 0.09
318 277 0.36
319 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (319 bp):
TTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTC
CTTATAATTTGAGTTCGTATGTCAAATGTAACAAACATAGATTCTTATAATAATCTTCATTCTTT
TCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACATGATATTAATGCTTTGATTTAA
ATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTAAGACAAA
CAAGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATC
Found at i:4278541 original size:159 final size:158
Alignment explanation
Indices: 4277968--4278548 Score: 459
Period size: 159 Copynumber: 3.7 Consensus size: 158
4277958 AGCAAACCTA
* * * * * *
4277968 GATTCTTACAATAATCTTCATTCTTTTC-ATAATTAGGCAACCA-AAACACATTCTCCTCATTGG
1 GATT-TTACAATAATCTCCATTC-TTTCAATGATTGGGC-ACCATAAACACGTTATCTTCATTGG
* ** * * * * * *
4278031 GATACACGATATTAATGCTTTGATTTAAT--AATAAAAGTTTTTTTCTCTACCGTTTTCCTTAGA
63 GATGCATAATATTGATGCATTG-GTT-ATGCAAAAAAAGTTTTTTTCTCCACCATTTTCCTTAGA
* * *
4278094 ATCAAAGTTTATACCTTAACTAAGACAAACATG
126 ATCAAAGTTTATACCTTAAATGAGACAAACAAG
* * * *
4278127 GATTTACACAATAATCTCCATTCTTTCAATAATTGGGCACCGTAAGCACGTTATCTTCATTGGGA
1 GATTT-TACAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * * * * *
4278192 TGCACAATATTGATGCATTGGCTATGCAAGAAAAGCTTTTCTT-GCCACGATTTTCCTTATATTT
65 TGCATAATATTGATGCATTGGTTATGCAAAAAAAG-TTTTTTTCTCCACCATTTTCCTTAGAATC
**
4278256 TGAGTTCGTATA--TTAAATGTA-ACAAACATA-
129 AAAGTT--TATACCTTAAATG-AGACAAACA-AG
* * * * * *
4278286 GATTCTTATAATAATCTTCATTCTTTTC-ATGATTAGGCAACCA-AAACACATTCTCCTT-ATTA
1 GATT-TTACAATAATCTCCATTC-TTTCAATGATTGGGC-ACCATAAACACGTTAT-CTTCATTG
* * * * *** *
4278348 GGATACATAATATTAATGCTTTGATTAAATAAAAAAAGTTTTTTTCTCCACCATTTCCCTTAGAA
62 GGATGCATAATATTGATGCATTGGTTATGCAAAAAAAGTTTTTTTCTCCACCATTTTCCTTAGAA
* *
4278413 TCAAAGTTTATACCTTAATTGAGACAAGCAAG
127 TCAAAGTTTATACCTTAAATGAGACAAACAAG
* *
4278445 GATTTGTGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACA-GTTATCTTCTTTGGGA
1 GATTT-TACAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
*
4278509 TGCATAATATTGATTCATTGGTTATGCAAAAAAAGTTTTT
65 TGCATAATATTGATGCATTGGTTATGCAAAAAAAGTTTTT
4278549 CTTGCCACTT
Statistics
Matches: 324, Mismatches: 75, Indels: 47
0.73 0.17 0.11
Matches are distributed among these distances:
157 9 0.03
158 66 0.20
159 227 0.70
160 18 0.06
161 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (158 bp):
GATTTTACAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGAT
GCATAATATTGATGCATTGGTTATGCAAAAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAA
AGTTTATACCTTAAATGAGACAAACAAG
Found at i:4279464 original size:608 final size:609
Alignment explanation
Indices: 4278219--4280573 Score: 3008
Period size: 608 Copynumber: 3.9 Consensus size: 609
4278209 TTGGCTATGC
* * * * * *
4278219 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATATTAAATGTAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAACAAACA
* *
4278284 TAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTAG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* ** *
4278349 GATACATAATATTAATGCTTTGA-TTAAATAAAAAAAGTTTTTTTCTCCACCATTTCCCTTAGAA
131 GATACATAATATTAATGCTTTGATTTAAA-AAGAAAAG-TTTTTTCTCCGTCATTTTCCTTAGAA
* * *
4278413 TCAAAGTTTATACCTTAATTGAGACAAGCA-AGGATTTGTGCAATAATCTCCATTCTTTCAATGA
194 TCAAAGTTTATACCTTAACTGAGACAAACATA-GATTTATGCAATAATCTCCATTCTTTCAATGA
* ** *
4278477 TTGGGCACCATAAACA-GTTATCTTCTTTGGGATGCATAATATTGATTCATTGGTTATGCAAAAA
258 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAA
** * *
4278541 AAGTTTTTCTTGCCACTTATTTCCATAAAGCAAAGTTCGTTCGTCAAA-ATAGAGAAAAATACAT
323 AAGTTTTTCTTGCCACTTATTTCCATAAAGCAAA-TTTATTCGTCAAATA-AGACAAAAATAGAT
* * ** *
4278605 TCTTGTAATAATCTCCATTTTTTTGTGATTAGGCAGCCAAAACACGCTCTCTTCCTTGCAATGCT
386 TCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCA
4278670 TGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGT
451 TGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGT
* * * * *
4278735 TTGTCCCTTAAAAGAGATAATGATGGATTCTCATAATGATCTGCAAAAACAC-GTCT-CTTATTA
516 TTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGAT-TTCAAAAACACATTCTATTTATTA
*
4278798 GGATT-CATGATATTGATGTTTTCATTATAT
580 GG-TTACATGATATTGATGTTTTGATTATAT
* *
4278828 AAGAAAAGCTTTTCTTGCCATGATTTTTCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAACAAACA
* *
4278893 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAAGCAACCAAAACGCATTCTCCTTATTGG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
4278958 GATACATGATATTAAT-CTGTAATTTAAAAAGAAAAGTTTTTTCTTCGTCATTTTCCTTAGAATC
131 GATACATAATATTAATGCTTTGATTTAAAAAGAAAAGTTTTTTCTCCGTCATTTTCCTTAGAATC
*
4279022 AAAGTTTATACCTTAACTGAGACAAACATAAATTTATGCAATAATCTCCATTCTTTCAATGATTG
196 AAAGTTTATACCTTAACTGAGACAAACATAGATTTATGCAATAATCTCCATTCTTTCAATGATTG
* * *
4279087 GGCACCATAAACACGTTATCTTCTTTGGGATGCGCAATATTGATGCATTGGTTATGTAAGAAAAG
261 GGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAG
* * * * *
4279152 TTTTTCTTGCTACTTATTTCCTTAGAGCAAATTTCATTCGTCAAATAATACAAAAATGGATTCTT
326 TTTTTCTTGCCACTTATTTCCATAAAGCAAATTT-ATTCGTCAAATAAGACAAAAATAGATTCTT
* * * * * *
4279217 GTAACAATATCC-CTTTTTTGTGATTAGGTAAG-CAAAACACACTTTCCTCATTGGGATGCATGA
390 GTAATAATCTCCATTTTTTTGTGATTAGGT-AGCCAAAACACGCTCTCTTCATTGGGATGCATGA
* * *
4279280 TATTGATGCTTTGATTTTCACAAGAAATGCTTTT-TTTCTAGTACCTTTTTAAAATCAAAGTTTG
454 TATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTG
*
4279344 TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATTTCAAAAAACACATTCTATTTATTACGT
519 TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATTTC-AAAAACACATTCTATTTATTAGGT
*
4279409 TATATGATATTGATGTTTTGATTATAT
583 TACATGATATTGATGTTTTGATTATAT
** *
4279436 AAGAAAAGCTTTTCTTGCCATAATTTTTCTTATAATTTGAGTTCATATGTCAGATGAAACAAAAC
1 AAGAAAAGCTTTTCTTGCCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAAC-AAAC
* * * * *
4279501 ATTGATTCTTATAATAATCTTTATTCTTTTCATTATTGGGCAACTAAAACACATTCTCCTTATTG
65 ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTG
* * * * * * * *
4279566 GGATTCACAATATTAATGATTTGATTTAATAAGAAAAGTTTTTTTCTCC-ACTGTTTTCTTTGGA
130 GGATACATAATATTAATGCTTTGATTTAAAAAGAAAAG-TTTTTTCTCCGTC-ATTTTCCTTAGA
* * *
4279630 ATCAAAGTTTATACCTTAAATGCA-ACAAACATGGCTTTACT-CAATAATCTCCATTCTTTCAAT
193 ATCAAAGTTTATACCTTAACTG-AGACAAACATAGATTTA-TGCAATAATCTCCATTCTTTCAAT
* * **
4279693 GATTGGACACCATAAACACATTATCTTCTTTGGGATGCACAATATTGACATATTGGTTATGCAAG
256 GATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAG
* *
4279758 AAAAGTTCTTCTTGCCACTTATTTCCATAAAGCAAA-GT-TT-GTCAAATAAGACAAAAATAGAT
321 AAAAGTTTTTCTTGCCACTTATTTCCATAAAGCAAATTTATTCGTCAAATAAGACAAAAATAGAT
* * *
4279820 TCTTGTAATAACCTCCATTTTTTTGTGATTAGGTAGCCAAAACACGTTCTCTTCCTTGGGATGCA
386 TCTTGTAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCA
** * * *
4279885 TGATATTGATGCTTTGATTTTCGGAAGAAATGCTTTTCCTTCCACTACCTTTTTAAAAT-ATAGT
451 TGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGT
** * * * *
4279949 TTGTCTTTTAAAA-AGGACAAAGATGAATTCTCATAACGATGTCCAAAAACACATTCTATTCATT
516 TTGTCCCTTAAAAGA-GACAAAGATGGATTCTCATAATGAT-TTCAAAAACACATTCTATTTATT
* *
4280013 GGGATACATGATATTGATGTTTTGATTATAT
579 AGGTTACATGATATTGATGTTTTGATTATAT
* * * *
4280044 AAGAAAAGCTTTTCTTACCACGA-TTTTCTTTACAATTTGTGTTCATATGCCAAATGAAACAAAC
1 AAGAAAAGCTTTTCTTGCCACGATTTTTC-TTATAATTTGAGTTCATATGTCAAATGAAACAAAC
* * *
4280108 ACGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTTTTCTTATTG
65 ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTG
* * * *
4280173 GGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCGTCGTTTTCCTTAGAA
130 GGATACATAATATTAATGCTTTGATTTAAAAAGAAAAGTTTTTT-CTCCGTCATTTTCCTTAGAA
* * * * * * * * *
4280238 T-AAAGCTTATAACTTAGCTGAGACAAACGTGGTTTTACGCAATAATTATCCCTATTTTTTCAAT
194 TCAAAGTTTATACCTTAACTGAGACAAACATAGATTTATGCAATAA-TCT-CC-ATTCTTTCAAT
** ** * * **
4280302 GATTGGGCACCATATTCATTTTATGTTCTTTGGGATGCAAAATATTGACGCATTGGAAATGCAAG
256 GATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAG
* * * * * *
4280367 AAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAGGTTTATTCATCAAATAATACAAAAATGGA
321 AAAAGTTTTTCTTGCCACTTATTTCCATAAAGCAA-ATTTATTCGTCAAATAAGACAAAAATAGA
* * * *
4280432 TTCTTGTAATACTCTCCATTTTTTTTGTGATTAGG-CGACCAAAACATGCTCTCTTTATTGGGAT
385 TTCTTGTAATAATCTCCA-TTTTTTTGTGATTAGGTAG-CCAAAACACGCTCTCTTCATTGGGAT
* * * *
4280496 GCATGATATTGTTGCTTTAATTTTCTCAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATTAA
448 GCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATCAA
* *
4280561 AATTTGTCTCTTA
513 AGTTTGTCCCTTA
4280574 GCACATTCTA
Statistics
Matches: 1520, Mismatches: 190, Indels: 66
0.86 0.11 0.04
Matches are distributed among these distances:
605 3 0.00
606 110 0.07
607 329 0.22
608 418 0.28
609 333 0.22
610 18 0.01
611 164 0.11
612 4 0.00
613 35 0.02
614 94 0.06
615 12 0.01
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.38
Consensus pattern (609 bp):
AAGAAAAGCTTTTCTTGCCACGATTTTTCTTATAATTTGAGTTCATATGTCAAATGAAACAAACA
TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
GATACATAATATTAATGCTTTGATTTAAAAAGAAAAGTTTTTTCTCCGTCATTTTCCTTAGAATC
AAAGTTTATACCTTAACTGAGACAAACATAGATTTATGCAATAATCTCCATTCTTTCAATGATTG
GGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAG
TTTTTCTTGCCACTTATTTCCATAAAGCAAATTTATTCGTCAAATAAGACAAAAATAGATTCTTG
TAATAATCTCCATTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATA
TTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATCAAAGTTTGTC
CCTTAAAAGAGACAAAGATGGATTCTCATAATGATTTCAAAAACACATTCTATTTATTAGGTTAC
ATGATATTGATGTTTTGATTATAT
