Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 29 of 47
Found at i:4723213 original size:159 final size:156
Alignment explanation
Indices: 4723031--4723893 Score: 488
Period size: 159 Copynumber: 5.4 Consensus size: 156
4723021 CAAAGAAGAT
* * * *
4723031 AACGTGCTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCGACGTTTGTCTCA
1 AACGTG-TTTTGGTGCCTAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTCA
* * * * *
4723096 GTTAAGGTATACATTTTGATTCTAAGGAAAACGGAGGAGAAAAAAACTTTTCTTATGAAATCAAA
65 TTTAAGGTATAAACTCTGATTCTAAGGAAAACGG-GCAGAAAAAAACTTTTCTTATGAAATCAAA
*
4723161 GCAATAATATTGTGTATCACAATAAGGAG
129 GCAGTAATATTGTGTATC-CAATAAGGAG
* * ** *
4723190 AACGTGTTTTGGATGCCTAATCA-TGAAAAGAATGAAGATTTTTATAAAAATCCATGTTTGT-TC
1 AACGTGTTTTGG-TGCCTAATCATTG-AAAGAATGGAGATTATTGCATAAATCCATGTTTGTCT-
** ** ** * * * *
4723253 CATTTAACTTACGAACTCAAAATCTAATGAAAATCGTGGCA-AGAAAAGCTTTTC-T-TGCATAA
63 CATTTAAGGTATAAACTCTGATTCTAAGGAAAA-CG-GGCAGAAAAAAACTTTTCTTATG-A-AA
* * * * *
4723315 CCAACGC-GTCAATATTGTGCATCCTGATGAA-GAT
124 TCAAAGCAGT-AATATTGTGTATCC-AAT-AAGGAG
* * * ** * * * *
4723349 AATGAGTTTATGGTGCCCAATCATTGAAAGAACAGAGATTATAGCGTAAATCCATATTTGTCTTA
1 AACGTGTTT-TGGTGCCTAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTCA
* * * * * * *
4723414 GTTAAGGTATAAACTTTGATTCTAAGGAAAATGGTGGAGAAAAATACTTTTCTTGTTAAATCAAA
65 TTTAAGGTATAAACTCTGATTCTAAGGAAAACGG-GCAGAAAAAAACTTTTCTTATGAAATCAAA
* * * *
4723479 GCATTACA-ATCGGGTATCACAACAAGGAG
129 GCAGTA-ATATTGTGTATC-CAATAAGGAG
* *
4723508 AACATGTTTTGGATGCCTAATCA-TGAAAAAAAT-GACGATTATT--ATAAGAATCCAT-TATTG
1 AACGTGTTTTGG-TGCCTAATCATTG-AAAGAATGGA-GATTATTGCAT-A-AATCCATGT-TTG
* ** * ** * * * * * * *
4723568 TTTCATTTAACATACAAACTCAAAATATAAGGGAAATCGCGGTA-AGAAAAGCTTTTC--CTGCA
60 TCTCATTTAAGGTATAAACTCTGATTCTAA-GGAAAACG-GGCAGAAAAAAACTTTTCTTATG-A
* * * * * *
4723630 TAACCAATGC-GTCAATATTATGCATCCCA-AAGAAG
122 -AATCAAAGCAGT-AATATTGTGTATCCAATAAGGAG
*
4723665 ATGACGTGTTTATGGTGCCTAATCATTGAAAGAATGGATATTATTGCATAAATCCATGTTTGTCT
1 A--ACGTGTTT-TGGTGCCTAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCT
* * * * *
4723730 TATTTAATGTATAAACTATGATTCCAAGGAAAACAGTGCAGAAAAAAACTTTTCTTATGAAATCA
63 CATTTAAGGTATAAACTCTGATTCTAAGGAAAAC-GGGCAGAAAAAAACTTTTCTTATGAAATCA
* * * *
4723795 AAGCATTAATATCGAGTATCCCTATAAGGAG
127 AAGCAGTAATATTGTGTAT-CCAATAAGGAG
* * * * *
4723826 AACGTGTTTTGATTGCTTAATCATGGAAAGAATGAAGATTATT--ATACGAATCCATGTTTGTTT
1 AACGTGTTTTG-GTGCCTAATCATTGAAAGAATGGAGATTATTGCATA--AATCCATGTTTGTCT
4723889 CATTT
63 CATTT
4723894 GACAAATGAG
Statistics
Matches: 512, Mismatches: 141, Indels: 102
0.68 0.19 0.14
Matches are distributed among these distances:
157 14 0.03
158 41 0.08
159 405 0.79
160 39 0.08
161 13 0.03
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (156 bp):
AACGTGTTTTGGTGCCTAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTCAT
TTAAGGTATAAACTCTGATTCTAAGGAAAACGGGCAGAAAAAAACTTTTCTTATGAAATCAAAGC
AGTAATATTGTGTATCCAATAAGGAG
Found at i:4723617 original size:318 final size:318
Alignment explanation
Indices: 4722972--4726386 Score: 1628
Period size: 318 Copynumber: 11.1 Consensus size: 318
4722962 GAAAATAAGT
* * *
4722972 GGCAAGAAAAACTTTTCTTGCATAACCTATGCATCAATATTGTGCATCCCAAAGAAGATAACGTG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
* * * *
4723037 CTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCGACGTTTGTCTCAGTTAAG
66 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAAG
* * * *
4723102 GTATACATTTTGATTCTAAGGAAAACGGAGGAGAAAAAAACTTTTCTTATGAAATCAAAGCAATA
131 GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
* * *
4723167 ATATTGTGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATTTT
196 ATATCGAGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATTAT
* * * * * * *
4723232 TATAAAAATCCATGTTTGTTCCATTTAACTTACGAACTCAAAATCTAATGAAAATCGT
261 TATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
* ** * * *
4723290 GGCAAGAAAAGCTTTTCTTGCATAACCAACGCGTCAATATTGTGCATCCTGATGAAGATAATGAG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
** * * *
4723355 TTTATGGTGCCCAATCATTGAAAGAACAGAGATTATAGCGTAAATCCATATTTGTCTTAGTTAAG
66 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAAG
* * * *
4723420 GTATAAACTTTGATTCTAAGGAAAATGGTGGAGAAAAATACTTTTCTTGTTAAATCAAAGCATTA
131 GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
* * * * *
4723485 CA-ATCGGGTATCACAACAAGGAGAACATGTTTTGGATGCCTAATCATGAAAAAAATGACGATTA
196 -ATATCGAGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATTA
*
4723549 TTATAAGAATCCAT-TATTGTTTCATTTAACATACAAACTCAAAATATAAGGGAAATCGC
260 TTATAAGAATCCATGT-TTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
* * * *
4723608 GGTAAGAAAAGCTTTTCCTGCATAACCAATGCGTCAATATTATGCATCCCAAAGAAGATGACGTG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
* * * *
4723673 TTTATGGTGCCTAATCATTGAAAGAATGGATATTATTGCATAAATCCATGTTTGTCTTATTTAAT
66 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAAG
* * * *
4723738 GTATAAACTATGATTCCAAGGAAAACAGTGCAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
131 GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
* * * *
4723803 ATATCGAGTATCCCTATAAGGAGAACGTGTTTT-GATTGCTTAATCATGGAAAGAATGAAGATTA
196 ATATCGAGTATCACAATAAGGAGAACGTGTTTTGGA-TGCCTAATCATGAAAAGAATGAAGATTA
* * * ** * * * **
4723867 TTATACGAATCCATGTTTGTTTCATTTGACAAATGAGCTCAAATTACAAGGAAAATCAT
260 TTATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
* ** * **** * ** ** *
4723926 GGCAAGGAAAGCTTTTCTTATATAATCAAAATATTAATATCATATATCCCAAA-AA-ATAGATTG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATA-A-CG
* * * * ** *
4723989 TGTTTTTGGAG----ATC-TT--TATAA--GA-ATTCGT-C-T---T---TG--TCTCTT--TTA
64 TGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTA
* * * *** * * * *
4724032 AGGGAGAAACTTTGATTTTAA--AAAGATAATGGA-AAGAGAAGCATTTCTTGCA-AAAATCAAA
129 AGGTATAAACTTTGATTCTAAGGAAA-ACGGTGGAGAA-AAAAACTTTTCTT--ATGAAATCAAA
* * * * * * *
4724093 GTATCAATATC-A-TCCATCTCAATGAA-GAGAGCGTGTTTTGGCTGCCTAATCA-CAAAATAAT
190 GCATTAATATCGAGT--ATCACAAT-AAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAAT
* * * * *** * * **** * *
4724154 GGAGATTATTACAAGAAT-CTTTTTTAACTAATTT-GC-TGA-ATGAACT-TTGCTTTAACG-AA
252 GAAGATTATTATAAGAATCCATGTTTGTTTCATTTAACAT-ACA--AACTCAAAATATAAGGAAA
* *
4724213 ATAAGT
314 AT-CGC
* * * * * * *
4724219 GGCAAGAAAAACTTTACTTGCATAACCAATGCATCAATATTGTGCATCCTAAAGAAGACAGCATG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
* * *
4724284 TTTATGGTGCGCAATCATTGAAAGAATGGAGATTATTGCGTAAATCCATGTTTGTCTCAGTTAAG
66 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAAG
4724349 GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
131 GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
* * * * * * * * *
4724414 ATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAACCATTAAAAGAAGGATGATTAA
196 ATATCGAGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATTAT
* * * * * * *
4724479 TATATGAACCCTTGTTTGTTTCATTTGACACACAAACTCAAATTATAAGGAAAATC-T
261 TATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
** * ** * ** ** * * * * *
4724536 GGCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATATATCCTAATGAATAGAATGTG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
* * * * * *
4724601 TTT-T--TG----------G--AG-AT---CACTA-CG-A-CAATCCATCTTTGTCTCT-TTTAA
66 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCT-TAGTTAA
* * *** * * *
4724643 GAG-ACAAACTTTGATTTTAA--AAAGGTAGTGGA-AAGAAAAGCATTTCTTGCA-AAAATCAAA
130 G-GTATAAACTTTGATTCTAAGGAAA-ACGGTGGAGAA-AAAAACTTTTCTT--ATGAAATCAAA
* * * ** * * *
4724703 GCATCAATATC-ATGCATC-C--TAAGGAAGAAAGCATGTTTCAGTTGCCTAATCA-CAAAAAAA
190 GCATTAATATCGA-GTATCACAATAAGG-AG-AA-CGTGTTTTGGATGCCTAATCATGAAAAGAA
* * * * * * * *** *
4724763 TGGAGATTATTACAAGAATCTAT-TTCTATCTCATTTGACGA-ACGAA--CATTGCTTTAAGG-A
251 TGAAGATTATTATAAGAATCCATGTT-TGTTTCATTTAAC-ATACAAACTCA-AAATATAAGGAA
* *
4724823 AATAAGT
313 AAT-CGC
* ** * *
4724830 GGTAA-AAAGAATTTTTTTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATGACGT
1 GGCAAGAAA-AGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGT
* * *
4724894 GTTTATGGTGCCTAATCATTGAAAGAATGGATATTATTGCATAAATCCATGTTTGTCTTATTTAA
65 GTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAA
* * * * *
4724959 TGTATAAACTATGATTCCAAGGAAAACAGTGCAGAAAAAAACTTTTCTTATGAAATCAAAGCATT
130 GGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATT
* * * * *
4725024 AATATCGGGTATCCCTATAAGGAGAACGTGTTTT-GATTGCTTAATCATGGAAAGAATGAAGATT
195 AATATCGAGTATCACAATAAGGAGAACGTGTTTTGGA-TGCCTAATCATGAAAAGAATGAAGATT
* * ** * * * **
4725088 ATTATAAGAATCCATGTTTGTTTCATTTGACAAATGAGCTCAAATTACAAGGAAAATCAT
259 ATTATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
* ** * **** * ** ** *
4725148 GGCAAGGAAAGCTTTTCTTATATAATCAAAATATTAATATCATATATCCCAAA-AA-ATAGATTG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATA-A-CG
* * * * * ** *
4725211 CGTTTTTGGAG----ATC-TT--TATAA--GA-ATTCGT-C-T---T---TG--TCTCTT--TTA
64 TGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTA
* * * *** * * * *
4725254 AGGGAGAAACTTTGATTTTAA--AAAGATAATGGA-AAGAGAAGCATTTCTTGCA-AAAATCAAA
129 AGGTATAAACTTTGATTCTAAGGAAA-ACGGTGGAGAA-AAAAACTTTTCTT--ATGAAATCAAA
* * * * * * *
4725315 GTATCAATATC-A-TCCATCTCAATGAA-GAGAGCGTGTTTTGGCTGCCTAATCA-CAAAATAAT
190 GCATTAATATCGAGT--ATCACAAT-AAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAAT
* * * * *** * * **** * *
4725376 GGAGATTATTACAAGAAT-CTTTTTTAACTAATTT-GC-TGA-ATGAACT-TTGCTTTAACG-AA
252 GAAGATTATTATAAGAATCCATGTTTGTTTCATTTAACAT-ACA--AACTCAAAATATAAGGAAA
* *
4725435 ATAAGT
314 AT-CGC
* * * * * *
4725441 GGCAAGAAAAACTTTACTTGCATAACCAATGCATCAATATTGTGCATCCTAAAGAAGACAACATG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
* *
4725506 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCGTAAATCCATGTTTGTCTCAGTTAAG
66 TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAAG
* *
4725571 GTATAAACTTTGAGTCTAAGGAAAACGGTGGAGTAAAAAACTTTTCTTATGAAATCAAAGCATTA
131 GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
* * * * * * * * *
4725636 ATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAACCATTAAAAGAAGGATGATTAA
196 ATATCGAGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATTAT
* * * * * * * *
4725701 TATATGAACCCTTGTTTGTTCCATTTGACATTCAAACTCAAATTATAAGG-AAAGC-C
261 TATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
* ** * ** * * ** * * * ** * * *
4725757 TGGCAAGAAACGCTTTTCTTATATAATCAAAACCTTAATATCATGTATGCTAATTAATAGAATGT
1 -GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGT
* * * *
4725822 GTTT-T--TG----------G--AG-AT---CATTA-TG-A-GAATCCATCTTTGTCTCT-TTTA
65 GTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCT-TAGTTA
* * * * * *
4725864 TGGGATAAACTTTGATT-TTA--AAAA-GGTAGTG-GAAAGAAGAGCATTTCTTGTGAAAATCAA
129 AGGTATAAACTTTGATTCTAAGGAAAACGGT-G-GAGAAA-AA-AACTTTTCTTATG-AAATCAA
* **** * ** * *
4725924 AGCATCAATATCCTCCATCCCAATGAA-GAGAGTGTGTTTTGGCTGCCTAATCA-CAAAATG-AT
189 AGCATTAATATCGAGTATCACAAT-AAGGAGAACGTGTTTTGGATGCCTAATCATGAAAA-GAAT
* * * * *** * ** * **** * *
4725986 GGAGATTATTACAAGAATCCTTTTTTAACTAATTTGCCGA-ATGAAA-T-TTGCTTTAACG-AAA
252 GAAGATTATTATAAGAATCCATGTTTGTTTCATTTAAC-ATA-CAAACTCAAAATATAAGGAAAA
* *
4726047 TAAGT
315 T-CGC
* * * * * * **
4726052 AGCAAGAAAAACTTTGCTTGCATAACGAATGCATCAATATTGTGCATCCCAAAGATGATAAAATG
1 GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
** * *
4726117 TTTATGGTGCCCAAT-ATTTGAAAGAATGGAGATTATTGTGTAAATCCATGTTTGTCTCAATTAA
66 TTTATGGTGCCCAATCA-TTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAA
*
4726181 GGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAATGCATT
130 GGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATT
* * * * * *
4726246 AATATC-ATGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAAGGATGATT
195 AATATCGA-GTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATT
* * * * * *
4726310 AATATAAGAA-CCTTGTTTGTTTCATTTGACATTCAAACTCAAATTATAAGG-AAAGC-C
259 ATTATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
*
4726367 TGGCAAGAAACGCTTTTCTT
1 -GGCAAGAAAAGCTTTTCTT
4726387 ATATAATCAA
Statistics
Matches: 2257, Mismatches: 627, Indels: 428
0.68 0.19 0.13
Matches are distributed among these distances:
291 3 0.00
292 27 0.01
293 136 0.06
294 229 0.10
295 239 0.11
296 128 0.06
297 21 0.01
298 21 0.01
300 10 0.00
301 4 0.00
302 8 0.00
303 10 0.00
304 4 0.00
305 2 0.00
306 2 0.00
307 4 0.00
308 10 0.00
309 8 0.00
310 4 0.00
311 10 0.00
313 19 0.01
314 19 0.01
315 144 0.06
316 253 0.11
317 246 0.11
318 662 0.29
319 31 0.01
320 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (318 bp):
GGCAAGAAAAGCTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAAAGAAGATAACGTG
TTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTTAGTTAAG
GTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTA
ATATCGAGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAGATTAT
TATAAGAATCCATGTTTGTTTCATTTAACATACAAACTCAAAATATAAGGAAAATCGC
Found at i:4726360 original size:610 final size:610
Alignment explanation
Indices: 4721269--4726810 Score: 6573
Period size: 611 Copynumber: 9.0 Consensus size: 610
4721259 AACATCTTAT
*
4721269 TTAAGGTATAAACTTTGATTATAAGGAAAACGGTGGAG-AAAAAACTTTTCTTATGAAATCAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* ** * *
4721333 CATTAATATCTTGTATCCTTATAAGGAGAATATGTTTTGGTTGCCTAATCATGAAAAGAAAGAAG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * *
4721398 CTTATTATAAGAATCCATGTTTCTTTCATTTGACATTCGAGCTCAAATTATAAGGAAAGTCGTGG
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGGAAA-TCGTGG
* * * * *
4721463 CAAGAAAAGCTTCTCTTATATAATTAAAGCATCAGTATCATCTATCCCAATGAATAGAATGTGTT
195 CAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTT
* * * ** * *
4721528 TTCGGAGACCTTTATGAGAATTAATCTTTGTTTCTTTTAAAGGACAAACTTTG-TTTTAAAAAGG
260 TTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGG
* ** * * *
4721592 TAGTGGAAAGAA-AGAATTTCTTAAGAAAATCAAAGCATCAATAGCATGCATCCTAATGAAGAGA
325 TAGTGGAAAGAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAGA
* ** * * * * *
4721656 GTGTGTTTTGGCAACCT-ATCACAATATAATGGAGATTATTAAAAGAATTCTTTTTTCTCTTATT
390 GCGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAA-TCTTTTTTATCTAATT
* * *
4721720 TGACGAATGAACTTTGCTTTAAGGATATAAGTGGCAAGAAAAACTTTACTTGCATAACCAATGCA
454 TGACGAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCA
*** *
4721785 TCAATATTGTGCATCCC--A-AAG-TCTTGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGAT
519 TCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGAT
* *
4721846 TATTGTGTAAATCCATGTTTGTCTCAT
584 TATTGCGTAAATCCATGTTTGTCTCAG
* * * *
4721873 TTAACGTAAAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTTTGAAATTAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * *
4721938 CATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTAGTTGCCTAATCACGAAAAGAATGAAG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * * * * *
4722003 ATTGTTATAAGAATCCATT-TTTGTTTTATTTAAAATACGAACTCAAATTTTAAGGAAAATAGTG
131 ATTATTATAAGAATCC-TTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGG-AAATCGTG
* * * *
4722067 CCAAGAAAAGCTTTTCTTATATAATCAAAATAACAATATCGTGTATCCCAATGAATAGAATGTGT
194 GCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGT
* * *
4722132 TTTTGGAGATCATTATGAGAATCC-CCTTTTGTCTCTTTTAAGAGAGAAACTTTGATTTTAAAAA
259 TTTTGGAGATCATTATGAGAATCCATC-TTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAA
* * * * *
4722196 TGTAGTGGAAAGGAA-AGCATTACTTACGAAAATCAAAGCACCAATATCATGCATCCCAAGGAAA
323 GGTAGTGGAAA-GAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAG
* *
4722260 AGAGCGTGTTTTGGCTACCTAATCACAAAAAAATGGAGATTATTACAAGAATCCATTTTTATCTA
387 AGAGCGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAAT-CTTTTTTATCTA
* * *
4722325 ATTTGACGAACGAACTTTGCTTTAAGGAAATAAGTGGCAGGAAAAACTTTTCTTGCATAACCAAT
451 ATTTGACGAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAAT
* * *
4722390 GCAT-TATATTGTGCATCCCAAAGAAGATGACGTGTTTATGGTGCCCAATCATTGAAAGAATAGA
516 GCATCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGA
*
4722454 TATTATTGCGTAAATCCATGTTTGTCTCA-
581 GATTATTGCGTAAATCCATGTTTGTCTCAG
* * * *
4722483 TTCAACGTATAAACTTTAATTCCAAGAAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAA
1 TT-AAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAA
* * * * * *
