Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 41 of 47
Found at i:6626999 original size:105 final size:106
Alignment explanation
Indices: 6626871--6627079 Score: 307
Period size: 105 Copynumber: 2.0 Consensus size: 106
6626861 ATAAATTACT
*
6626871 ATAAAAATTAAAAATATATTTTATATTAAATTTCAAATTATAATTTTAAAA-AATAAAAATAAAA
1 ATAAAAATTAAAAATATATTTTATATTAAATTTCAAATTATAATTTAAAAATAATAAAAATAAAA
* *
6626935 AAATA-CTTATATTAAATC-TCGAATTATTATTTAAAAAGTA
66 AAATATCTTATATTAAATCAT-GAATTACTACTTAAAAAGTA
* * *
6626975 ATAAAAATTAAAGAATATATTTTATATTAAATTTTAAATTATTATTTAAAAATTAATAAAAATTA
1 ATAAAAATTAAA-AATATATTTTATATTAAATTTCAAATTATAATTTAAAAA-TAATAAAAATAA
*
6627040 AAAAATATTTTATATTAAATCATGAATTACTACTTAAAAA
64 AAAAATATCTTATATTAAATCATGAATTACTACTTAAAAA
6627080 AGAATAATAT
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
104 12 0.13
105 36 0.39
107 17 0.18
108 27 0.29
109 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (106 bp):
ATAAAAATTAAAAATATATTTTATATTAAATTTCAAATTATAATTTAAAAATAATAAAAATAAAA
AAATATCTTATATTAAATCATGAATTACTACTTAAAAAGTA
Found at i:6627024 original size:200 final size:198
Alignment explanation
Indices: 6626675--6627188 Score: 623
Period size: 200 Copynumber: 2.6 Consensus size: 198
6626665 TAAAAATAAT
*
6626675 AAAATT-AAAA-ATATTTTATATTAAATCTT-AAATTAT-TTTTTAAAAATAATAAA-AAATTTA
1 AAAATTAAAAATATATTTTATATTAAAT-TTCAAATTATATTTTAAAAAATAA-AAATAAA---A
* * * * *
6626735 AAATATTTTATAATAAATTTTGAATCACTATTTAAAAAATAATAAAAATTAAAAAATAATTTTAT
61 AAATA-TTTATATTAAATCTAGAATTATTATTT-AAAAATAATAAAAATTAAAAAATAATTTTAT
6626800 ATTAAATCTTAAATTACTATTTAAAAA-TAATTAAAAATTAAAAAATATTTTATATTAAATCATA
124 ATTAAATCTTAAATTACTATTTAAAAATTAA-TAAAAATTAAAAAATATTTTATATTAAATCATA
6626864 AATTACTA-TA
188 AATTACTACTA
6626874 AAAATTAAAAATATATTTTATATTAAATTTCAAATTATAATTTTAAAAAATAAAAATAAAAAAAT
1 AAAATTAAAAATATATTTTATATTAAATTTCAAATTAT-ATTTTAAAAAATAAAAATAAAAAAAT
* * *
6626939 ACTTATATTAAATCTCGAATTATTATTTAAAAAGTAATAAAAATTAAAGAATATATTTTATATTA
65 ATTTATATTAAATCTAGAATTATTATTTAAAAA-TAATAAAAATTAAAAAATA-ATTTTATATTA
* * *
6627004 AATTTTAAATTATTATTTAAAAATTAATAAAAATTAAAAAATATTTTATATTAAATCATGAATTA
128 AATCTTAAATTACTATTTAAAAATTAATAAAAATTAAAAAATATTTTATATTAAATCATAAATTA
6627069 CTACTTA
193 CTAC-TA
** * * * *
6627076 AAAAAGAATAATATATTTTATATTAAA-TCCTAAATTACTATTTAAAAATAATAAAAATAAAAAT
1 AAAATTAAAAATATATTTTATATTAAATTTC-AAATTA-TATTTTAAAA-AATAAAAATAAAAAA
* * * * *
6627140 AT-TTTATGTTAAATCTAAAATTATTTTTTTAAAATAATAAAATTTAAAA
63 ATATTTATATTAAATCTAGAATTATTATTTAAAAATAATAAAAATTAAAA
6627189 TTCGACATAT
Statistics
Matches: 276, Mismatches: 25, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
198 5 0.02
199 45 0.16
200 84 0.30
201 41 0.15
202 69 0.25
203 32 0.12
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (198 bp):
AAAATTAAAAATATATTTTATATTAAATTTCAAATTATATTTTAAAAAATAAAAATAAAAAAATA
TTTATATTAAATCTAGAATTATTATTTAAAAATAATAAAAATTAAAAAATAATTTTATATTAAAT
CTTAAATTACTATTTAAAAATTAATAAAAATTAAAAAATATTTTATATTAAATCATAAATTACTA
CTA
Found at i:6627174 original size:21 final size:23
Alignment explanation
Indices: 6627127--6627183 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
6627117 TTAAAAATAA
*
6627127 TAAA-AATAAAAATATTTTATGT
1 TAAATAATAAAATTATTTTATGT
*
6627149 TAAAT-CTAAAATTATTTT-T-T
1 TAAATAATAAAATTATTTTATGT
6627169 TAAAATAATAAAATT
1 T-AAATAATAAAATT
6627184 TAAAATTCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 2 0.07
21 5 0.17
22 22 0.76
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TAAATAATAAAATTATTTTATGT
Found at i:6627189 original size:50 final size:50
Alignment explanation
Indices: 6626874--6627189 Score: 254
Period size: 50 Copynumber: 6.2 Consensus size: 50
6626864 AATTACTATA
* * * *
6626874 AAAATTAAAAATATATTTTATATTAAATTTCAAATTATAATTTTAAAA-AAT
1 AAAATT-AAAA-ATATTTTATATTAAATCTAAAATTATTATTTAAAAATAAT
* * * **
6626925 AAAAATAAAAAAATACTTATATTAAATCTCGAATTATTATTTAAAAAGTAAT
1 AAAATTAAAAATAT-TTTATATTAAATCTAAAATTATTATTTAAAAA-TAAT
* *
6626977 AAAAATTAAAGAATATATTTTATATTAAATTTTAAATTATTATTTAAAAATTAAT
1 -AAAATT-AA-AA-ATATTTTATATTAAATCTAAAATTATTATTTAAAAA-TAAT
* * *
6627032 AAAAATTAAAAAATATTTTATATTAAATC-ATGAATTACTACTT--AAA-AA-
1 -AAAATT-AAAAATATTTTATATTAAATCTA-AAATTATTATTTAAAAATAAT
* * *
6627080 AGAA-T-AATATATTTTATATTAAATCCT-AAATTACTATTTAAAAATAAT
1 AAAATTAAAAATATTTTATATTAAAT-CTAAAATTATTATTTAAAAATAAT
* * * *
6627128 AAAAATAAAAATATTTTATGTTAAATCTAAAATTATTTTTTTAAAATAAT
1 AAAATTAAAAATATTTTATATTAAATCTAAAATTATTATTTAAAAATAAT
*
6627178 AAAATTTAAAAT
1 AAAATTAAAAAT
6627190 TCGACATATG
Statistics
Matches: 217, Mismatches: 31, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
44 28 0.13
45 1 0.00
46 4 0.02
47 5 0.02
48 3 0.01
49 8 0.04
50 76 0.35
51 8 0.04
52 3 0.01
53 30 0.14
54 4 0.02
55 44 0.20
56 3 0.01
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (50 bp):
AAAATTAAAAATATTTTATATTAAATCTAAAATTATTATTTAAAAATAAT
Found at i:6627797 original size:28 final size:29
Alignment explanation
Indices: 6627765--6627821 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
6627755 TAAGTAATTC
*
6627765 TAAAAGTTATTA-TTTTCTTATATTTAAA
1 TAAAAGTTACTATTTTTCTTATATTTAAA
* *
6627793 TAAAATTTACTATTTTTCTTTTATTTAAA
1 TAAAAGTTACTATTTTTCTTATATTTAAA
6627822 AAGAAAAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (29 bp):
TAAAAGTTACTATTTTTCTTATATTTAAA
Found at i:6631957 original size:28 final size:26
Alignment explanation
Indices: 6631917--6632000 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 26
6631907 TAAGAATTTA
6631917 TAAAAAATATATTTATTTTTTAATATT
1 TAAAAAATATATTTATTTTTTAA-ATT
*
6631944 TAAAAATATCTATTTATTTTTTAAATTT
1 TAAAAA-ATATATTTATTTTTTAAA-TT
*
6631972 TAATTAAAAATATACTTATTTTTTAAATT
1 T-A--AAAAATATATTTATTTTTTAAATT
6632001 ATTATTTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
27 7 0.14
28 19 0.39
29 3 0.06
30 16 0.33
31 4 0.08
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
TAAAAAATATATTTATTTTTTAAATT
Found at i:6632153 original size:27 final size:24
Alignment explanation
Indices: 6632130--6632215 Score: 70
Period size: 27 Copynumber: 3.5 Consensus size: 24
6632120 ATGTTAAAAC
6632130 TATTTTTAATTATTGTTAAATTAAA
1 TATTTTTAATTATT-TTAAATTAAA
* *
6632155 TTATTATTAAGTTATATTTTAATTCAAA
1 -TATTTTTAA-TTAT-TTTAAATT-AAA
*
6632183 TATTTGTTAAATATTTTAAATT---
1 TATTT-TTAATTATTTTAAATTAAA
6632205 TATTTTTAATT
1 TATTTTTAATT
6632216 TAATTATATA
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
21 5 0.10
22 5 0.10
26 15 0.30
27 17 0.34
28 8 0.16
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (24 bp):
TATTTTTAATTATTTTAAATTAAA
Found at i:6633548 original size:2 final size:2
Alignment explanation
Indices: 6633543--6633573 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6633533 GTTTTTTGTT
6633543 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6633574 CATAGAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6638697 original size:13 final size:13
Alignment explanation
Indices: 6638679--6638717 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
6638669 TTTCAACGAT
6638679 TTGTATCGATACA
1 TTGTATCGATACA
6638692 TTGTATCGATACA
1 TTGTATCGATACA
6638705 -TGTATCGATACA
1 TTGTATCGATACA
6638717 T
1 T
6638718 AAGTTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:6638710 original size:12 final size:12
Alignment explanation
Indices: 6638680--6638717 Score: 67
Period size: 12 Copynumber: 3.1 Consensus size: 12
6638670 TTCAACGATT
6638680 TGTATCGATACA
1 TGTATCGATACA
6638692 TTGTATCGATACA
1 -TGTATCGATACA
6638705 TGTATCGATACA
1 TGTATCGATACA
6638717 T