Found at i:4282597 original size:19 final size:20
Alignment explanation
Indices: 4282553--4282603 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
4282543 ACCAGTTTCA
*
4282553 TGTATCGATACAATTGAGTG
1 TGTATCGATACAATTGACTG
4282573 TGTATCGATACAA-TGAACT-
1 TGTATCGATACAATTG-ACTG
4282592 TGTATCGATACA
1 TGTATCGATACA
4282604 TTGTATCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (20 bp):
TGTATCGATACAATTGACTG
Found at i:4287361 original size:13 final size:13
Alignment explanation
Indices: 4287343--4287368 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4287333 CAATTTTTTG
4287343 TGTATCGATACAT
1 TGTATCGATACAT
4287356 TGTATCGATACAT
1 TGTATCGATACAT
4287369 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4287453 original size:20 final size:20
Alignment explanation
Indices: 4287428--4287500 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
4287418 CAACTTTTTT
4287428 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
4287448 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
4287469 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
4287489 ATGTATCGATAC
1 ATGTATCGATAC
4287501 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:4287466 original size:41 final size:41
Alignment explanation
Indices: 4287407--4287500 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
4287397 CTGCCAAGAA
*
4287407 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
4287448 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
4287489 ATGTATCGATAC
1 ATGTATCGATAC
4287501 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:4287482 original size:21 final size:21
Alignment explanation
Indices: 4287407--4287482 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
4287397 CTGCCAAGAA
* *
4287407 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
4287428 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
4287448 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
4287469 ATGTATCGATACAT
1 ATGTATCGATACAT
4287483 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:4292001 original size:15 final size:15
Alignment explanation
Indices: 4291981--4292011 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4291971 ATTTTGTTTG
*
4291981 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
4291996 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
4292011 G
1 G
4292012 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:4293843 original size:21 final size:21
Alignment explanation
Indices: 4293814--4293858 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4293804 AAGTTTTCAT
*
4293814 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
4293834 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
4293856 TTT
1 TTT
4293859 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:4296094 original size:13 final size:13
Alignment explanation
Indices: 4296076--4296101 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4296066 CAATTTTTTG
4296076 TGTATCGATACAT
1 TGTATCGATACAT
4296089 TGTATCGATACAT
1 TGTATCGATACAT
4296102 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4296186 original size:20 final size:20
Alignment explanation
Indices: 4296161--4296233 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
4296151 CAACTTTTTT
4296161 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
4296181 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
4296202 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
4296222 ATGTATCGATAC
1 ATGTATCGATAC
4296234 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:4296199 original size:41 final size:41
Alignment explanation
Indices: 4296140--4296233 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
4296130 CTGCCAAGAA
*
4296140 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
4296181 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
4296222 ATGTATCGATAC
1 ATGTATCGATAC
4296234 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:4296215 original size:21 final size:21
Alignment explanation
Indices: 4296140--4296215 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
4296130 CTGCCAAGAA
* *
4296140 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
4296161 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
4296181 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
4296202 ATGTATCGATACAT
1 ATGTATCGATACAT
4296216 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:4301515 original size:21 final size:21
Alignment explanation
Indices: 4301491--4301531 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4301481 AATTCTCTCA
* *
4301491 TTTTCTTTCATTCTTCTATCT
1 TTTTCTCTCATCCTTCTATCT
*
4301512 TTTTCTCTCCTCCTTCTATC
1 TTTTCTCTCATCCTTCTATC
4301532 ATCCCTCCTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.32, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTCTCTCATCCTTCTATCT
Found at i:4301567 original size:42 final size:42
Alignment explanation
Indices: 4301520--4301639 Score: 141
Period size: 42 Copynumber: 2.9 Consensus size: 42
4301510 CTTTTTCTCT
* * * * * *
4301520 CCTCCTTCTATCATCCCTCCTCTCTCTATTATCTCTCATGTT
1 CCTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCATATC
* * *
4301562 TCTCCTCCTATCATTCCTTCTATCTCTACTATCTCTCCTATC
1 CCTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCATATC
* *
4301604 CCTCCTCCTATCATCCCTTCTATCTCTTCTTTCTCT
1 CCTCCTCCTATCATCCCTTCTATCTCTACTATCTCT
4301640 TTGAGGGCTA
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.12, C:0.42, G:0.01, T:0.46
Consensus pattern (42 bp):
CCTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCATATC
Found at i:4303755 original size:41 final size:41
Alignment explanation
Indices: 4303701--4303785 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
4303691 AAAAAGTTTA
*
4303701 TATGGAGTTTTCTTTAAAATTGACCTAATCATATCTTGGTT
1 TATGGAGTTTTCTTTAAAATTGACCTAATCATAGCTTGGTT
4303742 TATGGAGTTTTCTTTAAAATTGACCTAATCATAGCTTGGTT
1 TATGGAGTTTTCTTTAAAATTGACCTAATCATAGCTTGGTT
4303783 TAT
1 TAT
4303786 AATATAGCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (41 bp):
TATGGAGTTTTCTTTAAAATTGACCTAATCATAGCTTGGTT
Found at i:4307600 original size:19 final size:20
Alignment explanation
Indices: 4307554--4307600 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
4307544 CTGCTAGTTT
*
4307554 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAA
**
4307574 TGTGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
4307593 CATGTATC
1 CATGTATC
4307601 AATATGATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:4309360 original size:610 final size:607
Alignment explanation
Indices: 4308068--4309707 Score: 2218
Period size: 610 Copynumber: 2.7 Consensus size: 607
4308058 ATTTGAGTTC
* * * ** * *
4308068 CTTATAATAAGCTTCATTCA-TTCCATGATTAGGCAA-CAAAACGCATTCTCCTTATAGGGATAC
1 CTTATAATAATCTTCATT-ATTTACATGATTACGCAACCAAAACATATTCCCCTTAT-TGGATAC
* * * *
4308131 ATGATATTAACGCTTTGATTTCATAAGAAAAGCATTTTT-T-CACTGTTTTCCTTAGAATCAATG
64 ATGATATTAATGCTTTGATTTCATAAGAAAAGAATTTTTCTCCACCGTTTTCCTTAGAATCAAAG
* * * *
4308194 TTTACACCTTAAATGAGACAATCATGGATTTAC-AAATAATCTCCACTCTTTCAATGATTGGGCA
129 TTTATACCTTAAATGAGGCAAACATGGATTTACGAAATAATCTCCATTCTTTCAATGATTGGG--
* * *
4308258 CCATAAACAAGTTCTTCTTATTGGGATGCACAATATTGACGCATTGGTTATG-AAGGAAAAGTTT
192 CCATAAACACGTT-ATCTTATTGGGATGCACAATATTGATGCATTGGTTATGCAA-GAAAAGTTT
* * * ***
4308322 TCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTTGTCAAATGAGACAAAAATGGATTCGAGTAA
255 TCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTCTAA
* * * *
4308387 TAATCTCCACT-TTTTGTGATTAGAAAGCCAAAACGTGCTCTCTTCATTGGGATGCATGATATTA
320 TAATCTCCATTATTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTG
***
4308451 ATTCATTGATTTTTCGCAAGAAATGCTTTTCTTTCCACAACCTTTTTAAAATCAAAGTTTGCCCC
385 ATTCATTGA-TTTTCGCAAGAAATGCTTTTCTTTCCACAACCTTCAGAAAATCAAAGTTTGCCCC
* * * *
4308516 TTAAAAGAGACAAAGATGGATTCTTATAATGATCTCTAAAAACATATTCTATTCATTAGGATACA
449 TTAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACA
** *
4308581 TAATATTGATATTTTGATTATATAAGAAAAGCTTTTCTTGCCATGATTTTTCTTATAATTTGAGT
514 TAATATTGATATTTTGATTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGT
4308646 TCATATGTCAAATGAAACAAACATGGATT
579 TCATATGTCAAATGAAACAAACATGGATT
* * *
4308675 CTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACATATTCCCCTTATTGAGATACA
1 CTTATAATAATCTTCATTATTTACATGATTACGCAACCAAAACATATTCCCCTTATTG-GATACA
** * * ** *
4308740 CAAGATTAATGCATTGATTTCATAAGAAAAGTTTTTTTTCTCCACCATTTTCCTTAGAATCAAAG
65 TGATATTAATGCTTTGATTTCATAAGAAAAG-AATTTTTCTCCACCGTTTTCCTTAGAATCAAAG
* * * *
4308805 TTTATACCTTAAAAGAGGCAAACATGGATTTACGCAATAATCTCCTTTCTTTCAATGATTAGG-C
129 TTTATACCTTAAATGAGGCAAACATGGATTTACGAAATAATCTCCATTCTTTCAATGATTGGGCC
*
4308869 ATAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTAATGCAAGAAAAGCTTTTC
194 ATAAACACGTTATCTT-ATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAG-TTTTC
* * * * *
4308934 TTGCAACTTATTTCTTTAAAGCAAAGTGCATTCATCAAATAAGACAAAAAAGGATTATTCTAATA
257 TTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTCTAATA
4308999 ATCTCCATTATTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGAT
322 ATCTCCATTATTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGAT
* *
4309064 TCATTGATTTTCGCAAGAAATGCTTTTCTTTGCACAACCTTCAGAAAATCAAAGTTTGTCCCTTA
387 TCATTGATTTTCGCAAGAAATGCTTTTCTTTCCACAACCTTCAGAAAATCAAAGTTTGCCCCTTA
* *
4309129 AAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGATACATGA
