Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 34 of 47
Found at i:5577553 original size:20 final size:20
Alignment explanation
Indices: 5577506--5577580 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
5577496 AAAAAGACAT
*
5577506 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
5577525 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
5577546 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
5577566 AATGTATCGATACAT
1 AATGTATCGATACAT
5577581 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:5577574 original size:40 final size:39
Alignment explanation
Indices: 5577503--5577580 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
5577493 GGTAAAAAGA
* *
5577503 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
5577542 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
5577581 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:5577901 original size:51 final size:50
Alignment explanation
Indices: 5577841--5577966 Score: 182
Period size: 51 Copynumber: 2.5 Consensus size: 50
5577831 AAATAACGGG
* ** *
5577841 GTTGGAGTATCCCCGATGGTGAAAAGTTGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATGATGAAAA-TAAGTGTTTTAGAAATAAAATCGGA
*
5577892 GTTGGAGTATCCCCGATTATGGAAAATAAGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATGAT-GAAAATAAGTGTTTTAGAAATAAAATCGGA
5577943 GTTGGAGTATCCCCGA-GATGAAAA
1 GTTGGAGTATCCCCGATGATGAAAA
5577967 ATCTAAAAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
49 5 0.07
50 2 0.03
51 56 0.82
52 5 0.07
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATGATGAAAATAAGTGTTTTAGAAATAAAATCGGA
Found at i:5580343 original size:21 final size:21
Alignment explanation
Indices: 5580319--5580360 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
5580309 GTATCGATAC
*
5580319 AATGTATTGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
5580340 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
5580361 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:5580395 original size:13 final size:13
Alignment explanation
Indices: 5580377--5580460 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
5580367 AGCTTCGTAG
5580377 CGATACATTGTAT
1 CGATACATTGTAT
5580390 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
5580409 CGATACATTGTAT
1 CGATACATTGTAT
5580422 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
*
5580441 CGATGCATTGTAT
1 CGATACATTGTAT
5580454 CGATACA
1 CGATACA
5580461 ACACTTATGT
Statistics
Matches: 57, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
13 25 0.44
14 1 0.02
15 2 0.04
16 7 0.12
17 2 0.04
18 1 0.02
19 19 0.33
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:5580409 original size:19 final size:18
Alignment explanation
Indices: 5580385--5580479 Score: 84
Period size: 19 Copynumber: 5.7 Consensus size: 18
5580375 AGCGATACAT
5580385 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
5580404 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
5580417 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
5580436 TGTATCGATGC--A--T-
1 TGTATCGATACAAACTTA
5580449 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
5580468 TGTATCGATACA
1 TGTATCGATACA
5580480 TTTTCTGTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 21 0.34
14 2 0.03
16 4 0.06
18 2 0.03
19 33 0.53
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:5580418 original size:32 final size:32
Alignment explanation
Indices: 5580377--5580481 Score: 192
Period size: 32 Copynumber: 3.3 Consensus size: 32
5580367 AGCTTCGTAG
*
5580377 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
5580409 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
5580441 CGATGCATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
5580473 CGATACATT
1 CGATACATT
5580482 TTCTGTTTGT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 70 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:5580509 original size:19 final size:19
Alignment explanation
Indices: 5580448--5580509 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
5580438 TATCGATGCA
*
5580448 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ATTGT
* **
5580467 ATGTATCGATACATTTTCTGT
1 TTGTATCGATACA-AAT-TGT
5580488 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAATTGT
5580507 TTG
1 TTG
5580510 AAATTCAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 18 0.55
20 2 0.06
21 13 0.39
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (19 bp):
TTGTATCGATACAAATTGT
Found at i:5581969 original size:20 final size:19
Alignment explanation
Indices: 5581940--5581980 Score: 73
Period size: 20 Copynumber: 2.1 Consensus size: 19
5581930 AGCCCAACGG
5581940 TTATAATTATATCGATACA
1 TTATAATTATATCGATACA
5581959 TTATGAATTATATCGATACA
1 TTAT-AATTATATCGATACA
5581979 TT
1 TT
5581981 GAGTCCAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (19 bp):
TTATAATTATATCGATACA
Found at i:5582455 original size:34 final size:33
Alignment explanation
Indices: 5582417--5582546 Score: 151
Period size: 34 Copynumber: 3.9 Consensus size: 33
5582407 TGAAGTAATT
*
5582417 GAGAGGTTCTATCTTAAG-CTTTGAAAAAGATTAG
1 GAGAGGTTCTATCTT-AGCCTGTG-AAAAGATTAG
*
5582451 GAGAGCGGTTCTATCTTAGCCTGTGAAAAGATAATG
1 GAGA--GGTTCTATCTTAGCCTGTGAAAAGATTA-G
*
5582487 AAGAGGTTCTATCTTAGCCTGTGAAAAGA-TAG
1 GAGAGGTTCTATCTTAGCCTGTGAAAAGATTAG
*
5582519 G-GAGGTTCTATCTTAGCCT-TCAAAAGAT
1 GAGAGGTTCTATCTTAGCCTGTGAAAAGAT
5582547 AATTTTATAA
Statistics
Matches: 85, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
30 7 0.08
31 18 0.21
32 1 0.01
33 1 0.01
34 29 0.34
35 10 0.12
36 19 0.22
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (33 bp):
GAGAGGTTCTATCTTAGCCTGTGAAAAGATTAG
Found at i:5584199 original size:21 final size:22
Alignment explanation
Indices: 5584175--5584226 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
5584165 GAACTAGAGG
5584175 AGAAAATGAATGAGTTG-AAAA
1 AGAAAATGAATGAGTTGCAAAA
*
5584196 AGAAAA-GAAATGAGTTGCAAGA
1 AGAAAATG-AATGAGTTGCAAAA
5584218 AGAAAATGA
1 AGAAAATGA
5584227 TGAATTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 1 0.04
21 15 0.56
22 10 0.37
23 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.25, T:0.15
Consensus pattern (22 bp):
AGAAAATGAATGAGTTGCAAAA
Found at i:5585059 original size:13 final size:13
Alignment explanation
Indices: 5585041--5585065 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5585031 CATTTTATGG
5585041 TGTATCGATACAA
1 TGTATCGATACAA
5585054 TGTATCGATACA
1 TGTATCGATACA
5585066 TACTTTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5585081 original size:32 final size:33
Alignment explanation
Indices: 5585018--5585085 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
5585008 CGTTACAAGC
*
5585018 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATCTTATGGTGTATCGATA
5585051 CAATGTATCGATACATACTT-T-GTGTATCGATA
1 CAATGTATCGATACAT-CTTATGGTGTATCGATA
5585083 CAA
1 CAA
5585086 GTTTGGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 17 0.52
34 2 0.06
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATCTTATGGTGTATCGATA
Found at i:5587544 original size:24 final size:25
Alignment explanation
Indices: 5587517--5587566 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
5587507 ATATTGAGAA
5587517 AGAAAAA-GGGAAGAAAAAGTTTAT
1 AGAAAAAGGGGAAGAAAAAGTTTAT
* *
5587541 AGAAAAAGGGGGAGAAATAGTTTAT
1 AGAAAAAGGGGAAGAAAAAGTTTAT
5587566 A
1 A
5587567 AAATTCGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.18
Consensus pattern (25 bp):
AGAAAAAGGGGAAGAAAAAGTTTAT
Found at i:5588174 original size:33 final size:32
Alignment explanation
Indices: 5588132--5588197 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
5588122 ACACACCCAG
5588132 TTGTATCGATACATATTGCTTAGTATCGATACA
1 TTGTATCGATACATATT-CTTAGTATCGATACA
* * * *
5588165 TTGTATCGATATATGTTCTTTGTCTCGATACA
1 TTGTATCGATACATATTCTTAGTATCGATACA
5588197 T
1 T
5588198 GTTTTTTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (32 bp):
TTGTATCGATACATATTCTTAGTATCGATACA
Found at i:5588192 original size:19 final size:19
Alignment explanation
Indices: 5588165--5588215 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
5588155 TATCGATACA
*
5588165 TTGTATCGATATATGTTCT
1 TTGTATCGATACATGTTCT
* *
5588184 TTGTCTCGATACATGTTTT
1 TTGTATCGATACATGTTCT
5588203 TTGTATCGATACA
1 TTGTATCGATACA
5588216 CCGTAAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGTATCGATACATGTTCT
Found at i:5588817 original size:36 final size:34
Alignment explanation
Indices: 5588772--5588902 Score: 157
Period size: 34 Copynumber: 3.9 Consensus size: 34
5588762 CGAAGTGATT
5588772 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAAGGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAA-GA
5588808 GAGAGGTTCTATCTTAG-CTTGTGAAAAGATAATGA
1 GAGAGGTTCTATCTTAGCCTT-TGAAAAGATAA-GA
*
5588843 -AGAGGTTCTATCTTAGCCTATGAAAAGAT-AG-
1 GAGAGGTTCTATCTTAGCCTTTGAAAAGATAAGA
* *
5588874 G-GAGGTTTTATCTTAGCC-TTCAAAAGATA
1 GAGAGGTTCTATCTTAGCCTTTGAAAAGATA
5588903 GTATTCTAAG
Statistics
Matches: 86, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
30 8 0.09
31 16 0.19
32 1 0.01
33 1 0.01
34 25 0.29
35 16 0.19
36 19 0.22
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (34 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAAGA
Found at i:5590463 original size:14 final size:16
Alignment explanation
Indices: 5590444--5590476 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
5590434 TATCTATAGA
5590444 AAACTA-TA-GAAAAG
1 AAACTATTACGAAAAG
5590458 AAACTATTACGAAAAG
1 AAACTATTACGAAAAG
5590474 AAA
1 AAA
5590477 TAATTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 2 0.12
16 9 0.53
ACGTcount: A:0.64, C:0.09, G:0.12, T:0.15
Consensus pattern (16 bp):
AAACTATTACGAAAAG
Found at i:5591877 original size:13 final size:13
Alignment explanation
Indices: 5591859--5591905 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
5591849 AATTTCTTTA
5591859 TTTTTTCTCTCTC
1 TTTTTTCTCTCTC
* *
5591872 TTTTTTCTCTTTT
1 TTTTTTCTCTCTC
5591885 TTTTTTCTCTCTAC
1 TTTTTTCTCTCT-C
5591899 TTTTTTC
1 TTTTTTC
5591906 CTATGAGCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 22 0.76
14 7 0.24
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTCTCTCTC
Found at i:5591889 original size:26 final size:27
Alignment explanation
Indices: 5591853--5591905 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
5591843 CTCGTAAATT