4722548 TCATTAATATCGTGTATCCCAATAAGGAGGAATGTGTTTCGATTGCCAAATCACGATAAGAATGA
65 GCATTAATATCGTGTATCCCAATAAGGA-GAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGA
* * * * *
4722613 AGATTGTTATAAGAATCCATT-TTTATTTCATTTGACATACGAACTCAAATTGTAAGGAAAATAG
129 AGATTATTATAAGAATCC-TTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGG-AAATCG
* * *
4722677 TGCCAAGAAAAGCTTTTCTTATACAATCAAAACAACAATATCATGTATCCCAATGAATAGAATGT
192 TGGCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGT
*
4722742 GTTTGTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAA
257 GTTTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAA
* *
4722807 AGGTAGTGGAAAGGAA-AGCATTACTTGCGAAAATCAAAGCACCAATATCATGCATCCCAAGGAA
322 AGGTAGTGGAAA-GAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAA
* * * *
4722871 GAGAGCGTGTTTTGGCTACCTAATCACAAAAAAATGGAAAATATTACAAGAATCTATTTTTGTCT
386 GAGAGCGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAATCT-TTTTTATCT
* * * *
4722936 TATTTGACGAA-CAAACTTTGCTTTAAGAAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCT
450 AATTTGACGAATGAAA-TTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCA
*
4723000 ATGCATCAATATTGTGCATCCCAAAGAAGATAACGTGCTTATGGTGCCCAATCATTGAAAGAATG
514 ATGCATCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATG
* * *
4723065 GAGATTATTGCATAAATCGACGTTTGTCTCAG
579 GAGATTATTGCGTAAATCCATGTTTGTCTCAG
* * *
4723097 TTAAGGTATACATTTTGATTCTAAGGAAAACGGAGGAGAAAAAAACTTTTCTTATGAAATCAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * * * *
4723162 CAATAATATTGTGTATCACAATAAGGAGAACGTGTTTTGGATGCCTAATCATGAAAAGAATGAAG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * * * * * *
4723227 ATTTTTATAAAAATCCATGTTTGTTCCATTTAAC-TTACGAACTCAAAATCTAATGAAAATCGTG
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGACATT-CGAACTCAAATTATAA-GGAAATCGTG
** * ** * ** * **
4723291 GCAAGAAAAGCTTTTCTTGCATAACCAACGCGTCAATATTGTGCATCCTGATGAAGATAATGAGT
194 GCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATG-A-AT-A-GA--
** * * * * *
4723356 TTATGGTGCCCAATCATTGAAAGAACAGAGATTATAGCGTAAATCCATATTTGTCT-TAGTTAAG
253 --AT-GTG-----TTTTTG-GAGATC----ATTAT-GAG--AATCCATCTTTGTCTCT-TTTAAG
* * * * * * * * **
4723420 GTATAAACTTTGATTCTAAGGAAA-ATGGTGGAGAAAAATA-CTTTTCTTG-TTAAATCAAAGCA
301 GGACAAACTTTGATTTTAA--AAAGGTAGTGGA-AAGAAGAGCATTTCTTGCGAAAATCAAAGCA
* ** * * * * * * *
4723482 TTACA-ATCGGGTATCACAA-CAAGGAGAACATGTTTTGGATGCCTAATCATGAAAAAAAT-GAC
363 TCA-ATATCATGCATCCCAAGGAA-GAGAGCGTGTTTTGGCTGCCTAATCA-CAAAAAAATGGA-
* * * * * * * * **** * *
4723544 GATTATTATAAGAATCCATTATTGTTTCATTTAAC--ATACAAACTCAAAATATAAGGGAAAT-C
424 GATTATTACAAGAAT-CTTTTTTATCTAATTTGACGAAT-GAAA-T-TTGCTTTAA-GGAAATAA
* * * * * * *
4723606 GCGGTAAGAAAAGCTTTTCCTGCATAACCAATGCGTCAATATTATGCATCCCAAAGAAGATGACG
484 GTGGCAAGAAAAACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGAAGATAACG
* * * * *
4723671 TGTTTATGGTGCCTAATCATTGAAAGAATGGATATTATTGCATAAATCCATGTTTGTCTTAT
549 TGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCGTAAATCCATGTTTGTCTCAG
* * * * *
4723733 TTAATGTATAAACTATGATTCCAAGGAAAACAGTGCAGAAAAAAACTTTTCTTATGAAATCAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * * * * *
4723798 CATTAATATCGAGTATCCCTATAAGGAGAACGTGTTTTGATTGCTTAATCATGGAAAGAATGAAG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * * * *
4723863 ATTATTATACGAATCCATGTTTGTTTCATTTGACAAAT-GAGCTCAAATTACAAGGAAAATCATG
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGAC-ATTCGAACTCAAATTATAAGG-AAATCGTG
* * * * ** *
4723927 GCAAGGAAAGCTTTTCTTATATAATCAAAATATTAATATCATATATCCCAAAAAATAGATTGTGT
194 GCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGT
* * * * *
4723992 TTTTGGAGATCTTTATAAGAATTCGTCTTTGTCTCTTTTAAGGGAGAAACTTTGATTTTAAAAAG
259 TTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAG
* * * * * * *
4724057 ATAATGGAAAG-AGAAGCATTTCTTGCAAAAATCAAAGTATCAATATCATCCATCTCAATGAAGA
324 GTAGTGGAAAGAAG-AGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGA
* *
4724121 GAGCGTGTTTTGGCTGCCTAATCACAAAATAATGGAGATTATTACAAGAATCTTTTTTAACTAAT
388 GAGCGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAATCTTTTTTATCTAAT
* * *
4724186 TTG-CTGAATGAACTTTGCTTTAACGAAATAAGTGGCAAGAAAAACTTTACTTGCATAACCAATG
453 TTGAC-GAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATG
* * * * *
4724250 CATCAATATTGTGCATCCTAAAGAAGACAGCATGTTTATGGTGCGCAATCATTGAAAGAATGGAG
517 CATCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAG
4724315 ATTATTGCGTAAATCCATGTTTGTCTCAG
582 ATTATTGCGTAAATCCATGTTTGTCTCAG
4724344 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * * *
4724409 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAACCATTAAAAGAAGGATG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * ** *
4724474 ATTAATATATGAACCCTTGTTTGTTTCATTTGACACACAAACTCAAATTATAAGGAAAATC-TGG
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGG-AAATCGTGG
* *
4724538 CAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATATATCCTAATGAATAGAATGTGTT
195 CAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTT
* * * *
4724603 TTTGGAGATCACTACGACAATCCATCTTTGTCTCTTTTAAGAGACAAACTTTGATTTTAAAAAGG
260 TTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGG
* * * *
4724668 TAGTGGAAAGAAAAGCATTTCTTGCAAAAATCAAAGCATCAATATCATGCATCCTAAGGAAGAAA
325 TAGTGGAAAGAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAGA
* ** * * *
4724733 GCATGTTTCAGTTGCCTAATCACAAAAAAATGGAGATTATTACAAGAATCTATTTCTATCTCATT
390 GCGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAATCT-TTTTTATCTAATT
* * * *
4724798 TGACGAACGAACA-TTGCTTTAAGGAAATAAGTGGTAA-AAAGAATTTTTTTTGCATAACCAATG
454 TGACGAATGAA-ATTTGCTTTAAGGAAATAAGTGGCAAGAAA-AACTTTTCTTGCATAACCAATG
* * * *
4724861 CGTCAATATTGTGCATCCCAAAGAAGATGACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAT
517 CATCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAG
* * *
4724926 ATTATTGCATAAATCCATGTTTGTCTTAT
582 ATTATTGCGTAAATCCATGTTTGTCTCAG
* * * * *
4724955 TTAATGTATAAACTATGATTCCAAGGAAAACAGTGCAGAAAAAAACTTTTCTTATGAAATCAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * * * * *
4725020 CATTAATATCGGGTATCCCTATAAGGAGAACGTGTTTTGATTGCTTAATCATGGAAAGAATGAAG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * * *
4725085 ATTATTATAAGAATCCATGTTTGTTTCATTTGACAAAT-GAGCTCAAATTACAAGGAAAATCATG
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGAC-ATTCGAACTCAAATTATAAGG-AAATCGTG
* * * * ** * *
4725149 GCAAGGAAAGCTTTTCTTATATAATCAAAATATTAATATCATATATCCCAAAAAATAGATTGCGT
194 GCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGT
* * * * *
4725214 TTTTGGAGATCTTTATAAGAATTCGTCTTTGTCTCTTTTAAGGGAGAAACTTTGATTTTAAAAAG
259 TTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAG
* * * * * * *
4725279 ATAATGGAAAG-AGAAGCATTTCTTGCAAAAATCAAAGTATCAATATCATCCATCTCAATGAAGA
324 GTAGTGGAAAGAAG-AGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGA
* *
4725343 GAGCGTGTTTTGGCTGCCTAATCACAAAATAATGGAGATTATTACAAGAATCTTTTTTAACTAAT
388 GAGCGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAATCTTTTTTATCTAAT
* * *
4725408 TTG-CTGAATGAACTTTGCTTTAACGAAATAAGTGGCAAGAAAAACTTTACTTGCATAACCAATG
453 TTGAC-GAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATG
* * *
4725472 CATCAATATTGTGCATCCTAAAGAAGACAACATGTTTATGGTGCCCAATCATTGAAAGAATGGAG
517 CATCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAG
4725537 ATTATTGCGTAAATCCATGTTTGTCTCAG
582 ATTATTGCGTAAATCCATGTTTGTCTCAG
* *
4725566 TTAAGGTATAAACTTTGAGTCTAAGGAAAACGGTGGAGTAAAAAACTTTTCTTATGAAATCAAAG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * * *
4725631 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAACCATTAAAAGAAGGATG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * * * * *
4725696 ATTAATATATGAACCCTTGTTTGTTCCATTTGACATTCAAACTCAAATTATAAGGAAAGCCTGGC
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGGAAATCGTGGC
* * * * * *
4725761 AAGAAACGCTTTTCTTATATAATCAAAACCTTAATATCATGTATGCTAATTAATAGAATGTGTTT
196 AAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTT
* *
4725826 TTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTATGGGATAAACTTTGATTTTAAAAAGGT
261 TTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGT
* * * *
4725891 AGTGGAAAGAAGAGCATTTCTTGTGAAAATCAAAGCATCAATATCCTCCATCCCAATGAAGAGAG
326 AGTGGAAAGAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAGAG
* ** *
4725956 TGTGTTTTGGCTGCCTAATCACAAAATGATGGAGATTATTACAAGAATCCTTTTTTAACTAATTT
391 CGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAAT-CTTTTTTATCTAATTT
* * * * *
4726021 GCCGAATGAAATTTGCTTTAACGAAATAAGTAGCAAGAAAAACTTTGCTTGCATAACGAATGCAT
455 GACGAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCAT
* **
4726086 CAATATTGTGCATCCCAAAGATGATAAAATGTTTATGGTGCCCAAT-ATTTGAAAGAATGGAGAT
520 CAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA-TTGAAAGAATGGAGAT
* *
4726150 TATTGTGTAAATCCATGTTTGTCTCAA
584 TATTGCGTAAATCCATGTTTGTCTCAG
*
4726177 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAATG
1 TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
* * * *
4726242 CATTAATATCATGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAAGGATG
66 CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
* * * *
4726307 ATTAATATAAGAA-CCTTGTTTGTTTCATTTGACATTCAAACTCAAATTATAAGGAAAGCCTGGC
131 ATTATTATAAGAATCCTTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGGAAATCGTGGC
* * * *
4726371 AAGAAACGCTTTTCTTATATAATCAAAACATTAATATCATGTATCCTAATTAATAGAATGTGTTT
196 AAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTT
* *
4726436 TTGGAGATCATTATGAGAATCCATCTTTATCTCTTTTATGGGACAAACTTTGATTTTAAAAAGGT
261 TTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGT
* * * * *
4726501 AGTGGAAAGAAGAGCATTTCTTGTGAAAATCAAAGCATCAATACCATTCATCCTAGGGAAGAGAG
326 AGTGGAAAGAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAGAG
* * * * * * ** *
4726566 TGTGTTTTGGCTGCCTCATCACTAAAAAATAGAGATTGTTACAAGAATCCGTTTTTGCCTTATTT
391 CGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAAT-CTTTTTTATCTAATTT
* * * * * *
4726631 GATGAACGAATTTTTCTTTAAGGAAATAAGTGGCAAGAGATACTTTTCTTGCATAACCAATG-AG
455 GACGAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCA-
* **
4726695 TCAATATTGTGCATCCCATAGAAGATAACGTGTTTATGGTGCCCAATTGTTGAAAG-A---A-AT
519 TCAATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGAT
* * *
4726755 CATTGCGTAAATCTATATTTGTCTCAG
584 TATTGCGTAAATCCATGTTTGTCTCAG
4726782 TTAAGGTATAAACTTTGATTCTAAGGAAA
1 TTAAGGTATAAACTTTGATTCTAAGGAAA
4726811 TATAGTGGCA
Statistics
Matches: 4245, Mismatches: 601, Indels: 183
0.84 0.12 0.04
Matches are distributed among these distances:
604 36 0.01
605 280 0.07
606 24 0.01
607 77 0.02
608 101 0.02
609 3 0.00
610 848 0.20
611 1328 0.31
612 748 0.18
613 201 0.05
614 85 0.02
615 4 0.00
616 3 0.00
617 4 0.00
620 2 0.00
621 7 0.00
622 4 0.00
626 3 0.00
627 7 0.00
628 1 0.00
631 5 0.00
632 4 0.00
633 5 0.00
634 83 0.02
635 57 0.01
636 319 0.08
637 5 0.00
638 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (610 bp):
TTAAGGTATAAACTTTGATTCTAAGGAAAACGGTGGAGAAAAAAACTTTTCTTATGAAATCAAAG
CATTAATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGAATGAAG
ATTATTATAAGAATCCTTGTTTGTTTCATTTGACATTCGAACTCAAATTATAAGGAAATCGTGGC
AAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTT
TTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGT
AGTGGAAAGAAGAGCATTTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAGAG
CGTGTTTTGGCTGCCTAATCACAAAAAAATGGAGATTATTACAAGAATCTTTTTTATCTAATTTG
ACGAATGAAATTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCATC
AATATTGTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTA
TTGCGTAAATCCATGTTTGTCTCAG
Found at i:4726854 original size:155 final size:157
Alignment explanation
Indices: 4726649--4726970 Score: 445
Period size: 155 Copynumber: 2.1 Consensus size: 157
4726639 AATTTTTCTT
* *
4726649 TAAGGAAATAAGTGGCAAGAGATACTTTTCTTGCATAACCAATGAGTCAATATTGTGCATCCCAT
1 TAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGAGTCAATATTGTGCATCCCAT
* * ** * *
4726714 AGAAGATAACGTGTTTATGGTGCCCAATTGTTG-A-AA-GAAATCATTGCGTAAATCTATATTTG
66 AGAAGATAACATATTTATGGTGCCCAATCATTGAAGAAGGAAATCATTGCGAAAATCCATATTTG
4726776 TCTCAGTTAAGGTATAAACTTTGATTC
131 TCTCAGTTAAGGTATAAACTTTGATTC
* *
4726803 TAAGGAAATATAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCA-TCAATATTTTGCATGCC
1 TAAGGAAATA-AGTGGCAAGAAAAACTTTTCTTGCATAACCAATG-AGTCAATATTGTGCATCCC
* * *
4726867 ATAGAAGATAACATATTTATGGTGCCCAATCATTGAAGGAATGGATATTATTGCGAAAATCCATG
64 ATAGAAGATAACATATTTATGGTGCCCAATCATTGAA-GAA-GGAAATCATTGCGAAAATCCATA
* *
4726932 TTTGTCTCATTTAAGGTATAAACTTTGATTT
127 TTTGTCTCAGTTAAGGTATAAACTTTGATTC
4726963 TAAGGAAA
1 TAAGGAAA
4726971 ACGATGGTGA
Statistics
Matches: 146, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
154 10 0.07
155 78 0.53
156 2 0.01
158 2 0.01
160 54 0.37
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (157 bp):
TAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGAGTCAATATTGTGCATCCCAT
AGAAGATAACATATTTATGGTGCCCAATCATTGAAGAAGGAAATCATTGCGAAAATCCATATTTG
TCTCAGTTAAGGTATAAACTTTGATTC
Found at i:4727602 original size:159 final size:159
Alignment explanation
Indices: 4727394--4727715 Score: 454
Period size: 159 Copynumber: 2.0 Consensus size: 159
4727384 TTACTTTAAC
*
4727394 GAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAGGAA
1 GAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGAA
** *
4727459 GATAACGTGTTTATGGTGCTGAATCATTGCTAA-AATGGAGATCACCGCATAAATCCAT-GTT-T
66 GATAACGTGTTTATGGTGCCCAATCATTG-AAAGAATGGAGATCACCGCATAAATCCATAGTTAT
4727521 GTCTCAGTTAAGGTATAAACTTTGATTCTAAG
130 GT-TC-GTTAAGGTATAAACTTTGATTCTAAG
* * *
4727553 GAAATAAGTGGCAAGAGAA-ATTTTTCTTGCATAACCAATGCATCAATATTTTGCATCCCAAAGA
1 GAAATAAGCGGCAAGA-AATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGA
* * ** ** *
4727617 AGATAATGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGTGTAAATCCATATTTAT
65 AGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATCACCGCATAAATCCATAGTTAT
4727682 GTTCGTTAAGGTATAAACTTTGATTCTAAG
130 GTTCGTTAAGGTATAAACTTTGATTCTAAG
4727712 GAAA
1 GAAA
4727716 ACGGTAGAGA
Statistics
Matches: 145, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
158 2 0.01
159 134 0.92
160 6 0.04
161 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (159 bp):
GAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGAA
GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATCACCGCATAAATCCATAGTTATG
TTCGTTAAGGTATAAACTTTGATTCTAAG
Found at i:4728354 original size:159 final size:159
Alignment explanation
Indices: 4728150--4728485 Score: 462
Period size: 159 Copynumber: 2.1 Consensus size: 159
4728140 ATGATGAATG
* * * *
4728150 AACTTTGCTT-TAACGAAATAAGCGGCAAGAAATACTTTTCTTGCATATCCAATGCATTAATATT
1 AACTTTGATTCTAAGGAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATT
* * * *
4728214 GTGCATCCCAAGGAAGATAACGTGTTCATGGTGCCGAATCATTGATAGAAAGGAGATCATTGCGT
66 GTGCATCCCAAAGAAGATAACGTGTTCATGGAGCCCAATCATTGAAAGAAAGGAGATCATTGCGT
* *
4728279 AAATCCATGTTTGTC-TCAATTAAGGTATA
131 AAATCCACGTTTATCTTC-ATTAAGGTATA
* * **
4728308 AACTTTGATTCTAAGGAAATAAGTGGCAAGAGAA-ATTTTTCTTGCATAACCAATGTGTCAATAT
1 AACTTTGATTCTAAGGAAATAAGCGGCAAGA-AATACTTTTCTTGCATAACCAATGCATCAATAT
* * * * *
4728372 TTTGCATCCCAAAGAAGATAACGTGTTTATGGAGCCCAATCATTGAAAGAATGGAGATTATTGTG
65 TGTGCATCCCAAAGAAGATAACGTGTTCATGGAGCCCAATCATTGAAAGAAAGGAGATCATTGCG
4728437 TAAATCCACGTTTATCTTCATTAAGGTATA
130 TAAATCCACGTTTATCTTCATTAAGGTATA
4728467 AACTTTGATTCTAAGGAAA
1 AACTTTGATTCTAAGGAAA
4728486 ATGGTGAAGA
Statistics
Matches: 156, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
158 9 0.06
159 143 0.92
160 4 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (159 bp):
AACTTTGATTCTAAGGAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATT
GTGCATCCCAAAGAAGATAACGTGTTCATGGAGCCCAATCATTGAAAGAAAGGAGATCATTGCGT
AAATCCACGTTTATCTTCATTAAGGTATA
Found at i:4729257 original size:770 final size:771
Alignment explanation
Indices: 4727002--4729088 Score: 3147
Period size: 770 Copynumber: 2.7 Consensus size: 771
4726992 TTACGAAAAC
* *
4727002 AAGGAGAATGTATTTTGGTTGCCTAATCAT-GAAACGAATGAAGATTATTATAAGAATCCATTTT
1 AAGGAGAATGTGTTTTGGTTGCCTAATCATGGAAA-GAATGAAGATTATTATAAGAATCCATATT
* * ** * * *
4727066 TGTTTCATTTCACTTATTAACTCAAATTATAAGGAAAATTGTGGCAAGAAAAGTTTTTGTTATAT
65 TGTTTCATTTGACATACAAACTCAAATTATAAGGAAAA-TCTGGCAAGAAAAGCTTTTCTTATAT