1 T
6638718 AAGTTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:6638806 original size:13 final size:13
Alignment explanation
Indices: 6638788--6638812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6638778 ATTACTCAAA
6638788 TGTATCGATACAT
1 TGTATCGATACAT
6638801 TGTATCGATACA
1 TGTATCGATACA
6638813 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6642735 original size:2 final size:2
Alignment explanation
Indices: 6642730--6642757 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6642720 ATATAAACCA
6642730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6642758 TGGTTTGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6643134 original size:16 final size:16
Alignment explanation
Indices: 6643113--6643144 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6643103 ATAAAAATAA
*
6643113 GATTGTAGAGTATCTT
1 GATTGTAGAGAATCTT
6643129 GATTGTAGAGAATCTT
1 GATTGTAGAGAATCTT
6643145 TTGAATTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (16 bp):
GATTGTAGAGAATCTT
Found at i:6644168 original size:18 final size:20
Alignment explanation
Indices: 6644145--6644186 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6644135 TTTATTATAT
*
6644145 AATTTATATT-AT-TTTTAA
1 AATTTAAATTCATATTTTAA
6644163 AATTTAAATTCATATTTTAA
1 AATTTAAATTCATATTTTAA
6644183 AATT
1 AATT
6644187 GAAGTTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 2 0.10
20 10 0.48
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
AATTTAAATTCATATTTTAA
Found at i:6644893 original size:15 final size:16
Alignment explanation
Indices: 6644855--6644895 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
6644845 TTTTTTATAA
6644855 AATTT-TAATTATCTT
1 AATTTATAATTATCTT
6644870 AATTTATAATTAT-TT
1 AATTTATAATTATCTT
6644885 -ATTTAATAATT
1 AATTT-ATAATT
6644896 TAACGTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.17
15 13 0.54
16 7 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTTATAATTATCTT
Found at i:6645828 original size:73 final size:73
Alignment explanation
Indices: 6645709--6645855 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
6645699 TGTGATATGC
* * *
6645709 TTAATGGTTTGCATCTGCTCGCCTCTTCAGCTTGGATTTTTGGTGGCTTTAGTTATTTTTAATAA
1 TTAATGATTTGCATCTCCTCGCCTCTTCAACTTGGATTTTTGGTGGCTTTAGTTATTTTTAATAA
6645774 CCTAATGG
66 CCTAATGG
6645782 TTAATGATTTGCATCTCCTCGCCTCTTCAACTTGGATTTTTGGTGGCTTTAGTTATTTTTAATAA
1 TTAATGATTTGCATCTCCTCGCCTCTTCAACTTGGATTTTTGGTGGCTTTAGTTATTTTTAATAA
6645847 CCTAATGG
66 CCTAATGG
6645855 T
1 T
6645856 AGTTTTTAGA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.19, C:0.17, G:0.18, T:0.46
Consensus pattern (73 bp):
TTAATGATTTGCATCTCCTCGCCTCTTCAACTTGGATTTTTGGTGGCTTTAGTTATTTTTAATAA
CCTAATGG
Found at i:6645877 original size:3 final size:3
Alignment explanation
Indices: 6645869--6645909 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
6645859 TTTTAGAAAT
*
6645869 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6645910 GGTTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:6646335 original size:8 final size:8
Alignment explanation
Indices: 6646324--6646385 Score: 61
Period size: 8 Copynumber: 7.1 Consensus size: 8
6646314 TCATATTTTT
6646324 AAATTAAA
1 AAATTAAA
6646332 AAATTTCAAA
1 AAA-TT-AAA
*
6646342 AAAATAAA
1 AAATTAAA
6646350 AAATTCTAAA
1 AAA-T-TAAA
*
6646360 CAATTCAAA
1 AAATT-AAA
6646369 AAATTAAA
1 AAATTAAA
6646377 AAATTAAA
1 AAATTAAA
6646385 A
1 A
6646386 TTTAGAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
8 22 0.49
9 11 0.24
10 12 0.27
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:6646402 original size:8 final size:8
Alignment explanation
Indices: 6646324--6646402 Score: 52
Period size: 8 Copynumber: 9.4 Consensus size: 8
6646314 TCATATTTTT
*
6646324 AAATTAAA
1 AAATTTAA
6646332 AAATTTCAAA
1 AAATTT--AA
* *
6646342 AAAATAAA
1 AAATTTAA
6646350 AAATTCTAA
1 AAATT-TAA
*
6646359 ACAATTCAA
1 A-AATTTAA
*
6646368 AAAATTAA
1 AAATTTAA
*
6646376 AAAATT-A
1 AAATTTAA
6646383 AAATTTAGA
1 AAATTTA-A
6646392 AAATTTAA
1 AAATTTAA
6646400 AAA
1 AAA
6646403 GTTCTTATAT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
7 6 0.11
8 26 0.46
9 14 0.25
10 10 0.18
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (8 bp):
AAATTTAA
Found at i:6646402 original size:17 final size:16
Alignment explanation
Indices: 6646324--6646402 Score: 63
Period size: 18 Copynumber: 4.6 Consensus size: 16
6646314 TCATATTTTT
6646324 AAATTAAAAAATTTCAAA
1 AAATTAAAAAATTT--AA
*
6646342 AAAATAAAAAATTCTAA
1 AAATTAAAAAATT-TAA
*
6646359 ACAATTCAAAAAATTAAA
1 A-AATT-AAAAAATTTAA
6646377 AAATT--AAAATTTAGA
1 AAATTAAAAAATTTA-A
6646392 AAATTTAAAAA
1 AAA-TTAAAAA
6646403 GTTCTTATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
14 7 0.14
15 4 0.08
16 2 0.04
17 7 0.14
18 21 0.42
19 9 0.18
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (16 bp):
AAATTAAAAAATTTAA
Found at i:6646516 original size:18 final size:19
Alignment explanation
Indices: 6646495--6646560 Score: 64
Period size: 18 Copynumber: 3.5 Consensus size: 19
6646485 TATTTTTGTA
6646495 AGAATTTTTA-AAATTTTT
1 AGAATTTTTAGAAATTTTT
* *
6646513 AGAATTTTTAATAAAATTTT
1 AGAATTTTT-AGAAATTTTT
* *
6646533 ATGAATTTTTAGATACTTTT
1 A-GAATTTTTAGAAATTTTT
6646553 A-AATTTTT
1 AGAATTTTT
6646561 TAATTTTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 16 0.39
19 1 0.02
20 16 0.39
21 8 0.20
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (19 bp):
AGAATTTTTAGAAATTTTT
Found at i:6646527 original size:21 final size:21
Alignment explanation
Indices: 6646503--6646543 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6646493 TAAGAATTTT
6646503 TAAAATTTT-TAGAATTTTTAA
1 TAAAATTTTAT-GAATTTTTAA
6646524 TAAAATTTTATGAATTTTTA
1 TAAAATTTTATGAATTTTTA
6646544 GATACTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TAAAATTTTATGAATTTTTAA
Found at i:6646582 original size:16 final size:16
Alignment explanation
Indices: 6646480--6646593 Score: 59
Period size: 20 Copynumber: 6.4 Consensus size: 16
6646470 AATTTTTTTT
*
6646480 ATTTTTATTTTTGTAAGA
1 ATTTTTAATTTT-TAA-A
*
6646498 ATTTTTAAAATTTTTAGA
1 ATTTTT--AATTTTTAAA
*
6646516 ATTTTTAATAAAATTTTATGA
1 ATTTTTAAT----TTTTA-AA
6646537 ATTTTTAGATACTTTTAAA
1 ATTTTTA-AT--TTTTAAA
*
6646556 TTTTTTAATTTTATAAA
1 ATTTTTAATTTT-TAAA
*
6646573 ATTTTT-ATTTTTTAA
1 ATTTTTAATTTTTAAA
6646588 ATTTTT
1 ATTTTT
6646594 TTATAATTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 21
0.74 0.06 0.19
Matches are distributed among these distances:
15 9 0.11
16 11 0.14
17 9 0.11
18 15 0.19
19 9 0.11
20 16 0.20
21 9 0.11
22 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (16 bp):
ATTTTTAATTTTTAAA
Found at i:6646593 original size:9 final size:9
Alignment explanation
Indices: 6646499--6646610 Score: 61
Period size: 10 Copynumber: 12.1 Consensus size: 9
6646489 TTTGTAAGAA
*
6646499 TTTTTAAAA
1 TTTTTAAAT
6646508 TTTTTAGAAT
1 TTTTTA-AAT
6646518 TTTTAATAAAAT
1 TTTT--T-AAAT
* *
6646530 TTTATGAA-
1 TTTTTAAAT
*
6646538 TTTTTAGAT
1 TTTTTAAAT
*
6646547 ACTTTTAAAT
1 -TTTTTAAAT
6646557 TTTTT-AAT
1 TTTTTAAAT
* *
6646565 TTTATAAAA
1 TTTTTAAAT
6646574 TTTTT--AT
1 TTTTTAAAT
6646581 TTTTTAAATT
1 TTTTTAAA-T
6646591 TTTTTATAAT
1 TTTTTA-AAT
*
6646601 TTTTTGAAT
1 TTTTTAAAT
6646610 T
1 T
6646611 GCTTTGATTT
Statistics
Matches: 78, Mismatches: 14, Indels: 22
0.68 0.12 0.19
Matches are distributed among these distances:
7 6 0.08
8 12 0.15
9 23 0.29
10 27 0.35
11 2 0.03
12 7 0.09
13 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:6646594 original size:16 final size:17