5591853 TCTTTATTTTTTCTCTCT-CTTTTTTC
1 TCTTTATTTTTTCTCTCTACTTTTTTC
*
5591879 TCTTTTTTTTTTCTCTCTACTTTTTTC
1 TCTTTATTTTTTCTCTCTACTTTTTTC
5591906 CTATGAGCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.74
Consensus pattern (27 bp):
TCTTTATTTTTTCTCTCTACTTTTTTC
Found at i:5592680 original size:166 final size:165
Alignment explanation
Indices: 5592459--5592966 Score: 589
Period size: 168 Copynumber: 3.1 Consensus size: 165
5592449 GTTTGAATCG
* * *
5592459 AGAAAAATCCTCCCAAAAACATTTATGAAATAGAGAACTCGGTTTTTT-AAAAATAAGAGAATTT
1 AGAAAAATCCTCCCAAAAATATTTATGAAATAGAAAACTC-GTTTTTTCGAAAATAAGAGAATTT
* * *
5592523 AAAAAGAAAAATGAAAAACTTAT-AAATATAAATGAATTTCTCAAAACTGATTTATAATAAATTA
65 CAAGAGAAAAATGAAAAACTTATGAAA-ATAAATGAATTTTTCAAAACT-ATTTATAATAAATTA
5592587 AATGATGATATATGATGAATTTTAAAATTTATAAACGA
128 AATGATGATATATGATGAATTTTAAAATTTATAAACGA
* *
5592625 AGAAAAATCCCCCCAAAAATATTTATTG-AATGGAAAACTCGTTTTTTCGAAAATAAGAGAATTT
1 AGAAAAATCCTCCCAAAAATATTTA-TGAAATAGAAAACTCGTTTTTTCGAAAATAAGAGAATTT
* * * * * *
5592689 CAAGAG-AAAATGAACAATTTATGAAAATAAATGATTTTTTTTTCAAAACTAATCTATTATGAAT
65 CAAGAGAAAAATGAAAAACTTATGAAAATAAATGA---ATTTTTCAAAACT-ATTTATAATAAAT
* * * * *
5592753 TAATTGATGATATATGATGAATATAAAAATTTATTAACGT
126 TAAATGATGATATATGATGAATTTTAAAATTTATAAACGA
* * *
5592793 AGAAAAATCCTCCCGAAAATATTTATGCAATAGAAAACTC-TATTTTTCGAAAATAAGAAAATTT
1 AGAAAAATCCTCCCAAAAATATTTATGAAATAGAAAACTCGT-TTTTTCGAAAATAAGAGAATTT
* *
5592857 CAAGA-AAAAATGAAAAACTTATGAAAATAAATGAATTTTTCAAAACTAATT-GAATGACAATTA
65 CAAGAGAAAAATGAAAAACTTATGAAAATAAATGAATTTTTCAAAACTATTTATAAT-A-AATTA
** * * * *
5592920 AATGACAATATTTAATGAATTTTAAAAATTATAAACCA
128 AATGATGATATATGATGAATTTTAAAATTTATAAACGA
*
5592958 AAAAAAATC
1 AGAAAAATC
5592967 TTCAAAGAAA
Statistics
Matches: 287, Mismatches: 44, Indels: 23
0.81 0.12 0.06
Matches are distributed among these distances:
163 2 0.01
164 2 0.01
165 81 0.28
166 55 0.19
167 5 0.02
168 142 0.49
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.31
Consensus pattern (165 bp):
AGAAAAATCCTCCCAAAAATATTTATGAAATAGAAAACTCGTTTTTTCGAAAATAAGAGAATTTC
AAGAGAAAAATGAAAAACTTATGAAAATAAATGAATTTTTCAAAACTATTTATAATAAATTAAAT
GATGATATATGATGAATTTTAAAATTTATAAACGA
Found at i:5594452 original size:304 final size:304
Alignment explanation
Indices: 5593913--5594461 Score: 721
Period size: 304 Copynumber: 1.8 Consensus size: 304
5593903 TTAAGTGATC
* * * * *
5593913 TTTCAATTCCATCCATAATTTATAGCCTACTGACACAATTCCATAACCATATTCCATGATTAGAT
1 TTTCAATTCCATCCATAACTCATAGCCTACTGAAAAAATTCCACAACCATATTCCATGATTAGAT
* *
5593978 GCCTTATGACTCGCTATAAACTTACCTACCATGGTGGAAGAAACTACGAATGTTTGCTTAGCACT
66 GCCTTATGACACACTATAAACTTACCTACCATGGTGGAAGAAACTACGAATGTTTGCTTAGCACT
* * * *
5594043 CTTCCAGAAGATAGCTTCCCTAACAAATAGATAAATATAGTTCGATATAGATTTCATATTATTTT
131 CTTCCAGAAGATAGCTTACCTAACAAACAGATAAATATAGTTCGATATAGATTTCATACTATCTT
* * *
5594108 GGCATCTAGCAAAATCAGAGTCTAAGTACTCGATGATCTCTAACTAATCCATAAGTCTTGTTAGG
196 GACATCTAGCAAAATCAGAGTCTAAGTACCCAATGATCTCTAACTAATCCATAAGTCTTGTTAGG
5594173 ATAAAAAGCTACTAACCTATTGTTATAAAGCAAGTTAAGTGGCT
261 ATAAAAAGCTACTAACCTATTGTTATAAAGCAAGTTAAGTGGCT
* * *
5594217 TTTCAATTTCATCCATAACTCATAGCCTAGTGAAAAAATTCCGCAACCATATTCCATGATTTA-A
1 TTTCAATTCCATCCATAACTCATAGCCTACTGAAAAAATTCCACAACCATATTCCATGA-TTAGA
* * * * * * *
5594281 TGCCTTATTACACATTATAAACTTAGCTGCCATGGTGGAAGAAGCTATGAGTGTTTGCTTAGCAC
65 TGCCTTATGACACACTATAAACTTACCTACCATGGTGGAAGAAACTACGAATGTTTGCTTAGCAC
* * * * * * *
5594346 TTTTTCTAGAA-ATAGCTTAACC-AACAAGCCGATAAATATAGTTTGATGTGGATTTCATACTAT
130 -TCTTCCAGAAGATAGCTT-ACCTAACAAACAGATAAATATAGTTCGATATAGATTTCATACTAT
* *
5594409 CTTGACATCTAGCAAAGTC-GACGTCTGAA-TACCCAATGATCTCTAATTAATCC
193 CTTGACATCTAGCAAAATCAGA-GTCT-AAGTACCCAATGATCTCTAACTAATCC
5594462 TACCTCTTGT
Statistics
Matches: 207, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
303 2 0.01
304 190 0.92
305 15 0.07
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (304 bp):
TTTCAATTCCATCCATAACTCATAGCCTACTGAAAAAATTCCACAACCATATTCCATGATTAGAT
GCCTTATGACACACTATAAACTTACCTACCATGGTGGAAGAAACTACGAATGTTTGCTTAGCACT
CTTCCAGAAGATAGCTTACCTAACAAACAGATAAATATAGTTCGATATAGATTTCATACTATCTT
GACATCTAGCAAAATCAGAGTCTAAGTACCCAATGATCTCTAACTAATCCATAAGTCTTGTTAGG
ATAAAAAGCTACTAACCTATTGTTATAAAGCAAGTTAAGTGGCT
Found at i:5598769 original size:2 final size:2
Alignment explanation
Indices: 5598762--5598812 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
5598752 ATGTTGCTCA
*
5598762 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5598804 AT AT AT AT A
1 AT AT AT AT A
5598813 AACATACCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:5600344 original size:79 final size:77
Alignment explanation
Indices: 5600231--5600607 Score: 285
Period size: 79 Copynumber: 4.8 Consensus size: 77
5600221 ATCGTGGATA
*
5600231 GAGTATCCCCTCGAAAATGATGGGATT-GAGTATCCTCGATAGTGAAAAATCAATATTTTGAAAA
1 GAGTATCCCCTC-AAAATGATGGG-TTGGAGTATCCTCGATAGTGAAAAATTAATATTTTGAAAA
* *
5600295 TAAAAATGAGGTTG
64 TAAAAACGAGATTG
* * * *
5600309 GAGTATCCTCTCAAAGATGATAGGGTTGGAGTATCCTTGAGA-TGAAAATTTTAATATTTTGAAA
1 GAGTATCCCCTCAAA-ATGAT-GGGTTGGAGTATCCTCGATAGTGAAAA-ATTAATATTTTGAAA
* * * *
5600373 GTCAAAACGGGGTTG
63 ATAAAAACGAGATTG
* * ** * * * *
5600388 GAATATCCTCTTGGAAATGATGGGATTGGAATATCCCCGATGGTGAAAAAATTAATATTTTGGAA
1 GAGTATCC-CCTCAAAATGATGGG-TTGGAGTATCCTCGATAGTG-AAAAATTAATATTTTGAAA
**
5600453 ATAAAAATAAGATTG
63 ATAAAAACGAGATTG
** * * *
5600468 GAGTATCCCCTCAGTGATGATGGGTCGGAGTATCCTCGAGA-TGAAAATTTTAATATTTT-AGAA
1 GAGTATCCCCTCA-AAATGATGGGTTGGAGTATCCTCGATAGTGAAAA-ATTAATATTTTGA-AA
* *
5600531 GTAAAAACGAGATTA
63 ATAAAAACGAGATTG
* * ** * * *
5600546 GAGTATCCCCTTGGAAAACGATAAAGTTGGATTATCCTCGATGGTGAAAAATTGATATTTTG
1 GAGTATCCCC-T-CAAAATGAT-GGGTTGGAGTATCCTCGATAGTGAAAAATTAATATTTTG
5600608 GAGGGAGAAA
Statistics
Matches: 227, Mismatches: 56, Indels: 29
0.73 0.18 0.09
Matches are distributed among these distances:
77 7 0.03
78 62 0.27
79 82 0.36
80 66 0.29
81 10 0.04
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (77 bp):
GAGTATCCCCTCAAAATGATGGGTTGGAGTATCCTCGATAGTGAAAAATTAATATTTTGAAAATA
AAAACGAGATTG
Found at i:5600523 original size:158 final size:159
Alignment explanation
Indices: 5600229--5600609 Score: 468
Period size: 158 Copynumber: 2.4 Consensus size: 159
5600219 AAATCGTGGA
* * * * * *
5600229 TAGAGTATCCCC-TCGAAAATGATGGGATT-GAGTATCCTCGATAGTGAAAAATCAATATTTTGA
1 TAGAATATCCCCTTGGAAAATGATGGGATTGGAATATCCTCGATGGTGAAAAATTAATATTTTGG
* * * * *
5600292 AAATAAAAATGAGGTTGGAGTATCCTCTCAAAGATGATAGGGTTGGAGTATCCTTGAGATGAAAA
66 AAATAAAAATAAGATTGGAGTATCCCCTCAAAGATGATAGGGTCGGAGTATCCTCGAGATGAAAA
* * *
5600357 TTTTAATATTTT-GAAAGTCAAAACGGGGT
131 TTTTAATATTTTAG-AAGTAAAAACGAGAT
* * *
5600386 TGGAATATCCTCTTGG-AAATGATGGGATTGGAATATCCCCGATGGTGAAAAAATTAATATTTTG
1 TAGAATATCCCCTTGGAAAATGATGGGATTGGAATATCCTCGATGGTG-AAAAATTAATATTTTG
**
5600450 GAAATAAAAATAAGATTGGAGTATCCCCTCAGTGATGAT-GGGTCGGAGTATCCTCGAGATGAAA
65 GAAATAAAAATAAGATTGGAGTATCCCCTCAAAGATGATAGGGTCGGAGTATCCTCGAGATGAAA
5600514 ATTTTAATATTTTAGAAGTAAAAACGAGAT
130 ATTTTAATATTTTAGAAGTAAAAACGAGAT
* * ** * *
5600544 TAGAGTATCCCCTTGGAAAACGAT-AAAGTTGGATTATCCTCGATGGTGAAAAATTGATATTTTG
1 TAGAATATCCCCTTGGAAAATGATGGGA-TTGGAATATCCTCGATGGTGAAAAATTAATATTTTG
5600608 GA
65 GA
5600610 GGGAGAAATT
Statistics
Matches: 190, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
157 22 0.12
158 95 0.50
159 73 0.38
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (159 bp):
TAGAATATCCCCTTGGAAAATGATGGGATTGGAATATCCTCGATGGTGAAAAATTAATATTTTGG
AAATAAAAATAAGATTGGAGTATCCCCTCAAAGATGATAGGGTCGGAGTATCCTCGAGATGAAAA
TTTTAATATTTTAGAAGTAAAAACGAGAT
Found at i:5604769 original size:13 final size:13
Alignment explanation
Indices: 5604751--5604778 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
5604741 ATACAAAGAT
5604751 CAATGTATCGATA
1 CAATGTATCGATA
5604764 CAATGTATCGATA
1 CAATGTATCGATA
5604777 CA
1 CA
5604779 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:5604774 original size:33 final size:33
Alignment explanation
Indices: 5604732--5604798 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
5604722 AAATTTCCCA
5604732 AATGTATCGATACAAAGA-TCAATGTATCGATAC
1 AATGTATCGATACAAAGAGT-AATGTATCGATAC
**
5604765 AATGTATCGATACATTGAGTAATGTATCGATAC
1 AATGTATCGATACAAAGAGTAATGTATCGATAC
5604798 A
1 A
5604799 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
AATGTATCGATACAAAGAGTAATGTATCGATAC
Found at i:5604854 original size:19 final size:21
Alignment explanation
Indices: 5604830--5604882 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
5604820 AGCGATACAT
5604830 TGTATCGATACAA-CACT-TA
1 TGTATCGATACAATCACTGTA
* *
5604849 TGTATCGATACAATTACTGTT
1 TGTATCGATACAATCACTGTA
5604870 TGTATCGATACAA
1 TGTATCGATACAA
5604883 ATTGTTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.43
20 3 0.10
21 14 0.47
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (21 bp):
TGTATCGATACAATCACTGTA
Found at i:5606654 original size:21 final size:21
Alignment explanation
Indices: 5606628--5606681 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
5606618 GAGATGGTCC
5606628 TGTATCGATACATTTCA-GATA
1 TGTATCGATACA-TTCACGATA
* *
5606649 TGTATCGATACATTCACTATT
1 TGTATCGATACATTCACGATA
5606670 TGTATCGATACA
1 TGTATCGATACA
5606682 ATTTGTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (21 bp):
TGTATCGATACATTCACGATA
Found at i:5608456 original size:30 final size:31
Alignment explanation
Indices: 5608383--5608497 Score: 126
Period size: 30 Copynumber: 3.7 Consensus size: 31
5608373 AGACTAAAAC
* *
5608383 TTTTTAATAACTATTAAATTGTATGAGTAATTA
1 TTTTTAAT-ATTATCAAATT-TATGAGTAATTA
* * *
5608416 TATATAATATTATCAAATTTACGAGTAA-TA
1 TTTTTAATATTATCAAATTTATGAGTAATTA
* *
5608446 TTTTTAATATTATCAAATTTATAAATAATTA
1 TTTTTAATATTATCAAATTTATGAGTAATTA
*
5608477 TTTTTTAT-TTATCAAATTTAT
1 TTTTTAATATTATCAAATTTAT
5608498 AATTAATATC
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
30 38 0.54
31 17 0.24
32 9 0.13
33 6 0.09
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (31 bp):
TTTTTAATATTATCAAATTTATGAGTAATTA
Found at i:5608853 original size:18 final size:17
Alignment explanation
Indices: 5608832--5608919 Score: 90
Period size: 18 Copynumber: 5.0 Consensus size: 17
5608822 TGAGGGGAAT
5608832 AATATATATTTTTTAAAA
1 AATA-ATATTTTTTAAAA
*
5608850 AATAAT-TATATTT-AAA
1 AATAATAT-TTTTTAAAA
5608866 AATAATATTATTTTAAAA
1 AATAATATT-TTTTAAAA
* *