* * * *
4727131 AATCAAAACACCAATATCATGTATCCTAATGAAGAGATTGTGTTTTCGTAGAGAGT--TT-TGAG
129 AATCAAAACATCAATATCATGTATCCTAATGAATAGAATGTGTTTT--TAGAGA-TCATTATGAC
* * ** *
4727193 AACCCACCTTCATCTCTTTTAAAGGG-CAAACATTGATTTTAAAAAGGTAGTGGAGAA-AAAAGC
191 AATCCATCTTTGTCTCTTTT-AAGGGACAAACTTTGATTTTAAAAAGGTAGTGGA-AAGAAAAGC
* * * * * *
4727256 ATTTCTTGCAAAAATCAAAGCATCAATATCATCCAACCCAATGAAGAGAGCATGTTTTGGCTACC
254 ATTTCTTGCAAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAAAGCATGTTTCGGCTGCC
* *
4727321 TAATCACAAAAAAAATGGAGATTATTATAAGAATCTATTTTTGTCTTATTTGACGAATGAACTTT
319 TAATCAC-AATAAAATGGAGATTATTACAAGAATCTATTTTTGTCTTATTTGACGAATGAACTTT
*
4727386 ACTTTAACGAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATC
383 GCTTTAACGAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATC
* ** ** *
4727451 CCAAGGAAGATAACGTGTTTATGGTGCTGAATCATTGCTAA-AATGGAGATCACCGCATAAATCC
448 CCAAGGAAGATAACGTGTTTATGGTGCCGAATCATT-AAAAGAATGGAGATCATTGCGTAAATCC
*
4727515 ATGTTTGTCTCAGTTAAGGTATAAACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCT
512 ATGTTTGTCTCAATTAAGGTATAAACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCT
*
4727580 TGCATAACCAATGCATCAATATTTTGCATCCCAAAGAAGATAATGTGTTTATGG-TGCCCAATCA
577 TGCATAACCAATGCATCAATATTTTGCATCCCAAAGAAGATAACGTGTTTATGGATGCCCAATCA
* * *
4727644 TTGAAAGAATGGAGATTATTGTGTAAATCCATATTTATGTTCGTTAAGGTATAAACTTTGATTCT
642 TTGAAAGAATGGAGATTATTGTGTAAATCCATGTTTATCTTCATTAAGGTATAAACTTTGATTCT
* * *
4727709 AAGGAAAACGGTAGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGTATCTCAAT
707 AAGGAAAATGGTAGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGAGTATCCCAAT
* * * * * * * *
4727774 AGGGAGAATATGTTTTGGTTGCCTAATCATGAAAAGTAT-AATGATTAATATAAGAACCCTTGTT
1 AAGGAGAATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAA-GATTATTATAAGAATCCATATT
4727838 TGTTTCATTTGACATACAAACTCAAATTATAAGGAAAATCTGGCAAGAAAAGCTTTTCTTATATA
65 TGTTTCATTTGACATACAAACTCAAATTATAAGGAAAATCTGGCAAGAAAAGCTTTTCTTATATA
*
4727903 ATCAAAACATCAATATCATGTATCCTAATGAATAGAATGTGTTTTTGGAGATCATTATGACAATC
130 ATCAAAACATCAATATCATGTATCCTAATGAATAGAATGTGTTTTTAGAGATCATTATGACAATC
*
4727968 CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCC
195 CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCT
*
4728033 TGCAAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAAAGCATGTTTCGACTGCCTAATCA
260 TGCAAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAAAGCATGTTTCGGCTGCCTAATCA
* *
4728098 CAATAAAATGGAGATTATTACAAGAATCTATTTTTGTCTTATATGATGAATGAACTTTGCTTTAA
325 CAATAAAATGGAGATTATTACAAGAATCTATTTTTGTCTTATTTGACGAATGAACTTTGCTTTAA
* *
4728163 CGAAATAAGCGGCAAGAAATACTTTTCTTGCATATCCAATGCATTAATATTGTGCATCCCAAGGA
390 CGAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAGGA
* * * *
4728228 AGATAACGTGTTCATGGTGCCGAATCATTGATAGAAAGGAGATCATTGCGTAAATCCATGTTTGT
455 AGATAACGTGTTTATGGTGCCGAATCATTAAAAGAATGGAGATCATTGCGTAAATCCATGTTTGT
4728293 CTCAATTAAGGTATAAACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCTTGCATAAC
520 CTCAATTAAGGTATAAACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCTTGCATAAC
**
4728358 CAATGTGTCAATATTTTGCATCCCAAAGAAGATAACGTGTTTATGGA-GCCCAATCATTGAAAGA
585 CAATGCATCAATATTTTGCATCCCAAAGAAGATAACGTGTTTATGGATGCCCAATCATTGAAAGA
*
4728422 ATGGAGATTATTGTGTAAATCCACGTTTATCTTCATTAAGGTATAAACTTTGATTCTAAGGAAAA
650 ATGGAGATTATTGTGTAAATCCATGTTTATCTTCATTAAGGTATAAACTTTGATTCTAAGGAAAA
*
4728487 TGGT-GAAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGAGTATCCCTAT
715 TGGTAG-AGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGAGTATCCCAAT
* * *
4728544 AAGGAGAACGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGGTTATTATAAGAATCCATATTT
1 AAGGAGAATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATATTT
* *
4728609 GTTTCATTTGACATACAAAGTCAAATTATAAGGAAAATCTGGAAAGAAAAGCTTTTCTTATATAA
66 GTTTCATTTGACATACAAACTCAAATTATAAGGAAAATCTGGCAAGAAAAGCTTTTCTTATATAA
* *
4728674 TCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTAGAGATCATTATGACAATTC
131 TCAAAACATCAATATCATGTATCCTAATGAATAGAATGTGTTTTTAGAGATCATTATGACAATCC
4728739 ATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCTT
196 ATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCTT
* * ** *
4728804 GC-AAAATGAAAAGCATCAATATCATGCATTCTTAGGAAGAAAGCATGTTTCGGCGGCCTAATCA
261 GCAAAAAT-CAAAGCATCAATATCATGCATCCCAAGGAAGAAAGCATGTTTCGGCTGCCTAATCA
4728868 CAATAAAATGGAGATTATTACAAGAATCTATTTTTGTCTTATTTGACGAATGAACTTTGCTTTAA
325 CAATAAAATGGAGATTATTACAAGAATCTATTTTTGTCTTATTTGACGAATGAACTTTGCTTTAA
* ** * * * *
4728933 GGAAATAAATGGCAA-AAAGAACTTTTCTTGTATAACCAATGCGTCAATATTGTGCATCCCAAAG
390 CGAAATAAGCGGCAAGAAA-TACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAGG
* * * * * *
4728997 AATATGACGTGTTTATGGTGCCCAATCATTAAAAGAATGGATATTATTGCGCAAATCCATGTTTG
454 AAGATAACGTGTTTATGGTGCCGAATCATTAAAAGAATGGAGATCATTGCGTAAATCCATGTTTG
* *
4729062 TCTCATTTAACGTATAAACTTTGATTC
519 TCTCAATTAAGGTATAAACTTTGATTC
4729089 CATGGAAAAC
Statistics
Matches: 1194, Mismatches: 108, Indels: 28
0.90 0.08 0.02
Matches are distributed among these distances:
768 1 0.00
769 15 0.01
770 907 0.76
771 186 0.16
772 82 0.07
773 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (771 bp):
AAGGAGAATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATATTT
GTTTCATTTGACATACAAACTCAAATTATAAGGAAAATCTGGCAAGAAAAGCTTTTCTTATATAA
TCAAAACATCAATATCATGTATCCTAATGAATAGAATGTGTTTTTAGAGATCATTATGACAATCC
ATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCTT
GCAAAAATCAAAGCATCAATATCATGCATCCCAAGGAAGAAAGCATGTTTCGGCTGCCTAATCAC
AATAAAATGGAGATTATTACAAGAATCTATTTTTGTCTTATTTGACGAATGAACTTTGCTTTAAC
GAAATAAGCGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAGGAA
GATAACGTGTTTATGGTGCCGAATCATTAAAAGAATGGAGATCATTGCGTAAATCCATGTTTGTC
TCAATTAAGGTATAAACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCTTGCATAACC
AATGCATCAATATTTTGCATCCCAAAGAAGATAACGTGTTTATGGATGCCCAATCATTGAAAGAA
TGGAGATTATTGTGTAAATCCATGTTTATCTTCATTAAGGTATAAACTTTGATTCTAAGGAAAAT
GGTAGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGAGTATCCCAAT
Found at i:4730037 original size:159 final size:159
Alignment explanation
Indices: 4729833--4730168 Score: 480
Period size: 159 Copynumber: 2.1 Consensus size: 159
4729823 TTGACGAGTG
* * *
4729833 AACTTTGCTT-TAACGAAATAAGTGGTAAGAAATATTTTTCTTGCATAACCAATGCATCAATATT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGAAATATTTTTCTTGCATAACCAATGCATCAATATT
** * * * * **
4729897 GTGCATCCCAGGGAAGATAACATGTTTATGCTGTCGAATCTTTGATAGAATAGAGATCATTTTGT
66 GTGCATCCCAAAGAAGATAACATGTTTATGCTGCCCAATCATTGAAAGAATAGAGATCATTGCGT
*
4729962 AAATCCATGTTTGTC-TCAGTTAAGGTATA
131 AAATCCACGTTTGTCTTC-GTTAAGGTATA
4729991 AACTTTGATTCTAAGGAAATAAGTGGCAAGAGAA-ATTTTTCTTGCATAACCAATGCATCAATAT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGA-AATATTTTTCTTGCATAACCAATGCATCAATAT
* * * * *
4730055 TTTGCATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCG
65 TGTGCATCCCAAAGAAGATAACATGTTTATGCTGCCCAATCATTGAAAGAATAGAGATCATTGCG
4730120 TAAATCCACGTTTGTCTTCGTTAAGGTATA
130 TAAATCCACGTTTGTCTTCGTTAAGGTATA
4730150 AACTTTGATTCTAAGGAAA
1 AACTTTGATTCTAAGGAAA
4730169 ACGGTGGAGA
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
158 9 0.06
159 145 0.92
160 4 0.03
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (159 bp):
AACTTTGATTCTAAGGAAATAAGTGGCAAGAAATATTTTTCTTGCATAACCAATGCATCAATATT
GTGCATCCCAAAGAAGATAACATGTTTATGCTGCCCAATCATTGAAAGAATAGAGATCATTGCGT
AAATCCACGTTTGTCTTCGTTAAGGTATA
Found at i:4730642 original size:768 final size:753
Alignment explanation
Indices: 4729260--4730673 Score: 1868
Period size: 768 Copynumber: 1.9 Consensus size: 753
4729250 AGGAAAATCA
* * * * **
4729260 TGGCAAGAAAAGCTTTTCTTGCATAACCAGTGCGTCAATATTGTGCCTCCTATTGAAGATAACGT
1 TGGCAAGAAAAGCTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGAAGATAACGT
* * *
4729325 GTTTATGGTGCCCAATCATTGAAAAAACAGAGATTATTGCGTAAATCCATGTTTGCCTCATTTAA
66 GTTTATGGTGCCCAATCATTGAAAAAACAGAGATTATTGCGTAAATCCACGTTTGCCTAATATAA
* * * *
4729390 GCATTAATAACGGTGGATAAAAAAAATTTTCTTATGAAATCAAAGCATTAATAACGAGTATCCCT
131 ACATTAAAAACGGTGGA-AAAAAAAATTTTCTTATGAAATCAAAACATTAATAACGAGTATCCCA
* * *
4729455 ATAAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGT
195 ATAAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAAAATGAAGATTAATATAAGAACCCATGT
* ** * * * *
4729520 TTGTTTCATTTGACTTATGAACTCAAATTATGAGGAAAATCATGGCAAGGAAAGCTTTTCTTATT
260 TTGTTTCATTTGACATACAAACCCAAATTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTATA
* * *
4729585 TAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTAAGAGATCGTTATGACAA
325 TAATCAAAACATCAATACCATGTATCCCAATGAATAGAATATGTTTTAAGAGATCATTATGACAA
* * * * *
4729650 TTCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGAATTT
390 TCCATCTTTATCTCTTTTAAGAGACAAACTTTAATTTTAAAAAGGTAGTGGAAAGAAAAGAATTA
* * * * *
4729715 TTTGCGAAAATCAAAGCATCAATATCATGCATCCCAATAAAGAGAGCGTGTTTTGGCTACCTAAT
455 CTTGCCAAAATCAAAACACCAATATCATGCATCCCAAGAAAGAGAGCGTGTTTTGGCTACCTAAT
* * * * * ** *
4729780 CACAAAATAAGTAGATTATTACAAGAATCCTTTTTTGTTTTATTTGACGAGTGAACTTTGCTTTA
520 CACAAAAGAAGGAGATTATTAAAACAATCCTTTTTTGTCTTATTTGACGAACGAACTTTACTTTA
* * * *
4729845 ACGAAATAAGTGGTAAGAAATATTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAGGG
585 ACGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATACATCAATATTGTGCATCCCAGGG
4729910 AAGATAACATGTTTATGCTGTCGAATCTTTGATAGAATAGAGATCATTTTGTAAATCCATGTTTG
650 AAGATAACATGTTTATGCTGTCGAATCTTTGATAGAATAGAGATCATTTTGTAAATCCATGTTTG
4729975 TCTCAGTTAAGGTATAAACTTTGATTCTAAGGAAATAAG
715 TCTCAGTTAAGGTATAAACTTTGATTCTAAGGAAATAAG
* *
4730014 TGGCAAGAGAAA-TTTTTCTTGCATAACCAATGCATCAATATTTTGCATCCCAAAGAAGATAACG
1 TGGCAAGA-AAAGCTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGAAGATAACG
* **
4730078 TGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCGTAAATCCACGTTTGTCTTCGTTA
65 TGTTTATGGTGCCCAATCATTGAAAAAACAGAGATTATTGCGTAAATCCACGTTTG-C--C--TA
* * * *
4730143 AGGTATAAACTTTGATTCTAAGGAAAACGGTGG-AGAAAAACTTTTCTTATGAGATTAAAACATT
125 A--TATAAAC----A-T-T-A--AAAACGGTGGAAAAAAAAATTTTCTTATGAAATCAAAACATT
* * * * **
4730207 AATATCGTGTATCCCAATAAGGAGAATGTGTTTTGGTTTCCTAATCAT-GAAAAATATGTTGATT
179 AATAACGAGTATCCCAATAAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAAA-ATGAAGATT
*
4730271 AATATAAGAACCCGTGTTTGTTTCATTTGACATACAAACCCAAATTATAAGGAAAATC-TGGCAA
243 AATATAAGAACCCATGTTTGTTTCATTTGACATACAAACCCAAATTATAAGGAAAATCATGGCAA
4730335 GAAAAGCTTTTCTTATATAATCAAAACATCAATACCATGTATCCCAATGAATAGAATATGTATTT
308 GAAAAGCTTTTCTTATATAATCAAAACATCAATACCATGTATCCCAATGAATAGAATATGT-TTT
* * * *
4730400 -GGATATCATTATGAGAATCCATGTTTATCTCTTTTAAGAGACAAACTTTAATTTTAAAAAGGTA
372 AAGAGATCATTATGACAATCCATCTTTATCTCTTTTAAGAGACAAACTTTAATTTTAAAAAGGTA
* * * * *
4730464 GTGGAAAGAAATGCATTACTTGCCAAAATCAAAACCCCGATATCATGCATCCCAAGGAAGAGAGC
437 GTGGAAAGAAAAGAATTACTTGCCAAAATCAAAACACCAATATCATGCATCCCAAGAAAGAGAGC
* * * * *
4730529 GTGTTTTGGTTGCCTAATTAGAAAAGAATGGAGATTATTAAAACAAT-TTATTTTTGTCTTATTT
502 GTGTTTTGGCTACCTAATCACAAAAGAA-GGAGATTATTAAAACAATCCT-TTTTTGTCTTATTT
* *
4730593 GACGAACGAACTTTACTTTAAGGAAATAAGTGGCAGGAAAAACTTTTCTTGCATAACCAATACAT
565 GACGAACGAACTTTACTTTAACGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATACAT
4730658 CAATATTGTGCATCCC
630 CAATATTGTGCATCCC
4730674 CAAGAAGATG
Statistics
Matches: 559, Mismatches: 80, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
754 104 0.19
755 4 0.01
757 1 0.00
759 2 0.00
761 5 0.01
765 1 0.00
766 1 0.00
767 202 0.36
768 230 0.41
770 9 0.02
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (753 bp):
TGGCAAGAAAAGCTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAGAAGATAACGT
GTTTATGGTGCCCAATCATTGAAAAAACAGAGATTATTGCGTAAATCCACGTTTGCCTAATATAA
ACATTAAAAACGGTGGAAAAAAAAATTTTCTTATGAAATCAAAACATTAATAACGAGTATCCCAA
TAAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAAAATGAAGATTAATATAAGAACCCATGTT
TGTTTCATTTGACATACAAACCCAAATTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTATAT
AATCAAAACATCAATACCATGTATCCCAATGAATAGAATATGTTTTAAGAGATCATTATGACAAT
CCATCTTTATCTCTTTTAAGAGACAAACTTTAATTTTAAAAAGGTAGTGGAAAGAAAAGAATTAC
TTGCCAAAATCAAAACACCAATATCATGCATCCCAAGAAAGAGAGCGTGTTTTGGCTACCTAATC
ACAAAAGAAGGAGATTATTAAAACAATCCTTTTTTGTCTTATTTGACGAACGAACTTTACTTTAA
CGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATACATCAATATTGTGCATCCCAGGGA
AGATAACATGTTTATGCTGTCGAATCTTTGATAGAATAGAGATCATTTTGTAAATCCATGTTTGT
CTCAGTTAAGGTATAAACTTTGATTCTAAGGAAATAAG
Found at i:4731997 original size:49 final size:49
Alignment explanation
Indices: 4731942--4732035 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
4731932 AAGAATGTGT
*
4731942 TTTGGTTGCCTAATCAAGAAAAGAATGAAGATTATTATAAGAATCCACG
1 TTTGGTTGCCTAATCAAGAAAAGAATGAAGATTATTACAAGAATCCACG
*
4731991 TTTGGTTGCCTAATCAAGAAAAGAATGGAGATTATTACAAGAATC
1 TTTGGTTGCCTAATCAAGAAAAGAATGAAGATTATTACAAGAATC
4732036 TATTTTTGTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (49 bp):
TTTGGTTGCCTAATCAAGAAAAGAATGAAGATTATTACAAGAATCCACG
Found at i:4733333 original size:612 final size:610
Alignment explanation
Indices: 4732168--4733356 Score: 1568
Period size: 612 Copynumber: 1.9 Consensus size: 610
4732158 TGTCTCAGTT
* * * *
4732168 AAGGTATAAACTTTCATTCTGAGGAAAATGTTGGAGAAAAAACTTTTCTTATTAAATCAAAGCAA
1 AAGGTATAAACTTGCATTCTAAGGAAAATGGTGGAGAAAAAACTTTTCTTATGAAATCAAAGCAA
* * * *
4732233 TAATGTCGTGTATCCCAATAAGGAGAACATCTTTTAGGTGCCTAATCATGAAAATAATGAAGACT
66 TAATATCATGTATCCCAATAAGGAGAACATCGTTTAGGTGCCTAATCATGAAAAGAATGAAGACT
* * * **
4732298 ATTATAAGAATCTATGTTCGTTTCATTTGACATACGAACTTAAATTATAAAGGAAATCGCAGGAA
131 ATTATAAGAATCCATGTTCGTTTCATTTAACATACGAACTCAAAACATAAAGGAAATCGCAGGAA
* * * *
4732363 GAAAAGCTTTTCTAATATAGATCAAAACATTAATATCTTGTATCCTATTGAATAGAATGTGTTTT
196 GAAAAGCTTTTCTAATATAGATCAAAACATTAATATCATGTATCCAAATGAATAGAATGTGTTTC
* * * * *
4732428 TGGAGATCATTACAAGAATTCATTTTTGTATCTTTTCAGGGACAAACTTTGAATTTAAAATGGTA
261 TGGAGATCATTACAAGAATCCATCTTTGTATCTCTTAAGGGACAAACTTTGAATTTAAAAAGGTA
* * * *
4732493 GTGGAAAAAAAAGCATTTCTTGCAAAAATCAAAGCATCAATATCGTGCATCCCATTGAAGAGAGC
326 GTGGAAAAAAAAGCATTTCTTGCAAAAATCAAAGAATCAATATCATGCATCCCAATCAAGAGAGC
* * * * *
4732558 GTGTTTTGGCTACCTAATCACAATATAATGGAGACTATTACAAGAATCCTTTTTTGCTTATTTGA
391 ATGTTGTGGCTACCTAATCACAAAAAAATGGAGACTATTACAAGAATCCTTTTTTACTTATTTGA
* * *
4732623 CGAACGAACTTTGCTTTAAGGAAAAAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCGTCA
456 CGAAC-AACATTGCTTTAAGGAAAAAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATACATCA
4732688 ATATTGTGCATCCCAAAGAAGATAACATGTTTATGGTGCCTAATCACTGAAAAAATAGAGATTAT
520 ATATTGTGCATCCCAAAGAAGATAACATGTTTATGGTGCCTAATCACTGAAAAAATAGAGATTAT
4732753 TGTGTAAGTGCATATTTGCCTCATTA
585 TGTGTAAGTGCATATTTGCCTCATTA
* * *
4732779 AAGGTATAAACTTGGATTCTAAGGAAAATGGTGGAGAAAAAAGCTTTTCTTATGAAATCAAATCC
1 AAGGTATAAACTTGCATTCTAAGGAAAATGGTGGAGAAAAAA-CTTTTCTTATGAAATCAAAGCA
* *
4732844 TTAATATCATGTATCCCAATAAGGAGAA-AGT-GTTTGGGTTGCCTAATCGA-GAAAAGAATGAA
65 ATAATATCATGTATCCCAATAAGGAGAACA-TCGTTTAGG-TGCCTAATC-ATGAAAAGAATGAA
* * * *
4732906 GATTATTATAAGAATCCGTGTTTGTTTCGTTTAACATACGAACTCAAAACAT-AAGGAAAATCG-
127 GACTATTATAAGAATCCATGTTCGTTTCATTTAACATACGAACTCAAAACATAAAGG-AAATCGC
* * * * *
4732969 GGGCAA-AAAAGCTTTTCTTATGTA-ATCAAAACATTAATCTCATGTATCCAAATGAATAGAATT
191 AGG-AAGAAAAGCTTTTCTAATATAGATCAAAACATTAATATCATGTATCCAAATGAATAGAATG
** * * *
4733032 TGTTTCTGGAGATCATTATGAGAATCCATCTTTGTCTCTCTTAAGGGGCAAACTTTGATTTTAAA
255 TGTTTCTGGAGATCATTACAAGAATCCATCTTTGTATCTCTTAAGGGACAAACTTTGAATTTAAA
* ** * *
4733097 AAGGTAGTGGAAAGAAAAGCATTTCTTGTGAAAATCAAAGAATCAGTATCATGCATCGCAATCAA
320 AAGGTAGTGGAAAAAAAAGCATTTCTTGCAAAAATCAAAGAATCAATATCATGCATCCCAATCAA
* * * *
4733162 GGGAGCATGTTGTGGCTGCCTAGTCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTA
385 GAGAGCATGTTGTGGCTACCTAATCAC-AAAAAAATGGAGACTATTACAAGAATCC-TTTTT-TA
* * * *
4733227 C-TATTTGACAGATA-AACATTGCTTTAAGGAAATAAGTGGCAAGAAAAATTTTTCTTTCATTAC
447 CTTATTTGAC-GA-ACAACATTGCTTTAAGGAAAAAAGTGGCAAGAAAAACTTTTCTTGCATAAC
* ** * *
4733290 CAATACATCAATATTGTGCATCCTAAAGAAGATAATGTGTTTATGGTGCCTAATCATTGAAAGAA
510 CAATACATCAATATTGTGCATCCCAAAGAAGATAACATGTTTATGGTGCCTAATCACTGAAAAAA
4733355 TA
575 TA
4733357 AAGAAAAACT
Statistics
Matches: 496, Mismatches: 71, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
610 166 0.33
611 91 0.18
612 233 0.47
613 5 0.01
614 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (610 bp):