452 AAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACATAA
* *
4309194 TATTGTTGTTTTGATTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGTTCA
517 TATTGATATTTTGATTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGTTCA
*
4309259 TATGTCAAATGAATCAAACATGGATT
582 TATGTCAAATGAAACAAACATGGATT
* * ** *
4309285 CTTATAATAATCTTCATTATTTACATGATTACGTAACCTAAACATATTCTGCTTTTTAGGATACA
1 CTTATAATAATCTTCATTATTTACATGATTACGCAACCAAAACATATTCCCCTTATT-GGATACA
* * *
4309350 TGATATTAATGCTTTGATTTCATAAGGAAAGAATTTTTCCCCACCGTTTTCCTTAGGATCAAAGT
65 TGATATTAATGCTTTGATTTCATAAGAAAAGAATTTTTCTCCACCGTTTTCCTTAGAATCAAAGT
* * * * *
4309415 TTATACATTAAATGAGGCGAACATGGATTTACGTAATAATCTCCGTTCTCTCAATGATTGGGCAC
130 TTATACCTTAAATGAGGCAAACATGGATTTACGAAATAATCTCCATTCTTTCAATGATTGGGC-C
* *
4309480 TATAAACACGGTATCCTTATTGGGATGCATAATATTGACT-CATTGGTTATGCAAGAAAAGTTTT
194 -ATAAACACGTTAT-CTTATTGGGATGCACAATATTGA-TGCATTGGTTATGCAAGAAAAG-TTT
*
4309544 TCTTGCCACTTATTTCCTTAAAGAAAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTCTAA
255 TCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTCTAA
* * * *** * * * *
4309609 TGATCTCCATTATTTTGTGATTAGGTAGGCAAAACACATTCCCTTCATTAGCATGCATGATATGG
320 TAATCTCCATTATTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTG
* * *
4309674 ATGCTTTGATTTTCGCAAGAAATGCTTTTATTTC
385 ATTCATTGATTTTCGCAAGAAATGCTTTTCTTTC
4309708 TAGTATCGTT
Statistics
Matches: 906, Mismatches: 110, Indels: 29
0.87 0.11 0.03
Matches are distributed among these distances:
607 33 0.04
608 52 0.06
609 137 0.15
610 348 0.38
611 110 0.12
612 222 0.25
613 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (607 bp):
CTTATAATAATCTTCATTATTTACATGATTACGCAACCAAAACATATTCCCCTTATTGGATACAT
GATATTAATGCTTTGATTTCATAAGAAAAGAATTTTTCTCCACCGTTTTCCTTAGAATCAAAGTT
TATACCTTAAATGAGGCAAACATGGATTTACGAAATAATCTCCATTCTTTCAATGATTGGGCCAT
AAACACGTTATCTTATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTTCTTGC
CACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAAAGGATTCTTCTAATAATCT
CCATTATTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATATTGATTCAT
TGATTTTCGCAAGAAATGCTTTTCTTTCCACAACCTTCAGAAAATCAAAGTTTGCCCCTTAAAAG
AGACAAAGATGAATTCTCATAATGATCTCCAAAAACACATTCTATTCATTAGGATACATAATATT
GATATTTTGATTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGTTCATATG
TCAAATGAAACAAACATGGATT
Found at i:4309844 original size:122 final size:122
Alignment explanation
Indices: 4309627--4309862 Score: 402
Period size: 122 Copynumber: 1.9 Consensus size: 122
4309617 ATTATTTTGT
*
4309627 GATTAGGTAGGCAAAACACATTCCCTTCATTAGCATGCATGATATGGATGCTTTGATTTTCGCAA
1 GATTAGGTAGGCAAAACACATTCCCTTCATTAGCATGCATGATATCGATGCTTTGATTTTCGCAA
4309692 GAAATGCTTTTATTTCTAGTATCGTTTTAAAATCAAAGTTTGTCCTTTCTTTATTGG
66 GAAATGCTTTTATTTCTAGTATCGTTTTAAAATCAAAGTTTGTCCTTTCTTTATTGG
* * * * *
4309749 GATTAGGTAGGCAAAACACGCTT-TCTTTATTGGGATGCATGATATCGATGCTTTGATTTTCGCA
1 GATTAGGTAGGCAAAACAC-ATTCCCTTCATTAGCATGCATGATATCGATGCTTTGATTTTCGCA
4309813 AGAAATGCTTTTATTTCTAGTATCGTTTTAAAATCAAAGTTTGTCCTTTC
65 AGAAATGCTTTTATTTCTAGTATCGTTTTAAAATCAAAGTTTGTCCTTTC
4309863 AAAGAGACAA
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
122 105 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (122 bp):
GATTAGGTAGGCAAAACACATTCCCTTCATTAGCATGCATGATATCGATGCTTTGATTTTCGCAA
GAAATGCTTTTATTTCTAGTATCGTTTTAAAATCAAAGTTTGTCCTTTCTTTATTGG
Found at i:4310399 original size:161 final size:157
Alignment explanation
Indices: 4309915--4310441 Score: 416
Period size: 158 Copynumber: 3.3 Consensus size: 157
4309905 CTTCTATTCA
* * ** * *
4309915 TTGGGATACATGATATTGATGTTTTGA-TTATATAAGAAAAGCTTTTCTTGCCACTATTTTCCTT
1 TTGGGATACACGATATTAATGCATTGAGCTA-ATAAGAAAAGCTTTTCTTTCCA-TATTTTCCTT
* * *
4309979 ATAATTTGAGTTCG--TATATCAAATGAAACAAATATGGATTCTTACAATAATCTTCATTCTTTT
64 AT-ATTTGAGTTCGTATATATTAAATG-AACAAACATGGATTCTTATAATAATCTTCATTCTTTT
*
4310042 CATGATTAGGCAACCAAACCACATTCTCTTT
127 CATGATTAGGCAACCAAAACACATTCTCTTT
* ** * *
4310073 ATTGGGATACACGATATTAATGCTTTGATTTAATAAGAAAAG-TTTT-TTTCCCACCATTTTACT
1 -TTGGGATACACGATATTAATGCATTGAGCTAATAAGAAAAGCTTTTCTTT-CCA-TATTTTCCT
* * ** ** * ** * *
4310136 TAGAATCAAAAT-ATATACCTTAACTGAGACAAACATGGA-T-TTACTCAATAATCTCCATTC-T
63 TATATTTGAGTTCGTATATATTAAATGA-ACAAACATGGATTCTTA-T-AATAATCTTCATTCTT
* * * * *
4310197 TTCAATAATTGGGC-ACCATAAACACGTTATCTTCA
125 TTC-ATGATTAGGCAACCA-AAACACATTCTCTT-T
* * *
4310232 TTGGGATGCACAATATTGATGCATTG-GCT-ATGCAAGAAAAGCTTTTCTTTCCATGATTTTCCT
1 TTGGGATACACGATATTAATGCATTGAGCTAAT--AAGAAAAGCTTTTCTTTCCAT-ATTTTCCT
* *
4310295 TATATTTTGAGTTCGTATATATTAAATGTAACAAACATAGATTCTTATAATTATCTTCATTCTTT
63 TATA-TTTGAGTTCGTATATATTAAATG-AACAAACATGGATTCTTATAATAATCTTCATTCTTT
*
4310360 TCATGATTAGGCAAACAAAACACATTCTCCTTT
126 TCATGATTAGGCAACCAAAACACATTCT-CTTT
* ** *
4310393 TTGGGATACACGATATTAATGCTTTGATTTAATAAAAAAAG-TTTT-TTTC
1 TTGGGATACACGATATTAATGCATTGAGCTAATAAGAAAAGCTTTTCTTTC
4310442 TCCACCGTTT
Statistics
Matches: 283, Mismatches: 60, Indels: 50
0.72 0.15 0.13
Matches are distributed among these distances:
156 5 0.02
157 17 0.06
158 96 0.34
159 55 0.19
160 13 0.05
161 78 0.28
162 14 0.05
163 5 0.02
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (157 bp):
TTGGGATACACGATATTAATGCATTGAGCTAATAAGAAAAGCTTTTCTTTCCATATTTTCCTTAT
ATTTGAGTTCGTATATATTAAATGAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATG
ATTAGGCAACCAAAACACATTCTCTTT
Found at i:4310568 original size:320 final size:317
Alignment explanation
Indices: 4309948--4310611 Score: 1019
Period size: 320 Copynumber: 2.1 Consensus size: 317
4309938 TTGATTATAT
*
4309948 AAGAAAAGCTTTTCTTGCCACTATTTTCCTTATAATTTGAGTTCGTATATCAAATGAAACAAATA
1 AAGAAAAGCTTTTCTTGCCACTATTTTCCTTATAATTTGAGTTCGTATATCAAATGAAACAAACA
* * *
4310013 TGGATTCTTACAATAATCTTCATTCTTTTCATGATTAGGCAACCAAACCACATTCTCTTTATTGG
66 TAGATTCTTACAATAATCTTCATTCTTTTCATGATTAGGCAAACAAAACACATTCTCTTTATTGG
*
4310078 GATACACGATATTAATGCTTTGATTTAATAAGAAAAGTTTTTTTCCCACCATTTTACTTAGAATC
131 GATACACGATATTAATGCTTTGATTTAATAAAAAAAGTTTTTTTCCCACCATTTTACTTAGAATC
* *
4310143 AAAATATATACCTTAACTGAGACAAACATGGATTTACTCAATAATCTCCATTCTTTCAATAATTG
196 AAAATATATACCTTAACTGAGACAAACAAGGATTTACGCAATAATCTCCATTCTTTCAATAATTG
* *
4310208 GGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGCTATGC
261 GGCACCATAAACACGTTATATTCATTGGGATGCACAATATTGATGCATTAGCTATGC
* * * *
4310265 AAGAAAAGCTTTTCTTTCCA-TGATTTTCCTTATATTTTGAGTTCGTATATATTAAATGTAACAA
1 AAGAAAAGCTTTTCTTGCCACT-ATTTTCCTTATAATTTGAGTTCG--TATATCAAATGAAACAA
* *
4310329 ACATAGATTCTTATAATTATCTTCATTCTTTTCATGATTAGGCAAACAAAACACATTCTCCTTT-
63 ACATAGATTCTTACAATAATCTTCATTCTTTTCATGATTAGGCAAACAAAACACATTCT-CTTTA
* *
4310393 TTGGGATACACGATATTAATGCTTTGATTTAATAAAAAAAGTTTTTTTCTCCACCGTTTTCCTTA
127 TTGGGATACACGATATTAATGCTTTGATTTAATAAAAAAAGTTTTTTTC-CCACCATTTTACTTA
* * * *
4310458 GAATCGAAGTTTATACCTTAACTGAGACAAACAAGGATTTGCGCAATAATCTCCATTCTTTCAA-
191 GAATCAAAATATATACCTTAACTGAGACAAACAAGGATTTACGCAATAATCTCCATTCTTTCAAT
** *
4310522 AGATTGGGCACCATAAACACGTTATATTTTTTGGGATGCACAATATTGATGCATTAGTTATGC
256 A-ATTGGGCACCATAAACACGTTATATTCATTGGGATGCACAATATTGATGCATTAGCTATGC
*
4310585 AAGAAAAGTTTTTCTTGCCACTTATTT
1 AAGAAAAGCTTTTCTTGCCAC-TATTT
4310612 CCATAAAGCA
Statistics
Matches: 313, Mismatches: 26, Indels: 12
0.89 0.07 0.03
Matches are distributed among these distances:
316 1 0.00
317 41 0.13
319 117 0.37
320 149 0.48
321 4 0.01
322 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (317 bp):
AAGAAAAGCTTTTCTTGCCACTATTTTCCTTATAATTTGAGTTCGTATATCAAATGAAACAAACA
TAGATTCTTACAATAATCTTCATTCTTTTCATGATTAGGCAAACAAAACACATTCTCTTTATTGG
GATACACGATATTAATGCTTTGATTTAATAAAAAAAGTTTTTTTCCCACCATTTTACTTAGAATC
AAAATATATACCTTAACTGAGACAAACAAGGATTTACGCAATAATCTCCATTCTTTCAATAATTG
GGCACCATAAACACGTTATATTCATTGGGATGCACAATATTGATGCATTAGCTATGC
Found at i:4311772 original size:607 final size:605
Alignment explanation
Indices: 4310265--4324608 Score: 12864
Period size: 611 Copynumber: 23.7 Consensus size: 605
4310255 TTGGCTATGC
* * * * * *
4310265 AAGAAAAGCTTTTCTTTCCATGATTTTCCTTATATTTTGAGTTCGTATATATTAAATGTAACAAA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCG--TATGTCAAATGAAACAAA
* * *
4310330 CATAGATTCTTATAATTATCTTCATTCTTTTCATGATTAGGCAAACAAAACACATTCTCCTTTTT
63 CATGGATTCTT-T-A--ATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATT
* * *
4310395 GGGATACACGATATTAATGCTTTGATTTAATAAAAAAAGTTTTTTTCTCCACCGTTTTCCTTAGA
124 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGA
* * * ** *
4310460 ATCGAAGTTTATACCTTAACTGAGACAAACAAGGATTTGCGCAATAATCTCCATTCTTTCAAAGA
189 ATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
* * *
4310525 TTGGGCACCATAAACACGTTATATTTTTTGGGATGCACAATATTGATGCATTAGTTATGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * * * * **
4310590 AAGTTTTTCTTGCCACTTATTTCCATAAAGCAAAGCTCGTTTGTCAAA-ATAGACAAAAATACAT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATA-ATACAAAAATGGAT
* * **
4310654 TCTTGTAATAAT--CTTTACTCTTTTGTGATTAGGTAGCCAAAACACGCTCTCCTCCTT-ACAGT
383 TCTTGTAATAATCCCTTT--T-TTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGA-T
*
4310716 GCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCATTTCAAAATCAA
444 GCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAA
* * *
4310781 AGTTTGTTCCC-TAAAAGAGATAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCAATTT
508 AGTTTG-TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTC
* *
4310845 ATTGGGATACACGATATTGATGCTTTGATTATAT
572 ATTGGGATACATGATATTGATGTTTTGATTATAT