5608884 AATAATAATTTTTAAGTA
1 AATAATATTTTTTAA-AA
5608902 AATAATTATTTTTTAAAA
1 AATAA-TATTTTTTAAAA
5608920 TTAAAGATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
16 11 0.19
17 16 0.28
18 22 0.38
19 9 0.16
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (17 bp):
AATAATATTTTTTAAAA
Found at i:5608868 original size:16 final size:16
Alignment explanation
Indices: 5608847--5608935 Score: 63
Period size: 16 Copynumber: 5.2 Consensus size: 16
5608837 ATATTTTTTA
5608847 AAAAATAATTATATTT
1 AAAAATAATTATATTT
5608863 AAAAATAA-TATTATTTT
1 AAAAATAATTA-TA-TTT
* *
5608880 AAAAAATAATAATTTTT
1 -AAAAATAATTATATTT
*
5608897 AAGTAAATAATTATTTTTT
1 AA--AAATAATTA-TATTT
* **
5608916 AAAATTAAAGATATTT
1 AAAAATAATTATATTT
5608932 AAAA
1 AAAA
5608936 TGATAAGTAG
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
15 2 0.03
16 20 0.34
17 12 0.20
18 17 0.29
19 8 0.14
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
AAAAATAATTATATTT
Found at i:5608883 original size:34 final size:34
Alignment explanation
Indices: 5608832--5608919 Score: 115
Period size: 34 Copynumber: 2.5 Consensus size: 34
5608822 TGAGGGGAAT
*
5608832 AATATATATTTTTTAAAAAATAATTATATTTAA-A
1 AATA-ATATTTTTTAAAAAATAATAATATTTAAGA
*
5608866 AATAATATTATTTTAAAAAATAATAATTTTTAAGTA
1 AATAATATT-TTTTAAAAAATAATAATATTTAAG-A
5608902 AATAATTATTTTTTAAAA
1 AATAA-TATTTTTTAAAA
5608920 TTAAAGATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
33 5 0.10
34 25 0.52
36 14 0.29
37 4 0.08
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (34 bp):
AATAATATTTTTTAAAAAATAATAATATTTAAGA
Found at i:5609454 original size:15 final size:15
Alignment explanation
Indices: 5609434--5609466 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
5609424 TTTTTAATTA
5609434 GGTAATTGTCTATTT
1 GGTAATTGTCTATTT
*
5609449 GGTAATTGTTTATTT
1 GGTAATTGTCTATTT
5609464 GGT
1 GGT
5609467 CAATACAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.03, G:0.24, T:0.55
Consensus pattern (15 bp):
GGTAATTGTCTATTT
Found at i:5620509 original size:13 final size:13
Alignment explanation
Indices: 5620491--5620515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5620481 ATATCTTTTA
5620491 TAAACTCTAAAAT
1 TAAACTCTAAAAT
5620504 TAAACTCTAAAA
1 TAAACTCTAAAA
5620516 GTTTCTCATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
TAAACTCTAAAAT
Found at i:5627495 original size:28 final size:27
Alignment explanation
Indices: 5627451--5627517 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
5627441 AAATTTAGAA
* * *
5627451 TTTTCAATTTAACTTTTACATGTGAAAT
1 TTTTC-ATTAAACTTTTACATATAAAAT
*
5627479 TTTTCATTAAACTTTTTACCTATAAAAT
1 TTTTCATTAAAC-TTTTACATATAAAAT
*
5627507 TTTTAATTAAA
1 TTTTCATTAAA
5627518 TTCTCATGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 6 0.18
28 27 0.82
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (27 bp):
TTTTCATTAAACTTTTACATATAAAAT
Found at i:5628245 original size:23 final size:24
Alignment explanation
Indices: 5628214--5628259 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
5628204 AGAAGCTTAT
* *
5628214 ATAAGGAAAAAAA-AAAAGAAAAG
1 ATAAAGAAAAAAAGAAAACAAAAG
5628237 ATAAAGAAAAAAAGAAAACAAAA
1 ATAAAGAAAAAAAGAAAACAAAA
5628260 CAAGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.04
Consensus pattern (24 bp):
ATAAAGAAAAAAAGAAAACAAAAG
Found at i:5628267 original size:19 final size:19
Alignment explanation
Indices: 5628224--5628268 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
5628214 ATAAGGAAAA
* *
5628224 AAAAAAAGAAAAGATAAAG
1 AAAAAAAGAAAACATAAAC
5628243 AAAAAAAGAAAACA-AAAC
1 AAAAAAAGAAAACATAAAC
5628261 AAGAAAAA
1 AA-AAAAA
5628269 ATTTTGTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.82, C:0.04, G:0.11, T:0.02
Consensus pattern (19 bp):
AAAAAAAGAAAACATAAAC
Found at i:5628563 original size:26 final size:26
Alignment explanation
Indices: 5628534--5628617 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 26
5628524 TTCGTGTTAA
5628534 TTTATTTAATTCATTGCCTTTATTAT
1 TTTATTTAATTCATTGCCTTTATTAT
*
5628560 TTTATTTAATTTACTTG---TTA--A-
1 TTTATTTAATTCA-TTGCCTTTATTAT
* *
5628581 TTTATTTAATTCATTACCTTTGTTAT
1 TTTATTTAATTCATTGCCTTTATTAT
*
5628607 TTTGTTTAATT
1 TTTATTTAATT
5628618 TATTTTTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
20 2 0.04
21 12 0.26
22 1 0.02
23 2 0.04
24 3 0.07
25 1 0.02
26 22 0.48
27 3 0.07
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (26 bp):
TTTATTTAATTCATTGCCTTTATTAT
Found at i:5628586 original size:47 final size:47
Alignment explanation
Indices: 5628528--5628619 Score: 157
Period size: 47 Copynumber: 2.0 Consensus size: 47
5628518 TTAATGTTCG
*
5628528 TGTTAATTTATTTAATTCATTGCCTTTATTATTTTATTTAATTTACT
1 TGTTAATTTATTTAATTCATTACCTTTATTATTTTATTTAATTTACT
* *
5628575 TGTTAATTTATTTAATTCATTACCTTTGTTATTTTGTTTAATTTA
1 TGTTAATTTATTTAATTCATTACCTTTATTATTTTATTTAATTTA
5628620 TTTTTTTATA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.25, C:0.08, G:0.05, T:0.62
Consensus pattern (47 bp):
TGTTAATTTATTTAATTCATTACCTTTATTATTTTATTTAATTTACT
Found at i:5630828 original size:77 final size:77
Alignment explanation
Indices: 5630664--5630845 Score: 186
Period size: 77 Copynumber: 2.4 Consensus size: 77
5630654 CCCCTGAGGG
* * * * * *
5630664 TCATGTTTAGCACTTTCATGTTAAAACCGAGCTTTAAGGGTATTTTAATACTTTTATGTGATTTT
1 TCATG-TTAGTACTTTCATGTCAAAACCGAGCCTTAAGGGAATATTAATACTTTTATGTCATTTT
*
5630729 CAAACCTTAAGGT
65 CAAACCTTAAGGA
* * *
5630742 TGTAT-TTAGTACTTTCTTGTCAAAACCGAGCCTTGAGGGAATATTAATACTTTTATGTCATTTT
1 T-CATGTTAGTACTTTCATGTCAAAACCGAGCCTTAAGGGAATATTAATACTTTTATGTCATTTT
** * *
5630806 TGAAGCTTTAGGA
65 CAAACCTTAAGGA
** *
5630819 TCATGTTAGTGTTTTCATGTCTAAACC
1 TCATGTTAGTACTTTCATGTCAAAACC
5630846 AAACCACTAA
Statistics
Matches: 83, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
76 2 0.02
77 78 0.94
78 1 0.01
79 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.42
Consensus pattern (77 bp):
TCATGTTAGTACTTTCATGTCAAAACCGAGCCTTAAGGGAATATTAATACTTTTATGTCATTTTC
AAACCTTAAGGA
Found at i:5631222 original size:20 final size:20
Alignment explanation
Indices: 5631197--5631268 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 20
5631187 TACCCAGATT
*
5631197 TATCGATACATTTTTCAATA
1 TATCGATACATTTTTCAATG
* * *
5631217 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATG
* *
5631237 TATCGATATATTCTTCAATG
1 TATCGATACATTTTTCAATG
5631257 TATCGATACATT
1 TATCGATACATT
5631269 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:5641759 original size:13 final size:13
Alignment explanation
Indices: 5641741--5641768 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
5641731 TACATAAAAT
5641741 ATTGTATTGATAC
1 ATTGTATTGATAC
5641754 ATTGTATTGATAC
1 ATTGTATTGATAC
5641767 AT
1 AT
5641769 AAGTTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.46
Consensus pattern (13 bp):
ATTGTATTGATAC
Found at i:5641847 original size:13 final size:13
Alignment explanation
Indices: 5641829--5641853 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5641819 ATTACTCAAA
5641829 TGTATCGATACAT
1 TGTATCGATACAT
5641842 TGTATCGATACA
1 TGTATCGATACA
5641854 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5655379 original size:6 final size:6
Alignment explanation
Indices: 5655360--5655426 Score: 68
Period size: 6 Copynumber: 11.2 Consensus size: 6
5655350 GGCGTCCTTC
*
5655360 ACAAAA A-AAAA ACAACAA CAAAAAA ACAAAA ACAAAA A-AAAA ACAAAA
1 ACAAAA ACAAAA ACAA-AA -ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA
*
5655408 A-AACAA AAAAAA ACAAAA A
1 ACAA-AA ACAAAA ACAAAA A
5655427 ACGGTTTAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
5 12 0.23
6 31 0.60
7 6 0.12
8 3 0.06
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (6 bp):
ACAAAA
Found at i:5655388 original size:25 final size:24
Alignment explanation
Indices: 5655360--5655428 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 24
5655350 GGCGTCCTTC
*
5655360 ACAAAAAAAAAACAACAACAAAAAA
1 ACAAAAAAAAAA-AAAAACAAAAAA
5655385 ACAAAAACAAAAAAAAAACAAAAAA
1 ACAAAAA-AAAAAAAAAACAAAAAA
5655410 ACAAAAAAAAACAAAAAAC
1 ACAAAAAAAAA-AAAAAAC
5655429 GGTTTAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 4 0.10
25 32 0.78
26 5 0.12
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (24 bp):
ACAAAAAAAAAAAAAAACAAAAAA
Found at i:5655421 original size:18 final size:18
Alignment explanation
Indices: 5655362--5655427 Score: 91
Period size: 18 Copynumber: 3.7 Consensus size: 18
5655352 CGTCCTTCAC
*
5655362 AAAAAA-AAAACAACAACA
1 AAAAAACAAAAAAACAA-A
*
5655380 AAAAAACAAAAACA-AAA
1 AAAAAACAAAAAAACAAA
5655397 AAAAAACAAAAAAACAAA
1 AAAAAACAAAAAAACAAA
5655415 AAAAAACAAAAAA
1 AAAAAACAAAAAA
5655428 CGGTTTAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 14 0.33
18 24 0.56
19 5 0.12
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAACAAAAAAACAAA
Found at i:5655425 original size:17 final size:17
Alignment explanation
Indices: 5655362--5655428 Score: 84
Period size: 17 Copynumber: 3.9 Consensus size: 17
5655352 CGTCCTTCAC
*
5655362 AAAAAAA-AAACAACAA
1 AAAAAAACAAAAAACAA
5655378 CAAAAAAAC-AAAAACAAA
1 -AAAAAAACAAAAAAC-AA
5655396 AAAAAAACAAAAAAACAA
1 AAAAAAAC-AAAAAACAA
5655414 AAAAAAACAAAAAAC
1 AAAAAAACAAAAAAC
5655429 GGTTTAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
17 27 0.60
18 12 0.27
19 6 0.13
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAAAACAA
Found at i:5655441 original size:1 final size:1
Alignment explanation
Indices: 5655362--5655427 Score: 60
Period size: 1 Copynumber: 66.0 Consensus size: 1
5655352 CGTCCTTCAC
* * * * * * * *
5655362 AAAAAAAAAACAACAACAAAAAAACAAAAACAAAAAAAAAACAAAAAAACAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5655427 A
1 A
5655428 CGGTTTAAAA
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:5655876 original size:13 final size:13
Alignment explanation
Indices: 5655858--5655882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5655848 TACATAAAAT
5655858 ATTGTATCGATAC
1 ATTGTATCGATAC
5655871 ATTGTATCGATA
1 ATTGTATCGATA
5655883 AATAAGTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:5655900 original size:32 final size:33
Alignment explanation
Indices: 5655839--5655903 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
5655829 TTTCAACGAT
*
5655839 TTGTATCGATACATAAAATATTGTATCGATACA
1 TTGTATCGATAAATAAAATATTGTATCGATACA
* *
5655872 TTGTATCGATAAAT-AAGTTTTGTATCGATACA