AAGGTATAAACTTGCATTCTAAGGAAAATGGTGGAGAAAAAACTTTTCTTATGAAATCAAAGCAA
TAATATCATGTATCCCAATAAGGAGAACATCGTTTAGGTGCCTAATCATGAAAAGAATGAAGACT
ATTATAAGAATCCATGTTCGTTTCATTTAACATACGAACTCAAAACATAAAGGAAATCGCAGGAA
GAAAAGCTTTTCTAATATAGATCAAAACATTAATATCATGTATCCAAATGAATAGAATGTGTTTC
TGGAGATCATTACAAGAATCCATCTTTGTATCTCTTAAGGGACAAACTTTGAATTTAAAAAGGTA
GTGGAAAAAAAAGCATTTCTTGCAAAAATCAAAGAATCAATATCATGCATCCCAATCAAGAGAGC
ATGTTGTGGCTACCTAATCACAAAAAAATGGAGACTATTACAAGAATCCTTTTTTACTTATTTGA
CGAACAACATTGCTTTAAGGAAAAAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATACATCAA
TATTGTGCATCCCAAAGAAGATAACATGTTTATGGTGCCTAATCACTGAAAAAATAGAGATTATT
GTGTAAGTGCATATTTGCCTCATTA
Found at i:4733649 original size:326 final size:327
Alignment explanation
Indices: 4733054--4733686 Score: 950
Period size: 326 Copynumber: 1.9 Consensus size: 327
4733044 TCATTATGAG
* *
4733054 AATCCATCTTTGTCTCTCTTAAGGGGCAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
1 AATCCATCTTTGACTCTCTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
* * * * *
4733119 TTCTTGTGAAAATCAAAGAATCAGTATCATGCATCGCAATCAAGGGAGCATGTTGTGGCTGCCTA
66 TTCTTGCGAAAATCAAAGAATCAATATCATGCATCCCAATCAAGAGAGCATGTTGTGGCTACCTA
*
4733184 GTCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTACTATTTGACAGATAAACATTGC
131 ATCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTACTATTTGACAGATAAACATTGC
* * * * * *
4733249 TTTAAGGAAATAAGTGGCAAGAAAAATTTTTCTTTCATTACCAATACATCAATATTGTGCATCCT
196 GTTAAGGAAAAAAGTGGCAAGAAAAATTTTTCTTGCATAACCAATACATCAATATTATGCATCCC
* * *
4733314 AAAGAAGATAATGTGTTTATGGTGCCTAATCATTGAAAGAATAAAGAAAAACTTTTCTTTCATTA
261 AAAGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAAAACAAAGAAAAACTTTTCTTTCATTA
4733379 CC
326 CC
* *
4733381 AATCCATCTTTGACTCTTTTAAGGGATAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
1 AATCCATCTTTGACTCTCTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
* * *
4733446 TTCTTGCGAAAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGCATGTTTTGGCTACCTA
66 TTCTTGCGAAAATCAAAGAATCAATATCATGCATCCCAATCAAGAGAGCATGTTGTGGCTACCTA
* * ** * *
4733511 ATCAC-AATATAATGGAGATTATTACAAGAATCTGTTTTTGT-CTTATTTGAC-GAATGAACTTT
131 ATCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTAC-TATTTGACAG-ATAAACATT
*
4733573 GCGTTAAGGAAAAAAGTGGCAAG-AAAATCTTTTCTTGCATAACCAATGCATCAATATTATGCAT
194 GCGTTAAGGAAAAAAGTGGCAAGAAAAAT-TTTTCTTGCATAACCAATACATCAATATTATGCAT
4733637 CCCAAAGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAAAACAAAGA
258 CCCAAAGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAAAACAAAGA
4733687 TTATTGCGTA
Statistics
Matches: 274, Mismatches: 29, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
325 7 0.03
326 145 0.53
327 122 0.45
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (327 bp):
AATCCATCTTTGACTCTCTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
TTCTTGCGAAAATCAAAGAATCAATATCATGCATCCCAATCAAGAGAGCATGTTGTGGCTACCTA
ATCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTACTATTTGACAGATAAACATTGC
GTTAAGGAAAAAAGTGGCAAGAAAAATTTTTCTTGCATAACCAATACATCAATATTATGCATCCC
AAAGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAAAACAAAGAAAAACTTTTCTTTCATTA
CC
Found at i:4738550 original size:159 final size:159
Alignment explanation
Indices: 4738208--4738543 Score: 451
Period size: 159 Copynumber: 2.1 Consensus size: 159
4738198 TTGACTAATG
* * * *
4738208 AACTTTGCTT-TAACGAAATAAGTGGCAAGACATACTTTTCTTGCATAACCAATGCATCAATATT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGACAAACTTTTCATGCATAACCAATGCATCAATATT
* * * *
4738272 ATGCATCCCATAGAAGATAACATGTTTATGGTGCCGAATCATTGATAGAAAGAAGATCATTCCGT
66 ATGCATCCCAAAGAACATAACATGTTTATGGTGCCCAATCATTGAAAGAAAGAAGATCATTCCGT
* **
4738337 AAATCCATGTTTGTCTCAGTTAAGGTATA
131 AAAGCCACATTTGTCTCAGTTAAGGTATA
* * *
4738366 AACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCATGCATAAGCAATGCATCAATATT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGACAAACTTTTCATGCATAACCAATGCATCAATATT
* * * * * * **
4738431 TTGCATCCTAAAGAACATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGTGT
66 ATGCATCCCAAAGAACATAACATGTTTATGGTGCCCAATCATTGAAAGAAAGAAGATCATTCCGT
4738496 AAAGCCACATTTGTCTTCA-TTAAGGTATA
131 AAAGCCACATTTGTC-TCAGTTAAGGTATA
4738525 AACTTTGATTCTAAGGAAA
1 AACTTTGATTCTAAGGAAA
4738544 ACAGTGGAGA
Statistics
Matches: 154, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 9 0.06
159 142 0.92
160 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (159 bp):
AACTTTGATTCTAAGGAAATAAGTGGCAAGACAAACTTTTCATGCATAACCAATGCATCAATATT
ATGCATCCCAAAGAACATAACATGTTTATGGTGCCCAATCATTGAAAGAAAGAAGATCATTCCGT
AAAGCCACATTTGTCTCAGTTAAGGTATA
Found at i:4738588 original size:159 final size:159
Alignment explanation
Indices: 4738208--4738588 Score: 394
Period size: 159 Copynumber: 2.4 Consensus size: 159
4738198 TTGACTAATG
* * * * * * * * *
4738208 AACTTTGCTT-TAACGAAATAAGTGGCAAGACATACTTTTCTTGCATAACCAATGCATCAATATT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGAAAAACTTTTCATACAAAAGCAAAGCATCAATATT
* * * *
4738272 ATGCATCCCATAGAAGATAACATGTTTATGGTGCCGAATCATTGATAGAAAGAAGATCATTCCGT
66 ATGCATCCCAAAGAACATAACATGTTTATGGTGCCCAATCATTGAAAGAAAGAAGATCATTCCGT
* **
4738337 AAATCCATGTTTGTCTCAGTTAAGGTATA
131 AAAGCCACATTTGTCTCAGTTAAGGTATA
* * * * *
4738366 AACTTTGATTCTAAGGAAATAAGTGGCAAGAGAAATTTTTCATGCATAAGCAATGCATCAATATT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGAAAAACTTTTCATACAAAAGCAAAGCATCAATATT
* * * * * * **
4738431 TTGCATCCTAAAGAACATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGTGT
66 ATGCATCCCAAAGAACATAACATGTTTATGGTGCCCAATCATTGAAAGAAAGAAGATCATTCCGT
4738496 AAAGCCACATTTGTCTTCA-TTAAGGTATA
131 AAAGCCACATTTGTC-TCAGTTAAGGTATA
* * * *
4738525 AACTTTGATTCTAAGGAAA-ACAGTGG--AGAAAAAACCTTTTCTTATAAAATCAAAGCATTAAT
1 AACTTTGATTCTAAGGAAATA-AGTGGCAAG-AAAAA-CTTTTCATACAAAAGCAAAGCATCAAT
4738587 AT
63 AT
4738589 CGTGTATCTC
Statistics
Matches: 187, Mismatches: 31, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 14 0.07
159 168 0.90
160 3 0.02
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (159 bp):
AACTTTGATTCTAAGGAAATAAGTGGCAAGAAAAACTTTTCATACAAAAGCAAAGCATCAATATT
ATGCATCCCAAAGAACATAACATGTTTATGGTGCCCAATCATTGAAAGAAAGAAGATCATTCCGT
AAAGCCACATTTGTCTCAGTTAAGGTATA
Found at i:4739460 original size:318 final size:317
Alignment explanation
Indices: 4739012--4739652 Score: 881
Period size: 318 Copynumber: 2.0 Consensus size: 317
4739002 GCAAAAAGAA
** * *
4739012 CTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAAAAGATGCCGTGTTTGTGGTGCC
1 CTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAAAAGATAACGTGTTTATAGTGCC
* * * *
4739077 AATCATTGAAAGAATGGATATTATTAAGCAAATCCATGTTTGTCTCATTTAATGTATAAACTTTG
66 AATCATTGAAAGAATAGAGATTATTAAGCAAATCCATGTTTGCCTCATTTAAGGTATAAACTTTG
* * * *
4739142 ATTCCAAGGAAAACGGTGGAGAAAAAAACTTTTCTAATGAAATCAAAGCATTAATATCGTGTATC
131 ATTCCAAGCAAAACAGTGGAGAAAAAAACTTTTCTAATGAAATCAAAGCATTAATAACGAGTATC
*
4739207 ACAATAAGGAGAACGTGTTTTGGA-TGCCTAATCATGAAAAGAATGAAGTTTATTATAAGAATAA
196 ACAATAAGGAGAACGTGTTTT-GATTGCCTAATCATGAAAAGAATGAAGATTATTATAAGAATAA
4739271 ATGTTTATTTCATTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAA-GAAAAG
260 ATGTTTATTTCATTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAACG-AAAG
* * * *** ***
4739329 CTTTTCTTGCATAACCAGTGCGTCAATATTGTGCCTTTTAGTGAAGATAACGTGTTTATAGTGCC
1 CTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAAAAGATAACGTGTTTATAGTG-C
** * *
4739394 CAATCATTGAAAGAATAGAGATTATTGCGTAAATCCATGTTTGCCTCATTTAAGGTATAGACTTT
65 CAATCATTGAAAGAATAGAGATTATTAAGCAAATCCATGTTTGCCTCATTTAAGGTATAAACTTT
* * *
4739459 GATTCTAAGCAAAACAGTGGAGAAAAAAATTTTTCTTATGAAATCAAAGCATTAATAACGAGTAT
130 GATTCCAAGCAAAACAGTGGAGAAAAAAACTTTTCTAATGAAATCAAAGCATTAATAACGAGTAT
* * * * **
4739524 CCCTATAAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCC
195 CACAATAAGGAGAACGTGTTTTGATTGCCTAATCATGAAAAGAATGAAGATTATTATAAGAATAA
* * * * *
4739589 ATGTTTGTTTCATTTGACTTATGAACTCAAATTATAAGGAAAATCATGGCAACGAAAG
260 ATGTTTATTTCATTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAACGAAAG
4739647 CTTTTC
1 CTTTTC
4739653 CTATATAATC
Statistics
Matches: 281, Mismatches: 40, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
317 52 0.19
318 228 0.81
319 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (317 bp):
CTTTTCTTGCATAACCAATGCATCAATATTGTGCATCCCAAAAAAGATAACGTGTTTATAGTGCC
AATCATTGAAAGAATAGAGATTATTAAGCAAATCCATGTTTGCCTCATTTAAGGTATAAACTTTG
ATTCCAAGCAAAACAGTGGAGAAAAAAACTTTTCTAATGAAATCAAAGCATTAATAACGAGTATC
ACAATAAGGAGAACGTGTTTTGATTGCCTAATCATGAAAAGAATGAAGATTATTATAAGAATAAA
TGTTTATTTCATTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAACGAAAG
Found at i:4740113 original size:159 final size:158
Alignment explanation
Indices: 4739906--4740241 Score: 460
Period size: 159 Copynumber: 2.1 Consensus size: 158
4739896 TTGACGAGTG
* *
4739906 AACTTTGCTT-TAACGAAATAAGTGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATAAT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAGAAATA-TTTTCTTGCATAACCAATGCATCAATAAT
* * * * * * *
4739970 GTGCATCCTAAGGAAGATAACATGTTTATGGTGCCGAATCTTTGATAGAATGGAGATCATTTCGT
65 GTGCATCCCAAAGAAGATAACATGATTATGGTGCCCAATCATTGAAAGAATGGAGATCATTGCGT
* **
4740035 GAATCCATGTTTGTCTAAGTTAAGGTATA
130 AAATCCACATTTGTCTAAGTTAAGGTATA
* *
4740064 AACTTTGATTCTAAGGAAATAAGTGGCAAGGGAAAT-TTTTCTTGCATAACCAATGCGTCAATAT
1 AACTTTGATTCTAAGGAAATAAGTGGCAA--GAAATATTTTCTTGCATAACCAATGCATCAATAA
* * *
4740128 TTTGCATCCCAAAGAAGATAACGTGATTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCG
64 TGTGCATCCCAAAGAAGATAACATGATTATGGTGCCCAATCATTGAAAGAATGGAGATCATTGCG
**
4740193 TAAATCCACATTTGTCTTTGTTAAGGTATA
129 TAAATCCACATTTGTCTAAGTTAAGGTATA
4740223 AACTTTGATTCTAAGGAAA
1 AACTTTGATTCTAAGGAAA
4740242 ACGGTGGAGA
Statistics
Matches: 156, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
158 9 0.06
159 142 0.91
161 5 0.03
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.32
Consensus pattern (158 bp):
AACTTTGATTCTAAGGAAATAAGTGGCAAGAAATATTTTCTTGCATAACCAATGCATCAATAATG
TGCATCCCAAAGAAGATAACATGATTATGGTGCCCAATCATTGAAAGAATGGAGATCATTGCGTA
AATCCACATTTGTCTAAGTTAAGGTATA
Found at i:4740296 original size:159 final size:158
Alignment explanation
Indices: 4739906--4740298 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 158
4739896 TTGACGAGTG
* * * * *
4739906 AACTTTGCTT-TAACGAAATAAGTGGCAAGAAATACTTTTCTTGCATAACCAATGCATCAATAAT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAAAAAAACTTTTCTT-CATAACCAAAGCATCAAT-AT
* * * * * * *
4739970 -GTGCATCCTAAGGAAGATAACATGTTTATGGTGCCGAATCTTTGATAGAATGGAGATCATTTCG
64 CGTGCATCCCAAAGAAGATAACATGATTATGGTGCCCAATCATTGAAAGAATGGAGATCATTGCG
* **
4740034 TGAATCCATGTTTGTCTAAGTTAAGGTATA
129 TAAATCCACATTTGTCTAAGTTAAGGTATA
*** * * * *
4740064 AACTTTGATTCTAAGGAAATAAGTGGCAAGGGAAATTTTTCTTGCATAACCAATGCGTCAATATT
1 AACTTTGATTCTAAGGAAATAAGTGGCAAAAAAAACTTTTCTT-CATAACCAAAGCATCAATATC
* * *
4740129 TTGCATCCCAAAGAAGATAACGTGATTATGGTGCCCAATCATTGAAAGAATGGAGATTATTGCGT
65 GTGCATCCCAAAGAAGATAACATGATTATGGTGCCCAATCATTGAAAGAATGGAGATCATTGCGT
**
4740194 AAATCCACATTTGTCTTTGTTAAGGTATA
130 AAATCCACATTTGTCTAAGTTAAGGTATA
* ** *
4740223 AACTTTGATTCTAAGGAAA-ACGGTGG-AGAAAAAAACTTTTCTT-ATGAGATTAAAGCATTAAT
1 AACTTTGATTCTAAGGAAATA-AGTGGCA-AAAAAAACTTTTCTTCAT-A-ACCAAAGCATCAAT
*
4740285 ATCGTGTATCCCAA
62 ATCGTGCATCCCAA
4740299 TAAGGAAAAT
Statistics
Matches: 194, Mismatches: 35, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 14 0.07
159 178 0.92
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (158 bp):
AACTTTGATTCTAAGGAAATAAGTGGCAAAAAAAACTTTTCTTCATAACCAAAGCATCAATATCG
TGCATCCCAAAGAAGATAACATGATTATGGTGCCCAATCATTGAAAGAATGGAGATCATTGCGTA
AATCCACATTTGTCTAAGTTAAGGTATA
Found at i:4742732 original size:13 final size:13
Alignment explanation
Indices: 4742714--4742739 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4742704 CAATTTTTTG
4742714 TGTATCGATACAT
1 TGTATCGATACAT
4742727 TGTATCGATACAT
1 TGTATCGATACAT
4742740 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4742751 original size:32 final size:33
Alignment explanation
Indices: 4742694--4742757 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
4742684 TACAAGCCAA
**
4742694 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
4742727 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
4742758 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:4742862 original size:20 final size:20
Alignment explanation
Indices: 4742809--4742864 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
4742799 ACATCTTTTT
*
4742809 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
4742829 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
4742848 CTGTGTATCGATACTTT
1 C-ATGTATCGATACTTT
4742865 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:4745302 original size:13 final size:13
Alignment explanation
Indices: 4745284--4745308 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4745274 ATAATCCCCC
4745284 TGTATCGATACAT
1 TGTATCGATACAT
4745297 TGTATCGATACA
1 TGTATCGATACA
4745309 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4747411 original size:15 final size:15
Alignment explanation
Indices: 4747391--4747421 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4747381 ATTTCGTTTG
*
4747391 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
4747406 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
4747421 G
1 G
4747422 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:4751502 original size:13 final size:13
Alignment explanation
Indices: 4751484--4751509 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4751474 CAATTTTTTG
4751484 TGTATCGATACAT
1 TGTATCGATACAT
4751497 TGTATCGATACAT
1 TGTATCGATACAT
4751510 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4751521 original size:32 final size:33
Alignment explanation
Indices: 4751464--4751527 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
4751454 TACAAGCCAA
**
4751464 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
4751497 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
4751528 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:4751632 original size:20 final size:20
Alignment explanation
Indices: 4751579--4751634 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
4751569 ACATCTTTTT
*
4751579 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
4751599 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
4751618 CTGTGTATCGATACTTT
1 C-ATGTATCGATACTTT
4751635 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:4758042 original size:27 final size:27
Alignment explanation
Indices: 4758004--4758060 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
4757994 GAATAGCACT
*
4758004 AATACCTATCTAAAAAGCATTGCATTC
1 AATACCTATCTAAAAAGCATTGCAATC
4758031 AATACCTATCTAAAAAGCATTGCAATC
1 AATACCTATCTAAAAAGCATTGCAATC
4758058 AAT
1 AAT
4758061 CTCAAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AATACCTATCTAAAAAGCATTGCAATC
Found at i:4760541 original size:81 final size:80
Alignment explanation
Indices: 4760414--4760564 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 80
4760404 AAACAAGGAC
* * *
4760414 AATCCTATCCAATAAGAAAAAGTCTATCCCTTATCCTAATCTGATTAGGACTTATCTAAA-TAAC
1 AATCCTATCCAATAAGAAAAAGTCTATCCCTTATCATAATCTGATTAGAAATTATCTAAACTAA-
4760478 TTAAAATACTAAACAT
65 TTAAAATACTAAACAT
* * *
4760494 AATCCTAAT-CAATAAGGATAAAGTCTA-CCCATTATTATAATTTGATTAGAAATTATCTAAACT
1 AATCCT-ATCCAATAA-GAAAAAGTCTATCCC-TTATCATAATCTGATTAGAAATTATCTAAACT
4760557 AATTAAAA
63 AATTAAAA
4760565 ATAAAAAGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
80 15 0.25
81 43 0.70
82 3 0.05
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (80 bp):
AATCCTATCCAATAAGAAAAAGTCTATCCCTTATCATAATCTGATTAGAAATTATCTAAACTAAT
TAAAATACTAAACAT
Found at i:4762074 original size:13 final size:13
Alignment explanation
Indices: 4762056--4762080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4762046 TTCTACAATT
4762056 TGTATCGATACAA
1 TGTATCGATACAA
4762069 TGTATCGATACA
1 TGTATCGATACA
4762081 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4775107 original size:79 final size:79
Alignment explanation
Indices: 4774997--4775203 Score: 220
Period size: 79 Copynumber: 2.6 Consensus size: 79
4774987 GAGATAATAA
* * * * * *