* * *
4310879 AAGAAAAGCTTTTCTTGCCATGATTTTCC---T--TGT-GTTTGTATGTCAAATGAAACAAACAT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGGTTCGTATGTCAAATGAAACAAACAT
* * **
4310938 GGATTCTTATAGTAATCTTCATCCTTTTCCTGAGTT--G----CAAAACACATTC-CCTATATCA
66 GGATTC-T-T--TAATCTTCATTCTTTTCATGA-TTAGGCAACCAAAACACATTCTCCT-TATTG
* * * *
4310996 GGATTCACGATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTTCA-TCATTTTCCTTAGA
125 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGA
** * * *
4311060 ATCAAAGTTTATACCTTAAATGAGACAAACAAAGATTTACGTAATAATCTCCATTCATTCAATGA
189 ATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
* * * ** *
4311125 TTGGGCACCATAAACACGTTATCTTTTTTCGGATGCACAATATTGATGAATTGCATATGTAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* *
4311190 AAGTTTTTCTTGCTACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAATAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* * *
4311255 CTTGCAGCGAT-ATCCCTTTTTTTTGTGATTAGGTAGGCAAAACACGCTCTTTTCATTGGGATGC
384 CTTGTA---ATAATCCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGC
* *
4311319 AAGATATTGATGCTTAT-ATTTTCACAAGAAATGCTTTT-TTTCCACTACCTTTATAAAATCAAA
446 ATGATATTGATGCTT-TGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTT-TAAAATCAAA
* * *
4311382 GTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGAGCTGCAAAAACACATTCTATTTAT
509 GTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCAT
4311447 TGGGATACATGATATTGATGTTTTGATTATAT
574 TGGGATACATGATATTGATGTTTTGATTATAT
* * * * *
4311479 AAGAAAAGCATTTCTTGCCAAGATTTTTCTTATAATTTGGCCTCATATGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGG-TTCGTATGTCAAATGAAACAAACA
* * *
4311544 TGGATTC-TTAATCTTCATTATTTTCATGATTAGTCAACCAAAACACTTTCTCCTTATTGGGATA
65 TGGATTCTTTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATA
* * * * *
4311608 CATGATATTAATGCTTTAATTTAAAAAGAAAAGTTTTTTTCTTCACTGTTTTCCTTAGAATCAAA
130 CACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAATCAAA
* * * *
4311673 GTTTAGACCTTAACTGAGACAAACATAGATTTATGCAATAATCTCCATTCTTTCAGTGATTGGGC
195 GTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGC
* * * * *
4311738 ACAATAAACATGTTATCTT-TTTCGGGATGCACAATATTGACGTATTGGTTATGTAAGAAAAGTT
260 ACCATAAACACGTTATCTTCTTT-GGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTT
* * * * * * *
4311802 TTACTTGCTACATATTTCCTTAAAGCAGAA-TTGATTCGTCAAATAATACAATAATAGATTCTTA
324 TTTCTTGCCACTTATTTCCTTAAAGCA-AAGTTCATTCGTCAAATAATACAAAAATGGATTCTTG
* * * * *
4311866 TAACAAAATCCC-TCTTTTTGTGATTAGGTAGGCAAAACACGCTTTATTCATTGGGATGCATGAT
388 T-A-ATAATCCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGAT
* * *
4311930 ATTGATGCTTCGATTTTCACAAGAAATGCTTTTCTTTCCGGC-ACCTTTTTAAAATCAAAGTTTG
451 ATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCC-ACTACC-TTTTAAAATCAAAGTTTG
* * * * * *
4311994 TCCCCTAAAAGAGACAAAGATGGATTCTTATAATGATCTCAAAAAACACATTCTATTTATTAGGT
514 TCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGA
*
4312059 TATATGATATTGATGTTTTGATTATAT
579 TACATGATATTGATGTTTTGATTATAT
* *
4312086 AAGAAAAGCTTTTCTTGCCACGATTTTTCTTATAATTTGAGTTCGTATGCCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * *
4312151 TAGATTC-TTAATCTTCATTATTTTCATGATTAGGCAACCAAAACACTTTCTCCTTATTGGGATA
65 TGGATTCTTTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATA
* * * * * *
4312215 CATGATATTAATGCTTTAATTTAAAAAGAAAAGTTTTTTTCTTCACCGTTTTCCTTAGAATCAAA
130 CACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAATCAAA
* * * *
4312280 GTTTAGACCTTAACTGAGACAAACATAGATTTATGCAATAATCTCCATTCTTTCAACGATTGGGC
195 GTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGC
* * * * * *
4312345 ACCATAAACACGTTTTCTTCTTCGGGATGCACAATATTGACGTATTGGTTATGTATGAAAAGTTT
260 ACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTT
* * * * * * * *
4312410 TACTTGCTACATATTTCCTTAAAGCAAATTTCATTCATCAAATAATACAATAATAGATTCTTATA
325 TTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTGT-
* * * *
4312475 ACAAAATCCC-TCTTTTTGTGATTAGGTAGGCAAAACACGCTTTCTTCATTGGGATGCATGATAT
389 A-ATAATCCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATAT
* * *
4312539 TGATGCTTTGATTTTCACAAGAAACGCTTTTCTTTCCAGTACCTTTTTAAAATCAAAGTTTGTCC
453 TGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTTTGTCC
* * * * * *
4312604 CTTAAAAGAGACGAAGATGGATTCTCATAATGATCTCAAAAAACACATTCTATTTATTAGGTTAT
517 CTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGATAC
*
4312669 ATGATTTTGATGTTTTGTTTGATTATAT
582 ATGATATTGATG---T-TTTGATTATAT
* * * *
4312697 AAGAAAAGCTTTCCTTGCAATGATTTTCCTTATAATTTGAGTTCGTATGTCAGATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
*
4312762 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTGGGCAACCAAAACACATTCTCCTTATTGG
65 TGGATTC-T-T--TAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
4312827 GATACACGATATTAATGCTTTGATTTAATAAGAAAAGTTTTTTTTCTCCACCGTTTTCTTTGGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTTCTCCACTGTTTTCCTTAGAA
* * * *
4312892 TCAAAGTTTATATCTAAAAAGAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCAATGAT
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAT
* * *
4312957 TGGGAACCATAAACAAGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAA
255 TGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAA
* * ** *
4313022 AGTTTTTCTTGCTACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATAATATGAAAATGGATCC
320 AGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTC
* * * *
4313087 TTGTAATAATATCCTCTTTTTTTGTGATTAGGTAGGCAAAACACGCTTTCTTTATTGGGATGCAT
385 TTGTAATAAT-CCCT-TTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCAT
* * * * *
4313152 GATATCGATGCTTTGATTTTCGCAAGAAATGCTTTTATTTCTAGTATCGTTTTAAAATCAAAGTT
448 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTA-CCTTTTAAAATCAAAGTT
* * * * *
4313217 TGTCCTTTCAAAGAGACAAGGACGGATTCTCTTAATGATCTCCAAAAACACATTCTATTCATTGG
512 TGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGG
4313282 GATACATGATATTGATGTTTTGATTATAT
577 GATACATGATATTGATGTTTTGATTATAT
* * *
4313311 AAGAAAAGCTTTTCTTGCCACAATTTTCTTTATAATTTGAGTTCGTATGTCAAATGAAACAAACT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* *
4313376 TGGATTCTTATATTAATCTTCATTCTTTTCATGATTAGGCAACCAAAAAAAAATTCT-CTTATTG
65 TGGATTC---T-TTAATCTTCATTCTTTTCATGATTAGGCAACC-AAAACACATTCTCCTTATTG
* * *
4313440 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTCCTCCACCGTATTCCTTAGAA
125 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAA
** * * * * *
4313505 TCAAAGTTTATACCTTAGCTGAGACAAACGTGTATTTACGCAATAATCCCCATTC--TC--TTAT
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAT
** * * * *
4313566 TGGGCACCATATTCATGTTATCTTCTTTGGGATGCACAATATTAACGCATTGGTTTTGCAAGAAA
255 TGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAA
* * * * * *
4313631 AGCTTTCCTTGCCCCCTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAATACAAAAATGGATTA
320 AGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTC
* * * * * **
4313696 TTGTAATAATCTCCATTTTTTTCTGATTAAGTAGCCAAAACATGCTCTTTTTGTTGGGATGCATG
385 TTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATG
* * * *
4313761 ATATTAATGCTTTGATTTACTCAAGAAATGCTTTTCTTTCCACTACCATTTTAAAATTAAAGTTT
449 ATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTTT
* * * ** * *
4313826 GTCCCTTAAGAGGGACAAAGATGGATTCTAATAGCGATCTCCAAAAACACAATCTTTTTCATTGG
513 GTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTC-TATTCATTGG
*
4313891 GATACATGGTATTGATGTTTTGATTATAT
577 GATACATGATATTGATGTTTTGATTATAT
* * ** * * * * *
4313920 AAGAGAAGCTTTTCTAGAAATGATATTCCTTATAATTTCAGTCCGTATGTCAAATGAAACAAATA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTT-GGTTCGTATGTCAAATGAAACAAACA
* *
4313985 CGGATTCTTATAATAATCTTCA-TCATTTTC-TAGATTAGGCAACCAAAACACATTCCCCTTATT
65 TGGATTC-T-T--TAATCTTCATTC-TTTTCAT-GATTAGGCAACCAAAACACATTCTCCTTATT
* ** * *
4314048 GGGATACATGATATTAAAACTTTGATTTCATAAGAAAAGCTTTTTTCTCCATTGTTTTCCTTAGA
124 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGA
* * *
4314113 ATCAAAGTTTATACCTTAAATGAGACATACAAGGATTTATGCAATAATCTCCACTCTTTCAATGA
189 ATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
* * *
4314178 TTGGCCACCATAAACACGTTATCTTCTTTAGGATGCACAATATTGATGCATTGGTTATGTAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * *
4314243 AAGTTTTTCTTGCTACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATAATACAATAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* * * * * *
4314308 CTTGAAACAATATCCC-TTTTTTTATGATTAGGCAAG-CAAAACACGCTCCCTTCATTAGGATGC
384 CTTGTAA-TA-ATCCCTTTTTTTTGTGATTAGG-TAGCCAAAACACGCTCTCTTCATTGGGATGC
* *
4314371 AAGATATTGATGCTTTGATTTTTGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAG
446 ATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAG
* *
4314436 TTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCACAAACACATTCTATTTATT
510 TTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATT
* *
4314501 GGAATACATGATATTGATATTTTGATTATAT
575 GGGATACATGATATTGATGTTTTGATTATAT
* * * * *
4314532 AAGAAAAGCTTTTCTTCCCATGATTTTCTTTATACTTTGAGTTC--CT-T---AT--AAC--A-A
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* *
4314586 --G---C-TTCA--TTCATTC----CCTGATTAGGCAA-CAAAACACATTCTCCTTATTGGGATA
65 TGGATTCTTTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATA
* * * *
4314638 CACGATATTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTTCATTGTTTTCCTTAGAATCAAT
130 CACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAATCAAA
* *** *
4314703 GTTTATACCTTAAATGAGACAATCATGGATTTACATAATAATCTCCACTCTTTCAATGATTGGGC