1 TTGTATCGATAAATAAAATATTGTATCGATACA
5655904 ATTTAAGCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (33 bp):
TTGTATCGATAAATAAAATATTGTATCGATACA
Found at i:5655964 original size:13 final size:13
Alignment explanation
Indices: 5655946--5655970 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5655936 ATTACTCAAA
5655946 TGTATCGATACAT
1 TGTATCGATACAT
5655959 TGTATCGATACA
1 TGTATCGATACA
5655971 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5656022 original size:52 final size:52
Alignment explanation
Indices: 5655979--5656107 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
5655969 CACTGATCTT
*
5655979 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
* *
5656031 TATATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
5656083 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
5656108 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
Found at i:5663009 original size:11 final size:10
Alignment explanation
Indices: 5662991--5663042 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
5662981 CTTTACACCC
5662991 ACAAAAAAAA
1 ACAAAAAAAA
**
5663001 TTAAAAAAAA
1 ACAAAAAAAA
5663011 ACAAAAAAAA
1 ACAAAAAAAA
5663021 ACAAAACAAAA
1 ACAAAA-AAAA
5663032 A-AAAAGAAAA
1 ACAAAA-AAAA
5663042 A
1 A
5663043 ATAGCAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
10 31 0.86
11 5 0.14
ACGTcount: A:0.87, C:0.08, G:0.02, T:0.04
Consensus pattern (10 bp):
ACAAAAAAAA
Found at i:5663021 original size:15 final size:15
Alignment explanation
Indices: 5663003--5663042 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
5662993 AAAAAAAATT
5663003 AAAAAAAAACAAAAA
1 AAAAAAAAACAAAAA
*
5663018 AAAACAAAACAAAAA
1 AAAAAAAAACAAAAA
5663033 AAAAGAAAAA
1 AAAA-AAAAA
5663043 ATAGCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.90, C:0.07, G:0.03, T:0.00
Consensus pattern (15 bp):
AAAAAAAAACAAAAA
Found at i:5664365 original size:28 final size:28
Alignment explanation
Indices: 5664296--5665221 Score: 1082
Period size: 28 Copynumber: 32.5 Consensus size: 28
5664286 GCGGCACCAT
* *
5664296 TTTCAAAGCCCACATGTCAGTGGCACCTT
1 TTTCAAAGCCCACAAGTCAGTGGCA-CTC
*
5664325 TTTCAAAACCCACAAGTCAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
5664353 TTTCAAAGCCCACAAGTCAGTGGCAC-C
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* * *
5664380 TTTTCGAAGCCCACAAGTCGGTGGCACCC
1 -TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5664409 TTTTCAAAACCCACAAGTCAGTGGCACTC
1 -TTTCAAAGCCCACAAGTCAGTGGCACTC
5664438 TTTTCAAAGCCCACAAGTCAGTGGCACTC
1 -TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5664467 TTTTCAAAGCCCACAAGTTAGTGGCA-TCC
1 -TTTCAAAGCCCACAAGTCAGTGGCACT-C
5664496 TTTCAAAGCCCACAAGTCAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5664524 TTTCAAAGCCCATAAGTCAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACT-C
*
5664552 TTTCAAAGCCCATAAGTCAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* *
5664580 TTTCAAAGCCCACAAATCAGTGGTAC-C
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
5664607 TTTTC-AAGCCCACAAGTCAGTGGCA-TCC
1 -TTTCAAAGCCCACAAGTCAGTGGCACT-C
5664635 TTTCAAAGCCCACAAGTCAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
5664663 TTTCAAAGCCCACAAGTCAGTGGCAC-C
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5664690 TTTTC-AAGCCCACAAGTTAGTGGCACTC
1 -TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5664718 TTTCAAAGCCCATAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACT-C
* * *
5664747 TTTTAGAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* * *
5664775 TTTCGAAGCCCACAAGTCGGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* * *
5664803 TTGCGAAGCCCACAATTCAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* *
5664831 TTTCAAAGCCCACAAGTCAATGGGAC-C
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
5664858 TTTTCAAAGCCCACACAAGTCAGTGGCACTCC
1 -TTTCAAAG-CC-CACAAGTCAGTGGCACT-C
*
5664890 TTTTAAAGCCCACGCAAGTCAGTGGCAC-C
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTC
**
5664919 TTTTCAAAGCCCATGAGTCAGTGGCACTC
1 -TTTCAAAGCCCACAAGTCAGTGGCACTC
* * *
5664948 TTTCAAAGCCCACAGGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
** *
5664976 TTTTGAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* * * * *
5665004 TTGCGAAGCCTACAATTCAGTGGCACTA
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
* *
5665032 TTTCAAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
5665060 TTTCAAAGCCCACACAAGTCAGTGGCACTCC
1 TTTCAAAG-CC-CACAAGTCAGTGGCACT-C
* * *
5665091 TTTTAGAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5665119 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTC
*
5665147 TTTCAAAGCCCACGCAAGTCAGTGGCACCC
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTC
* ** *
5665177 TTTTC-AAGCCCACGCAAGCCAGTAACATTC
1 -TTTCAAAGCCCA--CAAGTCAGTGGCACTC
5665207 TTTTCAAAGCCCACA
1 -TTTCAAAGCCCACA
5665222 CGTGTCAGTA
Statistics
Matches: 787, Mismatches: 79, Indels: 62
0.85 0.09 0.07
Matches are distributed among these distances:
27 51 0.06
28 455 0.58
29 156 0.20
30 85 0.11
31 39 0.05
32 1 0.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCACTC
Found at i:5665210 original size:30 final size:31
Alignment explanation
Indices: 5665055--5665220 Score: 116
Period size: 30 Copynumber: 5.6 Consensus size: 31
5665045 AAGTTAGTGG
* * **
5665055 CACCC-TTTCAAAGCCCACACAAGTCAGTGG
1 CACCCTTTTCAAAGCCCACGCAAGCCAGTAA
* * **
5665085 CACTCCTTTT-AGAGCCCA--CAAGTCAGTGG
1 CAC-CCTTTTCAAAGCCCACGCAAGCCAGTAA
* **
5665114 CACCC-TTTCAAAGCCCA--CAAGTCAGTGG
1 CACCCTTTTCAAAGCCCACGCAAGCCAGTAA
* **
5665142 CACCC-TTTCAAAGCCCACGCAAGTCAGTGG
1 CACCCTTTTCAAAGCCCACGCAAGCCAGTAA
5665172 CACCCTTTTC-AAGCCCACGCAAGCCAGTAA
1 CACCCTTTTCAAAGCCCACGCAAGCCAGTAA
**
5665202 CATTCTTTTCAAAGCCCAC
1 CACCCTTTTCAAAGCCCAC
5665221 ACGTGTCAGT
Statistics
Matches: 122, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
27 3 0.02
28 37 0.30
29 14 0.11
30 44 0.36
31 21 0.17
32 3 0.02
ACGTcount: A:0.28, C:0.36, G:0.16, T:0.20
Consensus pattern (31 bp):
CACCCTTTTCAAAGCCCACGCAAGCCAGTAA
Found at i:5665860 original size:20 final size:20
Alignment explanation
Indices: 5665832--5665906 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
5665822 TTTTACCCAG
5665832 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
5665852 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
5665872 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
5665892 ATGTATCGATACATT
1 ATGTATCGATACATT
5665907 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:5665892 original size:40 final size:39
Alignment explanation
Indices: 5665832--5665909 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
5665822 TTTTACCCAG
*
5665832 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTTCAATATATCGATACAT-TATGA
* *
5665872 ATGTATCGATATATTCTTCAATGTATCGATACATTATG
1 ATGTATCGATACATTCTTCAATATATCGATACATTATG
5665910 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTCTTCAATATATCGATACATTATGA
Found at i:5673805 original size:19 final size:19
Alignment explanation
Indices: 5673781--5673833 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
5673771 ATTTTTTAAA
5673781 ATTAATAAATGATAATATT
1 ATTAATAAATGATAATATT
* *
5673800 ATTAATAGAGGATAATATT
1 ATTAATAAATGATAATATT
5673819 ATT-ATAAAT-ATAATA
1 ATTAATAAATGATAATA
5673834 ATAGTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 6 0.20
18 4 0.13
19 20 0.67
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.40
Consensus pattern (19 bp):
ATTAATAAATGATAATATT
Found at i:5673945 original size:13 final size:14
Alignment explanation
Indices: 5673915--5673947 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
5673905 GTGTAATTAC
*
5673915 TTTAAAATATTTAA
1 TTTAAAATATTCAA
5673929 TTTAAAAT-TTCAA
1 TTTAAAATATTCAA
5673942 TTTAAA
1 TTTAAA
5673948 TTGTAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAAATATTCAA
Found at i:5674189 original size:31 final size:31
Alignment explanation
Indices: 5674128--5674190 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
5674118 AAACTAAAAT
*
5674128 TTTAAAATAATTAAATAATTACAACTCTTAA
1 TTTAAAATAATTAAATAATTACAACCCTTAA
*
5674159 TTTAAAATAATTAGATAATT-CTAACCCTTAA
1 TTTAAAATAATTAAATAATTAC-AACCCTTAA
5674190 T
1 T
5674191 CATTAGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.40
Consensus pattern (31 bp):
TTTAAAATAATTAAATAATTACAACCCTTAA
Found at i:5674275 original size:37 final size:38
Alignment explanation
Indices: 5674205--5674276 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
5674195 AGACAATTAC
* * **
5674205 AATTTAAATTTTAAAATAATTAAACTATTACAACTCTT
1 AATTTAAATTTAAAAATAATTAAACAAACACAACTCTT
*
5674243 AATTTGAATTTAAAAATAA-TAAACAAACACAACT
1 AATTTAAATTTAAAAATAATTAAACAAACACAACT
5674277 TAAATTTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 12 0.41
38 17 0.59
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (38 bp):
AATTTAAATTTAAAAATAATTAAACAAACACAACTCTT
Found at i:5674305 original size:7 final size:8
Alignment explanation
Indices: 5674278--5674303 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
5674268 AACACAACTT
5674278 AAATTTTA
1 AAATTTTA
5674286 AAATTTTA
1 AAATTTTA
5674294 AAATTTTA
1 AAATTTTA
5674302 AA
1 AA
5674304 TTAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
AAATTTTA
Found at i:5677536 original size:27 final size:26
Alignment explanation
Indices: 5677483--5677538 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
5677473 TATTCATATT
* *
5677483 TTAATAAATTATTTTAAGTATTTATA
1 TTAATAAAATATTTTAAGTATTAATA
5677509 TTAATAATAATATTTTAA-TATTAAATA
1 TTAATAA-AATATTTTAAGTATT-AATA
5677536 TTA
1 TTA
5677539 TTATTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
TTAATAAAATATTTTAAGTATTAATA
Found at i:5677543 original size:21 final size:21
Alignment explanation
Indices: 5677506--5677552 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
5677496 TTAAGTATTT
**
5677506 ATATT-AATAATAATATTTTA
1 ATATTAAATAATAATATTAAA
* *
5677526 ATATTAAATATTATTATTAAA
1 ATATTAAATAATAATATTAAA
5677547 ATATTA
1 ATATTA
5677553 CTATTTCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATTAAATAATAATATTAAA
Found at i:5677552 original size:14 final size:13
Alignment explanation
Indices: 5677527--5677569 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 13
5677517 AATATTTTAA
5677527 TATTAAATATTAT
1 TATTAAATATTAT
*
5677540 TATTAAAATATTAC
1 TATT-AAATATTAT
5677554 TATTTCAAATATTAT
1 TA-TT-AAATATTAT