4774997 CGGGGTTGGAGTGTCCCCTTGAAAATGACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGATGGAGTATCCCCGATTATGAGAAATCGAT-A
4775062 -TTAGAAAAAAACAT-
65 TTTAGAAAAAAA-ATC
* * ** *
4775076 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCTAATTATGAGAAATTGATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGATGGAGTATCCCCGATTATGAGAAATCGATAT
* ** *
4775141 TTTGGGAATAAATC
66 TTAGAAAAAAAATC
* **
4775155 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGATGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGATGGAGTATCCCCGAT
4775204 GAAATAACGA
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
78 3 0.03
79 102 0.97
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGATGGAGTATCCCCGATTATGAGAAATCGATAT
TTAGAAAAAAAATC
Found at i:4775212 original size:107 final size:109
Alignment explanation
Indices: 4775077--4775280 Score: 276
Period size: 107 Copynumber: 1.9 Consensus size: 109
4775067 AAAAAACATC
* *
4775077 GGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCC-CTAATTATGAGAAATTGATA-
1 GGGATTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCTC-AATTATGAAAAATTGATAT
* *
4775140 TTTTGGGAAT-AAATCCGGGGTTGGAGTATCCCCTCGGAGGTAACG
65 TTTTGGAAATAAAAT-CGGAGTTGGAGTATCCCCTCGGAGGTAACG
* *
4775185 GGGA-TGGAGTAT-CCC-CGATGAAATAACGAGGTTGGAGTATCCTCAATTGTGAAAAATTGGTA
1 GGGATTGGAGTATCCCCTCGA--AAATAACGAGGTTGGAGTATCCTCAATTATGAAAAATTGATA
4775247 TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
64 TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
4775281 GATTAAAGGA
Statistics
Matches: 85, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
105 3 0.04
106 3 0.04
107 44 0.52
108 31 0.36
109 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (109 bp):
GGGATTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCTCAATTATGAAAAATTGATATT
TTTGGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAGGTAACG
Found at i:4775372 original size:51 final size:50
Alignment explanation
Indices: 4775214--4775383 Score: 171
Period size: 52 Copynumber: 3.3 Consensus size: 50
4775204 GAAATAACGA
* * * * *
4775214 GGTTGGAGTATCCTCAATTGTGAAAAATTGGTAT-TTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGATTGTGGAAAA-TCG-ATGTTTTGGAAATAAAACCG
** * * * *
4775265 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGG
1 G-GTTGGAGTATCCCCGATT-GTGGAAAATCGATGTTTTGGAAATAAAACC-G
*
4775318 GGTTGGAGTATCCCCGATTGTGGAAAATCGATGATTTGGAAATAAAACCAG
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAACC-G
4775369 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
4775384 TCGGAGATAA
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
51 41 0.42
52 49 0.51
53 7 0.07
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAACCG
Found at i:4775481 original size:80 final size:79
Alignment explanation
Indices: 4775315--4775494 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 79
4775305 AAAATAAAGC
* * *
4775315 CGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGATTTGGAAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATCAATGATTTAGAAATAAAACCAGGGTTGGAGTAT
* *
4775380 CCCCTCGGAGATAA
66 CCCCTCGAAAATAA
* * * **
4775394 CGAGGTTGGAGTATCCCCGATTAT-GAGAAATTAAT-ATTTTAGAAATAAAGTCGGGGGTTGGAG
1 CGGGGTTGGAGTATCCCCGATTATGGA-AAATCAATGA-TTTAGAAATAAA-ACCAGGGTTGGAG
4775457 TATCCCCTCGAAAATAA
63 TATCCCCTCGAAAATAA
4775474 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
4775495 GATTAACGGG
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.03
79 39 0.45
80 45 0.52
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGGAAAATCAATGATTTAGAAATAAAACCAGGGTTGGAGTAT
CCCCTCGAAAATAA
Found at i:4775509 original size:27 final size:27
Alignment explanation
Indices: 4775447--4775524 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
4775437 AATAAAGTCG
*
4775447 GGGGTTGGAGTATCCCCTCGA-AAATAAC
1 GGGGTTGGAGTAT-CCC-CGATGAATAAC
*
4775475 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGATGAATAAC
4775502 GGGGTTGGAGTATCCCCGATGAA
1 GGGGTTGGAGTATCCCCGATGAA
4775525 AAATTGATGT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 3 0.07
27 30 0.65
28 13 0.28
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.23
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATGAATAAC
Found at i:4775600 original size:51 final size:49
Alignment explanation
Indices: 4775505--4775622 Score: 136
Period size: 51 Copynumber: 2.4 Consensus size: 49
4775495 GATTAACGGG
4775505 GTTGGAGTATCCCCGA-TGAAAAATTGATGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAAAAATTGATGTTTTAGAAATAAAATCGGA
* *
4775553 GTTGGAGTATCCCCGATTATAGAAAATT-AGTGTTTT-GAAAATGAAATCGGA
1 GTTGGAGTATCCCCGATT-GA-AAAATTGA-TGTTTTAG-AAATAAAATCGGA
*
4775604 GTTGG-GATATCCTCGATTG
1 GTTGGAG-TATCCCCGATTG
4775623 CGGAGAATTA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
48 16 0.27
49 1 0.02
50 4 0.07
51 39 0.65
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (49 bp):
GTTGGAGTATCCCCGATTGAAAAATTGATGTTTTAGAAATAAAATCGGA
Found at i:4777923 original size:13 final size:13
Alignment explanation
Indices: 4777905--4777930 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4777895 CAAAGAATAG
4777905 ATGTATCGATACA
1 ATGTATCGATACA
4777918 ATGTATCGATACA
1 ATGTATCGATACA
4777931 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4777927 original size:34 final size:33
Alignment explanation
Indices: 4777884--4777950 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
4777874 AACTTCCTAG
*
4777884 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
4777918 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
4777951 TTCCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:4777991 original size:13 final size:13
Alignment explanation
Indices: 4777973--4777997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4777963 TAGCTAATTA
4777973 TGTATCGATACAT
1 TGTATCGATACAT
4777986 TGTATCGATACA
1 TGTATCGATACA
4777998 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4778879 original size:55 final size:55
Alignment explanation
Indices: 4778796--4779764 Score: 977
Period size: 55 Copynumber: 17.0 Consensus size: 55
4778786 ATAAAGCGTA
* * * *
4778796 TCCTGCTCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTT-GAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
4778851 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTA-AGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
*
4778906 TCCTGCTCTTTGA-G---G--A-TGCCACCAACTTGTGTGGGCTTT-GAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* * *
4778953 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGC-TTCGAAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* * *
4779008 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----AG-AAAGGCG
* * * *
4779069 TCCTACTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
** *
4779128 TCCCACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* *
4779187 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCG
* *
4779248 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
4779303 TCCTGCTCTTTGGGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* *
4779363 TCCCGCTCTTTGAGGACT-AGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
*
4779422 TCCCGCTCTTTGAGGACTGGGAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT--GAAAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCG
*
4779483 TCCTGCTCTTTGAGGACTGGAAA-TGCCACCAACTTGTGTGGGCTTTA-AAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
4779537 TCCTGCTCTTTAAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* *
4779597 T-CTCGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCG
1 TCCT-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCG
* *
4779658 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
*
4779713 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTA-AAAGG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGG
4779765 AAAAGGCATC
Statistics
Matches: 813, Mismatches: 55, Indels: 93
0.85 0.06 0.10
Matches are distributed among these distances:
47 42 0.05
48 1 0.00
49 1 0.00
51 1 0.00
52 1 0.00
53 4 0.00
54 67 0.08
55 213 0.26
56 4 0.00
57 1 0.00
58 4 0.00
59 142 0.17
60 178 0.22
61 151 0.19
62 3 0.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
Found at i:4779110 original size:60 final size:59
Alignment explanation
Indices: 4778922--4779787 Score: 1029
Period size: 60 Copynumber: 14.9 Consensus size: 59
4778912 TCTTTGAGGA
* **
4778922 TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
* * *
4778977 TGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* * *
4779032 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * **
4779092 TGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCATCCCACTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* **
4779151 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
*
4779211 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
* *
4779272 TGCCACCAACTTGTGTGGGCTTTAAAAG----GG-GTCCTGCTCTTTGGGGACGGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* *
4779327 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGGACT-AGAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AGG
* *
4779386 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGGAA-A
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
* *
4779446 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGAA-A
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
* *
4779506 TGCCACCAACTTGTGTGGGCTTTAAAAG----GG-GTCCTGCTCTTTAAGGACGGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* **
4779561 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGT-CTCGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT-GCTCTTTGAGGACT-GAAGG
* *
4779621 TGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
*
4779682 TGCCACCAACTTGTGTGGGCTTT-----AAAAGGTGTCCTGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
*
4779736 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGG
4779788 GCTAAAAAGC
Statistics
Matches: 721, Mismatches: 48, Indels: 79
0.85 0.06 0.09
Matches are distributed among these distances:
53 5 0.01
54 48 0.07
55 164 0.23
56 4 0.01
58 1 0.00
59 148 0.21
60 195 0.27
61 145 0.20
62 11 0.02
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (59 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
Found at i:4779379 original size:235 final size:230
Alignment explanation
Indices: 4778796--4779764 Score: 1248
Period size: 235 Copynumber: 4.2 Consensus size: 230
4778786 ATAAAGCGTA
** * * *
4778796 TCCTGCTCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
* * *
4778861 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTGTCCTGCTCTTTGA-G
65 TGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGG
* *
4778920 ---G-A--TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTGGA
130 ACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGA
* *
4778974 AAATGCCACCAACTTGTGTGGGC-TT-CGAAAGGGG
195 AAATGCCACCAACTTGTGTGGGCTTTAGGAAAGGCG
* *
4779008 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG-----GCATCCT
* * * * * *
4779073 ACTCTTTGAGGACTG-AAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCATCCCACTCT
59 GCTCTTTGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCT
4779137 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGG
124 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGG
4779202 ACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
189 ACTGGAAAATGCCACCAACTTGTGTGGGCTTT---AGGA-AAGGCG
**
4779248 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
*
4779313 TGGGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGG
65 TGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGG
4779378 ACT-AGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGG
130 ACTGA-AGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGG
*
4779442 GAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
194 AAAATGCCACCAACTTGTGTGGGCTTT---AGGA-AAGGCG
* **
4779483 TCCTGCTCTTTGAGGACTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTT
1 TCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
* *
4779548 AAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCTCGCTCTTTGAGGA
66 GAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGGA
** * * *
4779613 CTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGG
131 CT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCCGCTCTTTGAGGACTGG
* * *
4779678 GAAGTGCCACCAACTTGTGTGGGCTTTA--AAAGGTG
194 AAAATGCCACCAACTTGTGTGGGCTTTAGGAAAGGCG
4779713 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGG
4779765 AAAAGGCATC
Statistics
Matches: 681, Mismatches: 39, Indels: 56
0.88 0.05 0.07
Matches are distributed among these distances:
211 3 0.00
212 39 0.06
213 4 0.01
217 26 0.04
218 21 0.03
219 3 0.00
222 14 0.02
223 1 0.00
226 1 0.00
227 1 0.00
229 26 0.04
230 52 0.08
231 1 0.00
233 2 0.00
234 177 0.26
235 200 0.29
236 54 0.08
239 7 0.01
240 46 0.07
241 3 0.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (230 bp):
TCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
GAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGGA
CTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAA
AATGCCACCAACTTGTGTGGGCTTTAGGAAAGGCG
Found at i:4779577 original size:175 final size:174
Alignment explanation
Indices: 4778796--4779787 Score: 1173
Period size: 175 Copynumber: 5.7 Consensus size: 174
4778786 ATAAAGCGTA
** * * * **
4778796 TCCTGCTCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTT
* *
4778861 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTGTCCTGCTCTTT---G
65 TGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGG
*
4778918 A---GG--ATGCCACCAACTTGTGTGGGCTTT----GA-AAGGTG
130 ACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
**
4778953 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGG-AAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTT
* * * * *
4779018 TGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAG
65 TGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAG
* * * *
4779083 GACT--GAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCA
129 GACTGGGAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
** * *
4779128 TCCCACTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACTGGAA-ATGCCACCAACTTGTGTGGGCTTTAAAAG----GG-GTCCTG
* *
4779192 CTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
60 CTCTTTGAGGAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTC
*
4779256 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAA-AG--GG-G
123 TTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * *
4779303 TCCTGCTCTTTGGGGAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
1 TCCTGCTCTTTGAGGACTGGAAA--TGCCACCAACTTGTGTGGGCTTT-----AAAAGGGGTCCT
* * *
4779367 GCTCTTTGAGGAC-TAGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCT
59 GCTCTTTGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
4779431 TTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
124 TTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
4779483 TCCTGCTCTTTGAGGACTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTT
1 TCCTGCTCTTTGAGGACTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTT
* *
4779548 AAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGT-CTCGCTCTTTGAGG
66 GAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT-GCTCTTTGAGG
* *
4779612 ACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCG
130 ACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
* *
4779658 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTT
* *
4779723 TGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAG
65 TGAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAG
4779787 G
129 G
4779788 GCTAAAAAGC
Statistics
Matches: 725, Mismatches: 59, Indels: 83
0.84 0.07 0.10
Matches are distributed among these distances:
157 90 0.12
158 3 0.00
160 3 0.00
163 12 0.02
166 2 0.00
167 1 0.00
170 22 0.03
173 2 0.00
174 107 0.15
175 210 0.29
176 114 0.16
177 5 0.01
178 7 0.01
179 90 0.12
180 44 0.06
181 13 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (174 bp):
TCCTGCTCTTTGAGGACTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTT
GAGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGA
CTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