195 GTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGC
*
4314768 ACCATAAACAAGTTCA-CTT-TATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAG-
260 ACCATAAACACGTT-ATCTTCT-TTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGT
* * * *
4314830 TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAATGAGACAAAAATGGATTCGTG
323 TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTG
** * *
4314895 TAATAATCTCC-ACTTTTTGTGATTAGGAAGCCAAAACATGCTCTCTTCATTGGGATGCATGATA
388 TAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATA
* * * *
4314959 TTGATTCATTAATTTTCGCAAGAAATGCTTTTCTTTCCACAACCTTTTTAAAATCAAAGTTTG-C
452 TTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTTTGTC
* * *
4315023 CCTTTAAAAGACACAAAGATGGATTCTTATAATGATCTCCAAAAACACATTCTATTCATTAGGAT
516 CC-TTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGAT
* *
4315088 ACATAATTATTGATGTTTTGATGATAT
580 ACATGA-TATTGATGTTTTGATTATAT
** * * * *
4315115 GAA-AAAAGCTTTTCTTGTGACGACTTT-ATTATAATTTAAGTTCATATGTCAAATGAAACAAAC
1 -AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTT-GGTTCGTATGTCAAATGAAACAAAC
* * *
4315178 ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTATGG-AGCCAAAACACATTCCCCTTGTT
64 ATGGATTC-T-T--TAATCTTCATTCTTTTCATGATTA-GGCAACCAAAACACATTCTCCTTATT
* * ** **
4315242 AGGATACACGAGATTAATGAATTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGA
124 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGA
* * * * *
4315307 ATTAAAGTTTATACCTTAAATGAGGCAAACATAGATTTACGCAATAA--TCCTTTCTTTCAATGA
189 ATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
* * * * *
4315370 CTAGG---CATAAACACGTTATCTTCATTGAGATGCACAATATTGATGCATTGGTAATGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * * * *
4315432 AAGATTTTCTTGCAACTTATTTCCTTAAAGCAAAGTGCATTCATCAAATAAAAC-AAAA-GGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* * * * * *
4315495 CTAGTAACAATATCCTTTTTTTCGTGATTAAGTAGCCAAAACACGCTTTCTTCATTGGGATGCAT
384 CTTGTAATAAT-CCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCAT
* * *
4315560 GATATTGACGCTTTGATTTTTGCAAGTAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTT
448 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTT
* * * ** * *
4315625 T-TCCCCTTAAAA-AAACAAAGATGGATTCTTAAAATGATCTTTAAAAACACATTATATTCATTA
512 TGT-CCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTG
4315688 GGATACATGATATTGATGTTTTGATTATAT
576 GGATACATGATATTGATGTTTTGATTATAT
* * * * * *
4315718 AAGAAAAGCTTTTCTTGCCACGATTTTTCTTACAATTTGAATTCATCTGTCAAGTGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * * **
4315783 TAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAACCACATTCCCCTTATCAG
65 TGGATTC-T-T--TAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * *
4315848 GATACACGATATTAATGCTTTGATTACATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTGGAAT
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAAT
* * ** * * *
4315913 CAAAGTTTGTTCCTTAGCTGAGTCAAACATGGATTTACGTAATAATCTCCATTCTTTCAATGATT
191 CAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGATT
* ** * * **
4315978 GGGTACCAT-ATTATGTTATCTTCTCTGGGATGCACAATATTGATGCATTGGGAATGCAAGAAAA
256 GGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAA
* ** * ** *
4316042 GCTTTTCTTTTCACTTATTTCCTTAAAGCAAAGTTTATTCAACAAATAATAAAAAAAATGGATTC
321 GTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAT-ACAAAAATGGATTC
* * * * * * *
4316107 TTGTAATAATCTTCATTTTTTT-T-ATCAAGCAGCCAAAACCCGCTCTTTTCATTGGGATGCATG
385 TTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATG
* * * * * *
4316170 ACAGTGATGCTTTGATTTTCTCAAGAAATTCTTTTCTTTTCACTACCCTTTTAAAATTAAAGTTT
449 ATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTA-CCTTTTAAAATCAAAGTTT
* * * ** *
4316235 TTCCCTTAAAAGAGACAAAGATAGATTCTCACAGCGATCTCCAAAAGCACATTCTATTCATTGGG
513 GTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGG
4316300 ATACATGATATTGATGTTTTGATTATAT
578 ATACATGATATTGATGTTTTGATTATAT
* * * * * * *
4316328 AAAAAAAGCTTTTCTAGCCACTATATTCCTTATAATTTGAGTTTGTATGTCAAGTGAAACAAACT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * ** * * * ** ** * *
4316393 TGATATTCCTTATAATATCGGGGTACATGATATTAATGCTTTGATTTCATAAGAAAA-GCATTTT
65 TG-GATT-CTT-T-A-ATC----TTCATTCTTTTCATG-ATT-A-GGCA-ACCAAAACACATTCT
* * *** * * * * * * ** ***
4316457 TCTTCATCGTTTTACACAAAAATCAAAG-TTTG-TCCCTTAAGAGAGACAAAAATGGATTC-CCA
117 CCTT-ATTGGGATACAC-GATATTAATGCTTTGAT---TTCATA-AGA-AAAGTTTTTTTCTCCA
* ** ** * * * *** * * * * *
4316519 -TAATGATCCCAAAAAACACA-TTCTATTTATTGGGACACATGATATTAATGCTTTGATTTCATA
175 CT-GTTTTCCTTAGAATCAAAGTT-TATACCTT---A-A-ATGAGA-CAA-ACATGGATTT-AT-
* ** * * ** * * * **
4316582 AG-AA-AAGCT-TTTTGC-TCCACT-ATT---TTCCTTAGAATCAATGTTTAT-AT-TTT-AAAT
229 -GCAATAATCTCCATT-CTTTCAATGATTGGGCACCATA-AA-C-ACG-TTATCTTCTTTGGGAT
* * * * * ** ** ** * * * *
4316636 G-AGACA-ATCG-TGGA-T--TTACGTAA-TTATCTCCATTCTT-TCAATGATTGGGCTCCATAA
288 GCACA-ATATTGATGCATTGGTTATGCAAGAAAAGT-TTTTCTTGCCACTTATT----TCCTTAA
* * * * * * * * *** *
4316693 A-C-AAGTTC--CCCTC-ATTGGGATACACAATATTGGCATTGGTTATGCAAGAA--AAGTTTTC
347 AGCAAAGTTCATTCGTCAAAT--AATACA-AA-AATGG-ATT--CT-TGTAATAATCCCTTTTTT
** ** * * * * * *
4316751 TTGCCACTTA--TTTCCTTAAAGCAAAGTTCATTCGTCAAATGAAACAAAATGGATGCATG-TAA
404 TTGTGA-TTAGGTAGCC--AAAAC-ACGCTC--TCTTC-ATTG---------GGATGCATGATAT
* ** * * * *** * *** **
4316813 TAAT-C-TCCATTTTTTGTGATTAGGAA-GC----CAAAACACGCTACCTTTATTGGGATGCATG
453 TGATGCTTTGA-TTTTCG-CA--AGAAATGCTTTTC-TTTC-CACTACC-TT-TTAAAAT-CAAA
*** * *** * * * * * ** * *
4316871 GTATTGATGATTTGATATTCG-CAAGAAAT--ACTTTTCTTTCAATAACCTTTTTAAAATCAAAG
509 GT-TTG-TCCCTT-AAAAGAGACAA-AGATGGA-TTCTC-AT-AATGA--TCTCCAAAAACACA-
* * *** * * * * * *
4316933 TT-TGCTGC-TTAAAATA-ATCAAAGATGGAT-TTTATAATGATCT
564 TTCT-ATTCATTGGGATACAT--GATATTGATGTTT-TGATTATAT
* * * *** * *
4316975 CCAA-AAACACGTTCTATTCATT---AGGA--TACAAGAT-ATTGATGTTTTGATAT-T-ATAA-
1 --AAGAAA-A-G--CTTTTC-TTGCCACGATTTTCCTTATAATT--TGGTTCG-TATGTCA-AAT
*** * * ** * * *
4317030 GAAAAGCTTTTCTTGCCATGATTT-TTCTT-ATAAT-TTAAGTTCAT-ATGTCAAGCGAAAC-AA
55 G-AAA-C-AAACATG-GATTCTTTAATCTTCAT--TCTT---TTCATGAT-T-AGGC-AACCAAA
* **** * *** * * * * ** *
4317090 ACATGGATTCT--TATATTAATCTTCATTCTTTTCATGATTAGGCA-ACCA-AA-ACACA-TTCC
108 ACA--CATTCTCCT-TATTGGGATACACGATATTAATGCTT-TG-ATTTCATAAGA-AAAGTT--
* * * ** * ** * *
4317149 GCTTATCGGGATACACGATAGTAGTGCTTTGATTCCATAAGAAAAGCATTTTTCTCCATCGTTTT
165 -TTTTTC----T-C-C---ACT-GT--TTTCCTT--AGAATCAAAG----TTTAT--A-C--CTT
* * ** * *
4317214 ACAT-AGAATCAAA-GTTTATACCTTAAATGCAATAGTCTCCATTATTTC-ATGATTGGGCACCA
206 AAATGAG-A-CAAACATGGAT---TT--ATGCAATAATCTCCATTCTTTCAATGATTGGGCACCA
*** * *
4317276 TAAACACGTTATCTAAATTGGGATGCACAATTTTGACT-CATTGGATT-TGTAAGAAAAGTTTTT
264 TAAACACGTTATCTTCTTTGGGATGCACAATATTGA-TGCATTGG-TTATGCAAGAAAAGTTTTT
* * * ** * *
4317339 TTTGCCACTTATTCCCTTAAAGCAAAGTTAATTCGTCAAATACGACAAAAAAGAATTCTTGTAAT
327 CTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTGTAAT
* * * *
4317404 AATCTCCATTATTTTGTGATTAGGTAGCCAAAACACACTCCCTTCATT-GGATGCATGATATTGA
392 AATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGA
* * *
4317468 TTGCTTTGAATTTCACAAGAAATG-TTTTC-TTCCACTACCATTTTAAAATCAAAGTTTGTTCCT
456 -TGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTTTGTCCCT
* * * * * * * * **
4317531 TAAAAAAGATAGATACGAATTCTCACAATGATCTCC-AAAACACATTATATTCATTAAGATACAT
519 TAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGATACAT
*
4317595 GATATTAATGTTTTGATTATAT
584 GATATTGATGTTTTGATTATAT
* ** * * *
4317617 AAGAAAAGCTTTTATTGCCATTATTTTCCTTATAATTTGAGTTCGTATGTCAAACGAAGCAAACT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * *
4317682 TGGATTCTTATATTAATCTTCATCCTTTTCATCATTAGGCAACCAAAACACATTTTCCTTATTGG
65 TGGATTC---T-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* ** *
4317747 GATACACGATATTAATGCTTTGATTCCATAAGAAAAGCATTTTTCTCCA---TTTTAC---G---
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAAT
* * * * *
4317803 CAATGGATT-TACGC--AAATGAGACAAACATGGATTTACGCAATATTCTACATTCTTTCAATGA
191 CAA-AGTTTATAC-CTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
* * * *
4317865 TTGGGCATCATAAACATGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGCTATGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
*
4317930 AAGCTTTTCTTGCCACTTA--T--TT----C--A--TC---CGTCAAATAATACAAAAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* * * * *
4317980 CTTGTAATAATCTCTATTTTTTTGTGATTAGGTAGCCAAAAAAAGCTCTCTTCATTAGGATGCAC
384 CTTGTAATAATCCCT-TTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCAT
* *
4318045 GATATTGATGCTTTGACTTTT-GCAAGAAATGCTTTTCTTTCCACCACCATTTCAAAATCAAAGT
448 GATATTGATGCTTTGA-TTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGT
* * * * * *
4318109 TTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAGTGATCTTCAAAAAGATAGTCTATTCACTG
511 TTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTG
* *
4318174 GTATACATGATATTAATGTTTTGATTATAT
576 GGATACATGATATTGATGTTTTGATTATAT
* * * * **
4318204 AAGAAAAGCTTTTCTTGCCATGATTTTTCTTATAATTTAAGTTCATATGTCAAGCGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTT-GGTTCGTATGTCAAATGAAACAAACA
* * * * * *
4318269 TGGATTCTTATATTAATCTTCATCCTTTTCCTTATTAGGCAACCAAAACACATTCCCCTTATCGA
65 TGGATTC---T-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * * * *
4318334 GATACACGATGTTAATGCTTTGTTTTCAGAAGAAAAG-CTTTTTCTCCA-TCGCTTTCCTTGGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* *