5677569 T
1 T
5677570 GTTATTGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 4 0.16
14 10 0.40
15 11 0.44
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (13 bp):
TATTAAATATTAT
Found at i:5677686 original size:72 final size:72
Alignment explanation
Indices: 5677490--5677691 Score: 173
Period size: 72 Copynumber: 2.7 Consensus size: 72
5677480 ATTTTAATAA
5677490 ATTATTTTAAGTATTT-ATATTAATAATAATATTTTAATATTAAATATTATTATTAAAATATTAC
1 ATTATTTTAAGTATTTAATATTAATAATAATATTTTAATATTAAATA-TA--ATT--AATATTAC
** *
5677554 TATTTCAAATATT
61 -ATAACAAATACT
* * * * *
5677567 ATTGTTATT--GT-TTGAAGAATCTAAAAATAATATTTTAACTGTT-AATATAATTAATACTTA-
1 ATTATT-TTAAGTATTTAA-TAT-TAATAATAATATTTTAA-TATTAAATATAATTAATA-TTAC
5677627 ATAACAAATACT
61 ATAACAAATACT
* *
5677639 ATTATTTTAAGTATTTAATATTAATAATAATATTTTAGTATTAAATATTATTA
1 ATTATTTTAAGTATTTAATATTAATAATAATATTTTAATATTAAATATAATTA
5677692 TTAAAACATG
Statistics
Matches: 100, Mismatches: 15, Indels: 25
0.71 0.11 0.18
Matches are distributed among these distances:
71 5 0.05
72 38 0.38
73 8 0.08
74 7 0.07
75 5 0.05
76 3 0.03
77 9 0.09
78 22 0.22
79 3 0.03
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (72 bp):
ATTATTTTAAGTATTTAATATTAATAATAATATTTTAATATTAAATATAATTAATATTACATAAC
AAATACT
Found at i:5677767 original size:24 final size:24
Alignment explanation
Indices: 5677711--5677775 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
5677701 GAATTTTTGA
*
5677711 AATATTAACATTATATTTAATATTTT
1 AATAATAACATT-T-TTTAATATTTT
*
5677737 AATAATAACATTTTTTTATA-TTT
1 AATAATAACATTTTTTAATATTTT
*
5677760 AATAAATAATATTTTT
1 AAT-AATAACATTTTT
5677776 GTCAATAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.17
24 17 0.49
25 1 0.03
26 11 0.31
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (24 bp):
AATAATAACATTTTTTAATATTTT
Found at i:5678287 original size:103 final size:103
Alignment explanation
Indices: 5678161--5678352 Score: 305
Period size: 103 Copynumber: 1.9 Consensus size: 103
5678151 TTATTAAATT
* * * * *
5678161 AAAACTAAATTTGAAAATTAAAATGGATGGATAAATAAATTTTAATGAAAATGTTAATAATACGT
1 AAAACTAAATTTGAAAATTAAAATAGATCGATAAATAAATTTCAATGAAAATATTAATAATACAT
5678226 TAAAAAATTAATTAAAAATTAAATATATTAAAATTTTA
66 TAAAAAATTAATTAAAAATTAAATATATTAAAATTTTA
* *
5678264 AAAATTAAATTT-ATAAATTAAAATAGATCGATAAATAAATTTCACTGAAAATATTAATAATACA
1 AAAACTAAATTTGA-AAATTAAAATAGATCGATAAATAAATTTCAATGAAAATATTAATAATACA
5678328 TTAAAAAATTAATTAAAAATTAAAT
65 TTAAAAAATTAATTAAAAATTAAAT
5678353 TTAAAAATTA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
102 1 0.01
103 80 0.99
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (103 bp):
AAAACTAAATTTGAAAATTAAAATAGATCGATAAATAAATTTCAATGAAAATATTAATAATACAT
TAAAAAATTAATTAAAAATTAAATATATTAAAATTTTA
Found at i:5678352 original size:79 final size:77
Alignment explanation
Indices: 5678261--5678429 Score: 275
Period size: 79 Copynumber: 2.2 Consensus size: 77
5678251 TATTAAAATT
* * *
5678261 TTAAAAATTAAATTTATAAATTAAAATAGATCGATAAATAAATTTCACTGAAAATATTAATAATA
1 TTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTCAATGAAAATATTAATAATA
5678326 CATTAAAAAATTAA
66 CA-T-AAAAATTAA
*
5678340 TTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATGAAAATATTAATAATA
1 TTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTCAATGAAAATATTAATAATA
*
5678405 TATAAAAATTAA
66 CATAAAAATTAA
5678417 TTAAAAATTAAAT
1 TTAAAAATTAAAT
5678430 ATATTAAAAT
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
77 22 0.26
78 1 0.01
79 62 0.73
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (77 bp):
TTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTCAATGAAAATATTAATAATA
CATAAAAATTAA
Found at i:5678356 original size:13 final size:12
Alignment explanation
Indices: 5678331--5678364 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
5678321 TAATACATTA
5678331 AAAAATT-AATT
1 AAAAATTAAATT
5678342 AAAAATTAAATTT
1 AAAAATTAAA-TT
5678355 AAAAATTAAA
1 AAAAATTAAA
5678365 ATAGATAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 2 0.10
13 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAATTAAATT
Found at i:5678417 original size:29 final size:26
Alignment explanation
Indices: 5678331--5678464 Score: 88
Period size: 24 Copynumber: 5.3 Consensus size: 26
5678321 TAATACATTA
*
5678331 AAAAATTAATTAAAAATTAAAT-T-T
1 AAAAATTAATGAAAAATTAAATATAT
* * *
5678355 AAAAATTAA--AATAGA-TAGATAAAT
1 AAAAATTAATGAA-AAATTAAATATAT
**
5678379 AAATTTTAATGAAAATATTAATAATATAT
1 AAAAATTAATGAAAA-ATT-A-AATATAT
*
5678408 AAAAATTAATTAAAAATTAAATATAT
1 AAAAATTAATGAAAAATTAAATATAT
* *
5678434 TAAAATT--TCAAAAATTAAAT-T-T
1 AAAAATTAATGAAAAATTAAATATAT
5678456 AAAAATTAA
1 AAAAATTAA
5678465 AATGGATGGA
Statistics
Matches: 85, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
22 13 0.15
23 3 0.04
24 29 0.34
25 1 0.01
26 16 0.19
27 2 0.02
28 4 0.05
29 17 0.20
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (26 bp):
AAAAATTAATGAAAAATTAAATATAT
Found at i:5678425 original size:7 final size:7
Alignment explanation
Indices: 5678415--5678466 Score: 52
Period size: 7 Copynumber: 7.1 Consensus size: 7
5678405 TATAAAAATT
5678415 AATTAAA
1 AATTAAA
5678422 AATTAAA
1 AATTAAA
5678429 TATATTAAA
1 -A-ATTAAA
*
5678438 ATTTCAAA
1 AATT-AAA
5678446 AATT-AA
1 AATTAAA
*
5678452 ATTTAAA
1 AATTAAA
5678459 AATTAAA
1 AATTAAA
5678466 A
1 A
5678467 TGGATGGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 5 0.14
7 18 0.49
8 8 0.22
9 6 0.16
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (7 bp):
AATTAAA
Found at i:5678438 original size:26 final size:24
Alignment explanation
Indices: 5678401--5678462 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 24
5678391 AAATATTAAT
*
5678401 AATATATAAAAATTAATTAAAAATTA
1 AATATATAAAAATT--TCAAAAATTA
*
5678427 AATATATTAAAATTTCAAAAATTA
1 AATATATAAAAATTTCAAAAATTA
5678451 AAT-T-TAAAAATT
1 AATATATAAAAATT
5678463 AAAATGGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 7 0.21
23 1 0.03
24 12 0.36
26 13 0.39
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AATATATAAAAATTTCAAAAATTA
Found at i:5678439 original size:79 final size:78
Alignment explanation
Indices: 5678247--5678440 Score: 263
Period size: 79 Copynumber: 2.5 Consensus size: 78
5678237 TTAAAAATTA
* *
5678247 AATATATTAAAATT--TTAAAAATTAAA-T-TTATAAATTAAAATAGATCGATAAATAAATTTCA
1 AATATATAAAAATTAATTAAAAATTAAATTATTA-AAATTAAAATAGATAGATAAATAAATTTCA
*
5678308 CTGAAAATATTAAT
65 ATGAAAATATTAAT
* * *
5678322 AATACATTAAAAAATTAATTAAAAATTAAATT-TAAAAATTAAAATAGATAGATAAATAAATTTT
1 AATATA-T-AAAAATTAATTAAAAATTAAATTATTAAAATTAAAATAGATAGATAAATAAATTTC
5678386 AATGAAAATATTAAT
64 AATGAAAATATTAAT
5678401 AATATATAAAAATTAATTAAAAATTAAATATATTAAAATT
1 AATATATAAAAATTAATTAAAAATTAAAT-TATTAAAATT
5678441 TCAAAAATTA
Statistics
Matches: 104, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
75 5 0.05
76 1 0.01
77 28 0.27
78 2 0.02
79 65 0.62
80 3 0.03
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (78 bp):
AATATATAAAAATTAATTAAAAATTAAATTATTAAAATTAAAATAGATAGATAAATAAATTTCAA
TGAAAATATTAAT
Found at i:5678455 original size:101 final size:103
Alignment explanation
Indices: 5678342--5678554 Score: 342
Period size: 101 Copynumber: 2.1 Consensus size: 103
5678332 AAAATTAATT
*
5678342 AAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATGAAAATATTAATAATA-T
1 AAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATAAAAATATTAATAATACT
* *
5678406 ATAAAAATTAATTAAAAATTAAATATATTAA-AATTTC
66 AAAAAAATTAATTAAAAATTAAATATATCAAGAATTTC
* * *
5678443 AAAAATTAAATTTAAAAATTAAAATGGATGGATAAATAAATTTTAATAAAAATATTAATCATACG
1 AAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATAAAAATATTAATAATAC-
5678508 TAAAAAAATTAATTAAAAATTAAATATATCAAGAATTTC
65 TAAAAAAATTAATTAAAAATTAAATATATCAAGAATTTC
5678547 -AAAATTAA
1 AAAAATTAA
5678555 TTTTTTATTT
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
101 59 0.57
103 38 0.37
104 6 0.06
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (103 bp):
AAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATAAAAATATTAATAATACT
AAAAAAATTAATTAAAAATTAAATATATCAAGAATTTC
Found at i:5678461 original size:13 final size:14
Alignment explanation
Indices: 5678436--5678465 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
5678426 AAATATATTA
5678436 AAATTTCAAAAATT
1 AAATTTCAAAAATT
5678450 AAATTT-AAAAATT
1 AAATTTCAAAAATT
5678463 AAA
1 AAA
5678466 ATGGATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATTTCAAAAATT
Found at i:5678479 original size:180 final size:181
Alignment explanation
Indices: 5678157--5678532 Score: 578
Period size: 180 Copynumber: 2.1 Consensus size: 181
5678147 AAATTTATTA
* * * * *
5678157 AATT-AAAACTAAATTTGAAAATTAAAATGGATGGATAAATAAATTTTAATGAAAATGTTAATAA
1 AATTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATGAAAATATTAATAA
* *
5678221 TACGTTAAAAAATTAATTAAAAATTAAATATATTAAAATTTTAAAAATTAAATTTATAAATTAAA
66 TAC-TTAAAAAATTAATTAAAAATTAAATATATTAAAATTTCAAAAATTAAATTTAAAAATTAAA
* * *
5678286 ATAGATCGATAAATAAATTTCACTGAAAATATTAATAATACATTAAAAAATT
130 ATAGATCGATAAATAAATTTCAATAAAAATATTAATAATACATAAAAAAATT
5678338 AATTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATGAAAATATTAATAA
1 AATTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATGAAAATATTAATAA
5678403 TA--TATAAAAATTAATTAAAAATTAAATATATTAAAATTTCAAAAATTAAATTTAAAAATTAAA
66 TACTTA-AAAAATTAATTAAAAATTAAATATATTAAAATTTCAAAAATTAAATTTAAAAATTAAA
* * * * *
5678466 ATGGATGGATAAATAAATTTTAATAAAAATATTAATCATACGTAAAAAAATT
130 ATAGATCGATAAATAAATTTCAATAAAAATATTAATAATACATAAAAAAATT
5678518 AATTAAAAATTAAAT
1 AATTAAAAATTAAAT
5678533 ATATCAAGAA
Statistics
Matches: 178, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
179 2 0.01
180 115 0.65
181 4 0.02
182 57 0.32
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (181 bp):
AATTAAAAATTAAATTTAAAAATTAAAATAGATAGATAAATAAATTTTAATGAAAATATTAATAA
TACTTAAAAAATTAATTAAAAATTAAATATATTAAAATTTCAAAAATTAAATTTAAAAATTAAAA
TAGATCGATAAATAAATTTCAATAAAAATATTAATAATACATAAAAAAATT
Found at i:5688707 original size:32 final size:32
Alignment explanation
Indices: 5688669--5688736 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
5688659 TTGTCAGTTT
*
5688669 AAAATTGCTGATCAACATAGGATAATAATTTA
1 AAAATTGCTCATCAACATAGGATAATAATTTA
* * * *
5688701 AAAATTGCTCTTTAACATAGTATAATAGTTTA
1 AAAATTGCTCATCAACATAGGATAATAATTTA
5688733 AAAA
1 AAAA
5688737 AGAAGCTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.47, C:0.09, G:0.10, T:0.34