Found at i:4779616 original size:410 final size:403
Alignment explanation
Indices: 4778800--4779795 Score: 1322
Period size: 410 Copynumber: 2.5 Consensus size: 403
4778790 AGCGTATCCT
* * * *
4778800 GCTCTTTGAGGACT-AAAAAGTGCCACTAACTCGTGTGGGCTTT-----GA-AAGGCATCCTGCT
1 GCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCT
* *
4778858 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTT--GA-
65 CTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGAC
* *
4778919 GG-A--TGCCACCAACTTGTGTGGGCTTT---G-AAAGGTGTCCTGCTCTTTGAGGACTGGAAAA
129 GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAA
* * * *
4778977 TGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAAC
194 TGCCACCAACTTGTGTGGGCTTAGAAAGGCGTCCCGCTCTTTGAGGACTGAAA-GTGCCACCAAC
*
4779042 TTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAGGACTGAAGGTGCCACCAACTTGGG
258 TTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAGGACTGAAGATGCCACCAACTTGGG
* *
4779107 TGGGCTTTAAAAGAAAAGGCATCCCACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCT
323 TGGGCTTTAAAAG---AGGCATCCCACTCTTTAAGGACGGAAGGTGCCACCAACTTGTGTGGGCT
4779172 TTAAAAGAAAAGGCGTCCC
385 TTAAAAGAAAAGGCGTCCC
4779191 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
1 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
*
4779256 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTTGGGGACG
66 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTT-GGGACG
* *
4779321 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGGACTAG-AG
130 G-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAA
*
4779385 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGGAAA-TGC
193 ATGCCACCAACTTGTGTGGGC-TT---AG-AAAGGCGTCCCGCTCTTTGAGGACT--GAAAGTGC
* * * *
4779449 CACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGAA-ATGCCAC
251 CACCAACTTGTGTGGGCTTTGAAAA-GAAAAAGCATCCTACTCTTTGAGGACT-GAAGATGCCAC
* * **
4779512 CAACTTGTGTGGGCTTTAAAAG-GG-GTCCTGCTCTTTAAGGACGGAAAGGTGCCACCAACTTGT
314 CAACTTGGGTGGGCTTTAAAAGAGGCATCCCACTCTTTAAGGACGG-AAGGTGCCACCAACTTGT
* *
4779575 GTGGGCTTTGAAAGAAAAGGCGTCTC
378 GTGGGCTTTAAAAGAAAAGGCGTCCC
*
4779601 GCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
1 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
*
4779666 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACT
66 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTG-GGACG
* *
4779731 GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGGCTA-AAA
130 GAAGGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAA
4779795 A
193 A
4779796 GCGGAAGGAG
Statistics
Matches: 533, Mismatches: 38, Indels: 49
0.86 0.06 0.08
Matches are distributed among these distances:
391 35 0.07
392 4 0.01
396 2 0.00
397 64 0.12
398 3 0.01
400 2 0.00
401 2 0.00
403 1 0.00
405 23 0.04
409 68 0.13
410 222 0.42
413 5 0.01
414 95 0.18
415 3 0.01
416 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (403 bp):
GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGACGG
AAGGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATG
CCACCAACTTGTGTGGGCTTAGAAAGGCGTCCCGCTCTTTGAGGACTGAAAGTGCCACCAACTTG
TGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAGGACTGAAGATGCCACCAACTTGGGTGG
GCTTTAAAAGAGGCATCCCACTCTTTAAGGACGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
GAAAAGGCGTCCC
Found at i:4780768 original size:1 final size:1
Alignment explanation
Indices: 4780758--4780839 Score: 74
Period size: 1 Copynumber: 82.0 Consensus size: 1
4780748 CTTAAGCAGA
* * * * * * * *
4780758 TTTTTCTTTTTTTTTTCTTTTTTCTTTGTTTTGTTTTTTTTTTTTTGTTTTTTTTGTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
4780823 TTTATTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTT
4780840 GAAAAAGAAT
Statistics
Matches: 61, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.88
Consensus pattern (1 bp):
T
Found at i:4780801 original size:23 final size:22
Alignment explanation
Indices: 4780757--4780839 Score: 87
Period size: 22 Copynumber: 3.6 Consensus size: 22
4780747 GCTTAAGCAG
*
4780757 ATTTTTCTTTTTTTTTTCTTTTTT
1 ATTTTT-TTGTTTTTTT-TTTTTT
*
4780781 CTTTGTTTTGTTTTTTTTTTTTT
1 ATTT-TTTTGTTTTTTTTTTTTT
* *
4780804 GTTTTTTT-TGTTGTTTTTTTTT
1 ATTTTTTTGT-TTTTTTTTTTTT
4780826 ATTTTTTTGTTTTT
1 ATTTTTTTGTTTTT
4780840 GAAAAAGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
21 1 0.02
22 25 0.50
23 10 0.20
24 12 0.24
25 2 0.04
ACGTcount: A:0.02, C:0.04, G:0.07, T:0.87
Consensus pattern (22 bp):
ATTTTTTTGTTTTTTTTTTTTT
Found at i:4780802 original size:31 final size:30
Alignment explanation
Indices: 4780758--4780839 Score: 112
Period size: 30 Copynumber: 2.7 Consensus size: 30
4780748 CTTAAGCAGA
* * *
4780758 TTTTTCTTTTTTTTTTCTTTTTTCT-TTGT
1 TTTTTTTTTTTTTTTTGTTTTTTTTGTTGT
4780787 TTTGTTTTTTTTTTTTTGTTTTTTTTGTTGT
1 TTT-TTTTTTTTTTTTTGTTTTTTTTGTTGT
*
4780818 TTTTTTTTATTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTGTTTTT
4780840 GAAAAAGAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
29 3 0.06
30 37 0.79
31 7 0.15
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.88
Consensus pattern (30 bp):
TTTTTTTTTTTTTTTTGTTTTTTTTGTTGT
Found at i:4784819 original size:13 final size:13
Alignment explanation
Indices: 4784801--4784826 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4784791 AATTTTTTTG
4784801 TGTATCGATACAT
1 TGTATCGATACAT
4784814 TGTATCGATACAT
1 TGTATCGATACAT
4784827 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4789475 original size:15 final size:15
Alignment explanation
Indices: 4789455--4789485 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4789445 ATTTCGTTTG
*
4789455 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
4789470 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
4789485 G
1 G
4789486 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:4791307 original size:21 final size:21
Alignment explanation
Indices: 4791278--4791322 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4791268 AAGTTTTTAT
*
4791278 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
4791298 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
4791320 TTT
1 TTT
4791323 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:4795104 original size:20 final size:20
Alignment explanation
Indices: 4795079--4795143 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
4795069 TAGTAACCCA
4795079 TGTATCGATACAAGGAATAT
1 TGTATCGATACAAGGAATAT
4795099 TGTATCGATAC-----A-A-
1 TGTATCGATACAAGGAATAT
*
4795112 TGTATCGATACAAGGAATTT
1 TGTATCGATACAAGGAATAT
4795132 TGTATCGATACA
1 TGTATCGATACA
4795144 TCGATACAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
20 23 0.62
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAAGGAATAT
Found at i:4795117 original size:13 final size:13
Alignment explanation
Indices: 4795099--4795124 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4795089 CAAGGAATAT
4795099 TGTATCGATACAA
1 TGTATCGATACAA
4795112 TGTATCGATACAA
1 TGTATCGATACAA
4795125 GGAATTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4795120 original size:33 final size:33
Alignment explanation
Indices: 4795078--4795143 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
4795068 ATAGTAACCC
4795078 ATGTATCGATACAAGGAATATTGTATCGATACA
1 ATGTATCGATACAAGGAATATTGTATCGATACA
*
4795111 ATGTATCGATACAAGGAATTTTGTATCGATACA
1 ATGTATCGATACAAGGAATATTGTATCGATACA
4795144 TCGATACAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAAGGAATATTGTATCGATACA
Found at i:4795158 original size:21 final size:21
Alignment explanation
Indices: 4795102--4795165 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
4795092 GGAATATTGT
4795102 ATCGATACAATGTATCGATAC
1 ATCGATACAATGTATCGATAC
** ***
4795123 AAGGA-ATTTTGTATCGATAC
1 ATCGATACAATGTATCGATAC
4795143 ATCGATACAATGTATCGATAC
1 ATCGATACAATGTATCGATAC
4795164 AT
1 AT
4795166 TTTGAAAAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (21 bp):
ATCGATACAATGTATCGATAC
Found at i:4797540 original size:13 final size:13
Alignment explanation
Indices: 4797522--4797546 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4797512 TAATATGCTT
4797522 TGTATCGATACAC
1 TGTATCGATACAC
4797535 TGTATCGATACA
1 TGTATCGATACA
4797547 TGGACAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:4797625 original size:20 final size:20
Alignment explanation
Indices: 4797600--4797650 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
4797590 CCATTGTGTT
*
4797600 TATCGATACATGGT-ACATTG
1 TATCGATACATGATGA-ATTG
*
4797620 TATCGATAAATGATGAATTG
1 TATCGATACATGATGAATTG
4797640 TATCGATACAT
1 TATCGATACAT
4797651 TGCTTGTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATGATGAATTG
Found at i:4800059 original size:21 final size:23
Alignment explanation
Indices: 4800035--4800084 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 23
4800025 AAAATGCTAT
4800035 AAATGCATGAAGCAT-AGC-TCA
1 AAATGCATGAAGCATGAGCGTCA
*
4800056 AAATGCATGAATCATGAGCTGTCA
1 AAATGCATGAAGCATGAGC-GTCA
4800080 AAATG
1 AAATG
4800085 ATGGAGATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 14 0.56
22 3 0.12
24 8 0.32
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (23 bp):
AAATGCATGAAGCATGAGCGTCA
Found at i:4801260 original size:20 final size:20
Alignment explanation
Indices: 4801232--4801306 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
4801222 TTTTACCTTG
4801232 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
4801252 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
4801272 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
4801292 ATGTATCGATACATT
1 ATGTATCGATACATT
4801307 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:4801299 original size:40 final size:39
Alignment explanation
Indices: 4801232--4801309 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
4801222 TTTTACCTTG
* *
4801232 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
4801272 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
4801310 TCTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:4802250 original size:24 final size:22
Alignment explanation
Indices: 4802221--4802269 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 22
4802211 TGACCATGCA
4802221 TTTTTATTATGTTTCATGCATTTT
1 TTTTTATTATGTTTCATG--TTTT
4802245 TTTTTATTATGTTTCATGTTTT
1 TTTTTATTATGTTTCATGTTTT
4802267 TTT
1 TTT
4802270 AACATGTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 7 0.28
24 18 0.72
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.71
Consensus pattern (22 bp):
TTTTTATTATGTTTCATGTTTT
Found at i:4810346 original size:20 final size:22
Alignment explanation
Indices: 4810312--4810352 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
4810302 ACAAATTTCC
*
4810312 TCATTTTTACTTC-AAATCACT
1 TCATTTTTACATCAAAATCACT
4810333 TCATTTTT-CATCAAAATCAC
1 TCATTTTTACATCAAAATCAC
4810353 CAACAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (22 bp):
TCATTTTTACATCAAAATCACT
Found at i:4817025 original size:23 final size:23
Alignment explanation
Indices: 4816999--4817043 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
4816989 TGTTGCCAAC
4816999 AGCTGAAAGTTGTTGTTACCAGT
1 AGCTGAAAGTTGTTGTTACCAGT
*
4817022 AGCTGAAAGTTGTTGTTTCCAG
1 AGCTGAAAGTTGTTGTTACCAG
4817044 CAATTGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (23 bp):
AGCTGAAAGTTGTTGTTACCAGT
Found at i:4817051 original size:23 final size:23
Alignment explanation
Indices: 4816987--4817065 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 23
4816977 TGGGTGTTTA
* * *
4816987 GTTGTTGCCAACAGCTGAAAGTT
1 GTTGTTACCAGCAACTGAAAGTT
* *
4817010 GTTGTTACCAGTAGCTGAAAGTT
1 GTTGTTACCAGCAACTGAAAGTT
* * *
4817033 GTTGTTTCCAGCAATTGAAAGTG
1 GTTGTTACCAGCAACTGAAAGTT
*
4817056 GTTGCTACCA
1 GTTGTTACCA
4817066 TGGGAACCAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (23 bp):
GTTGTTACCAGCAACTGAAAGTT
Found at i:4821355 original size:57 final size:57
Alignment explanation
Indices: 4821287--4821403 Score: 207
Period size: 57 Copynumber: 2.1 Consensus size: 57
4821277 GTCGTTCCTT
* *
4821287 AAATGAGACAAACATGATTCTTGTAATAATCTCTATTTTTCTTATGATTAAGCAATA
1 AAATGAGACAAACATGATTCTTGTAATAATCTCCATTTTTCTCATGATTAAGCAATA
*
4821344 AAATGAGACAAACATGATTCTTGTAATAATCTCCATTTTTCTCATGATTAAGTAATA
1 AAATGAGACAAACATGATTCTTGTAATAATCTCCATTTTTCTCATGATTAAGCAATA
4821401 AAA
1 AAA
4821404 ATACAGTATC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (57 bp):
AAATGAGACAAACATGATTCTTGTAATAATCTCCATTTTTCTCATGATTAAGCAATA
Found at i:4822505 original size:159 final size:159
Alignment explanation
Indices: 4822055--4823203 Score: 724
Period size: 159 Copynumber: 7.3 Consensus size: 159
4822045 TGTTCTTTCA
* * * ** * ** *
4822055 CAAGAAAGGATTTTCTGTCCACAATTTT-CTTAGAATCAAAGTTCATTCCTCAAAACAAGACAAA
1 CAAGAAAAGATTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTC-AAATGAGAAAAA
* * * * ** * * * * *
4822119 CATTGATTCTCACAAAAATC-CCACTCTTTTCATGATTGGGAACCACAAAAACATT-TTCTCA-T
65 CATGGATTCTCATAATAATCTCCATTCTTTTTGTGATTGGGCACCATAAACACATTCTCCTTATT
* *
4822181 -CGATAAACACGATATTGATGCTTTGGTTTTT
130 AGGAT--ACATGATATTGATGCTTTGGTTTTT
* * *
4822212 CAAGAAAA-AGTTTTCTTTCCACCA-TTTCATTAGAATCAAAGTTTGTCCCTCAAATAAG-ACAA
1 CAAGAAAAGA-TTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGAAAAA
** * * *
4822274 -ATGTGAAACTTTATAATAATCTCCATTCTTTTTGTGATTGGACACCATAAACACATAT-TTCTT
65 CATG-GATTC-TCATAATAATCTCCATTCTTTTTGTGATTGGGCACCATAAACACAT-TCTCCTT
* * ** *
4822337 ACTAAGATACACAATATTGATACTTTGGTTTTT
127 ATTAGGATACATGATATTGATGCTTTGGTTTTT
* * * **
4822370 CAGGAAAAGATTTTATTTCCACCATTTTTCTTAGAATCAAAGTTTGTCATTCAAATGAGAAAAAC
1 CAAGAAAAGATTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGAAAAAC
* * * *
4822435 ATTGATTCTCATAATAATCTCCAATATTTTTGTGATTGGGTACCATAAACACATTCTCCTTATTA
66 ATGGATTCTCATAATAATCTCCATTCTTTTTGTGATTGGGCACCATAAACACATTCTCCTTATTA
* * ** *
4822500 GGATACATGATATTAATGCATTACTTTTG
131 GGATACATGATATTGATGCTTTGGTTTTT
* * * *
4822529 CAAGAAAAGCTTTTCTTCTCC-CCATTTTCCTTACAATCAATGTTTGTCCTTCAAA--A-AAATG
1 CAAGAAAAGATTTTCTT-TCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGAAA--
* ** * * * * *
4822590 ATCATGGATTCTTGTAAAAATCTCCACTCTTTTTGTGGTTGGCCA-CATAAACACATTAT-CTTC
63 AACATGGATTCTCATAATAATCTCCATTCTTTTTGTGATTGGGCACCATAAACACATTCTCCTT-
* * *
4822653 ATT-GGTATACATGATATTAATGCTTTAGTTTCAT
127 ATTAGG-ATACATGATATTGATGCTTTGGTTT-TT
* * * * * *
4822687 -AAGAAAAG-CTTT-TTTCCACTATTTTCCTTAGAATATCAAAGTTTGTCCATTAAATAAGACAA
1 CAAGAAAAGATTTTCTTTCCACCATTTTCCTTAG-A-ATCAAAGTTTGTCCCTCAAATGAGAAAA
* * * ** * *
4822749 ACATGGATTCTCGTAATAATCTCCGTT-TGTTTTATG-TTCAAGCACTAAAAACACATTCTCCTT
64 ACATGGATTCTCATAATAATCTCCATTCT-TTTTGTGATT-GGGCACCATAAACACATTCTCCTT
* * * **
4822812 TTTGGGATACATGATATTGATGCTTTAGTTTCA
127 ATTAGGATACATGATATTGATGCTTTGGTTTTT
** * * * * * ** *
4822845 CAAGAAAATCTTTTCTTTTCACCATTTTCTTTAAAAACAGAGTTCATCCCCCAAATGA-AACAAA
1 CAAGAAAAGATTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGAA-AAA
* * ** * *
4822909 AATGGATACTCATAATAATCTCCATTCTTTTCATGATTGGGC-CCATAAATAGACATTCTCCTCA
65 CATGGATTCTCATAATAATCTCCATTCTTTTTGTGATTGGGCACCAT-AA-ACACATTCTCCTTA
* * * **
4822973 -TACGAATACATGATATCGATGCTTTGGATTCA
128 TTA-GGATACATGATATTGATGCTTTGGTTTTT
* * ** * * *
4823005 CAA-TAAA-ATCTTT-TTTCCACCATTTTCCTTAGAATCAAAATTCATCCCTAAAATGTGACAAA
1 CAAGAAAAGAT-TTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGAAAAA
* * * * * * **
4823067 C-T--CTT-TTATAATAATCTCGATTCTTTTTGTGATTGGGTAACAAAAACACATTCTATTTATT
65 CATGGATTCTCATAATAATCTCCATTCTTTTTGTGATTGGGCACCATAAACACATTCTCCTTATT
* ** * *
4823128 GGGATACACAATGTTGATTCTTTGGTTTTT
130 AGGATACATGATATTGATGCTTTGGTTTTT
* * * * *
4823158 CAAGAGATGTTTTTCTTTCCACCATTTTCCTTGGAACCAAAGTTTG
1 CAAGAAAAGATTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTG
4823204 GACTCAAAGA
Statistics
Matches: 770, Mismatches: 176, Indels: 94
0.74 0.17 0.09
Matches are distributed among these distances:
153 33 0.04
154 40 0.05
155 48 0.06
156 30 0.04
157 134 0.17
158 157 0.20
159 246 0.32
160 65 0.08
161 17 0.02
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (159 bp):
CAAGAAAAGATTTTCTTTCCACCATTTTCCTTAGAATCAAAGTTTGTCCCTCAAATGAGAAAAAC
ATGGATTCTCATAATAATCTCCATTCTTTTTGTGATTGGGCACCATAAACACATTCTCCTTATTA
GGATACATGATATTGATGCTTTGGTTTTT
Found at i:4823698 original size:81 final size:80
Alignment explanation