4318397 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACT-CAATAATCTCTACTCTTTCAATGA
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTA-TGCAATAATCTCCATTCTTTCAATGA
* *
4318461 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCTCAATATTGATGCATTGGTTATGTAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * * *
4318526 AAGTTTTTCTTACTACTTATTTCGTTAAAGCAAAGTTCATTCGTCAAATAATACGAAAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
** * * * * *
4318591 CTTGTAA-AATATCTATTTTTTGCGATTTGGTAGGCAAAACATGCTCTCTTCATTGGGATGCATG
384 CTTGTAATAATCCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATG
* * *
4318655 AT-TTGATGCTTTTATTTTCGTAAGAAATGCTTTTCTTTCCA-TGATCCTATTAAAATCAAAGTT
449 ATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACT-A-CCTTTTAAAATCAAAGTT
*
4318718 TGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTTC---AA-A-A----A--C-----
512 TGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGG
4318767 ---AC---------A---TTT--TT-TAT
577 GATACATGATATTGATGTTTTGATTATAT
* * * **
4318778 AAGAAAAGCTTTTCCTGCCACAATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTAT-AATTTGGTTCGTATGTCAAATGAAACAAACA
* *
4318843 TGGATTCTTATAATAATCTTCATTCTTTTCATGGTTAGGCAACCAAAACAAATTCTCCTTATTGG
65 TGGATTC-T-T--TAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * * * *
4318908 TAAACACGATATTAATGCTTTGATTTAATAAGAAAAGTGTTTTTCTCGACCGTTTTCCTTAGAAT
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAAT
* * * * *
4318973 CAAAG--TAAACCTTAACA-GAGGCAAACATGTATTTATGCAACATTCTCCATTCTTTCAATGAT
191 CAAAGTTTATACCTTAA-ATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTC-A--A-
4319035 TAAGCACAATAAACACATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATG
251 T--G------------ATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATG
* * * *
4319100 CATTGGTTATGCAACAGAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCGTTAGTCAAA
302 CATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAA
* ** * * ** * * *
4319165 TAAGACAAAAAAAGATTCTTATAATAATCTCCATTTTTTTGTGATTAGGCCGTCAAAACATGCTA
367 TAATACAAAAATGGATTCTTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTC
* *
4319230 TCTTCATTGGGATGCATGATATTGATGCTTTGATTTTAGCAAGAAATGCTTTTCTTTCCGCTACC
431 TCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC
* ** *
4319295 TTTTAAAATCAAAGTTTGTCGCTTAAAAGAGACAAAGATTAATTCTCGTAATGATCTCCAAAAAC
496 TTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAAC
* * *
4319360 ACATTCTATTCATTGGGATACATGATAATAATGTTTAGATTATAT
561 ACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATAT
* * **
4319405 AAGAAAAGCTTTTCCTGCCACGATTTTCCTTATAATTTGAGTTTGTATGTCAAATGAAACAAATT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * * *
4319470 TGGATTATTATATTAATCTTCATCCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTCTTGA
65 TGG---ATTCT-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* **
4319535 TATACACGATATTAATGCTTTG-------AAGAAAAGCATTTTTCTCCA-TCGTTTTCCTTAGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* * * *
4319592 TCAAAGTTTATACCTTAATTGAGACAAACATGGATTTAGGTAATAATCTACATTCTTTCAATGAT
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAT
** *
4319657 TGGGCACCATAAACTTGTTATCTTCTTTGGAATGCACAATATTGATGCATTGGTTATGCAAGAAA
255 TGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAA
* ** *
4319722 AG-TTTTCTTGCCA-TGTATTTCCTTAAAGCAACGTTTGTTTGTCAAATAATACAAAAATGGATT
320 AGTTTTTCTTGCCACT-TATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* ** * * * *
4319785 GC-TATAATAATCTCCACTTTTTTATGATTAGGCAGCCAAAACACGCTCTCTTTAATGGGATGCA
384 -CTTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCA
* * *
4319849 AGATATTGATGCATTGATTTTCGCAAGAAATGCTTTT-TGATCCACTACCATTTTAAAATCAAAG
447 TGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCT-TTCCACTACC-TTTTAAAATCAAAG
* * * *
4319913 TTTGTCTCTAAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAGAAACACATTCTATTCATT
510 TTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATT
* *
4319978 GGAATACTTGATATTGATGTTTTGATTATAT
575 GGGATACATGATATTGATGTTTTGATTATAT
* * * *
4320009 AAGAAAAACTTTTCTTGCCACGATTTTCCTTATAATTTGAATTCATATGTTAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * * * *
4320074 TTGATTCTTATAATAATCTTCATTCTTTTTATTATTAGGCAACCAAAACTCTTTCTCCTTATTGG
65 TGGATTC-T-T--TAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
4320139 GATACACGTTATTAATGCTTTGATTTCAAAAGGAAAGTTCTTTTCT---CTGTCATATTCCTTAG
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGT--T-TTCCTTAG
* * * **
4320201 AATCAGAGTTTATACCTTAACTAAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAACA
188 AATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATG
** * *
4320266 ATTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATATTGATACATTGGTTATGTAAGA
253 ATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGA
* * * *
4320331 AAAGTTTTTCTTACCATTTATTTCCTTAAAGCAAAGTCCATTCGTCAAATAAGACAAGAAA-GGA
318 AAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAA-AAATGGA
* *
4320395 TTCTTGTAATAATCCCCATTTTTTTGTGATTAGGTAGCCAAAGCACGCT-TCCTTCATTGGGATG
382 TTCTTGTAATAAT-CCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCT-CTTCATTGGGATG
* * * *
4320459 CTTGATATTGATGCTTTGATCTTAGCAAGAAATGCTTTTCTTTCAACTACCGTTTTAAAATCAAA
445 CATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAA
* * ** * * *
4320524 GTTTCTCCCTTAAAGGAGAGGAAGATGAATTCTCATAA-GAATCTCCAAAATCACATTCTATTCG
509 GTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATG-ATCTCCAAAAACACATTCTATTCA
*
4320588 TTGGGATACATGATATTGATGTTATGATTATAT
573 TTGGGATACATGATATTGATGTTTTGATTATAT
* *
4320621 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCATATGTCAAATGAAACAAACT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
*
4320686 TGGATTCTTATATTAATCTTCATCCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
65 TGGATTC---T-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * ** * *
4320751 AATACATGATATTAATGCTTTGATTCCATAAGAAAAGCATTTTTCTCCA-TCGTTTTACATAGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
*
4320815 TCAAAGTTTATACCTTAAAT--G-C--A-AT-G------G------TCTCCATTATTTCAATGAT
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGAT
* * * * * *
4320861 TGGGCACCGTAAACCCGTTATCTTCATTGGGATGCATAATATTGACT-CATTGGTTTTGTAAGAA
255 TGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGA-TGCATTGGTTATGCAAGAA
* * *
4320925 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGCCAAATAAGACGAAAAA-GAAT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATAC-AAAAATGGAT
* * * * *
4320989 TCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACACACTCCCTTCATT-GGATGTA
383 TCTTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCA
*
4321053 TGATATTGATTGCTTTGATTTTCGCAAGAAATGTTTTTCTTTCCACTACCATTTTAAAATCAAAG
447 TGATATTGA-TGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAG
* * * * * * *
4321118 TTTGTTCCTTAAAAAAGATAGATATGAATTCTCACAATGATCTCC-AAAACACATTCTATTCATT
510 TTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATT
** *
4321182 AAGATACATGATATTAATGTTTTGATTATAT
575 GGGATACATGATATTGATGTTTTGATTATAT
* * * * * *
4321213 AAGAAAAGCTTTTATTGCCATGATTTTCCTTATAATTTGAGTTTGTATGTCAAACGAAGCAAACT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * *
4321278 TGGATTCTTATATTAATCTTCATCCTTTTCATCATTAGGCAACCAAAACACATTCTCCTTACTGG
65 TGGATTC---T-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* ** * *
4321343 GATACACGATATTAATGCTTTGATTCCATAAGAAAAGCATTTTTCTCCA-TCGTTTTACATAGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* *
4321407 TCAAAGTTTATACCTTAAACGAGACAAACATGGATTTATGCAA-AATTCTACATTCTTTCAATGA
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAA-TCTCCATTCTTTCAATGA
* *
4321471 TTAGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* *
4321536 AAGCTTTTCTCGCCACTTA--T--TT----C--A--TC---CGTCAAATAATACAAAAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* *
4321586 CTTGTAATAATCTCTATTTTTTTGTGATTAGGCAGCCAAAACACGCTCTCTTCATTGGGATGCAT
384 CTTGTAATAATCCCT-TTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCAT
* * *
4321651 GATATTGATGCTTTGATTTTTGCAAGAAATGCTTTTCCTTCCACCACCATTTTAAAATCAAAGTT
448 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGTT
* * * * * *
4321716 TGTCCCTTAAAAGAGACAAAGATGGATTCTCATAGTGATCTTCGAAAAGACAGTCTATTCACTGG
512 TGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGG
* *
4321781 TATACATGATATTGATGTTTAGATTATAT
577 GATACATGATATTGATGTTTTGATTATAT
* * * * *
4321810 AGGAAAAGCATTTCTTGCCACAATATTCCTTATAATTTTAGTTCGTATGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAA-TTTGGTTCGTATGTCAAATGAAACAAACA
* * * * *
4321875 TGCATTCTTATAATAATCTTCATCCTTTTCCTTATTAGGCAACCAAAACACATTCTCCTTATCGG
65 TGGATTC-T-T--TAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
4321940 GATACACGATATTAATGCTTTGATTTCAGAAGAAAAG-CTTTTTCTCCA-TCGCTTTCCTTGGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* * *
4322003 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACT-CCATAATCTCTACTCTTTCAATGA
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTA-TGCAATAATCTCCATTCTTTCAATGA
* * * *
4322067 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCTCAATATTAACGCATTGGTTATGTAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * * *
4322132 AAGTTTTTCTTACTACATATTTCGTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
** * * * * * *
4322197 CTTGTAA-AATATCTATTTTTTGTGATTTGGTAGGCAAAACATGCTCTTTTCATTGGGATGAATG
384 CTTGTAATAATCCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATG
*
4322261 AT-TTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTCCA-TGATCCTTTTAAAATCAAAGTT