Consensus pattern (32 bp):
AAAATTGCTCATCAACATAGGATAATAATTTA
Found at i:5690264 original size:3 final size:3
Alignment explanation
Indices: 5690251--5690281 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
5690241 AAAGAAACCA
*
5690251 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
5690282 ATTATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:5692054 original size:24 final size:26
Alignment explanation
Indices: 5692027--5692090 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
5692017 ATTATTTCTG
5692027 AAAATAAGC-AAA-ATACTAACTAAT
1 AAAATAAGCTAAATATACTAACTAAT
* *
5692051 AAAATACGCTAAATGTACTAACTAAT
1 AAAATAAGCTAAATATACTAACTAAT
*
5692077 AAAATATGCTAAAT
1 AAAATAAGCTAAAT
5692091 GAGCTTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 8 0.23
25 3 0.09
26 24 0.69
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.25
Consensus pattern (26 bp):
AAAATAAGCTAAATATACTAACTAAT
Found at i:5692075 original size:26 final size:26
Alignment explanation
Indices: 5692040--5692091 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5692030 ATAAGCAAAA
5692040 TACTAACTAATAAAATACGCTAAATG
1 TACTAACTAATAAAATACGCTAAATG
*
5692066 TACTAACTAATAAAATATGCTAAATG
1 TACTAACTAATAAAATACGCTAAATG
5692092 AGCTTAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (26 bp):
TACTAACTAATAAAATACGCTAAATG
Found at i:5700988 original size:31 final size:31
Alignment explanation
Indices: 5700953--5701015 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
5700943 TCATTGATTG
* *
5700953 CGGTGATTGTGAAGATATGGA-TATTGGGTTT
1 CGGTGATTGGGAAGATAT-AATTATTGGGTTT
5700984 CGGTGATTGGGAAGATATAATTATTGGGTTT
1 CGGTGATTGGGAAGATATAATTATTGGGTTT
5701015 C
1 C
5701016 CTTTGATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.24, C:0.05, G:0.33, T:0.38
Consensus pattern (31 bp):
CGGTGATTGGGAAGATATAATTATTGGGTTT
Found at i:5704141 original size:45 final size:45
Alignment explanation
Indices: 5704077--5704167 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
5704067 TTATAGGCAA
5704077 ATGCTTTTTATGACATTGACAAGTTGATTTAAGATAAAATCAACT
1 ATGCTTTTTATGACATTGACAAGTTGATTTAAGATAAAATCAACT
5704122 ATGCTTTTTATGACATTGACAAGTTGATTTAAGATAAAATCAACT
1 ATGCTTTTTATGACATTGACAAGTTGATTTAAGATAAAATCAACT
5704167 A
1 A
5704168 AGGCATTTGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (45 bp):
ATGCTTTTTATGACATTGACAAGTTGATTTAAGATAAAATCAACT
Found at i:5708847 original size:10 final size:10
Alignment explanation
Indices: 5708832--5708859 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
5708822 AAAGTCGCCT
5708832 CGTCTCGTCC
1 CGTCTCGTCC
5708842 CGTCTCGTCC
1 CGTCTCGTCC
5708852 CGTCTCGT
1 CGTCTCGT
5708860 GGCCTTTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.46, G:0.21, T:0.32
Consensus pattern (10 bp):
CGTCTCGTCC
Found at i:5710704 original size:2 final size:2
Alignment explanation
Indices: 5710697--5710732 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
5710687 TTCTGCACTA
5710697 TG TG TG TG TG TG TG TG TG TG TG TG -G T- TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
5710733 GTGCACTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:5710733 original size:12 final size:13
Alignment explanation
Indices: 5710697--5710735 Score: 64
Period size: 12 Copynumber: 3.2 Consensus size: 13
5710687 TTCTGCACTA
5710697 TGTGTGTGTGT-G
1 TGTGTGTGTGTGG
5710709 TGTGTGTGTGTGG
1 TGTGTGTGTGTGG
5710722 T-TGTGTGTGTGG
1 TGTGTGTGTGTGG
5710734 TG
1 TG
5710736 CACTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 23 0.92
13 2 0.08
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (13 bp):
TGTGTGTGTGTGG
Found at i:5711203 original size:22 final size:22
Alignment explanation
Indices: 5711178--5711219 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
5711168 ACGGGCCATA
5711178 TTTGTAAAGTAATGAATGAATT
1 TTTGTAAAGTAATGAATGAATT
5711200 TTTGTAAAGTAATGAATGAA
1 TTTGTAAAGTAATGAATGAA
5711220 CTGCCTCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (22 bp):
TTTGTAAAGTAATGAATGAATT
Found at i:5711292 original size:2 final size:2
Alignment explanation
Indices: 5711285--5711336 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
5711275 GAAAGGAGTA
5711285 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5711327 AT AT AT AT AT
1 AT AT AT AT AT
5711337 GACCTAATCC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5712418 original size:24 final size:21
Alignment explanation
Indices: 5712380--5712427 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 21
5712370 TAGAGACAGA
5712380 AAAATTCAATATTCAATATCTC
1 AAAATTCAATATTCAATATC-C
*
5712402 AAAATCTCAAATATTCATTATCC
1 AAAAT-TC-AATATTCAATATCC
5712425 AAA
1 AAA
5712428 GCCTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 6 0.26
24 12 0.52
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAATTCAATATTCAATATCC
Found at i:5718140 original size:20 final size:21
Alignment explanation
Indices: 5718117--5718163 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
5718107 AATATTTTTA
*
5718117 AAATGATT-TTAATATTAAAT
1 AAATGATTATTAATAATAAAT
*
5718137 AAAT-ATTATTTATAATAAAT
1 AAATGATTATTAATAATAAAT
*
5718157 AATTGAT
1 AAATGAT
5718164 AAAAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 3 0.14
20 17 0.77
21 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (21 bp):
AAATGATTATTAATAATAAAT
Found at i:5719207 original size:18 final size:18
Alignment explanation
Indices: 5719186--5719221 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
5719176 ATAATACAAT
*
5719186 CTAGGCTAATAAGATAAA
1 CTAGACTAATAAGATAAA
*
5719204 CTAGATTAATAAGATAAA
1 CTAGACTAATAAGATAAA
5719222 TATATAAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.25
Consensus pattern (18 bp):
CTAGACTAATAAGATAAA
Found at i:5719228 original size:13 final size:13
Alignment explanation
Indices: 5719212--5719236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5719202 AACTAGATTA
5719212 ATAAGATAAATAT
1 ATAAGATAAATAT
5719225 ATAAGATAAATA
1 ATAAGATAAATA
5719237 CATATTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
ATAAGATAAATAT
Found at i:5719323 original size:47 final size:45
Alignment explanation
Indices: 5719221--5719329 Score: 112
Period size: 47 Copynumber: 2.3 Consensus size: 45
5719211 AATAAGATAA
* * *
5719221 ATATATAAGATAAATACATATTTTGATAATTTAACCAATTTGAGAG
1 ATATAAAAG-TAAATACATATTATGATAATCTAACCAATTTGAGAG
* **
5719267 ATAATTAAAAGTAAATACATATTATGATAATCTAGCCTGTTTGAGATG
1 AT-A-TAAAAGTAAATACATATTATGATAATCTAACCAATTTGAGA-G
5719315 TATATAAAA-TAAATA
1 -ATATAAAAGTAAATA
5719330 TAAGACAATG
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
46 8 0.15
47 36 0.68
48 7 0.13
49 2 0.04
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (45 bp):
ATATAAAAGTAAATACATATTATGATAATCTAACCAATTTGAGAG
Found at i:5720193 original size:23 final size:22
Alignment explanation
Indices: 5720150--5720193 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
5720140 AGTTTCGTAT
***
5720150 AAATGTTTTTAAGTCTTAAATC
1 AAATGTTTTTAAGTAGAAAATC
5720172 AAATGTTTTTAAGTAAGAAAAT
1 AAATGTTTTTAAGT-AGAAAAT
5720194 TCCAAAGTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (22 bp):
AAATGTTTTTAAGTAGAAAATC
Found at i:5720327 original size:19 final size:19
Alignment explanation
Indices: 5720300--5720355 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
5720290 TGTATCGATC
* *
5720300 CATTATATCGATACATGTT
1 CATTGTATCGATACATGCT
* *
5720319 CATTGTATCGATACGTACT
1 CATTGTATCGATACATGCT
5720338 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
5720356 AAACTGGCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:5722058 original size:9 final size:9
Alignment explanation
Indices: 5722046--5722070 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
5722036 GATGAAGATG
5722046 ATGATGATA
1 ATGATGATA
5722055 ATGATGATA
1 ATGATGATA
5722064 ATGATGA
1 ATGATGA
5722071 GGTTGACTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (9 bp):
ATGATGATA
Found at i:5726658 original size:33 final size:33
Alignment explanation
Indices: 5726609--5726687 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
5726599 AAAAACCCAG
* *
5726609 ATGTATCGATATAATGTTCTTTGTATCGATACA
1 ATGTATCGATACAATGTTCTTTGCATCGATACA
* * *
5726642 TTGTATTGATACAATGTTCTTTGCATCGATATA
1 ATGTATCGATACAATGTTCTTTGCATCGATACA
5726675 ATGTATCGATACA
1 ATGTATCGATACA
5726688 TGGGTTACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (33 bp):
ATGTATCGATACAATGTTCTTTGCATCGATACA
Found at i:5730013 original size:79 final size:78
Alignment explanation
Indices: 5729841--5730361 Score: 530
Period size: 79 Copynumber: 6.6 Consensus size: 78
5729831 GGAACTCGGG
* *
5729841 TTTTA-TTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAACACCG-T-TTTTCTGAGGG
1 TTTTATTTTC-AAAACACCAATTTTTCACAATCGGGGATACTCCAAC-CCGTTATTTTC-GAGGG
* **
5729903 GATGCTTTAACCCC-A
63 GATACTCAAACCCCGA
* * * * ** * *
5729918 CTTTTATTTTCGAAACATCGATTTTCCACAATCGACGATACTCCAATCTCGTTATTTTCAAGGGG
1 -TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGG
5729983 ATACTCAAACCCCGA
64 ATACTCAAACCCCGA
* * * ***
5729998 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACTCCGTTATTTTTGAAAAGA
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC-CCGTTATTTTCGAGGGGA
* *
5730063 TGCTCCAACCCCGA
65 TACTCAAACCCCGA
* * * * *
5730077 TTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCTAACCCTGTTATTTTTGAGGGGA
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGA
* * *
5730142 TACTCTAACCCTGG
65 TACTCAAACCCCGA
* *** * * *
5730156 TTTTATTTTCAAAATATTGATTTTTCACAATCGGGGATACTTCAATCGCGTTATTTTTGAGGGGA
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGA
*
5730221 TACTCCAACCCCGA
65 TACTCAAACCCCGA
* *
5730235 TTTTATTTTCAAAACACTAATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGA
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGA
*
5730300 TAC-CACAATCCCGA
65 TACTCA-AACCCCGA
* * *
5730314 TTTTATTTTCAAAACACCAATTTTCCACCATTGGGGATACTCCAACCC
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
5730362 CGATTTTATT
Statistics
Matches: 372, Mismatches: 61, Indels: 19
0.82 0.13 0.04
Matches are distributed among these distances:
78 42 0.11
79 322 0.87
80 8 0.02
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (78 bp):
TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCGTTATTTTCGAGGGGAT
ACTCAAACCCCGA
Found at i:5730130 original size:158 final size:158