Alignment explanation
Indices: 6646549--6646594 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 17
6646539 TTTTAGATAC
6646549 TTTTAAATTTTTTAATT
1 TTTTAAATTTTTTAATT
* *
6646566 TTATAAAATTTTT-ATT
1 TTTTAAATTTTTTAATT
6646582 TTTTAAATTTTTT
1 TTTTAAATTTTTT
6646595 TATAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTAAATTTTTTAATT
Found at i:6646808 original size:2 final size:2
Alignment explanation
Indices: 6646801--6646826 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6646791 ATTTTGATTT
6646801 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6646827 ATTACAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6646955 original size:22 final size:22
Alignment explanation
Indices: 6646904--6646965 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
6646894 ATTTTGTGAG
*
6646904 ATATAT-ATAATTTTATTAATTTT
1 ATATATAATAATATTATT--TTTT
*
6646927 ATTTATAA-AATAATTATTTTTT
1 ATATATAATAAT-ATTATTTTTT
6646949 ATATATAATAATATTAT
1 ATATATAATAATATTAT
6646966 AGGAGAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
22 16 0.48
23 11 0.33
24 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATATATAATAATATTATTTTTT
Found at i:6650046 original size:13 final size:13
Alignment explanation
Indices: 6650028--6650053 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6650018 TACACCAAGT
6650028 ATGTATCGATACA
1 ATGTATCGATACA
6650041 ATGTATCGATACA
1 ATGTATCGATACA
6650054 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:6652307 original size:21 final size:21
Alignment explanation
Indices: 6652274--6652323 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
6652264 TTGCAAGTTG
*
6652274 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
6652296 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
6652317 AAATAAA
1 AAATAAA
6652324 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:6654139 original size:15 final size:15
Alignment explanation
Indices: 6654119--6654149 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6654109 TAAAAATGTC
*
6654119 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
6654134 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
6654149 C
1 C
6654150 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:6656237 original size:13 final size:13
Alignment explanation
Indices: 6656219--6656256 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
6656209 CATTTTTCTT
6656219 TGTATCGATACAA
1 TGTATCGATACAA
*
6656232 TGTATCGATACAC
1 TGTATCGATACAA
6656245 TGTATCGATACA
1 TGTATCGATACA
6656257 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6656411 original size:20 final size:20
Alignment explanation
Indices: 6656368--6656413 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
6656358 AAATCTTTTG
6656368 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
6656389 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
6656409 CAAAA
1 CAAAA
6656414 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:6660556 original size:27 final size:27
Alignment explanation
Indices: 6660521--6660574 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
6660511 TTGAAGTCTT
*
6660521 CTTGTAAAGA-AAGAATTGGAGTATCCC
1 CTTGAAAAGATAAG-ATTGGAGTATCCC
*
6660548 CTTGAAAAGATAAGGTTGGAGTATCCC
1 CTTGAAAAGATAAGATTGGAGTATCCC
6660575 TAACAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (27 bp):
CTTGAAAAGATAAGATTGGAGTATCCC
Found at i:6662468 original size:13 final size:13
Alignment explanation
Indices: 6662452--6662476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6662442 ATGGTACAAC
6662452 ATATCGATACATT
1 ATATCGATACATT
6662465 ATATCGATACAT
1 ATATCGATACAT
6662477 GATGAATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
ATATCGATACATT
Found at i:6671204 original size:13 final size:13
Alignment explanation
Indices: 6671183--6671235 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
6671173 CGATACATGG
*
6671183 TACAATGTATCGA
1 TACATTGTATCGA
6671196 TACATTGTATCGA
1 TACATTGTATCGA
6671209 TACA-TG-AT-G-
1 TACATTGTATCGA
6671218 -A-ATTGTATCGA
1 TACATTGTATCGA
6671229 TACATTG
1 TACATTG
6671236 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:6671205 original size:33 final size:33
Alignment explanation
Indices: 6671167--6671235 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
6671157 TTACCACTGT
*
6671167 TTGTATCGATACATGGT-ACAATGTATCGATACA
1 TTGTATCGATACATGATGA-AATGTATCGATACA
*
6671200 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAAATGTATCGATACA
6671233 TTG
1 TTG
6671236 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGATGAAATGTATCGATACA
Found at i:6677902 original size:20 final size:19
Alignment explanation
Indices: 6677857--6677911 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
6677847 TGTATCGATA
* * *
6677857 CATTGTATAGATATATGCT
1 CATTGTATCGATACATACT
6677876 CATTGTATCGATACATACT
1 CATTGTATCGATACATACT
6677895 CAATTGTATCGATACAT
1 C-ATTGTATCGATACAT
6677912 GAAACTGACA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:6680666 original size:22 final size:22
Alignment explanation
Indices: 6680623--6680672 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
6680613 ATTAATATTA
* *
6680623 ATTTTTTCATATCATGTTTAATT
1 ATTTTTTCATATCA-GTATAATC
6680646 ATTTTTCTCATATCA-TATAATC
1 ATTTTT-TCATATCAGTATAATC
6680668 ATTTT
1 ATTTT
6680673 ATATACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 6 0.25
24 8 0.33
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTTTCATATCAGTATAATC
Found at i:6685107 original size:16 final size:17
Alignment explanation
Indices: 6685072--6685107 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
6685062 CATGAATATC
*
6685072 TTTATGTTTATGTAACA
1 TTTATGTTCATGTAACA
6685089 TTTATGTTCATGT-ACA
1 TTTATGTTCATGTAACA
6685105 TTT
1 TTT
6685108 CCATATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.25, C:0.08, G:0.11, T:0.56
Consensus pattern (17 bp):
TTTATGTTCATGTAACA
Found at i:6685812 original size:20 final size:21
Alignment explanation
Indices: 6685783--6685856 Score: 84
Period size: 20 Copynumber: 3.7 Consensus size: 21
6685773 TTATCTGCTG
6685783 TTTA-TTTAAATTTAAAATT-
1 TTTATTTTAAATTTAAAATTA
**
6685802 TTTATTTTAAAAAT-AAATTA
1 TTTATTTTAAATTTAAAATTA
*
6685822 TTTATATTTAAATTTAAGATTA
1 TTTAT-TTTAAATTTAAAATTA
6685844 TTT-TTTTAAATTT
1 TTTATTTTAAATTT
6685857 TAGAGATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
19 9 0.20
20 21 0.46
21 8 0.17
22 8 0.17
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (21 bp):
TTTATTTTAAATTTAAAATTA
Found at i:6685824 original size:22 final size:22
Alignment explanation
Indices: 6685799--6685848 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
6685789 TAAATTTAAA
6685799 ATTTTTATTTTAAAAATAA-ATT
1 ATTTTTA-TTTAAAAATAAGATT
* **
6685821 ATTTATATTTAAATTTAAGATT
1 ATTTTTATTTAAAAATAAGATT
6685843 ATTTTT
1 ATTTTT
6685849 TTAAATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTTATTTAAAAATAAGATT
Found at i:6688979 original size:79 final size:79
Alignment explanation
Indices: 6688882--6689076 Score: 221
Period size: 79 Copynumber: 2.5 Consensus size: 79
6688872 AACGGGGTTG
* * ** * *
6688882 GAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGA-TTAGGAA
1 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAAT-ATTTAGGAA
*
6688946 ATAAAATCAAGATTA
65 ATAAAACCAAGATTA
* * *
6688961 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATTAATATTTTGGAAA
1 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTAGGAAA
* ** * *