449 ATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACT-A-CCTTTTAAAATCAAAGTT
** *
4322324 TGTCTGTTAAAAGAGACAAAGATGGATTCTCCTAATGATCTCC--AAA-A-A--C-A--CA-T--
512 TGTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGG
4322377 --T-C------------------TT-TAT
577 GATACATGATATTGATGTTTTGATTATAT
* * * ** * *
4322384 AAGAAAAGCTTTTCCTGCCACAATTTTCCTTATAATTTGAGTTCATAGGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTAT-AATTTGGTTCGTATGTCAAATGAAACAAACA
* * *
4322449 TGGATTCTTATAATAATCTACATTCTTTTCATGGTTAGGCAACCAAAACAAATTCTCCTTATTGG
65 TGGATTC-T-T--TAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
4322514 TATACACGATATTAATGCTTTTATTTAATAAGAAAAGTTTTTTTCTCGA-TCGTTTTCCTTAGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* * * *
4322578 TCAAAGTTTATACCTT-AATAGAGACAAACATGTATTTACGTAATATTCTCCATTCTTTCAATGA
190 TCAAAGTTTATACCTTAAAT-GAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
* * * *
4322642 TTGAGCACCATAAACACATTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAACAT
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * **
4322707 AAGTTTTTCTTGCCACTTATTTCCTTAAAACAAAGTTCATTCGTCAAATAAGACAAAAAAAGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* * * *
4322772 CTTGTAATAATCTCCATTTTTTTGTGATTAGGTCGCCAAAACATGCTATCTTCATTGGGATGCAT
384 CTTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCAT
* * * *
4322837 GATATTGATGCTTTGATTTTAGCAAGAAATGCTTTTCTTTTCGCTACATTTTAAAATCAAAGTTT
448 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTAAAATCAAAGTTT
* ** *
4322902 GTCACTTAAAAGAGACAAAGATAAATTTTCATAATGATCTCCAAAAACACATTCTATTCATTGGG
513 GTCCCTTAAAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGG
* * *
4322967 ATACATGATAATAACGTTTTGATTATAT
578 ATACATGATATTGATGTTTTGATTATAT
* * * * * **
4322995 AAGAGAACCTTTTCCTGCCACGATTTTCTTTATAATTTGAGTTTGTATGTCAAATGAAACAAATT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* *
4323060 TGGATTATTATATTAATCTTCA-TCATTTTCATGATTAGGCAACCAAAACACATTCTCCTTCTTG
65 TGG---ATTCT-TTAATCTTCATTC-TTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTG
** * **
4323124 ATATACATGATATTAATGCTTTG-------AAGAAAAGCATTTTTCTCCA-TCGTTTTCCTTAGA
125 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGA
* * * *
4323181 ATCAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGTAATAATCTCCATTATTTCAATGA
189 ATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGA
** * *
4323246 TTGGGCACCATAAACTTGTTATCATCTTTGGGATGCACAATATTGATGCATTGGTTAAGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* ** *
4323311 AAG-TTTTCTTCCCA-TGTATTTCCTTAAAGCAAAGTTTGTTTGTCAAATAATACAAAAATGGAT
319 AAGTTTTTCTTGCCACT-TATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGAT
* *
4323374 TGC--GATAATAATCTCCTTTTTTTTATGATTAGGTAGCCAAAACACGCTCTCTTCAATGGGATG
383 T-CTTG-TAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATG
* * * *
4323437 CAAGATATTGATGCTTTGATATTCACAAGAAATGCTTTT-TGATCCACTACCATTTTAAAATCAA
445 CATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCT-TTCCACTACC-TTTTAAAATCAA
* * * * *
4323501 AGTTTGTCTC-TAAAAGGATACAAAGATGAATTCTCGTAATGATCTCAAAAAACACATTCTATTC
508 AGTTTGTCCCTTAAAA-GAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTC
*
4323565 ATTGGGATACATGATATAGATGTTTTGATTATAT
572 ATTGGGATACATGATATTGATGTTTTGATTATAT
* *
4323599 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTCAAATGAAACAAACT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * *
4323664 TGGATTCTTATATTAATCTTTATCCTTTTCATGATTAGGCAACCAAAACACATTTTCCTTATTGG
65 TGGATTC---T-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * ** * * *
4323729 AATACACGATATTAATGCTTTGATTCCATAAGAAAAGCATTTTTCTCCA-TCATTTTACATAGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* * * *
4323793 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACT-CAATATTCTGCTTTCTTTTAATGA
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTA-TGCAATAATCTCCATTCTTTCAATGA
* * * * *
4323857 TTGAGCACCATAAACATGTTATCTTCTTTAGGATGCACAATATTGATGCATTAGCTATGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * ** *
4323922 AAGATTTTCTTGCCACTTATTTCCTTAAAACAAAGTTTGTTTGTCAAATAATACAAAAATGGATT
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATT
* * * * * *
4323987 GTTGTAAAAATCTCC-ATTTTTTGTGATTAGGCAACCAAAACACGCTATCTTCAATT-GGATGCA
384 CTTGTAATAATC-CCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTC-ATTGGGATGCA
* * * * * **
4324050 AGATACTGATGCTTTGATTTTTGCAGGAAATGCTTTCCGATCCACTACCATTTTAAAATCAAAGT
447 TGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC-TTTTAAAATCAAAGT
* * * *
4324115 TTGT-CTTTAAAAAGAGACAATA-ATGAATTCTAATAATTATCTCCAAAAACACATTCTATTCAT
511 TTGTCCCTT-AAAAGAGACAA-AGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCAT
*
4324178 TGGGACACATGATATTGATGTTTTGATTATAT
574 TGGGATACATGATATTGATGTTTTGATTATAT
* * ** * **
4324210 AAGAAAAACTTTTCCTGCCACGATTTTCCTTATAATAGGCGTTCGTATGTCAAATAAAACAAATT
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTG-GTTCGTATGTCAAATGAAACAAACA
* * * * * *
4324275 TGGATTATTATATTAATATTCATCCTTTTCATGATTAGGCAACCAGAACACATTCTCCTTCTTGC
65 TGG---ATTCT-TTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* **
4324340 GATGCACGATATTAATGCTTTGATTTCATAAGAAAAGCATTTTTCTCCA-TCGTTTTCCTTAGAA
126 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACT-GTTTTCCTTAGAA
* * * * *
4324404 TCAAAGTTTGTACCTTAACTAAGGCAAACATGGATTTATGCAATAATCTCCATTCTTTCTA-GAA
190 TCAAAGTTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATG-A
** * *
4324468 TTGGGCACCATAAACTTGTTATCTTCTTTGGGATGCACAATAGTGATGCATTGATTATGCAAGAA
254 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAA
* * * * *
4324533 AAGTTTTTCCTGCCATTTAATTCCTTAAAGCAAAGTTCGTAT-GCCAAATGAA-AC-AAAATGGA
319 AAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCAT-TCGTCAAAT-AATACAAAAATGGA
*
4324595 TTCTTATAATAATC
382 TTCTTGTAATAATC
4324609 TTCATTCCTT
Statistics
Matches: 11391, Mismatches: 1692, Indels: 1298
0.79 0.12 0.09
Matches are distributed among these distances:
572 4 0.00
573 40 0.00
574 290 0.03
575 229 0.02
576 4 0.00
577 104 0.01
578 36 0.00
579 5 0.00
580 2 0.00
581 10 0.00
582 176 0.02
583 102 0.01
584 286 0.03
585 36 0.00
586 71 0.01
587 192 0.02
588 2 0.00
589 11 0.00
590 5 0.00
591 128 0.01
592 268 0.02
593 366 0.03
594 46 0.00
595 20 0.00
596 420 0.04
597 202 0.02
598 29 0.00
599 92 0.01
600 383 0.03
601 83 0.01
602 40 0.00
603 354 0.03
604 932 0.08
605 221 0.02
606 166 0.01
607 960 0.08
608 460 0.04
609 570 0.05
610 297 0.03
611 1165 0.10
612 559 0.05
613 347 0.03
614 195 0.02
615 30 0.00
616 92 0.01
617 200 0.02
618 185 0.02
619 18 0.00
620 44 0.00
621 22 0.00
622 74 0.01
623 17 0.00
624 13 0.00
625 17 0.00
626 12 0.00
627 149 0.01
628 10 0.00
629 20 0.00
630 17 0.00
631 6 0.00
632 2 0.00
636 8 0.00
637 17 0.00
638 39 0.00
639 27 0.00
640 33 0.00
641 34 0.00
642 45 0.00
643 34 0.00
644 16 0.00
645 4 0.00
646 23 0.00
647 27 0.00
648 25 0.00
649 15 0.00
650 14 0.00
651 20 0.00
652 18 0.00
653 5 0.00
654 4 0.00
655 8 0.00
657 4 0.00
658 1 0.00
659 9 0.00
660 6 0.00
661 13 0.00
662 12 0.00
663 9 0.00
664 12 0.00
665 15 0.00
666 17 0.00
667 8 0.00
668 7 0.00
669 11 0.00
670 13 0.00
671 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (605 bp):
AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGGTTCGTATGTCAAATGAAACAAACAT
GGATTCTTTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATAC
ACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTGTTTTCCTTAGAATCAAAG
TTTATACCTTAAATGAGACAAACATGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCA
CCATAAACACGTTATCTTCTTTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGTTTT
TCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAATACAAAAATGGATTCTTGTAA
TAATCCCTTTTTTTTGTGATTAGGTAGCCAAAACACGCTCTCTTCATTGGGATGCATGATATTGA
TGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTAAAATCAAAGTTTGTCCCTTA
AAAGAGACAAAGATGGATTCTCATAATGATCTCCAAAAACACATTCTATTCATTGGGATACATGA
TATTGATGTTTTGATTATAT
Found at i:4324714 original size:157 final size:155
Alignment explanation
Indices: 4324250--4324727 Score: 401
Period size: 159 Copynumber: 3.0 Consensus size: 155
4324240 TATAATAGGC
* ** * *
4324250 GTTCGTATGTCAAATAAAACAAATTTGGATTATTATATTAATATTCA-TCCTTTTCATGATTAGG
1 GTTCGTATGCCAAAT-AAACAAACATGGATT-TTATAATAATCTTCATTCC-TTTCATGATTAGG
* * * *
4324314 CAACCAGAACACATTCTCCTTCTTGCGATGCACGATATTAATGCTTTGATTTCATAAGAAAAGCA
63 C-ACCAAAACACATTCTCCTTATTG-GATGCACGATATTAATGATTTGATTTCATAAGAAAAGCT
4324379 TTTTTCTCCATCGTTTTCCTTAGAATCAAA
126 TTTTTCTCCATCGTTTTCCTTAGAATCAAA
* * * *
4324409 GTTTGTA--CCTTAACTAAGGCAAACATGGA-TTTATGCAATAATCTCCATT-CTTTC-TAGAAT
1 GTTCGTATGCC--AAATAA-ACAAACATGGATTTTAT--AATAATCTTCATTCCTTTCAT-G-AT
* *** * * * * *
4324469 TGGGCACCATAAACTTGTTATCTTCTT-TGGGATGCACAATAGTGATGCA-TTGA-TT-ATGCAA
59 TAGGCACCA-AAAC-ACAT-TCTCCTTATTGGATGCACGATATTAATG-ATTTGATTTCAT--AA
* *
4324530 GAAAAG-TTTTTCCTGCCAT--TTAATTCCTTA-AAGCAAA
118 GAAAAGCTTTTTTCT-CCATCGTT--TTCCTTAGAATCAAA
4324567 GTTCGTATGCCAAATGAAACAAA-ATGGATTCTTATAATAATCTTCATTCCTTTCATGATTAGGC
1 GTTCGTATGCCAAAT-AAACAAACATGGATT-TTATAATAATCTTCATTCCTTTCATGATTAGGC
*
4324631 AGCCAAAACACATTCTCCTTATTAGGATACACGATATTAATGATTTGATTTCATAAGAAAAGCTT
64 A-CCAAAACACATTCTCCTTATT-GGATGCACGATATTAATGATTTGATTTCATAAGAAAAGCTT
4324696 TTTTCTCCATCGTTTTCCTTAGAATCAAA
127 TTTTCTCCATCGTTTTCCTTAGAATCAAA
4324725 GTT
1 GTT
4324728 TATACCTTAA
Statistics
Matches: 246, Mismatches: 39, Indels: 69