Alignment explanation
Indices: 5729841--5730359 Score: 618
Period size: 158 Copynumber: 3.3 Consensus size: 158
5729831 GGAACTCGGG
* * * * *
5729841 TTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAACACCGTT-TTTCTGAGGGGA
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACTCCGTTATTTTTGAGGGGA
** * * ** *
5729905 TGCTTTAACCCC-ACTTTTATTTTCGAAACATCGATTTTCCACAATCGACGATACTCCAA-TCTC
66 TGCTCCAACCCCGA-TTTTATTTTCAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCT-
*
5729968 GTTATTTTCAAGGGGATACTCAAACCCCGA
129 GTTATTTTCGAGGGGATACTCAAACCCCGA
* ***
5729998 TTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACTCCGTTATTTTTGAAAAGA
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACTCCGTTATTTTTGAGGGGA
* *
5730063 TGCTCCAACCCCGATTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCTAACCCTGT
66 TGCTCCAACCCCGATTTTATTTTCAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGT
* * * *
5730128 TATTTTTGAGGGGATACTCTAACCCTGG
131 TATTTTCGAGGGGATACTCAAACCCCGA
* * *** *
5730156 TTTTATTTTCAAAATATTGATTTTTCACAATCGGGGATACTTCAA-TCGCGTTATTTTTGAGGGG
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACTC-CGTTATTTTTGAGGGG
* * *
5730220 ATACTCCAACCCCGATTTTATTTTCAAAACA-CTAATTTTTCATAATCGGGGATACTCCAACCCT
65 ATGCTCCAACCCCGATTTTATTTTCAAAACATC-GATTTTTCACAATCGGGGATACTCCAACCCT
*
5730284 GTTATTTTCGAGGGGATAC-CACAATCCCGA
129 GTTATTTTCGAGGGGATACTCA-AACCCCGA
* * * *
5730314 TTTTATTTTCAAAACACCAATTTTCCACCATTGGGGATACTCCAAC
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
5730360 CCCGATTTTA
Statistics
Matches: 306, Mismatches: 49, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
157 53 0.17
158 250 0.82
159 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (158 bp):
TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACTCCGTTATTTTTGAGGGGA
TGCTCCAACCCCGATTTTATTTTCAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGT
TATTTTCGAGGGGATACTCAAACCCCGA
Found at i:5730259 original size:237 final size:235
Alignment explanation
Indices: 5729841--5730361 Score: 668
Period size: 237 Copynumber: 2.2 Consensus size: 235
5729831 GGAACTCGGG
* * *
5729841 TTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAACACCGTTTTTCTGAGGGGAT
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC-CCGTTTTTCTGAGGGGAT
* * * *
5729906 GCTTTAACCCCACTTTTATTTTCGAAACATCGATTTTCCACAATCGACGATACTCCAATCTCGTT
65 ACTCTAACCCCACTTTTATTTTCAAAACATCGATTTTCCACAATCGACGATACTCCAATCGCGTT
5729971 ATTTTCAAGGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGAT
130 ATTTTCAAGGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGAT
* *
5730036 ACTCCAACTCC-GTTATTTTTGAAAAGATGCTC-CAACCCCGA
195 ACTCCAAC-CCTGTTATTTTCGAAAAGATAC-CACAACCCCGA
* * * *
5730077 TTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCTAACCCTGTTATTTTTGAGGGGA
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC-GTT-TTTCTGAGGGGA
*** * * * ** *
5730142 TACTCTAACCCTGGTTTTATTTTCAAAATATTGATTTTTCACAATCGGGGATACTTCAATCGCGT
64 TACTCTAACCCCACTTTTATTTTCAAAACATCGATTTTCCACAATCGACGATACTCCAATCGCGT
** * * *
5730207 TATTTTTGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTTCATAATCGGGGA
129 TATTTTCAAGGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGA
*** *
5730272 TACTCCAACCCTGTTATTTTCGAGGGGATACCACAATCCCGA
194 TACTCCAACCCTGTTATTTTCGAAAAGATACCACAACCCCGA
* * * *
5730314 TTTTATTTTCAAAACACCAATTTTCCACCATTGGGGATACTCCAACCC
1 TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
5730362 CGATTTTATT
Statistics
Matches: 243, Mismatches: 38, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
235 2 0.01
236 46 0.19
237 195 0.80
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (235 bp):
TTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCGTTTTTCTGAGGGGATA
CTCTAACCCCACTTTTATTTTCAAAACATCGATTTTCCACAATCGACGATACTCCAATCGCGTTA
TTTTCAAGGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATA
CTCCAACCCTGTTATTTTCGAAAAGATACCACAACCCCGA
Found at i:5730364 original size:51 final size:51
Alignment explanation
Indices: 5730295--5730456 Score: 209
Period size: 51 Copynumber: 3.2 Consensus size: 51
5730285 TTATTTTCGA
* * * * *
5730295 GGGGATAC-CACAATCCCGATTTTATTTTCAAAACACCAATTTTCCACCATT
1 GGGGATACTC-CAACCCCGATTTTATTTTCAGAACATCGATTTTCCACAATT
* *
5730346 GGGGATACTCCAACCCCGATTTTATTTTTAGAACATCGATTTTTCACAATT
1 GGGGATACTCCAACCCCGATTTTATTTTCAGAACATCGATTTTCCACAATT
* * * *
5730397 AGGGATACTCCAACCCTGGTTTTATTTTCAGAACATCGATTTTCCATAATT
1 GGGGATACTCCAACCCCGATTTTATTTTCAGAACATCGATTTTCCACAATT
5730448 GGGGATACT
1 GGGGATACT
5730457 ACAGCCTCGT
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
51 95 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAGAACATCGATTTTCCACAATT
Found at i:5741726 original size:22 final size:22
Alignment explanation
Indices: 5741691--5741744 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
5741681 CTTTTTTTTT
*
5741691 AAAAAA-AAATAAAACACAAAA-
1 AAAAAAGAAAAAAAACA-AAAAG
*
5741712 AAAAAAGAAAAAAAAGAAAAAG
1 AAAAAAGAAAAAAAACAAAAAG
*
5741734 AGAAAAGAAAA
1 AAAAAAGAAAA
5741745 GAACCTGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.85, C:0.04, G:0.09, T:0.02
Consensus pattern (22 bp):
AAAAAAGAAAAAAAACAAAAAG
Found at i:5741731 original size:17 final size:18
Alignment explanation
Indices: 5741693--5741747 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
5741683 TTTTTTTTAA
*
5741693 AAAAAAATAAAACACAAA-
1 AAAAAAAGAAAACA-AAAG
5741711 AAAAAAAGAAAA-AAAAG
1 AAAAAAAGAAAACAAAAG
* *
5741728 AAAAAGAGAAAAGAAAAG
1 AAAAAAAGAAAACAAAAG
5741746 AA
1 AA
5741748 CCTGCTTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 3 0.09
17 12 0.36
18 18 0.55
ACGTcount: A:0.84, C:0.04, G:0.11, T:0.02
Consensus pattern (18 bp):
AAAAAAAGAAAACAAAAG
Found at i:5742811 original size:61 final size:61
Alignment explanation
Indices: 5742711--5743041 Score: 448
Period size: 61 Copynumber: 5.4 Consensus size: 61
5742701 AAACCTTTTA
* *
5742711 ACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACCCAAGTTGGTGGC
1 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* *
5742772 ACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTATTTTAAAGCCCACACAAGTTGGTGGC
1 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* * * * *
5742833 ACCTTTCAGTCCTCAAAGAGCATGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGAC
1 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* * * * ** *
5742894 ATCTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGGCCACATGAGCTGGTGGC
1 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* * * *
5742955 ACTTTTTAGTCCTCAAAGAGCAGGACG-CTTTCTCTTTGCAAAGCCCACACAAGTTGGTAGC
1 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTT-TAAAGCCCACACAAGTTGGTGGC
* *
5743016 ACCTTCTAGTCCCCAAAGAGCAGGAC
1 ACCTTTTAGTCCTCAAAGAGCAGGAC
5743042 ACGCTTTAAT
Statistics
Matches: 234, Mismatches: 35, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
60 8 0.03
61 226 0.97
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (61 bp):
ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
Found at i:5743133 original size:42 final size:43
Alignment explanation
Indices: 5743029--5743164 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 43
5743019 TTCTAGTCCC
* * *
5743029 CAAAGAGCAGGACACGCTTTAATTTCCTTCTTTTCTTTTGT-CTT
1 CAAAGAGCAGGACAC-ATTTCATTTCCTT-TTTTCCTTTGTCCTT
* *
5743073 CAAAGAGCAGGACACATTTTATTTCCTTTTTTCCTTCGTCCTT
1 CAAAGAGCAGGACACATTTCATTTCCTTTTTTCCTTTGTCCTT
* * * *
5743116 -AAGGAGTAGGACCCATTTCA-TT-CTATTTTCCTTTGTCC-T
1 CAAAGAGCAGGACACATTTCATTTCCTTTTTTCCTTTGTCCTT
*
5743155 CGAAGAGCAG
1 CAAAGAGCAG
5743165 AACATACTCT
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
39 1 0.01
40 20 0.26
41 2 0.03
42 25 0.32
43 14 0.18
44 15 0.19
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (43 bp):
CAAAGAGCAGGACACATTTCATTTCCTTTTTTCCTTTGTCCTT
Found at i:5743178 original size:33 final size:34
Alignment explanation
Indices: 5743141--5743230 Score: 128
Period size: 33 Copynumber: 2.7 Consensus size: 34
5743131 TTTCATTCTA
*
5743141 TTTTCCTTTGTCCTCGAAGAGCAGAACATACT-C
1 TTTTCCTTTGTCCTTGAAGAGCAGAACATACTCC
* *
5743174 TTTTCCTTTGTCCTTGAAGAGCAGGACGTACTCC
1 TTTTCCTTTGTCCTTGAAGAGCAGAACATACTCC
* *
5743208 TTTTCCTTTATCCTTAAAGAGCA
1 TTTTCCTTTGTCCTTGAAGAGCA
5743231 AGACGCCCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 29 0.57
34 22 0.43
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.37
Consensus pattern (34 bp):
TTTTCCTTTGTCCTTGAAGAGCAGAACATACTCC
Found at i:5746416 original size:28 final size:29
Alignment explanation
Indices: 5746376--5746432 Score: 73
Period size: 28 Copynumber: 1.9 Consensus size: 29
5746366 CACAATCGGG
5746376 GATACTCTAACCCCG-TTATTTTCAAGGA
1 GATACTCTAACCCCGTTTATTTTCAAGGA
5746404 GATACT-TCAACCCCGATTTTATTTTCAAG
1 GATACTCT-AACCCCG--TTTATTTTCAAG
5746433 ACACCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 1 0.04
28 13 0.52
31 11 0.44
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (29 bp):
GATACTCTAACCCCGTTTATTTTCAAGGA
Found at i:5746485 original size:158 final size:157
Alignment explanation
Indices: 5746262--5746783 Score: 672
Period size: 158 Copynumber: 3.3 Consensus size: 157
5746252 CTAATCCTGG
**
5746262 TTTTATTTCTAAAACACCAAAATTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
* * *
5746327 TGCTCCAACCTCAGTTTTATTTTCAAAACATCGATTTTTCACAATCGGGGATACTCTAACCCCGT
66 TGCTCCAACCTCGGTTTTATTTTCAAAACATCGATTTTCCACAATCGGGGATACTCTAACCCAGT
* *
5746392 TATTTTCAAGGAGATACTTCAACCCCGA
131 TATTTT-GAGGGGATACTTCAACCCCGA
* * ** * *
5746420 TTTTATTT-TCAAGACACCAATTTTTCATAATCGGAGATACTTTAACCCCGTTATTTCTGAAGGG
1 TTTTATTTCT-AAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGG
*
5746484 ATGCTCCAACC-CTGGTTTTATTTTCAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCA
65 ATGCTCCAACCTC-GGTTTTATTTTCAAAACATCGATTTTCCACAATCGGGGATACTCTAACCCA
* * *
5746548 GTTATTTATGAGGGGATACTTTAACCCTGG
129 GTTATTT-TGAGGGGATACTTCAACCCCGA
* ** * *
5746578 TTTTATTTCCAAAACACTGATTTTCCGTAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
* * ** *
5746643 TACTCCAACCTCGGTTTTATTTTCAAAACA-CTAATTTTCCACAATTAGGGATACTCTAACCCTG
66 TGCTCCAACCTCGGTTTTATTTTCAAAACATC-GATTTTCCACAATCGGGGATACTCTAACCCAG
*
5746707 TTATTTTGGAGGGGATACTCCAACCCCGA
130 TTATTTT-GAGGGGATACTTCAACCCCGA
* ** * *
5746736 TTTTATTTCTAAAACACCAATTTTCCACCATTGGGGACACTCCAACCC
1 TTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
5746784 TAATTTAATT
Statistics