6689026 TAAAGCCGGGGTTG
66 TAAAACCAAGATTA
**
6689040 GAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCC
1 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCC
6689077 GATGAAATAA
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
78 1 0.01
79 97 0.99
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (79 bp):
GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTAGGAAA
TAAAACCAAGATTA
Found at i:6689286 original size:80 final size:79
Alignment explanation
Indices: 6689167--6689366 Score: 301
Period size: 80 Copynumber: 2.5 Consensus size: 79
6689157 ATTTGTGGAG
* * * *
6689167 AATTGGTGTTTTAGAAATAAAACCAGGGTTCGAGTATCCCCTCGAGAATAATGGGGTTGGAGTAT
1 AATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT
6689232 CCCCGATTATGAAA
66 CCCCGATTATGAAA
* *
6689246 AATTGATGTTTTAGAAATAAAACCGGGGGTTGGAGCATCCCCTCGAAAATAACGGGGTTGGAGTA
1 AATTGGTGTTTTAGAAATAAAACC-GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTA
6689311 TCCCCGATTATGAAA
65 TCCCCGATTATGAAA
* * *
6689326 AATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCC
1 AATTGGTG-TTTTAGAAATAAAACCGGGGTTGGAGTATCCC
6689367 TGATTAAAGG
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 23 0.21
80 71 0.66
81 14 0.13
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
AATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT
CCCCGATTATGAAA
Found at i:6689450 original size:51 final size:51
Alignment explanation
Indices: 6689298--6689485 Score: 277
Period size: 51 Copynumber: 3.6 Consensus size: 51
6689288 TCGAAAATAA
* *
6689298 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTG-TTTTAGAAATAAAAC
* * * * *
6689350 CGGAGTTGGAGTATCCCTGATTAAAGGAAAATTGGTGTTTTAAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTAGAAATAAAAC
* *
6689402 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAC
6689453 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
6689486 AGAAACTTAA
Statistics
Matches: 119, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
51 55 0.46
52 52 0.44
53 12 0.10
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAC
Found at i:6691864 original size:13 final size:13
Alignment explanation
Indices: 6691846--6691871 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6691836 ACAAAGATCG
6691846 ATGTATCGATACA
1 ATGTATCGATACA
6691859 ATGTATCGATACA
1 ATGTATCGATACA
6691872 TTCTTGTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:6694216 original size:22 final size:23
Alignment explanation
Indices: 6694170--6694225 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
6694160 TGGACATGTT
6694170 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
*
6694193 AAAAATGCATGAAATATAAT-AA
1 AAAAATGCATGAAACATAATAAA
6694215 AAAAATGCATG
1 AAAAATGCATG
6694226 GTCAAAGGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 13 0.41
23 19 0.59
ACGTcount: A:0.62, C:0.07, G:0.11, T:0.20
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:6695193 original size:12 final size:12
Alignment explanation
Indices: 6695176--6695201 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6695166 ATATTCATAC
6695176 ATGTATCGATAT
1 ATGTATCGATAT
6695188 ATGTATCGATAT
1 ATGTATCGATAT
6695200 AT
1 AT
6695202 TGAAAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATGTATCGATAT
Found at i:6696353 original size:29 final size:28
Alignment explanation
Indices: 6695781--6697002 Score: 1484
Period size: 28 Copynumber: 43.0 Consensus size: 28
6695771 TAAAAAAAAT
*
6695781 GTGCCACTAACTTGTGGGCTTTGAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6695809 GTGCCACTGACTCGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6695836 GGTGCCACTGACTTGCGTGGGCTTTAAAAGG
1 -GTGCCACTGACTT--GTGGGCTTTGAAAGA
*
6695867 GTGCCACTGACTTGCGCGGGCTTTGAAAGA
1 GTGCCACTGACTT--GTGGGCTTTGAAAGA
* * *
6695897 ATGCCACTAACTCGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6695924 GATGCCACTGACTTGTGCGCTTTGAAAGA
1 G-TGCCACTGACTTGTGGGCTTTGAAAGA
*
6695953 GTGCCACTGACTCGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
** * *
6695980 GGTATCACTAACTCGTGGGC-TTGAAAG-
1 -GTGCCACTGACTTGTGGGCTTTGAAAGA
6696007 GATGCCACTGACTTGTGGGCTTTGAAAGA
1 G-TGCCACTGACTTGTGGGCTTTGAAAGA
*
6696036 GTGCCACTGACTCGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6696063 GGTGCCACTGACTTGTGTGGGCTTTAAAAGA
1 -GTGCCACTGAC-T-TGTGGGCTTTGAAAGA
* * *
6696094 ATACCACTGACTCGTGGGCTTTGAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696122 ATGCCACTGACTCGTGGGCTTTGAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* * *
6696149 GATGCCACTAAATTGTGGGC-TTGAAAGG
1 G-TGCCACTGACTTGTGGGCTTTGAAAGA
6696177 GTGCCACTGACTTGTGGGCTTTGAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6696205 GTGCCACTGACTCGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696232 GGTGCCACTGACTCGTGGGC-TTGAAAGG
1 -GTGCCACTGACTTGTGGGCTTTGAAAGA
6696260 GTGCCACTGACTTGTGGGCTTTGAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6696288 GTGCCACTAACTTGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6696315 GGTGCCACTGACTTGTGGGCTTTGAAAAAA
1 -GTGCCACTGACTTGTGGGCTTTG-AAAGA
*
6696345 GTGCCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
* *
6696374 GCGCCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
*
6696403 GTGCCACTGACTTGTGGGCTTTAAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAA-GA
*
6696432 GTGCCACTAACTTGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
6696459 GGTGCCACTGACTTGTGGGCTTTGAAAAGA
1 -GTGCCACTGACTTGTGGGCTTTG-AAAGA
*
6696489 GTGCCACTGACTTGTGGGCTTTGAAAATA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
6696518 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
*
6696547 GTGCCACTGACTTGTGGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696575 GTGCCACTGACTTGTGAGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* * *
6696603 GTGCCACTGATTTGTAGGCTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
6696631 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
* *
6696660 GTGCCACTGATTTGTGGGCTTTTAAAAGA
1 GTGCCACTGACTTGTGGGC-TTTGAAAGA
*
6696689 GTACCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
* * * *
6696718 GTGCCACTGATTTGTAGACTTTGAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6696746 GTGCCACTGACTTATGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
6696775 GTTGCCA-TCGACTCGTGTGGGCTTTGAAAAGA
1 G-TGCCACT-GACT--TGTGGGCTTTG-AAAGA
** *
6696807 GTGCCAAAGACTTATGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTG-AAAGA
6696836 GTGCCACTGACTTGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696863 GGTGCCACTGACTTGTGGGCTTTGGAAGG
1 -GTGCCACTGACTTGTGGGCTTTGAAAGA
*
6696892 GTGCCACTAACTTGTGGGCTTTGAAA-A
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696919 GGTGCCACTGACTTGTGGGCTTTGGAAGG
1 -GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696948 GTGCCACTGACTTGTGGGCTTTGGAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAGA
* *
6696976 GTGCCACTAACTTGTGAGCTTTGAAAG
1 GTGCCACTGACTTGTGGGCTTTGAAAG
6697003 GGTTTGAACG
Statistics
Matches: 1056, Mismatches: 97, Indels: 82
0.86 0.08 0.07
Matches are distributed among these distances:
26 1 0.00
27 75 0.07
28 568 0.54
29 301 0.29
30 84 0.08
31 10 0.01
32 17 0.02
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (28 bp):
GTGCCACTGACTTGTGGGCTTTGAAAGA
Found at i:6698237 original size:1 final size:1
Alignment explanation
Indices: 6698233--6698289 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
6698223 TTTTTTGCTA
* * * * * * *
6698233 TTTTTTCTTGTTTTTTTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6698290 GGGTGTAAAG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.88