Indices: 4823585--4823736 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 80
4823575 AAAAAAAGAT
* * * *
4823585 AATCCTATCCAATAAGAAAAAGTCTATTCCTTATCCTAATCTGATTAGGACTTATCTAAATAATT
1 AATCCTATCCAATAAGAAAAAGTCTACTCCTTATCATAATCTGATTAGGAATTATCTAAACAATT
4823650 TAAAATCCTAAACAC
66 TAAAATCCTAAACAC
* *
4823665 AATCCTAAT-CAATAAGGATAAAGTCTACTCCTTATCATAATTTGATTAGGAATTATCTAAACAA
1 AATCCT-ATCCAATAA-GAAAAAGTCTACTCCTTATCATAATCTGATTAGGAATTATCTAAACAA
4823729 TTTAAAAT
64 TTTAAAAT
4823737 TGAAAAGTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 12 0.19
81 52 0.81
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (80 bp):
AATCCTATCCAATAAGAAAAAGTCTACTCCTTATCATAATCTGATTAGGAATTATCTAAACAATT
TAAAATCCTAAACAC
Found at i:4824725 original size:19 final size:22
Alignment explanation
Indices: 4824701--4824746 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
4824691 CACACACTCA
4824701 CTTTTTAT-AT-CACTC-TTTT
1 CTTTTTATCATGCACTCATTTT
*
4824720 CTTTTTATCGTGCACTCATTTT
1 CTTTTTATCATGCACTCATTTT
4824742 CTTTT
1 CTTTT
4824747 CTTTCATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 1 0.04
21 5 0.22
22 9 0.39
ACGTcount: A:0.13, C:0.22, G:0.04, T:0.61
Consensus pattern (22 bp):
CTTTTTATCATGCACTCATTTT
Found at i:4828160 original size:20 final size:20
Alignment explanation
Indices: 4828135--4828188 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
4828125 GTTGGAAGCA
*
4828135 ATGTATCGATACAATACATC
1 ATGTATCGATACAATACACC
**
4828155 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATACACC
4828175 ATGTATCGATACAA
1 ATGTATCGATACAA
4828189 ACAATGGTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATACACC
Found at i:4828261 original size:19 final size:19
Alignment explanation
Indices: 4828216--4828270 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 19
4828206 ACTGCCAGTT
*
4828216 TCATGTATCGATACAATTA
1 TCATGTATCGATACAATGA
4828235 TCCATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
4828255 TCATGTATCGATACAA
1 TCATGTATCGATACAA
4828271 CGTATCGATA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:4828277 original size:13 final size:13
Alignment explanation
Indices: 4828259--4828283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4828249 CAATGATCAT
4828259 GTATCGATACAAC
1 GTATCGATACAAC
4828272 GTATCGATACAA
1 GTATCGATACAA
4828284 AGCATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
GTATCGATACAAC
Found at i:4828299 original size:33 final size:32
Alignment explanation
Indices: 4828240--4828302 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
4828230 AATTATCCAT
* *
4828240 GTATCGATACAATGATCATGTATCGATACAAC
1 GTATCGATACAAAGATAATGTATCGATACAAC
4828272 GTATCGATACAAAGCATAATGTATCGATACA
1 GTATCGATACAAAG-ATAATGTATCGATACA
4828303 TATGGGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (32 bp):
GTATCGATACAAAGATAATGTATCGATACAAC
Found at i:4830842 original size:20 final size:20
Alignment explanation
Indices: 4830817--4830881 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
4830807 TAGTAACCCA
4830817 TGTATCGATACAAGGAATAT
1 TGTATCGATACAAGGAATAT
4830837 TGTATCGATAC-----A-A-
1 TGTATCGATACAAGGAATAT
*
4830850 TGTATCGATACAAGGAATTT
1 TGTATCGATACAAGGAATAT
4830870 TGTATCGATACA
1 TGTATCGATACA
4830882 TCGATACAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
20 23 0.62
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAAGGAATAT
Found at i:4830855 original size:13 final size:13
Alignment explanation
Indices: 4830837--4830862 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4830827 CAAGGAATAT
4830837 TGTATCGATACAA
1 TGTATCGATACAA
4830850 TGTATCGATACAA
1 TGTATCGATACAA
4830863 GGAATTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4830858 original size:33 final size:33
Alignment explanation
Indices: 4830816--4830881 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
4830806 ATAGTAACCC
4830816 ATGTATCGATACAAGGAATATTGTATCGATACA
1 ATGTATCGATACAAGGAATATTGTATCGATACA
*
4830849 ATGTATCGATACAAGGAATTTTGTATCGATACA
1 ATGTATCGATACAAGGAATATTGTATCGATACA
4830882 TCGATACAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAAGGAATATTGTATCGATACA
Found at i:4830896 original size:21 final size:21
Alignment explanation
Indices: 4830840--4830903 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
4830830 GGAATATTGT
4830840 ATCGATACAATGTATCGATAC
1 ATCGATACAATGTATCGATAC
** ***
4830861 AAGGA-ATTTTGTATCGATAC
1 ATCGATACAATGTATCGATAC
4830881 ATCGATACAATGTATCGATAC
1 ATCGATACAATGTATCGATAC
4830902 AT
1 AT
4830904 TTTGAAAAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (21 bp):
ATCGATACAATGTATCGATAC
Found at i:4833356 original size:13 final size:13
Alignment explanation
Indices: 4833338--4833365 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4833328 CGATACATGG
4833338 TACATTGTATCGA
1 TACATTGTATCGA
4833351 TACATTGTATCGA
1 TACATTGTATCGA
4833364 TA
1 TA
4833366 AATGATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:4835797 original size:21 final size:23
Alignment explanation
Indices: 4835773--4835822 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 23
4835763 AAAATGCTAT
4835773 AAATGCATGAAGCAT-AGC-TCA
1 AAATGCATGAAGCATGAGCGTCA
*
4835794 AAATGCATGAATCATGAGCTGTCA
1 AAATGCATGAAGCATGAGC-GTCA
4835818 AAATG
1 AAATG
4835823 ATGGAGATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 14 0.56
22 3 0.12
24 8 0.32
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (23 bp):
AAATGCATGAAGCATGAGCGTCA
Found at i:4836998 original size:20 final size:20
Alignment explanation
Indices: 4836970--4837044 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
4836960 TTTTACCTTG
4836970 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
4836990 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
4837010 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
4837030 ATGTATCGATACATT
1 ATGTATCGATACATT
4837045 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:4837037 original size:40 final size:39
Alignment explanation
Indices: 4836970--4837047 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
4836960 TTTTACCTTG
* *
4836970 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
4837010 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
4837048 TCTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:4837988 original size:24 final size:22
Alignment explanation
Indices: 4837959--4838007 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 22
4837949 TGACCATGCA
4837959 TTTTTATTATGTTTCATGCATTTT
1 TTTTTATTATGTTTCATG--TTTT
4837983 TTTTTATTATGTTTCATGTTTT
1 TTTTTATTATGTTTCATGTTTT
4838005 TTT
1 TTT
4838008 AACATGTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 7 0.28
24 18 0.72
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.71
Consensus pattern (22 bp):
TTTTTATTATGTTTCATGTTTT
Found at i:4846082 original size:20 final size:22
Alignment explanation
Indices: 4846048--4846088 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
4846038 ACAAATTTCC
*
4846048 TCATTTTTACTTC-AAATCACT
1 TCATTTTTACATCAAAATCACT
4846069 TCATTTTT-CATCAAAATCAC
1 TCATTTTTACATCAAAATCAC
4846089 CAACAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (22 bp):
TCATTTTTACATCAAAATCACT
Found at i:4848560 original size:13 final size:13
Alignment explanation
Indices: 4848542--4848605 Score: 86
Period size: 13 Copynumber: 5.4 Consensus size: 13
4848532 CGATACATGG
4848542 TACATTGTATCGA
1 TACATTGTATCGA
4848555 TACATTGTATCGA
1 TACATTGTATCGA
4848568 TACA-TG-AT-G-
1 TACATTGTATCGA
4848577 -A-ATTGTATCGA
1 TACATTGTATCGA
4848588 TACATTGTATCGA
1 TACATTGTATCGA
4848601 TACAT
1 TACAT
4848606 GATGAATTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
7 1 0.02
8 3 0.07
9 2 0.04
10 2 0.04
11 2 0.04
12 3 0.07
13 32 0.71
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:4848568 original size:33 final size:33
Alignment explanation
Indices: 4848526--4848625 Score: 175
Period size: 33 Copynumber: 3.0 Consensus size: 33
4848516 CTACCACTGT
*
4848526 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCGATACATGATGA-ATTGTATCGATACA
4848559 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTGTATCGATACA
4848592 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTGTATCGATACA
4848625 T
1 T
4848626 GGCTACGGGA
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
33 64 0.98
34 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTGTATCGATACA
Found at i:4848583 original size:20 final size:20
Alignment explanation
Indices: 4848558--4848626 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
4848548 GTATCGATAC
4848558 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGATGA
4848578 ATTGTATCGATAC-------
1 ATTGTATCGATACATGATGA
4848591 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGATGA
4848611 ATTGTATCGATACATG
1 ATTGTATCGATACATG
4848627 GCTACGGGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 13 0.31
20 29 0.69
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (20 bp):
ATTGTATCGATACATGATGA
Found at i:4851178 original size:9 final size:9
Alignment explanation
Indices: 4851164--4851197 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
4851154 TCCGAGTCAC
4851164 CATCATTAT
1 CATCATTAT
4851173 CATCATTAT
1 CATCATTAT
4851182 CATC-TTCAT
1 CATCATT-AT
4851191 CATCATT
1 CATCATT
4851198 GATGGTTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (9 bp):
CATCATTAT
Found at i:4852822 original size:13 final size:13
Alignment explanation
Indices: 4852782--4852834 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
4852772 CCATTAGAGG
4852782 CAATGTATCGATA
1 CAATGTATCGATA
4852795 CAA--TA-C-AT-
1 CAATGTATCGATA
4852803 C-ATGTATCGATA
1 CAATGTATCGATA
4852815 CAATGTATCGATA
1 CAATGTATCGATA
4852828 CAATGTA
1 CAATGTA
4852835 CCATGTGTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 4 0.12
10 2 0.06
11 4 0.12
12 1 0.03
13 21 0.62
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:4856127 original size:13 final size:13
Alignment explanation
Indices: 4856109--4856134 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4856099 CAGAGTAGCT
4856109 TTGTATCGATACA
1 TTGTATCGATACA
4856122 TTGTATCGATACA
1 TTGTATCGATACA
4856135 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4857019 original size:49 final size:49
Alignment explanation
Indices: 4856802--4857284 Score: 363
Period size: 49 Copynumber: 9.7 Consensus size: 49
4856792 GGTGTCACTA
* * * * *
4856802 TGCTGATTCAAGACCAGTGATATTGGGCTTAAAGATGTAAAGAATGTCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAG-GTGCCAATG
* * * * * *
4856854 TGCTGATTCACGGTCAGCGACATTTGACTTGAAGATGAGAAGAATGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG-GTGCCAATG
* * * * *
4856906 TGCTGATTCAAGGCCAGCGACATTAGG-TTTAGGAATG-TTATAGATGCCAATA
1 TGCTGATTCAAGGCCAGCGATATT-GGACTTA--AA-GATGA-AGGTGCCAATG
* * * * * *
4856958 TGCTGATTTAAGGCCAGTGATTTTGGACTTAGAGGTGAAGGTGCTAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
* * * * *
4857007 TGCTAATTTAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATG
* * *
4857059 TGCTGATTCAAGGCTAGCGGTATTGAACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
* * * * * * *
4857108 TGCTAATTCAAGGCCAGCAACATTGGATTTAAAGGTGAAGGTGCTAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
*
4857157 TGCTGATTCAAGGCC-GACGATATTGGACTTAAAGATGAAAGTGCCAATG
1 TGCTGATTCAAGGCCAG-CGATATTGGACTTAAAGATGAAGGTGCCAATG
* * * *
4857206 TGCTGATTCAAAGCCAACGAAATTGGACTT-AA-A-G-A--TGCCAATA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
* *
4857249 TGCTGATTCAAGGCTAGTGATATTGGACTTAGAAGA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGA
4857285 AGATGCCACC
Statistics
Matches: 344, Mismatches: 70, Indels: 40
0.76 0.15 0.09
Matches are distributed among these distances:
43 32 0.09
45 3 0.01
46 2 0.01
47 1 0.00
48 3 0.01
49 154 0.45
50 3 0.01
51 2 0.01
52 136 0.40
53 3 0.01
54 4 0.01
55 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.27
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
Found at i:4857341 original size:28 final size:29
Alignment explanation
Indices: 4857301--4857966 Score: 642
Period size: 28 Copynumber: 23.5 Consensus size: 29
4857291 CACCAACTTG
* *
4857301 TGTGGGCTTTTGAAAGGGTG-CACCAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* * * *
4857329 TGTGTGCTTTTGAAA-GTTGCTATTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
*
4857357 TGTGGGC-TTTGAAAAGG-TGCCATTAACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACT
* * * *
4857385 TATGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
*
4857414 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* **
4857442 TTTGGGCTTTAAAAAGG-TGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
*
4857470 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
*
4857498 TGTGGGCTTTTG-AAGGTTGCCACTTACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* **
4857526 TGTGGGC-TTTGAAAGGGGTG-CACCGACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTAACT
* *
4857554 TATGGGCTTCTG-AAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* * *
4857582 TGTGGGC-TTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACT
* **
4857611 TGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTAACT
4857640 TGTGGGCTTTTG-AAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* * * *
4857668 TTTAGGC-TTTGAAAAGG-TACCAATAACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACT
4857696 TGTGGGCTTTT-AAAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* *
4857724 TGTGCGCTTTTG-AAGGTTGCCATTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* **
4857752 TGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTAACT
4857781 TGTGGGCTTTTG-AAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* *
4857809 TGTGGGC-TTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACT
* *
4857838 TATGGGCTTCTG-AAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* *
4857866 TATGGGC-TTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACT
*** *
4857895 TGTGGGCTTTTGAAAAAATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
* *
4857924 TGTGGGCTTTGGAAATG-TGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACT
*
4857952 TATGGGCTTTTGAAA
1 TGTGGGCTTTTGAAA
4857967 AGATGCTAGT
Statistics
Matches: 528, Mismatches: 81, Indels: 58
0.79 0.12 0.09
Matches are distributed among these distances:
27 42 0.08
28 297 0.56
29 174 0.33
30 15 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTAACT
Found at i:4857435 original size:57 final size:57
Alignment explanation
Indices: 4857301--4857966 Score: 626
Period size: 57 Copynumber: 11.8 Consensus size: 57
4857291 CACCAACTTG
* * * * * *
4857301 TGTGGGCTTTTGAAAGGGTG-CACCAACTTGTGTGCTTTTGAAAGTTGCTATTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* * * *
4857357 TGTGGGC-TTTGAAAAGG-TGCCATTAACTTATGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACTTGTGGGCTTTTG-AAAGTTGCCACTAACT
* * ** *
4857414 TGTGGGCTTTTG-AAGGTTGCCACTGACTTTTGGGCTTTAAAAAGGTGCCACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* * *
4857470 TGTGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTTACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* ** * * *
4857526 TGTGGGC-TTTGAAAGGGGTG-CACCGACTTATGGGCTTCTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* * * * **
4857582 TGTGGGC-TTTGAAAAAGATGCCACTGACTTGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACTTGTGGGCTTTTGAAA--GTTGCCACTAACT
* * * * *
4857640 TGTGGGCTTTTG-AAGGTTGCCACTAACTTTTAGGC-TTTGAAAAGGTACCAATAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTG-AAAGTTGCCACTAACT
* * *
4857696 TGTGGGCTTTT-AAAGGTTGCCACTAACTTGTGCGCTTTTGAAGGTTGCCATTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* ** *
4857752 TGTGGGC-TTTGAAAGGGGTGCCACCGACTTGTGGGCTTTTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* * * * *
4857809 TGTGGGC-TTTGAAAAGGGTGCCACTGACTTATGGGCTTCTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
* * ** *
4857866 TATGGGC-TTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTGAAAAAATGCCACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTAACTTGTGGGCTTTTG-AAAGTTGCCACTAACT
* * *
4857924 TGTGGGCTTTGGAAATG-TGCCACTAACTTATGGGCTTTTGAAA
1 TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTGAAA
4857967 AGATGCTAGT
Statistics
Matches: 520, Mismatches: 70, Indels: 40