0.69 0.11 0.19
Matches are distributed among these distances:
155 6 0.02
156 3 0.01
157 75 0.30
158 67 0.27
159 83 0.34
160 6 0.02
161 6 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (155 bp):
GTTCGTATGCCAAATAAACAAACATGGATTTTATAATAATCTTCATTCCTTTCATGATTAGGCAC
CAAAACACATTCTCCTTATTGGATGCACGATATTAATGATTTGATTTCATAAGAAAAGCTTTTTT
CTCCATCGTTTTCCTTAGAATCAAA
Found at i:4325793 original size:529 final size:528
Alignment explanation
Indices: 4324795--4325842 Score: 1557
Period size: 529 Copynumber: 2.0 Consensus size: 528
4324785 TTATTTTTGC
*
4324795 AAGAAATGATTTTCTTTCCACTATCTTTTTAAAATCAAAGTTTGTCCCCTGAAAGAGACAAAGAC
1 AAGAAATGATTTTCTTTCCACTATCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGAC
* *
4324860 GAATTCTCATAATGATCTCCAAAAACACATTATATACTTTGGGATACATGATATTGATGTTTTGA
66 GAATTCTCATAACGATCTCCAAAAACACATTATATACCTTGGGATACATGATATTGATGTTTTGA
* * *
4324925 TTATATAAGAAAAGCTTGTCTTGCCATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAA
131 TTATATAACAAAAGCTTGTCCTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAA
* * * *
4324990 GAAACAAAGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTACT
196 CAAACAAAGATTCTTATAACAAGCTTCAATCTTTTCATGATTAGGCAACCAAAACACATTCTACT
* **
4325055 TATTGGGATACACGAAATTAAAGATTTGATTTCATAAGAAAAGCTTTTTTCTCCTCATTTTTCTT
261 TATTGGGATACACGAAATTAAAGATTTGATTTCATAAGAAAAGCTTTTTTCTCCCCATTTTTCCC
* * * * * * *
4325120 TTGAATCAACGTTTATACCTTAAATGAGGCAACCTTGTATTTACGCAATAATCTCTATTCTTTCA
326 TAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCA
*
4325185 ACGATTGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGACACATCGGTTATGCAA
391 ACGATTGGCACCATAAACACGTTATCTTCATTAGGACGCACAATATTGACACATCGGTTATGCAA
4325250 ATAAAGTTTTTCTTGCCA-TTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAATAAA
456 ATAAAGTTTTTCTTGCCACTTT-TTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAA-AAA
4325314 GTTCATTAGT
519 GTTCATTAGT
* * * *
4325324 AAGAAATGCTTTTCTTTCCATTA-CATTTTTAAAATCAAAGTTTGTCCCTTAAAAGATACAAAGA
1 AAGAAATGATTTTCTTTCCACTATC-TTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGA
* * *
4325388 TGAATTCTCATAACGATCTCCAAAAACACATTCTATTCCTTGGGATACATGATATTGATGTTTTG
65 CGAATTCTCATAACGATCTCCAAAAACACATTATATACCTTGGGATACATGATATTGATGTTTTG
* * *
4325453 ATTATATAACAAAAGCTTTTCCTGCCACGATTTTTCTTATAATTTGAGTTCGTATGTCAGATGAA
130 ATTATATAACAAAAGCTTGTCCTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAA
** * *
4325518 ACAAACATGGATTCTTATAACAAGCTTCAATCTTTTCATGATTAGGTAGCCAAAACACATTCT-C
195 ACAAACAAAGATTCTTATAACAAGCTTCAATCTTTTCATGATTAGGCAACCAAAACACATTCTAC
* * * *
4325582 TTCATTGGGATACACGATA-TAACGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCA-TTTT
260 TT-ATTGGGATACACGAAATTAAAGATTTGATTTCATAAGAAAAGCTTTTTTCTCC-CCATTTTT
* * *
4325645 CCCTAGGATCAAAGTTTATACCTTAACTGAGACAAACATGGATTTATGCAATAATCTCCATTCTT
323 CCCTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAATCTCCATTCTT
* * * * *
4325710 TCAATGATTGGGCACCATAAACATGTTATCTTCTTTAGGACGCACAATATTGACGCATTGGTTAT
388 TCAACGATT-GGCACCATAAACACGTTATCTTCATTAGGACGCACAATATTGACACATCGGTTAT
* * *
4325775 GCAAGTAAAGTTTTTCTTGCTACTTTTTTCGTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAA
452 GCAAATAAAGTTTTTCTTGCCACTTTTTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAA
4325840 AAG
517 AAG
4325843 GTTTCTTGTA
Statistics
Matches: 464, Mismatches: 50, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
528 106 0.23
529 355 0.77
530 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (528 bp):
AAGAAATGATTTTCTTTCCACTATCTTTTTAAAATCAAAGTTTGTCCCCTAAAAGAGACAAAGAC
GAATTCTCATAACGATCTCCAAAAACACATTATATACCTTGGGATACATGATATTGATGTTTTGA
TTATATAACAAAAGCTTGTCCTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAA
CAAACAAAGATTCTTATAACAAGCTTCAATCTTTTCATGATTAGGCAACCAAAACACATTCTACT
TATTGGGATACACGAAATTAAAGATTTGATTTCATAAGAAAAGCTTTTTTCTCCCCATTTTTCCC
TAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACGCAATAATCTCCATTCTTTCA
ACGATTGGCACCATAAACACGTTATCTTCATTAGGACGCACAATATTGACACATCGGTTATGCAA
ATAAAGTTTTTCTTGCCACTTTTTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAAAGT
TCATTAGT
Found at i:4327454 original size:597 final size:592
Alignment explanation
Indices: 4326187--4327774 Score: 1915
Period size: 610 Copynumber: 2.6 Consensus size: 592
4326177 AGGAAAGTTT
* * ** * * * *
4326187 TTTTTCTCCATCATTTTCCTTAGAATTGAAGTTTACACCTTAACTGAGACAAACATGGAATTACG
1 TTTTTCTCCATCGTTTTACTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACT
* * * *** *
4326252 CAATAATCTACATTGTTTCAATGATTGGGCACCATAAATTTGTTATCTTCTTTGGGATGCACAAT
66 CAATAATCTCCATTCTTTCAATGATTGAGCACCATAAACACGTTATCCTCTTTGGGATGCACAAT
* * *
4326317 ATTGATGCATTGGTTATGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTGTT
131 ATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTA--T--TT----C--A--TCG--
* * *
4326382 TGCCAAATAATAGAAAAATGGATTGTTGTAATAATCTCTATTTTTTTGTGATTAGGCAACCAAAA
182 T--CAAATAATACAAAAATGGATTATTGTAATAATCTCCA-TTTTTTGTGATTAGGCAACCAAAA
** *
4326447 CACGCTCTCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
244 CACGCTCTCTTCAATGGGATGCAAGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTC
* * * *
4326512 CACTATC-TTTATAAAATCAAAGTTTGACCCTTAAAAGAGACAAAGATGAATTCTCATAATGATC
309 CACTACCATTT-TAAAATCAAAGTTTGTCCCTTAAAAGAGAC-AAGATGGATTCTCACAATGATC
* * *
4326576 TCCAAAAACACATTCTATTCATTGGGATATATGATGTTGATGTTTTGATTATATAAGAAAAGCTT
372 TCCAAAAACACATTCTATTCATTGGGATACATGATATTAATGTTTTGATTATATAAGAAAAGCTT
* * *
4326641 TTCCTACCACGATTTTCCTTATAATTTGACTTCGTATGTCAAATGAAACAAACTTAGATTCTTGT
437 TTACTACCACGATTTTCCTTATAATTTGACTTCGTATGTCAAAAGAAACAAACTTAGATTCTTAT
*
4326706 ATTAATCTTCATCTTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACATGATA
502 ATTAATCTTCATCTTTTTCACGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACA--ATA
* *
4326771 TTAATGCTTTGATTCCATAAGAAAAGCA
565 GTAATGATTTGATTCCATAAGAAAAGCA
* * *
4326799 TTTTTCTCCATCGTTTAAC-TAGAATCAAAGATTATACATTAAATGAGACAAA-ATGGATTTACT
1 TTTTTCTCCATCGTTTTACTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACT
* *
4326862 CAATATTCTCCATTCTTTCAAAGATTGAGCACCATAAACACGTTATCCTCTTTGGGATGCACAAT
66 CAATAATCTCCATTCTTTCAATGATTGAGCACCATAAACACGTTATCCTCTTTGGGATGCACAAT
* *
4326927 ATTGACGCATTGGTTATACGAGAAAAGCTTTTCTTGCCACTTATTTCATCCGTCAAATAATACAA
131 ATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCAT-CGTCAAATAATACAA
* *
4326992 AAATGGATTCTTGTAATAATTATCTCCATTTTTTGTGATTAGGCAACCAAAACTCGCTCTCTTCA
195 AAATGGATTATTGTAAT-A--ATCTCCATTTTTTGTGATTAGGCAACCAAAACACGCTCTCTTCA
* *
4327057 ATGGGATGCAAGATATTGATGCTTTCATTTTAGCAAGAAATGCTTTTCTTTCCACTACCATTTTA
257 ATGGGATGCAAGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCATTTTA
*
4327122 AAATCAAAGTTTGTCCCTCAAAA-AGAC-AGATGGATTCTCACAATGATCTCC-AAAACACATTC
322 AAATCAAAGTTTGTCCCTTAAAAGAGACAAGATGGATTCTCACAATGATCTCCAAAAACACATTC
* *
4327184 TATTCATTGGGATACATGATATTAATGTTTTGATTTATAATATAAGAAAAGCTTTTATTGCCACG
387 TATTCATTGGGATACATGATATTAATGTTTTGA--T-T-ATATAAGAAAAGCTTTTACTACCACG
* *
4327249 ATTTTCCTTATAATTTGAGTTCGTATGTCAAAAGAAACAAAACTTGGATTCTTATATTAATCTTC
448 ATTTTCCTTATAATTTGACTTCGTATGTCAAAAGAAAC-AAACTTAGATTCTTATATTAATCTTC
* *
4327314 ATAC-TTTTCACGGTTAGGCAACCAAAACACATTCTCCTTATTGGGATAC-ATAGTAATGATTTG
512 AT-CTTTTTCACGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACAATAGTAATGATTTG
4327377 ATTCCATAAGAAAAGCA
576 ATTCCATAAGAAAAGCA
* *
4327394 TTTTTCTCCATTGTTTTACTTAGAATCAAAGTTTATACCTTAAATGAGAAAAACATGGATTTACG
1 TTTTTCTCCATCGTTTTACTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTAC-
* *
4327459 T-AATAATCTCTATTCTTTCAATGATT-AGGCACCTTAAACACGTTGGGCACTATAAACATGTTA
65 TCAATAATCTCCATTCTTTCAATGATTGA-GCACCATAAACACG-T------TAT---C------
* * * * * ** *
4327522 TCTTCTTTGAGATGCACAATATTGGCACATTGATTATGCAAGAAAAGGTTTTACTTGCTGCTTAA
113 -C-TCTTTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTT-CTTGCCACTTAT
** *
4327587 TTCATC--CATTTAATACAAAAATGGATTATTGTAATAATCTCCATTTTTTGTGATTAGGCAGCC
175 TTCATCGTCAAATAATACAAAAATGGATTATTGTAATAATCTCCATTTTTTGTGATTAGGCAACC
* * *
4327650 AAAACACACTCTCTTCACTAGGATGCAAGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTC
240 AAAACACGCTCTCTTCAATGGGATGCAAGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTC
* * *
4327715 -TTCCTACTACCATTTTAAAATCAAAGCTCGTCCCTTAAAATAGACAAAGATGGATTCTCA
305 TTTCC-ACTACCATTTTAAAATCAAAGTTTGTCCCTTAAAAGAGAC-AAGATGGATTCTCA
4327775 TAGTTGATGA
Statistics
Matches: 852, Mismatches: 86, Indels: 75
0.84 0.08 0.07
Matches are distributed among these distances:
593 41 0.05
594 22 0.03
595 74 0.09
596 37 0.04
597 217 0.25
598 80 0.09
599 2 0.00
600 1 0.00
602 1 0.00
604 3 0.00
606 2 0.00
607 1 0.00
608 1 0.00
609 4 0.00
610 221 0.26
611 31 0.04
612 17 0.02
613 39 0.05
614 1 0.00
615 43 0.05
616 14 0.02
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (592 bp):
TTTTTCTCCATCGTTTTACTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGGATTTACT
CAATAATCTCCATTCTTTCAATGATTGAGCACCATAAACACGTTATCCTCTTTGGGATGCACAAT
ATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACTTATTTCATCGTCAAATAATACAAA
AATGGATTATTGTAATAATCTCCATTTTTTGTGATTAGGCAACCAAAACACGCTCTCTTCAATGG
GATGCAAGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCATTTTAAAAT
CAAAGTTTGTCCCTTAAAAGAGACAAGATGGATTCTCACAATGATCTCCAAAAACACATTCTATT
CATTGGGATACATGATATTAATGTTTTGATTATATAAGAAAAGCTTTTACTACCACGATTTTCCT
TATAATTTGACTTCGTATGTCAAAAGAAACAAACTTAGATTCTTATATTAATCTTCATCTTTTTC
ACGATTAGGCAACCAAAACACATTCTCCTTATTAGGATACAATAGTAATGATTTGATTCCATAAG
AAAAGCA
Done.