Consensus pattern (1 bp):
T
Found at i:6698249 original size:13 final size:12
Alignment explanation
Indices: 6698222--6698289 Score: 75
Period size: 13 Copynumber: 5.5 Consensus size: 12
6698212 GACCCTTCTA
*
6698222 TTTTTTTGCTATT
1 TTTTTTTG-TTTT
*
6698235 TTTTCTTGTTTTT
1 TTTTTTTG-TTTT
6698248 TTTTTTTGTTTT
1 TTTTTTTGTTTT
6698260 TTTGTTTTG-TTT
1 TTT-TTTTGTTTT
*
6698272 TTGTTTTGTTTT
1 TTTTTTTGTTTT
6698284 TTTTTT
1 TTTTTT
6698290 GGGTGTAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
11 5 0.11
12 20 0.43
13 22 0.47
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.85
Consensus pattern (12 bp):
TTTTTTTGTTTT
Found at i:6698260 original size:24 final size:24
Alignment explanation
Indices: 6698222--6698286 Score: 78
Period size: 24 Copynumber: 2.6 Consensus size: 24
6698212 GACCCTTCTA
6698222 TTTTTTTGCTATTTTTTCTTGTT-TTT
1 TTTTTTTG-T-TTTTTTCTT-TTGTTT
*
6698248 TTTTTTTGTTTTTTTGTTTTGTTT
1 TTTTTTTGTTTTTTTCTTTTGTTT
*
6698272 TTGTTTTGTTTTTTT
1 TTTTTTTGTTTTTTT
6698287 TTTGGGTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 2 0.06
24 25 0.69
25 1 0.03
26 8 0.22
ACGTcount: A:0.02, C:0.03, G:0.11, T:0.85
Consensus pattern (24 bp):
TTTTTTTGTTTTTTTCTTTTGTTT
Found at i:6698288 original size:16 final size:16
Alignment explanation
Indices: 6698233--6698290 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
6698223 TTTTTTGCTA
*
6698233 TTTTTTCTTGTTTT-T
1 TTTTTTTTTGTTTTGT
*
6698248 TTTTTTTGTTTTTTTGT
1 TTTTTTT-TTGTTTTGT
*
6698265 TTTGTTTTTGTTTTGT
1 TTTTTTTTTGTTTTGT
6698281 TTTTTTTTTG
1 TTTTTTTTTG
6698291 GGTGTAAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
15 6 0.17
16 23 0.64
17 7 0.19
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (16 bp):
TTTTTTTTTGTTTTGT
Found at i:6698290 original size:11 final size:11
Alignment explanation
Indices: 6698222--6698289 Score: 68
Period size: 11 Copynumber: 6.1 Consensus size: 11
6698212 GACCCTTCTA
6698222 TTTTTTTGCTATT
1 TTTTTTTG-T-TT
*
6698235 TTTTCTTGTTT
1 TTTTTTTGTTT
*
6698246 TTTTTTT-TTG
1 TTTTTTTGTTT
6698256 TTTTTTTGTTT
1 TTTTTTTGTTT
*
6698267 TGTTTTTGTTT
1 TTTTTTTGTTT
6698278 TGTTTTTT-TTT
1 T-TTTTTTGTTT
6698289 T
1 T
6698290 GGGTGTAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
10 9 0.19
11 25 0.53
12 6 0.13
13 7 0.15
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.85
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:6709963 original size:26 final size:27
Alignment explanation
Indices: 6709934--6709984 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
6709924 TTTCTTGATT
*
6709934 GAAA-AACGGGGTTGGAGTATCCCCTC
1 GAAAGAACAGGGTTGGAGTATCCCCTC
*
6709960 GAAAGAATAGGGTTGGAGTATCCCC
1 GAAAGAACAGGGTTGGAGTATCCCC
6709985 GATGATGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (27 bp):
GAAAGAACAGGGTTGGAGTATCCCCTC
Found at i:6710885 original size:22 final size:22
Alignment explanation
Indices: 6710853--6710907 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
6710843 TGGACATGTT
*
6710853 AAAAATACATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
6710875 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
6710897 AAAAATGCATG
1 AAAAATGCATG
6710908 GTCAAAGGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:6711873 original size:12 final size:12
Alignment explanation
Indices: 6711856--6711881 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6711846 ATATTCATAC
6711856 ATGTATCGATAT
1 ATGTATCGATAT
6711868 ATGTATCGATAT
1 ATGTATCGATAT
6711880 AT
1 AT
6711882 TGAAAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATGTATCGATAT
Found at i:6711880 original size:32 final size:32
Alignment explanation
Indices: 6711839--6711901 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
6711829 TTGAAGAATA
* *
6711839 TATCGATATATTCATACATGTATCGATATATG
1 TATCGATATATTCAAAAATGTATCGATATATG
*
6711871 TATCGATATATTGAAAAATGTATCGATATAT
1 TATCGATATATTCAAAAATGTATCGATATAT
6711902 CTGGGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.40
Consensus pattern (32 bp):
TATCGATATATTCAAAAATGTATCGATATATG
Found at i:6712213 original size:22 final size:21
Alignment explanation
Indices: 6712153--6712214 Score: 76
Period size: 19 Copynumber: 3.0 Consensus size: 21
6712143 AGCGATACAC
6712153 TGTATCGATAC-ATTACTT--A
1 TGTATCGATACAATTA-TTGAA
*
6712172 TGTATCGATACATTTATTGAA
1 TGTATCGATACAATTATTGAA
6712193 TGTATCGATACAAATTATTGAA
1 TGTATCGATAC-AATTATTGAA
6712215 ATTCAAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
19 13 0.35
20 3 0.08
21 12 0.32
22 9 0.24
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.40
Consensus pattern (21 bp):
TGTATCGATACAATTATTGAA
Found at i:6716902 original size:155 final size:156
Alignment explanation
Indices: 6716526--6716890 Score: 420
Period size: 155 Copynumber: 2.4 Consensus size: 156
6716516 AAAAGGCTAA
** * * * *
6716526 GTTC-AAAAAAATTATGAAAATGCCTCTAGGGGATACCTTCGACGTAGAAGTACCTGATATCCCT
1 GTTCTAAAAAAATTACAAAAATACCCCTTGGGGATACCTTCGACGTAAAAGTACCTGATATCCCT
* * *
6716590 AAAGGACTTAAAAAGGACTATAGAAATGATGAACCTATCTTAAATACCCACCTTTGATATAAAAG
66 AAAGGACTTAAAAAGGACTATAGAAATGATGAACCTATCCTAAATACCCACCTTCGACATAAAAG
* * *
6716655 CAGACCCAGTTATAACCTAGAACTTG
131 CAAACCCAGTGATAACCTAGAACTCG
* ** * * * * * *
6716681 ATT-TTGAAAAATTACAAAAATA-CCCTTAGAGGATACCTTTGATGTGAAAGTATCTTGGTATCC
1 GTTCTAAAAAAATTACAAAAATACCCCTT-GGGGATACCTTCGACGTAAAAGTA-CCTGATATCC
* *
6716744 CTAAAGGA-TCTAAAAATGACT-TAGAAATGATGAACCTATCCTAAATATCCACCTTCGACATAA
64 CTAAAGGACT-TAAAAAGGACTATAGAAATGATGAACCTATCCTAAATACCCACCTTCGACATAA
*
6716807 AAGCAAA-CCTGATGATAACCTAAGAA-TCG
128 AAGCAAACCCAG-TGATAACCT-AGAACTCG
6716836 GTTCTAAAAAAATTACAAAAATACCCCTTGGGGATACCTTCGACGTAAAAGTACC
1 GTTCTAAAAAAATTACAAAAATACCCCTTGGGGATACCTTCGACGTAAAAGTACC
6716891 AAATAATCCT
Statistics
Matches: 170, Mismatches: 32, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
154 6 0.04
155 92 0.54
156 67 0.39
157 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (156 bp):
GTTCTAAAAAAATTACAAAAATACCCCTTGGGGATACCTTCGACGTAAAAGTACCTGATATCCCT
AAAGGACTTAAAAAGGACTATAGAAATGATGAACCTATCCTAAATACCCACCTTCGACATAAAAG
CAAACCCAGTGATAACCTAGAACTCG
Found at i:6719068 original size:163 final size:165
Alignment explanation
Indices: 6718890--6719256 Score: 392
Period size: 163 Copynumber: 2.2 Consensus size: 165
6718880 AATTTAATAT
* ** ** *
6718890 TAATATTAGATGAATTTTAAAAATT-TTAAGCCAAGAAAAATCCTTTCGAAAATATTTATGGAGA
1 TAATATTTGATGAATTTTAAAAATTAAAAAGCCAAG-AAAATCCTCCCGAAAA-ATTTACGGAGA
6718954 AAAAAACT-TGGT-TTTTCGAAA-AAGAGAA-TTTCAAAGAAAAAATTCAATAACTCATGAAAAT
64 AAAAAACTCT-GTATTTTCGAAATAAGAGAAGTTT-AAAGAAAAAATTCAA-AACTCATGAAAAT
* * * * * * *
6719015 GGATTAAATTTTCAAAACTG-TTCTCATGTGAATTAAAT-A
126 GAATGAAATTTTAAAAACTGATT-TAATATAAAATAAATGA
* *** *
6719054 -AATATTTTATGAATTTTAAAAATTAAAAATTGATGAAAATCCTCCCGAAAAATTTACGGAGAAA
1 TAATATTTGATGAATTTTAAAAATTAAAAAGCCAAGAAAATCCTCCCGAAAAATTTACGGAGAAA
* * * *
6719118 AAAGCTCTTTATTTTGGAAATAATAGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAATGAATG
66 AAAACTCTGTATTTTCGAAATAAGAGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAATGAATG
* *
6719183 AATTTTTAAAAATTGATTTAATATAAAATAAATGA
131 AAATTTTAAAAACTGATTTAATATAAAATAAATGA
*
6719218 TAATATTTGATGAATTTTAAAAATTAAAAA-CGAAGAAAA
1 TAATATTTGATGAATTTTAAAAATTAAAAAGCCAAGAAAA
6719257 ATCACCTTAG
Statistics
Matches: 168, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
162 18 0.11
163 84 0.50
164 35 0.21
165 31 0.18
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.32