0.83 0.11 0.06
Matches are distributed among these distances:
55 13 0.03
56 221 0.43
57 230 0.44
58 49 0.09
59 7 0.01
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (57 bp):
TGTGGGCTTTTGAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAGTTGCCACTAACT
Found at i:4858379 original size:37 final size:37
Alignment explanation
Indices: 4858337--4858421 Score: 170
Period size: 37 Copynumber: 2.3 Consensus size: 37
4858327 AAAGATGAAG
4858337 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
1 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
4858374 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
1 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
4858411 CACAAATGCAT
1 CACAAATGCAT
4858422 GATTGTGGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (37 bp):
CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
Found at i:4859473 original size:16 final size:16
Alignment explanation
Indices: 4859442--4859498 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
4859432 TCATCAAGAC
* *
4859442 TTTTTTTTGTTGTTTT
1 TTTTTTTTCTTCTTTT
4859458 TTTCTTTTTCTT-TTTT
1 TTT-TTTTTCTTCTTTT
4859474 TTTGTTTTTCTTCTCTTT
1 TTT-TTTTTCTTCT-TTT
4859492 TTTTTTT
1 TTTTTTT
4859499 AGGACGCCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
16 18 0.50
17 12 0.33
18 6 0.17
ACGTcount: A:0.00, C:0.09, G:0.05, T:0.86
Consensus pattern (16 bp):
TTTTTTTTCTTCTTTT
Found at i:4859478 original size:27 final size:26
Alignment explanation
Indices: 4859442--4859498 Score: 82
Period size: 24 Copynumber: 2.3 Consensus size: 26
4859432 TCATCAAGAC
*
4859442 TTTTTTTTGTTGTTTTT-TTCT-TTT
1 TTTTTTTTTTTGTTTTTCTTCTCTTT
*
4859466 TCTTTTTTTTTGTTTTTCTTCTCTTT
1 TTTTTTTTTTTGTTTTTCTTCTCTTT
4859492 TTTTTTT
1 TTTTTTT
4859499 AGGACGCCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 15 0.54
25 4 0.14
26 9 0.32
ACGTcount: A:0.00, C:0.09, G:0.05, T:0.86
Consensus pattern (26 bp):
TTTTTTTTTTTGTTTTTCTTCTCTTT
Found at i:4859481 original size:22 final size:21
Alignment explanation
Indices: 4859456--4859497 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
4859446 TTTTGTTGTT
*
4859456 TTTTTCTTTTTCTTTTTTTTTG
1 TTTTTC-TTCTCTTTTTTTTTG
4859478 TTTTTCTTCTCTTTTTTTTT
1 TTTTTCTTCTCTTTTTTTTT
4859498 TAGGACGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (21 bp):
TTTTTCTTCTCTTTTTTTTTG
Found at i:4867896 original size:12 final size:12
Alignment explanation
Indices: 4867879--4867903 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4867869 TCCATTCTTC
4867879 ATATCTAGGAGT
1 ATATCTAGGAGT
4867891 ATATCTAGGAGT
1 ATATCTAGGAGT
4867903 A
1 A
4867904 GTGGGGCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
ATATCTAGGAGT
Found at i:4868384 original size:163 final size:163
Alignment explanation
Indices: 4868114--4868441 Score: 656
Period size: 163 Copynumber: 2.0 Consensus size: 163
4868104 TAAGAGCGGT
4868114 ACACAAGTGTAGTCCCCACATCTGTACACAACTAACTGAGGGAACGCCCAAGGGGCTCTCCAGGT
1 ACACAAGTGTAGTCCCCACATCTGTACACAACTAACTGAGGGAACGCCCAAGGGGCTCTCCAGGT
4868179 GACTTCTTCATCCTTGAGATTTCGTAGTTTCTCGACCCAATGCACTGTTGTCTTATCTTGAGGAC
66 GACTTCTTCATCCTTGAGATTTCGTAGTTTCTCGACCCAATGCACTGTTGTCTTATCTTGAGGAC
4868244 ATTCCTTCTCTAGTGCCATGGAAAGAGGACTGA
131 ATTCCTTCTCTAGTGCCATGGAAAGAGGACTGA
4868277 ACACAAGTGTAGTCCCCACATCTGTACACAACTAACTGAGGGAACGCCCAAGGGGCTCTCCAGGT
1 ACACAAGTGTAGTCCCCACATCTGTACACAACTAACTGAGGGAACGCCCAAGGGGCTCTCCAGGT
4868342 GACTTCTTCATCCTTGAGATTTCGTAGTTTCTCGACCCAATGCACTGTTGTCTTATCTTGAGGAC
66 GACTTCTTCATCCTTGAGATTTCGTAGTTTCTCGACCCAATGCACTGTTGTCTTATCTTGAGGAC
4868407 ATTCCTTCTCTAGTGCCATGGAAAGAGGACTGA
131 ATTCCTTCTCTAGTGCCATGGAAAGAGGACTGA
4868440 AC
1 AC
4868442 TGGAAGAAGA
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 165 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (163 bp):
ACACAAGTGTAGTCCCCACATCTGTACACAACTAACTGAGGGAACGCCCAAGGGGCTCTCCAGGT
GACTTCTTCATCCTTGAGATTTCGTAGTTTCTCGACCCAATGCACTGTTGTCTTATCTTGAGGAC
ATTCCTTCTCTAGTGCCATGGAAAGAGGACTGA
Found at i:4873769 original size:14 final size:14
Alignment explanation
Indices: 4873750--4873781 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
4873740 TTACTGTTTA
4873750 TATCAACACTTATG
1 TATCAACACTTATG
4873764 TATCAACACTTATG
1 TATCAACACTTATG
4873778 TATC
1 TATC
4873782 GATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (14 bp):
TATCAACACTTATG
Found at i:4874159 original size:19 final size:20
Alignment explanation
Indices: 4874135--4874209 Score: 98
Period size: 19 Copynumber: 3.8 Consensus size: 20
4874125 ACTGCCAGTT
4874135 TCATGTATCGATACAATG-A
1 TCATGTATCGATACAATGCA
*
4874154 TCATGTATCGATACAATGTA
1 TCATGTATCGATACAATGCA
* *
4874174 TCGATATATCGATACAAAGCA
1 TC-ATGTATCGATACAATGCA
*
4874195 TAATGTATCGATACA
1 TCATGTATCGATACA
4874210 TCTGGGTGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
19 18 0.37
20 15 0.31
21 16 0.33
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (20 bp):
TCATGTATCGATACAATGCA
Found at i:4875679 original size:18 final size:18
Alignment explanation
Indices: 4875658--4875694 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
4875648 ATCAATAATC
4875658 TTTTAAAAATATATGTATT
1 TTTTAAAAATATATGT-TT
4875677 TTTTAAAAAT-TATGTTT
1 TTTTAAAAATATATGTTT
4875694 T
1 T
4875695 ATATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 5 0.28
19 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAAAAATATATGTTT
Found at i:4875701 original size:18 final size:19
Alignment explanation
Indices: 4875661--4875702 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
4875651 AATAATCTTT
*
4875661 TAAAAATATATGTATTTTT
1 TAAAAATATATGTATTTTA
4875680 TAAAAAT-TATGT-TTTATA
1 TAAAAATATATGTATTT-TA
4875698 TAAAA
1 TAAAA
4875703 TAAAGTTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 3 0.14
18 11 0.52
19 7 0.33
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (19 bp):
TAAAAATATATGTATTTTA
Found at i:4876002 original size:2 final size:2
Alignment explanation
Indices: 4875995--4876027 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4875985 ATTTTTCATG
4875995 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4876028 TACAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4876561 original size:4 final size:4
Alignment explanation
Indices: 4876552--4876598 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
4876542 CACTTTTCAT
* * *
4876552 TTTA TTTA TTTC TTTA TTTA TTTC TTGTG TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTT
4876599 CATTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.08
4 30 0.83
5 3 0.08
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:4876569 original size:12 final size:12
Alignment explanation
Indices: 4876552--4876599 Score: 62
Period size: 12 Copynumber: 4.0 Consensus size: 12
4876542 CACTTTTCAT
4876552 TTTATTTATTTC
1 TTTATTTATTTC
4876564 TTTATTTATTTC
1 TTTATTTATTTC
* *
4876576 TTGTGTTTATTTA
1 TT-TATTTATTTC
4876589 TTTA-TTATTTC
1 TTTATTTATTTC
4876600 ATTCAATCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
11 6 0.19
12 15 0.48
13 10 0.32
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.73
Consensus pattern (12 bp):
TTTATTTATTTC
Found at i:4878953 original size:42 final size:42
Alignment explanation
Indices: 4878892--4879007 Score: 187
Period size: 42 Copynumber: 2.8 Consensus size: 42
4878882 TAGCCTTCAA
* *
4878892 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
4878934 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGGCAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
4878976 AGAGATAATAGAGAGAGGAGGGATGATAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAG
4879008 ATGGAGAGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.42, C:0.02, G:0.47, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:4878994 original size:18 final size:17
Alignment explanation
Indices: 4878973--4879016 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
4878963 GAGGAGAGGC
4878973 AGGAGAGATAATAGAGAG
1 AGGAGAGATAATAG-GAG
* *
4878991 AGGAGGGATGATAGGAG
1 AGGAGAGATAATAGGAG
4879008 ATGGAGAGA
1 A-GGAGAGA
4879017 AGAAGATGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.11
Consensus pattern (17 bp):
AGGAGAGATAATAGGAG
Found at i:4884138 original size:21 final size:20
Alignment explanation
Indices: 4884109--4884165 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
4884099 AAAACCCTGA
**
4884109 AAAGTATCGATACACATTTT
1 AAAGTATCGATACACATTGC
*
4884129 AAATGTATCGATACAGATTGC
1 AAA-GTATCGATACACATTGC
*
4884150 ATAGTATCGATACACA
1 AAAGTATCGATACACA
4884166 CAAATATGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (20 bp):
AAAGTATCGATACACATTGC
Found at i:4884236 original size:53 final size:53
Alignment explanation
Indices: 4884153--4884286 Score: 232
Period size: 53 Copynumber: 2.5 Consensus size: 53
4884143 AGATTGCATA
*
4884153 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACACTGGCAGTAGCCAAATTT
*
4884207 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACACTGGCAGTAGCCAAATTT
*
4884260 GTATCGATACACAAAATATGTATCGAT
1 GTATCGATACACACAATATGTATCGAT
4884287 GCATTGGTAG
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 63 0.82
54 14 0.18
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACACTGGCAGTAGCCAAATTT
Found at i:4884365 original size:21 final size:22
Alignment explanation
Indices: 4884331--4884386 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
4884321 CTTCACTATT
*
4884331 CATCACTGTTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
4884353 CATCACT-TTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
4884374 CATCACTATTCAT
1 CATCACTATTCAT
4884387 ATGTCACTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (22 bp):
CATCACTATTCATGTATCGATA
Found at i:4884404 original size:23 final size:23
Alignment explanation
Indices: 4884377--4884422 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
4884367 ATCGATACAT
* *
4884377 CACTATTCATATGTCACTGTTCA
1 CACTATTCACATATCACTGTTCA
*
4884400 CACTATTCACGTATCACTGTTCA
1 CACTATTCACATATCACTGTTCA
4884423 TGTATCGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (23 bp):
CACTATTCACATATCACTGTTCA
Found at i:4884475 original size:13 final size:13
Alignment explanation
Indices: 4884457--4884482 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4884447 TCACTATTCA
4884457 TGTATCGATACAT
1 TGTATCGATACAT
4884470 TGTATCGATACAT
1 TGTATCGATACAT
4884483 CATAAATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4885788 original size:24 final size:24
Alignment explanation
Indices: 4885761--4885810 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
4885751 ATATAAATTT
4885761 ATAAAAAAAAAGTAATTTTTTCAA
1 ATAAAAAAAAAGTAATTTTTTCAA
* * *
4885785 ATAAATAAGAAGTTATTTTTTCAA
1 ATAAAAAAAAAGTAATTTTTTCAA
4885809 AT
1 AT
4885811 GAGAAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (24 bp):
ATAAAAAAAAAGTAATTTTTTCAA
Found at i:4888452 original size:28 final size:28
Alignment explanation
Indices: 4888382--4888452 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
4888372 AGCTCAAATT
* **
4888382 AATATTTTTAAAATAAAAATATATTTAA
1 AATATTTTTAAAATTAAAATATAAATAA
*
4888410 AATATTTTT-ATATTAAAAT-TAAATAA
1 AATATTTTTAAAATTAAAATATAAATAA
4888436 AATTATTTTTAAAATTA
1 AA-TATTTTTAAAATTA
4888453 TTAAATAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.19
27 15 0.42
28 14 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
AATATTTTTAAAATTAAAATATAAATAA
Found at i:4888773 original size:6 final size:6
Alignment explanation
Indices: 4888762--4888793 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
4888752 TCGATTAATT
4888762 AATTTA AATTTA AATTT- AATTT- AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATT
4888794 GATAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
AATTTA
Found at i:4888782 original size:11 final size:11
Alignment explanation
Indices: 4888760--4888793 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
4888750 ATTCGATTAA
4888760 TTAATTTAAAT
1 TTAATTTAAAT
4888771 TTAAATTT-AAT
1 TT-AATTTAAAT
4888782 TTAATTTAAAT
1 TTAATTTAAAT
4888793 T
1 T
4888794 GATAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 5 0.24
11 11 0.52
12 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TTAATTTAAAT
Found at i:4888864 original size:16 final size:16
Alignment explanation
Indices: 4888837--4888883 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
4888827 TCCGAACTTG
*
4888837 AAAATAATTCGAATTC
1 AAAATAACTCGAATTC
*
4888853 AAAATGACTCGAATTC
1 AAAATAACTCGAATTC
*
4888869 AAAATAATTCGAATT
1 AAAATAACTCGAATT
4888884 TGAACTGACG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.30
Consensus pattern (16 bp):
AAAATAACTCGAATTC
Found at i:4889742 original size:16 final size:16
Alignment explanation
Indices: 4889718--4889761 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
4889708 CCGATTGACC
*
4889718 CAAATCTAAAATAACT
1 CAAACCTAAAATAACT
4889734 CAAACCTAAAATAACT
1 CAAACCTAAAATAACT
* *
4889750 CGAACCTGAAAT
1 CAAACCTAAAAT
4889762 GATCCAAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.52, C:0.23, G:0.05, T:0.20
Consensus pattern (16 bp):
CAAACCTAAAATAACT
Found at i:4890195 original size:49 final size:50
Alignment explanation
Indices: 4890102--4890198 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
4890092 GCTATTACCC
* * *
4890102 TTTTTACTTTTGACTTTTGATGTTTCCTTTTTATTTTATTTTTTGTTATT
1 TTTTTACTTTTAACTTTTGATGTTTCCATTTTATTTTATATTTTGTTATT
*
4890152 TTTTTAGTTTTAACTTCTT-ATGTTT-CATTTTATTTT-TCATTTTGTTA
1 TTTTTACTTTTAACTT-TTGATGTTTCCATTTTATTTTAT-ATTTTGTTA
4890199 GATCTTCAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.02
49 18 0.44
50 20 0.49
51 2 0.05
ACGTcount: A:0.14, C:0.08, G:0.07, T:0.70
Consensus pattern (50 bp):
TTTTTACTTTTAACTTTTGATGTTTCCATTTTATTTTATATTTTGTTATT
Found at i:4890566 original size:15 final size:17
Alignment explanation
Indices: 4890541--4890577 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
4890531 TCAATGAAAT
4890541 TAATATTAAATTT-AAA
1 TAATATTAAATTTAAAA
4890557 TAAT-TTAAATTTAAAA
1 TAATATTAAATTTAAAA
4890573 TAATA
1 TAATA
4890578 AAAGGAGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATATTAAATTTAAAA
Found at i:4890573 original size:16 final size:16
Alignment explanation
Indices: 4890509--4890577 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 16
4890499 TTAAAAAAAA
*
4890509 ATTAAGTTTAAATAAT
1 ATTAAATTTAAATAAT
4890525 A-TAAATTCAATGAAATTAAT
1 ATTAAATT---T-AAA-TAAT
4890545 ATTAAATTTAAATAAT
1 ATTAAATTTAAATAAT
4890561 -TTAAATTTAAAATAAT
1 ATTAAATTT-AAATAAT
4890577 A
1 A
4890578 AAAGGAGATG
Statistics
Matches: 44, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
15 13 0.30
16 12 0.27
17 3 0.07
18 2 0.05
19 3 0.07
20 5 0.11
21 6 0.14
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTAAATTTAAATAAT
Found at i:4895154 original size:24 final size:26
Alignment explanation
Indices: 4895118--4895180 Score: 62
Period size: 24 Copynumber: 2.6 Consensus size: 26
4895108 GCCCTGTTAC
* * *
4895118 GATGCACAGAGAGGACCTA-GT-TAT
1 GATGCTCAAAGAGGACCCACGTGTAT
*
4895142 GATGGTCAAAGA-G-CCCACGTGTAT
1 GATGCTCAAAGAGGACCCACGTGTAT
4895166 GATGCTCAAAGAGGA
1 GATGCTCAAAGAGGA
4895181 TCTGCGAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
22 3 0.10
23 3 0.10
24 23 0.77
25 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.19
Consensus pattern (26 bp):
GATGCTCAAAGAGGACCCACGTGTAT
Found at i:4896448 original size:22 final size:20
Alignment explanation
Indices: 4896410--4896449 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
4896400 TAAAGATAAA
*
4896410 ATTATAAATTTACCTTGTAT
1 ATTATAAATTTAACTTGTAT
4896430 ATTATTAAATTTTAACTTGT
1 ATTA-TAAA-TTTAACTTGT
4896450 GCTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTATAAATTTAACTTGTAT
Found at i:4900235 original size:14 final size:13
Alignment explanation
Indices: 4900211--4900262 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
4900201 AAGATCCTTG
4900211 AAATTTAAAAAAT
1 AAATTTAAAAAAT
4900224 AAATTATAAAAAAT
1 AAATT-TAAAAAAT
*
4900238 -AATTTGGATAAAATT
1 AAATTT--A-AAAAAT
4900253 AAATTTAAAA
1 AAATTTAAAA
4900263 GGTATATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
12 1 0.03
13 12 0.36
14 10 0.30
15 5 0.15
16 5 0.15
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (13 bp):
AAATTTAAAAAAT
Done.