Matches: 311, Mismatches: 46, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
157 4 0.01
158 305 0.98
159 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (157 bp):
TTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
TGCTCCAACCTCGGTTTTATTTTCAAAACATCGATTTTCCACAATCGGGGATACTCTAACCCAGT
TATTTTGAGGGGATACTTCAACCCCGA
Found at i:5746784 original size:79 final size:79
Alignment explanation
Indices: 5746237--5746783 Score: 573
Period size: 79 Copynumber: 6.9 Consensus size: 79
5746227 ATGTTTTTAC
* * * * *
5746237 TTTCGAGGGGATACTCTAATCCTGGTTTTA-TTTCTAAAACACCAAAATTT-CATAATCGGGGAT
1 TTTCGAGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACC-AATTTTCCACAATCGGGGAT
5746300 ACTCCAACCCCGTTAT
64 ACTCCAACCCCGTTAT
* * * * * * *
5746316 TTCCGAGGGGATGCTCCAACCTCAGTTTTATTTTCAAAACATCGATTTTTCACAATCGGGGATAC
1 TTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATAC
*
5746381 TCTAACCCCGTTAT
66 TCCAACCCCGTTAT
* * * * * * * *
5746395 TTTCAAGGAGATACTTCAACCCCGATTTTATTTTCAAGACACCAATTTTTCATAATCGGAGATAC
1 TTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATAC
**
5746460 TTTAACCCCGTTA-
66 TCCAACCCCGTTAT
* * * * *
5746473 TTTCTGAAGGGATGCTCCAACCCTGGTTTTATTTTCAAAACATCGATTTTCCACAATCGGGGATA
1 TTTC-GAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATA
*
5746538 CTCCAACCCAGTTAT
65 CTCCAACCCCGTTAT
** * * ** **
5746553 TTAT-GAGGGGATACTTTAACCCTGGTTTTATTTCCAAAACACTGATTTTCCGTAATCGGGGATA
1 TT-TCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATA
5746617 CTCCAACCCCGTTAT
65 CTCCAACCCCGTTAT
* * * **
5746632 TTCCGAGGGGATACTCCAACCTCGGTTTTATTTTCAAAACACTAATTTTCCACAATTAGGGATAC
1 TTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATAC
* *
5746697 TCTAACCCTGTTAT
66 TCCAACCCCGTTAT
* * * * *
5746711 TTTGGAGGGGATACTCCAACCCCGATTTTA-TTTCTAAAACACCAATTTTCCACCATTGGGGACA
1 TTTCGAGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTCCACAATCGGGGATA
5746775 CTCCAACCC
65 CTCCAACCC
5746784 TAATTTAATT
Statistics
Matches: 387, Mismatches: 74, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
78 12 0.03
79 368 0.95
80 6 0.02
81 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (79 bp):
TTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATAC
TCCAACCCCGTTAT
Found at i:5746940 original size:79 final size:79
Alignment explanation
Indices: 5746768--5746941 Score: 194
Period size: 79 Copynumber: 2.2 Consensus size: 79
5746758 TTCCACCATT
* *
5746768 GGGGACACTCCAACCCTAATTTAATTTCCAGAACATTGATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCTAATTTAATTTCCAGAACATTGATTTTCCACAATCGGGGATACTCCAAC
*
5746833 CCCGTTATTTTCGA
66 CCCGTTATTTTCAA
* * * * * *
5746847 GGGGATATTTCAA-CCTCAATTTTATTTTCAGAAC-TTCGATTTTCCATAATCGGGGATAC-CTT
1 GGGGATACTCCAACCCT-AATTTAATTTCCAGAACATT-GATTTTCCACAATCGGGGATACTC-C
*
5746909 AGCCCCGTTA-TTTCTAA
63 AACCCCGTTATTTTC-AA
5746926 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
5746942 CATCTTTATC
Statistics
Matches: 78, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
78 10 0.13
79 66 0.85
80 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCTAATTTAATTTCCAGAACATTGATTTTCCACAATCGGGGATACTCCAAC
CCCGTTATTTTCAA
Found at i:5750688 original size:7 final size:7
Alignment explanation
Indices: 5750673--5750705 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
5750663 AGATATACTA
*
5750673 CAAAATC
1 CAAACTC
5750680 CAAACTC
1 CAAACTC
5750687 CAAACTC
1 CAAACTC
5750694 CAAACTC
1 CAAACTC
5750701 CAAAC
1 CAAAC
5750706 CAAAAGCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.12
Consensus pattern (7 bp):
CAAACTC
Found at i:5755138 original size:29 final size:31
Alignment explanation
Indices: 5755091--5755181 Score: 91
Period size: 30 Copynumber: 3.1 Consensus size: 31
5755081 ACTCTTTTTC
* * *
5755091 CTTC-TCAAAGTCCATGACTTAGTGGCATCT
1 CTTCTTCAAAGTTCACGACTCAGTGGCATCT
* * *
5755121 CTTC-T-AAAGTTTACGACTCAATAGCATC-
1 CTTCTTCAAAGTTCACGACTCAGTGGCATCT
*
5755149 CTTCTTCAAAGTTCACAACTCAGTGGCATCT
1 CTTCTTCAAAGTTCACGACTCAGTGGCATCT
5755180 CT
1 CT
5755182 CCTCTAAGTC
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
28 4 0.08
29 18 0.38
30 24 0.50
31 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.33
Consensus pattern (31 bp):
CTTCTTCAAAGTTCACGACTCAGTGGCATCT
Found at i:5755266 original size:27 final size:27
Alignment explanation
Indices: 5755236--5755298 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
5755226 ATGACTTTTA
*
5755236 GCACCTTTTTAAGTCTACAACTCCGTG
1 GCACCTTTTTAAGTCCACAACTCCGTG
* * * *
5755263 GCACCCTTTTCAGTCCATAACTTCGTG
1 GCACCTTTTTAAGTCCACAACTCCGTG
5755290 GCACCTTTT
1 GCACCTTTT
5755299 CATTTTAAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.32, G:0.14, T:0.35
Consensus pattern (27 bp):
GCACCTTTTTAAGTCCACAACTCCGTG
Found at i:5755385 original size:68 final size:65
Alignment explanation
Indices: 5755269--5755542 Score: 248
Period size: 68 Copynumber: 4.2 Consensus size: 65
5755259 CGTGGCACCC
* * * * * *
5755269 TTTTCAGTCCATAACTTCGTGGCA-CCTTTTCATTTTAAGTTCACAACTCCATGGCATCCTTTTT
1 TTTTAAGTCCACAACTCCATGGCACCCTTTTCTTTTTAAGTCCACAACTCCATGGCA--CTTTTT
*
5755333 GT
64 CT
* * * * *
5755335 TTTTAAGTTCATAACCCCGTGGCACCCTTTTTCTTTTTAAGTCCACAACTCCGTGGCACTTTTTC
1 TTTTAAGTCCACAACTCCATGGCACCC-TTTTCTTTTTAAGTCCACAACTCCATGGCACTTTTTC
*
5755400 C
65 T
* * * * * * *
5755401 TTTTAAGTCCACAACTCCATGGTACCTTTTTTTCTTTTTAGGTCTATAACTCCGTGGCATTTTTT
1 TTTTAAGTCCACAACTCCATGGCACC--CTTTTCTTTTTAAGTCCACAACTCCATGGCA-CTTTT
5755466 TCT
63 TCT
* * * * *
5755469 TTTTAAGTCCACAACTCTATGGCACCC-TTT-TTTTTAAGTCCACAACTTCATGTCACCTTTTCC
1 TTTTAAGTCCACAACTCCATGGCACCCTTTTCTTTTTAAGTCCACAACTCCATGGCACTTTTTCT
5755532 TTTTAAGTCCA
1 TTTTAAGTCCA
5755543 TGACTCTATG
Statistics
Matches: 171, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
63 16 0.09
64 19 0.11
65 3 0.02
66 47 0.27
67 29 0.17
68 57 0.33
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.43
Consensus pattern (65 bp):
TTTTAAGTCCACAACTCCATGGCACCCTTTTCTTTTTAAGTCCACAACTCCATGGCACTTTTTCT
Found at i:5755405 original size:32 final size:33
Alignment explanation
Indices: 5755240--5755542 Score: 259
Period size: 32 Copynumber: 9.4 Consensus size: 33
5755230 CTTTTAGCAC
*
5755240 CTTTTTAAGTCTACAACTCCGTGGCACC-----
1 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
5755268 C-TTTTCAGTCCATAACTTCGTGGCACC-TTTT
1 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
5755299 CATTTTAAGTTCACAACTCCATGGCATCCTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCA-CCTTTTT
* * * *
5755333 GTTTTTAAGTTCATAACCCCGTGGCACCCTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCA-CCTTTTT
5755367 CTTTTTAAGTCCACAACTCCGTGGCA-CTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
5755399 CCTTTTAAGTCCACAACTCCATGGTACCTTTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCACC--TTTTT
* * * **
5755434 CTTTTTAGGTCTATAACTCCGTGGCATTTTTTT
1 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
** *
5755467 CTTTTTAAGTCCACAACTCTATGGCACC-CTTT
1 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
5755499 -TTTTTAAGTCCACAACTTCATGTCACC-TTTT
1 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
5755530 CCTTTTAAGTCCA
1 CTTTTTAAGTCCA
5755543 TGACTCTATG
Statistics
Matches: 221, Mismatches: 43, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
27 22 0.10
28 1 0.00
31 28 0.13
32 62 0.28
33 29 0.13
34 54 0.24
35 25 0.11
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.42
Consensus pattern (33 bp):
CTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
Found at i:5755414 original size:100 final size:99
Alignment explanation
Indices: 5755269--5755529 Score: 312
Period size: 100 Copynumber: 2.6 Consensus size: 99
5755259 CGTGGCACCC
* * * *
5755269 TTTTCAGTCCATAACTTCGTGGCACCTTTTCATTTTAAGTTCACAACTCCATGGCATCCTTTTTG
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTC-TTTTAAGTCCACAACTCCATGGCA-CCTTTTTG
*
5755334 T-TTTTAAGTTC-ATAACCCCGTGGCACCCTTTTTCT
64 TCTTTTAAGGTCTATAACCCCGTGGCA-CCTTTTTCT
* * *
5755369 TTTTAAGTCCACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCCATGGTACCTTTTTTT
1 TTTTAAGTCCACAACTCCGTGGCACCTTTT-CTTTTAAGTCCACAACTCCATGGCACCTTTTTGT
* * **
5755434 CTTTTTAGGTCTATAACTCCGTGGCATTTTTTTCT
65 CTTTTAAGGTCTATAACCCCGTGGCACCTTTTTCT
** * *
5755469 TTTTAAGTCCACAACTCTATGGCACCCTTTT-TTTTAAGTCCACAACTTCATGTCACCTTTT
1 TTTTAAGTCCACAACTCCGTGGCA-CCTTTTCTTTTAAGTCCACAACTCCATGGCACCTTTT
5755530 CCTTTTAAGT
Statistics
Matches: 139, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
99 35 0.25
100 85 0.61
101 19 0.14
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (99 bp):
TTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAGTCCACAACTCCATGGCACCTTTTTGTC
TTTTAAGGTCTATAACCCCGTGGCACCTTTTTCT
Found at i:5755805 original size:31 final size:32
Alignment explanation
Indices: 5755730--5755812 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
5755720 TTTTTTTTCC
*
5755730 TCTCTAAAGCCCACACAAGTCGGTGGCAACCT
1 TCTCAAAAGCCCACACAAGTCGGTGGCAACCT
*
5755762 TCTCAAAAGCCCACACAAGTCGGTGGCTACCT
1 TCTCAAAAGCCCACACAAGTCGGTGGCAACCT
*
5755794 TTTC-AAAGCCCACACAAGT
1 TCTCAAAAGCCCACACAAGT
5755813 TGATGGCATC
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 15 0.31
32 33 0.69
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (32 bp):
TCTCAAAAGCCCACACAAGTCGGTGGCAACCT
Found at i:5755808 original size:104 final size:107
Alignment explanation
Indices: 5755639--5755865 Score: 284
Period size: 104 Copynumber: 2.1 Consensus size: 107
5755629 TCTAAAACTT
** * *
5755639 ACACAAGTCGGTGGCAACTCCTCTGAAGCCCATATAAGTCGGTGGTAACCCTTTCAAAGCCCACA
1 ACACAAGTCGGTGGCAACTCCTCAAAAGCCCACACAAGTCGGTGGTAACCCTTTCAAAGCCCACA
* * *
5755704 CAAGTTGGTAGCAT-TC-TT-TTTTTTC-CTCTCTAAAGCCC
66 CAAGTTGATAGCATCCCTTTCTTTTTTCTCTCTCTAAAGACC
* *
5755742 ACACAAGTCGGTGGCAACCTTCTCAAAAGCCCACACAAGTCGGTGGCT-ACCTTTTCAAAGCCCA
1 ACACAAGTCGGTGGCAA-CTCCTCAAAAGCCCACACAAGTCGGTGG-TAACCCTTTCAAAGCCCA
* * *
5755806 CACAAGTTGATGGCATCCCTTTCTTTTTTCTCTCTTTAAAGACT
64 CACAAGTTGATAGCATCCCTTTCTTTTTTCTCTCTCTAAAGACC
*
5755850 ACACAAGTTGGTGGCA
1 ACACAAGTCGGTGGCA
5755866 TCCCTTTCTT
Statistics
Matches: 105, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
103 17 0.16
104 52 0.50
105 2 0.02
106 2 0.02
107 7 0.07
108 25 0.24
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (107 bp):
ACACAAGTCGGTGGCAACTCCTCAAAAGCCCACACAAGTCGGTGGTAACCCTTTCAAAGCCCACA
CAAGTTGATAGCATCCCTTTCTTTTTTCTCTCTCTAAAGACC
Done.