Consensus pattern (165 bp):
TAATATTTGATGAATTTTAAAAATTAAAAAGCCAAGAAAATCCTCCCGAAAAATTTACGGAGAAA
AAAACTCTGTATTTTCGAAATAAGAGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAATGAATG
AAATTTTAAAAACTGATTTAATATAAAATAAATGA
Found at i:6719322 original size:165 final size:163
Alignment explanation
Indices: 6718977--6719340 Score: 396
Period size: 165 Copynumber: 2.2 Consensus size: 163
6718967 TTTCGAAAAA
* * * *
6718977 GAGAATTTCAAAGAAAAAATTCAATAACTCATGAAAATGGATTAAATTTTCAAAACTGTTCTCAT
1 GAGAATTT-AAAGAAAAAATTCAA-AACTCATGAAAATGAATGAAATTTTAAAAACTGTTCTAAT
* * * * * * *
6719042 GTGAATTAAATAAATATTTTATGAATTTTAAAAATTAAAAATTGATGAAAATCCTCCCGAAAAAT
64 ATAAAATAAATAAATATTTGATGAATTTTAAAAATTAAAAATCGAAGAAAATCCTCCAGAAAAAT
* ** *
6719107 TTACGGAGAAAAAAGCTCTTTATTTTGGAAATAAT
129 TTACGGAGAAAAAAGCACCATATTTAGGAAATAAT
* *
6719142 -AGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAATGAATGAATTTTTAAAAATTGATT-TAAT
1 GAGAA-TTTAAAGAAAAAATTCAAAACTCATGAAAATGAATGAAATTTTAAAAACTG-TTCTAAT
*
6719205 ATAAAATAAATGATAATATTTGATGAATTTTAAAAATTAAAAA-CGAAGAAAAATCAC-CTTAGA
64 ATAAAATAAAT-A-AATATTTGATGAATTTTAAAAATTAAAAATCGAAG-AAAATC-CTC-CAGA
* * *
6719268 AAAATTTACGGAGTAGAAAGCACCATATTTAGGAAA-ATT
124 AAAATTTACGGAGAAAAAAGCACCATATTTAGGAAATAAT
* *
6719307 GAGAATTTTAAGAAAAAATTCAAAAACTCTTGAA
1 GAGAATTTAAAGAAAAAATTC-AAAACTCATGAA
6719341 GACGATTTAA
Statistics
Matches: 167, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
163 39 0.23
164 25 0.15
165 55 0.33
166 48 0.29
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.30
Consensus pattern (163 bp):
GAGAATTTAAAGAAAAAATTCAAAACTCATGAAAATGAATGAAATTTTAAAAACTGTTCTAATAT
AAAATAAATAAATATTTGATGAATTTTAAAAATTAAAAATCGAAGAAAATCCTCCAGAAAAATTT
ACGGAGAAAAAAGCACCATATTTAGGAAATAAT
Found at i:6719390 original size:166 final size:165
Alignment explanation
Indices: 6718978--6719400 Score: 382
Period size: 166 Copynumber: 2.6 Consensus size: 165
6718968 TTCGAAAAAG
* * * * * * *
6718978 AGAA-TTTCAAAGAAAAAATTCAATAACTCATGAAAATGGATTAAATTTTCAAAACTG-TTCTCA
1 AGAAGTTT-AAAGAAAAAATTCAA-AACTCATGAAAACGAATGAATTTTTAAAAATTGATT-TAA
* * * * * *
6719041 TGTGAATTAAAT-A-AATATTTTATGAATTTTAAAAATTAAAAATTGATGAAAATCCTCCCGAAA
63 TATAAATTAAATGATAATATTTGATGAATTTTAAAAATTAAAAATCGAAGAAAATCCTCCAGAAA
* ** *
6719104 AATTTACGGAGAAAAAAGCTCTTTATTTTGGAAATAAT
128 AATTTACGGAGAAAAAAGCACCATATTTAGGAAATAAT
*
6719142 AGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAATGAATGAATTTTTAAAAATTGATTTAATAT
1 AGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAACGAATGAATTTTTAAAAATTGATTTAATAT
* *
6719207 AAAATAAATGATAATATTTGATGAATTTTAAAAATTAAAAA-CGAAGAAAAATCAC-CTTAGAAA
66 AAATTAAATGATAATATTTGATGAATTTTAAAAATTAAAAATCGAAG-AAAATC-CTC-CAGAAA
* * *
6719270 AATTTACGGAGTAGAAAGCACCATATTTAGGAAA-ATT
128 AATTTACGGAGAAAAAAGCACCATATTTAGGAAATAAT
* * * * * * *
6719307 GAGAA-TTTTAAGAAAAAATTCAAAAACTCTTGAAGACGATTTAATTTTTGAGAAA-TGATTTTA
1 -AGAAGTTTAAAGAAAAAATTC-AAAACTCATGAAAACGAATGAATTTTT-AAAAATTGATTTAA
* *
6719370 TGGT-GATTAAATGATAATATTTGGA-GAATTT
63 T-ATAAATTAAATGATAATATTT-GATGAATTT
6719401 GTATGTTTAA
Statistics
Matches: 215, Mismatches: 32, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
163 39 0.18
164 25 0.12
165 55 0.26
166 89 0.41
167 7 0.03
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (165 bp):
AGAAGTTTAAAGAAAAAATTCAAAACTCATGAAAACGAATGAATTTTTAAAAATTGATTTAATAT
AAATTAAATGATAATATTTGATGAATTTTAAAAATTAAAAATCGAAGAAAATCCTCCAGAAAAAT
TTACGGAGAAAAAAGCACCATATTTAGGAAATAAT
Found at i:6720600 original size:84 final size:84
Alignment explanation
Indices: 6720291--6720889 Score: 378
Period size: 84 Copynumber: 7.2 Consensus size: 84
6720281 ACGTGAAAAA
* * * * * *
6720291 AAAGATGAGGAAGTTTCT-GGGTCTGAGCTGACGGGCAGACGATTGATAAAGAAAGTCTCTCGAG
1 AAAGATGAAGAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAAG-AAGTCTCTCGAG
* * *
6720355 ACTGAA-CCAACGGGTAGACG
65 TCT-AAGCCGACGGGCAGACG
** * * ** * * * *
6720375 ATGGATGAAGGAGTCTCTCGAGTCTGAGCTGATAGGCAGACGATTGATAAAGGAAGTCTCTTGGG
1 AAAGATGAAGAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAA-GAAGTCTCTCGAG
* ** * *
6720440 TTTAAATCGATGGGCAGATG
65 TCTAAGCCGACGGGCAGACG
* ** ** *
6720460 AAAGATGAAGAAGTCTCTC-AGGTCTAAGCCGACGGGCAGATGAAAGAT-GGGAAAGTCTCCCGA
1 AAAGATGAAGAAGTCTCTCGA-GTCTAAGCTGACGGGCAGATGATGGATAAAG-AAGTCTCTCGA
* *
6720523 GTCTAAGCCGACGGGTAGAGG
64 GTCTAAGCCGACGGGCAGACG
* * *
6720544 AAAGATGAAAAAATCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAAGAAGTCTCTCGGGT
1 AAAGATGAAGAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAAGAAGTCTCTCGAGT
* *
6720609 CTAAGCCGATGGGCAGTCG
66 CTAAGCCGACGGGCAGACG
** * * ** * * *
6720628 ATGGATGAAGAAGTCTCTCGGGTCTAAGCCGATAGGCAGATGATGGATGAAGAAATCTCTCGCGT
1 AAAGATGAAGAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAAGAAGTCTCTCGAGT
* ** * *
6720693 CTAAGCTGATAGGCAAATG
66 CTAAGCCGACGGGCAGACG
* * * * ** * ** * * *
6720712 AAAGATGAGGAAGCCTCTCGGGTTTAAGAC-GATAGGTAGATGAAAGATAAGGAAGTCTCTAGGG
1 AAAGATGAAGAAGTCTCTCGAGTCTAAG-CTGACGGGCAGATGATGGATAAAGAAGTCTCTCGAG
**
6720776 TCTAAGCTAACGGG-A-A-G
65 TCTAAGCCGACGGGCAGACG
* ** * ** * *
6720793 -AAGA--AA-AAGTCTCCCGAGTCTAAGCTGATAGGCAAATGAAAGA-AGAAAAAGTCTCTCGGG
1 AAAGATGAAGAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATA-AAGAAGTCTCTCGAG
*
6720853 TTTAAGCCGACGGGCAGACG
65 TCTAAGCCGACGGGCAGACG
6720873 AAAGATGAAGAAGTCTC
1 AAAGATGAAGAAGTCTC
6720890 CTGGGTCAAA
Statistics
Matches: 402, Mismatches: 96, Indels: 34
0.76 0.18 0.06
Matches are distributed among these distances:
76 2 0.00
77 52 0.13
78 2 0.00
79 1 0.00
80 5 0.01
81 5 0.01
82 1 0.00
83 4 0.01
84 241 0.60
85 88 0.22
86 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (84 bp):
AAAGATGAAGAAGTCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAAGAAGTCTCTCGAGT
CTAAGCCGACGGGCAGACG
Found at i:6720604 original size:126 final size:126
Alignment explanation
Indices: 6720451--6720890 Score: 355
Period size: 126 Copynumber: 3.5 Consensus size: 126
6720441 TTAAATCGAT
* *
6720451 GGGCAGATGAAAGATGAAGAAGTCTCTCAGGTCTAAGCCGACGGGCAGAT-GAAAGATG-GGAAA
1 GGGCAGATGAAAGATAAAGAAGTCTCTCAGGTCTAAGCCGACGGGCAG-TCGAAAGATGAAG-AA
* *
6720514 GTCTCCCGAGTCTAAGCCGACGGGTAGAGGAAAGATGAAAAAATCTCTCGAGTCTAAGCTGAC
64 GTCTCCCGAGTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAATCTCTCGAGTCTAAGCTGAC
** * * **
6720577 GGGCAGATGATGGATAAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGTCGATGGATGAAGAAGT
1 GGGCAGATGAAAGATAAAGAAGTCTCTCAGGTCTAAGCCGACGGGCAGTCGAAAGATGAAGAAGT
* * * * ** * * *
6720642 CTCTCGGGTCTAAGCCGATAGGCAGATGATGGATGAAGAAATCTCTCGCGTCTAAGCTGAT
66 CTCCCGAGTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAATCTCTCGAGTCTAAGCTGAC
* * * * * * * * ** *
6720703 AGGCAAATGAAAGATGAGGAAGCCTCTCGGGTTTAAGACGATAGGTAGAT-GAAAGAT-AAGGAA
1 GGGCAGATGAAAGATAAAGAAGTCTCTCAGGTCTAAGCCGACGGGCAG-TCGAAAGATGAA-GAA
** * * * * * *
6720766 GTCTCTAGGGTCTAAG-CTA-A--C-G-GG-AAGAAGAAAAAGTCTCCCGAGTCTAAGCTGAT
64 GTCTCCCGAGTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAATCTCTCGAGTCTAAGCTGAC
* * * * * *
6720822 AGGCAAATGAAAGA-AGAAAAAGTCTCTCGGGTTTAAGCCGACGGGCAGACGAAAGATGAAGAAG
1 GGGCAGATGAAAGATA-AAGAAGTCTCTCAGGTCTAAGCCGACGGGCAGTCGAAAGATGAAGAAG
6720886 TCTCC
65 TCTCC
6720891 TGGGTCAAAG
Statistics
Matches: 255, Mismatches: 52, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
119 79 0.31
120 3 0.01
121 1 0.00
122 1 0.00
124 1 0.00
125 5 0.02
126 163 0.64
127 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.19
Consensus pattern (126 bp):
GGGCAGATGAAAGATAAAGAAGTCTCTCAGGTCTAAGCCGACGGGCAGTCGAAAGATGAAGAAGT
CTCCCGAGTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAATCTCTCGAGTCTAAGCTGAC
Found at i:6720704 original size:42 final size:42
Alignment explanation
Indices: 6720323--6720889 Score: 303
Period size: 42 Copynumber: 13.6 Consensus size: 42
6720313 CTGAGCTGAC
* * * * * *
6720323 GGGCAGACGATTGATAAAGAAAGTCTCTCGAGACTGAA-CCAAC
1 GGGCAGATGATGGATGAAG-AAGTCTCTCGAGTCT-AAGCCGAT
* * * * *
6720366 GGGTAGACGATGGATGAAGGAGTCTCTCGAGTCTGAGCTGAT
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* * * * * * * **
6720408 AGGCAGACGATTGATAAAGGAAGTCTCTTGGGTTTAAATCGAT
1 GGGCAGATGATGGATGAA-GAAGTCTCTCGAGTCTAAGCCGAT
** *
6720451 GGGCAGATGAAAGATGAAGAAGTCTCTC-AGGTCTAAGCCGAC
1 GGGCAGATGATGGATGAAGAAGTCTCTCGA-GTCTAAGCCGAT
** * * *
6720493 GGGCAGATGAAAGATG-GGAAAGTCTCCCGAGTCTAAGCCGAC
1 GGGCAGATGATGGATGAAG-AAGTCTCTCGAGTCTAAGCCGAT
* * ** * * * *
6720535 GGGTAGAGGAAAGATGAAAAAATCTCTCGAGTCTAAGCTGAC
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* *
6720577 GGGCAGATGATGGATAAAGAAGTCTCTCGGGTCTAAGCCGAT
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
*
6720619 GGGCAG-TCGATGGATGAAGAAGTCTCTCGGGTCTAAGCCGAT
1 GGGCAGAT-GATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* * * *
6720661 AGGCAGATGATGGATGAAGAAATCTCTCGCGTCTAAGCTGAT
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* * ** * * * * *
6720703 AGGCAAATGAAAGATGAGGAAGCCTCTCGGGTTTAAGACGAT
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* * ** * * ** *
6720745 AGGTAGATGAAAGAT-AAGGAAGTCTCTAGGGTCTAAGCTAAC
1 GGGCAGATGATGGATGAA-GAAGTCTCTCGAGTCTAAGCCGAT
* * *
6720787 GGG-A-A-GA---A-GAAAAAGTCTCCCGAGTCTAAGCTGAT
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* * ** * * * * *
6720822 AGGCAAATGAAAGAAGAAAAAGTCTCTCGGGTTTAAGCCGAC
1 GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
* **
6720864 GGGCAGACGAAAGATGAAGAAGTCTC
1 GGGCAGATGATGGATGAAGAAGTCTC
6720890 CTGGGTCAAA
Statistics
Matches: 413, Mismatches: 94, Indels: 35
0.76 0.17 0.06
Matches are distributed among these distances:
35 20 0.05
36 4 0.01
37 1 0.00
38 2 0.00
39 2 0.00
40 1 0.00
41 6 0.01
42 330 0.80
43 47 0.11
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (42 bp):
GGGCAGATGATGGATGAAGAAGTCTCTCGAGTCTAAGCCGAT
Found at i:6720831 original size:119 final size:119
Alignment explanation
Indices: 6720691--6720905 Score: 308
Period size: 119 Copynumber: 1.8 Consensus size: 119
6720681 AATCTCTCGC
* ** * * *
6720691 GTCTAAGCTGATAGGCAAATGAAAGATGAGGAAGCCTCTCGGGTTTAAGACGATAGGTAGATGAA
1 GTCTAAGCTGATAGGCAAATGAAAGAAGAAAAAGCCTCTCGGGTTTAAGACGACAGGCAGACGAA
*
6720756 AGAT-AAGGAAGTCT-CTAGGGTCTAAGCTAACGGGAAGAAGAAAAAGTCTCCCGA
66 AGATGAA-GAAGTCTCCT-GGGTCAAAGCTAACGGGAAGAAGAAAAAGTCTCCCGA
* * *
6720810 GTCTAAGCTGATAGGCAAATGAAAGAAGAAAAAGTCTCTCGGGTTTAAGCCGACGGGCAGACGAA
1 GTCTAAGCTGATAGGCAAATGAAAGAAGAAAAAGCCTCTCGGGTTTAAGACGACAGGCAGACGAA
6720875 AGATGAAGAAGTCTCCTGGGTCAAAGCTAAC
66 AGATGAAGAAGTCTCCTGGGTCAAAGCTAAC
6720906 AGGCAGGCGA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
119 80 0.95
120 4 0.05
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.19
Consensus pattern (119 bp):
GTCTAAGCTGATAGGCAAATGAAAGAAGAAAAAGCCTCTCGGGTTTAAGACGACAGGCAGACGAA
AGATGAAGAAGTCTCCTGGGTCAAAGCTAACGGGAAGAAGAAAAAGTCTCCCGA
Found at i:6720940 original size:42 final size:42
Alignment explanation
Indices: 6720865--6720944 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
6720855 TAAGCCGACG
* ***
6720865 GGCAGACGAAAGATGAAGAAGTCTCCTGGGTCAAAGCTAACA
1 GGCAGACGAAAAATGAAGAAGTCTCCCCAGTCAAAGCTAACA
*
6720907 GGCAGGCGAAAAATGAAGAAGTCTCCCCAGTCAAAGCT
1 GGCAGACGAAAAATGAAGAAGTCTCCCCAGTCAAAGCT
6720945 GATGAGAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.38, C:0.21, G:0.28, T:0.14
Consensus pattern (42 bp):
GGCAGACGAAAAATGAAGAAGTCTCCCCAGTCAAAGCTAACA
Found at i:6721000 original size:245 final size:245
Alignment explanation
Indices: 6720545--6721001 Score: 508
Period size: 245 Copynumber: 1.9 Consensus size: 245
6720535 GGGTAGAGGA
* * * * ** *
6720545 AAGATGAAAAAATCTCTCGAGTCTAAGCTGACGGGCAGATGATGGATAAAGAAGTCTCTCGGGTC
1 AAGAAGAAAAAATCTCCCGAGTCTAAGCTGACAGGCAAATGAAAGATAAAAAAGTCTCTCGGGTC
* * ** * * * * ***
6720610 TAAGCCGATGGGCAGTCGATGGATGAAGAAGTCTCTCGGGTCTAAGCCGATAGGCAGATGATGGA
66 TAAGCCGACGGGCAGACGAAAGATGAAGAAGTCTCTCGGGTCAAAGCCAACAGGCAGACGAAAAA
* * * ** * * * *
6720675 TGAAGAAATCTCTCGCGTCTAAGCTGATAGGCAAATGAAAGATGAGGAAGCCTCTCGGGTTTAAG
131 TGAAGAAATCTCTCCCGTCAAAGCTGATAGGAAAACAAAAGATGAAGAAGCCTCCCAGGTTAAAG
*
6720740 ACGATAGGTAGATGAAAGATAAGGAAGTCTCTAGGGTCTAAGCTAACGGG
196 ACGATAGGCAGATGAAAGATAAGGAAGTCTCTAGGGTCTAAGCTAACGGG
* *
6720790 AAGAAGAAAAAGTCTCCCGAGTCTAAGCTGATAGGCAAATGAAAGA-AGAAAAAGTCTCTCGGGT
1 AAGAAGAAAAAATCTCCCGAGTCTAAGCTGACAGGCAAATGAAAGATA-AAAAAGTCTCTCGGGT
* * *
6720854 TTAAGCCGACGGGCAGACGAAAGATGAAGAAGTCTC-CTGGGTCAAAGCTAACAGGCAGGCGAAA
65 CTAAGCCGACGGGCAGACGAAAGATGAAGAAGTCTCTC-GGGTCAAAGCCAACAGGCAGACGAAA
* * *
6720918 AATGAAGAAGTCTC-CCCAGTCAAAGCTGAT-GAGAAAACAAAAGGTGAAGAAGTCTCCCAGGTT
129 AATGAAGAAATCTCTCCC-GTCAAAGCTGATAG-GAAAACAAAAGATGAAGAAGCCTCCCAGGTT
* *
6720981 AAAGCCGATTGGCAGATGAAA
192 AAAGACGATAGGCAGATGAAA
6721002 AATGAAAAAG
Statistics
Matches: 170, Mismatches: 38, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
244 5 0.03
245 165 0.97
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.19
Consensus pattern (245 bp):
AAGAAGAAAAAATCTCCCGAGTCTAAGCTGACAGGCAAATGAAAGATAAAAAAGTCTCTCGGGTC
TAAGCCGACGGGCAGACGAAAGATGAAGAAGTCTCTCGGGTCAAAGCCAACAGGCAGACGAAAAA
TGAAGAAATCTCTCCCGTCAAAGCTGATAGGAAAACAAAAGATGAAGAAGCCTCCCAGGTTAAAG
ACGATAGGCAGATGAAAGATAAGGAAGTCTCTAGGGTCTAAGCTAACGGG
Found at i:6721236 original size:44 final size:44
Alignment explanation
Indices: 6721184--6722000 Score: 289
Period size: 44 Copynumber: 18.6 Consensus size: 44
6721174 GAAGGAGGCG
* *
6721184 AATTTGACCAGGGTGGTAACCATATGTCAAATCGAAATGAAAAA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * ***
6721228 AATCTGACCAGGGTGGTAACCATATGTCAGA-CAAGAAGGAGGCA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAA-AATGAAAAA
* * * * ***
6721272 AATTTGACGAGGGTAGTTACCATACCTCAAATTGGAATGAAAAA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * **
6721316 AATCTGACTA-AGTGGTAACCATACGTCAGAA--AAAAAGAAACT
1 AATTTGACCAGGGTGGTAACCATACGTCA-AATCAAAATGAAAAA
* * * *
6721358 GATTTGACCAGGGTGTTAACCATACATCAAATCAAAATGAAAAG
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * ** ***
6721402 AATCTGACTAGGGTGGTGACCATACGTCAGAT-AGGGATGAGGTA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCA-AAATGAAAAA
* * * * *
6721446 GATTTGACTATGGTGGTAACCATACGTCAAATCAGAATGAAAAG
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * **
6721490 AATCTGACCAGGGTGGTAATCATACGTCAGAT-AAGAAGGAAACT
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAA-AATGAAAAA
* ** * *
6721534 GATTTGATGAGGGTGGTAACCATACGTCAAATCGAAATGAAAAG
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * ** * ***
6721578 AATTTGACTAGAGTGGTAACCATATGTCAAA-CAGGGAGGAGGCA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCA-AAATGAAAAA
* * * * * * **
6721622 GATTT-ATCTAGGGTGATAACCATACGTTAGA-CAAGGA-GAAGGCA
1 AATTTGA-CCAGGGTGGTAACCATACGTCAAATCAA-AATGAA-AAA
* * * * *** *
6721666 GATTTGACCAAGGTGGTAACCATGCGTCTAATTGGAATGAAAAG
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * * * ****
6721710 AATCTGACCAAGGTAGTAACCTTAC-TTAAGAT-AAGAAGGAGGCG
1 AATTTGACCAGGGTGGTAACCATACGTCAA-ATCAA-AATGAAAAA
* * *
6721754 AATTTGACTAGGGTGGTAACCATATGTCAAATCGAAATG-AAAA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * * * **
6721797 GATTCTAACC-GAGGTGGTAATCGTACGTCAGAT-AGGAGA-GAAGCA
1 AATT-TGACCAG-GGTGGTAACCATACGTCAAATCA--AAATGAAAAA
* * *** *
6721842 GATTTGACCAGGGTGGTAACCATACGTTAAATTGGAATGAAAAG
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * * * *** ***
6721886 AATCTAACTATGGTGGTAACCATATGTCAAATGGGAATGAGGCA
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* * * *** *
6721930 GATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAG
1 AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
* *
6721974 AATTTGACCAGGGTAGTAACCTTACGT
1 AATTTGACCAGGGTGGTAACCATACGT
6722001 AAAACAGGAA
Statistics
Matches: 549, Mismatches: 195, Indels: 58
0.68 0.24 0.07
Matches are distributed among these distances:
42 15 0.03
43 44 0.08
44 471 0.86
45 19 0.03
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (44 bp):
AATTTGACCAGGGTGGTAACCATACGTCAAATCAAAATGAAAAA
Found at i:6721268 original size:88 final size:88
Alignment explanation
Indices: 6721170--6721648 Score: 452
Period size: 88 Copynumber: 5.5 Consensus size: 88
6721160 CATATATCAA
* *
6721170 ACAAGAAGGAGGCGAATTTGACCAGGGTGGTAACCATATGTCAAATCGAAATGAAAAAAATCTGA
1 ACAAGAAGGAGGCGAATTTGACCAGGGTGGTAACCATACGTCAAATCGAAATGAAAAGAATCTGA
*
6721235 CCAGGGTGGTAACCATATGTCAG
66 CCAGGGTGGTAACCATACGTCAG
* * * * * * * *
6721258 ACAAGAAGGAGGCAAATTTGACGAGGGTAGTTACCATACCTCAAATTGGAATGAAAAAAATCTGA
1 ACAAGAAGGAGGCGAATTTGACCAGGGTGGTAACCATACGTCAAATCGAAATGAAAAGAATCTGA
* *
6721323 CTA-AGTGGTAACCATACGTCAG
66 CCAGGGTGGTAACCATACGTCAG
* * ** * * *
6721345 A-AAAAAAGAAACTG-ATTTGACCAGGGTGTTAACCATACATCAAATCAAAATGAAAAGAATCTG
1 ACAAGAAGGAGGC-GAATTTGACCAGGGTGGTAACCATACGTCAAATCGAAATGAAAAGAATCTG
* *
6721408 ACTAGGGTGGTGACCATACGTCAG
65 ACCAGGGTGGTAACCATACGTCAG
* * * * * * *
6721432 ATAGGGATGAGG-TAGATTTGACTATGGTGGTAACCATACGTCAAATC-AGAATGAAAAGAATCT
1 ACAAGAAGGAGGCGA-ATTTGACCAGGGTGGTAACCATACGTCAAATCGA-AATGAAAAGAATCT
*
6721495 GACCAGGGTGGTAATCATACGTCAG
64 GACCAGGGTGGTAACCATACGTCAG
* ** ** *
6721520 ATAAGAAGGAAACTG-ATTTGATGAGGGTGGTAACCATACGTCAAATCGAAATGAAAAGAATTTG
1 ACAAGAAGGAGGC-GAATTTGACCAGGGTGGTAACCATACGTCAAATCGAAATGAAAAGAATCTG
* * * *
6721584 ACTAGAGTGGTAACCATATGTCAA
65 ACCAGGGTGGTAACCATACGTCAG
* * * *
6721608 ACAGGGAGGAGGC-AGATTT-ATCTAGGGTGATAACCATACGT
1 ACAAGAAGGAGGCGA-ATTTGA-CCAGGGTGGTAACCATACGT
6721649 TAGACAAGGA
Statistics
Matches: 315, Mismatches: 64, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
86 51 0.16
87 38 0.12
88 225 0.71
89 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (88 bp):
ACAAGAAGGAGGCGAATTTGACCAGGGTGGTAACCATACGTCAAATCGAAATGAAAAGAATCTGA
CCAGGGTGGTAACCATACGTCAG
Found at i:6721783 original size:176 final size:173
Alignment explanation
Indices: 6721577--6722327 Score: 552
Period size: 176 Copynumber: 4.2 Consensus size: 173
6721567 GAAATGAAAA
* * * **
6721577 GAATTTGACTAGAGTGGTAACCATATGTCAAACAGGGAGGAGGCAGATTTATCTAGGGTGATAAC
1 GAATTTGACTAGGGTGGTAACCATATGTCAAAC-GGAATGA-AAAGATTTA-C-AGGGTGATAAC
* *
6721642 CATACGTTAGACAAGGAGA-AGGCAGATTTGACCAAGGTGGTAACCATGCGTCTAATTGGAATGA
62 CATACGTAAGACAAGGAGAGAGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGA
* * *
6721706 AAAGAATCTGACCAAGGTAGTAACCTTACTTAAGATAAGAAGGAGGC
127 AAAGAATCTAACTAAGGTAGTAACCTTACTTAAGATAGGAAGGAGGC
* * * *
6721753 GAATTTGACTAGGGTGGTAACCATATGTCAAATCGAAATGAAAAGATTCTAACCGAGGTGGTAAT
1 GAATTTGACTAGGGTGGTAACCATATGTCAAA-CGGAATGAAAAGATT-T-ACAG-GGTGATAAC
* * * * *
6721818 CGTACGTCAGA-TAGGAGAGAAGCAGATTTGACCAGGGTGGTAACCATACGT-TAAATTGGAATG
62 CATACGTAAGACAAGGAGAGAGGCAGATTTGACCAAGGTGGTAACCATACGTCT-AATTGGAATG
* * * * *
6721881 AAAAGAATCTAACTATGGTGGTAACCATA-TGTCAA-ATGGGAATGAGGC
126 AAAAGAATCTAACTAAGGTAGTAACCTTACT-T-AAGATAGGAAGGAGGC
* * * **
6721929 -AGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATTTGACCAGGGT-AGTA
1 GA-ATTTGACTAGGGTGGTAACCATATGTC-AAACGGAATGAAAAG-ATTT-A-CAGGGTGA-TA
* * *
6721992 ACCTTACGTAAAACAGGAAGGAGTCAGATGGGAATGAGGCAAATTTGACCAAGGTGGTAACCATA
60 ACCATACGTAAGAC----A--AG---GA---G-A-GAGGCAGATTTGACCAAGGTGGTAACCATA
* * *
6722057 CGTCTAATTGGAATGAAAAGAATCTAACTAGGGTAGTAACCTTACGTAAGACAGGAAGGAGGC
111 CGTCTAATTGGAATGAAAAGAATCTAACTAAGGTAGTAACCTTACTTAAGATAGGAAGGAGGC
* * ** * * *
6722120 GAATTTGACTAGGGTGGTAACCATTTATCAAATCAAAATGAAAAGATTCTAACCGAGGTGGTAAT
1 GAATTTGACTAGGGTGGTAACCATATGTCAAA-CGGAATGAAAAGATT-T-ACAG-GGTGATAAC
* * * * * * *
6722185 CGTACGTCAGA-TAGGAGAGAAGCAGATTTGACTAGGGTGGTAACCATACGT-TAAATCGGAATG
62 CATACGTAAGACAAGGAGAGAGGCAGATTTGACCAAGGTGGTAACCATACGTCT-AATTGGAATG
* * * * * *
6722248 AAAAGAATCTAACTAGGGT-GCTAACCATACGTCAGATGGGAATGAGG-
126 AAAAGAATCTAACTAAGGTAG-TAACCTTACTTAAGATAGGAAGGAGGC
* * * *
6722295 TAGATTTGACCAAGGTGGTAACCATACGTCAAA
1 GA-ATTTGACTAGGGTGGTAACCATATGTCAAA
6722328 TCAAAATGAA
Statistics
Matches: 456, Mismatches: 80, Indels: 78
0.74 0.13 0.13
Matches are distributed among these distances:
175 18 0.04
176 280 0.61
177 12 0.03
178 1 0.00
181 2 0.00
183 2 0.00
184 2 0.00
186 2 0.00
189 1 0.00
190 10 0.02
191 124 0.27
192 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (173 bp):
GAATTTGACTAGGGTGGTAACCATATGTCAAACGGAATGAAAAGATTTACAGGGTGATAACCATA
CGTAAGACAAGGAGAGAGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAG
AATCTAACTAAGGTAGTAACCTTACTTAAGATAGGAAGGAGGC
Found at i:6721812 original size:132 final size:132
Alignment explanation
Indices: 6721665--6722000 Score: 367
Period size: 132 Copynumber: 2.5 Consensus size: 132
6721655 AGGAGAAGGC
* * * *
6721665 AGATTTGACCAAGGTGGTAACCATGCGTCTAATTGGAATGAAAAGAATCTGACCAAGGTAGTAAC
1 AGATTTAACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATTTGACCAGGGTAGTAAC
*** * *
6721730 CTTAC-TTAAGATAAGAAGGAGGCGAATTTGACTAGGGTGGTAACCATATGTCAAATCGAAATGA
66 CTTACGTTAA-ATAAGAAGGAAAAGAATCTAACTAGGGTGGTAACCATATGTCAAATCGAAATGA
6721794 -AA
130 GAA
* * * * * *
6721796 AGATTCTAACCGAGGTGGTAATCGTACGTC-AGATAGG-A-GAGAAGCAGATTTGACCAGGGTGG
1 AGATT-TAACCAAGGTGGTAACCATACGTCTA-ATTGGAATGAAAAG-A-ATTTGACCAGGGTAG
* ** * * * *
6721858 TAACCATACGTTAAATTGGAATGAAAAGAATCTAACTATGGTGGTAACCATATGTCAAATGGGAA
62 TAACCTTACGTTAAATAAGAAGGAAAAGAATCTAACTAGGGTGGTAACCATATGTCAAATCGAAA
**
6721923 TGAGGC
127 TGAGAA
*
6721929 AGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATTTGACCAGGGTAGTAAC
1 AGATTTAACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATTTGACCAGGGTAGTAAC
6721994 CTTACGT
66 CTTACGT
6722001 AAAACAGGAA
Statistics
Matches: 164, Mismatches: 32, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
130 5 0.03
131 8 0.05
132 134 0.82
133 12 0.07
134 5 0.03
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (132 bp):
AGATTTAACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATTTGACCAGGGTAGTAAC
CTTACGTTAAATAAGAAGGAAAAGAATCTAACTAGGGTGGTAACCATATGTCAAATCGAAATGAG
AA
Found at i:6722020 original size:88 final size:88
Alignment explanation
Indices: 6721661--6722020 Score: 368
Period size: 88 Copynumber: 4.1 Consensus size: 88
6721651 GACAAGGAGA
* * *
6721661 AGGCAGATTTGACCAAGGTGGTAACCATGCGTCTAATTGGAATGAAAAGAATCTGACCAAGGTAG
1 AGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATCTAACCAGGGTAG
* * *
6721726 TAACCTTACTTAAGATAAGAAGG
66 TAACCTTACGTAAAATAGGAAGG
* * * * * * *
6721749 AGGC-GAATTTGACTAGGGTGGTAACCATATGTCAAATCGAAATGAAAAGATTCTAACC-GAGGT
1 AGGCAG-ATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATCTAACCAG-GGT
* * * * *
6721812 GGTAATCGTACGTCAGATAGG-AGAG
64 AGTAACCTTACGTAAAATAGGAAG-G
* * * * *
6721837 AAGCAGATTTGACCAGGGTGGTAACCATACGT-TAAATTGGAATGAAAAGAATCTAACTATGGTG
1 AGGCAGATTTGACCAAGGTGGTAACCATACGTCT-AATTGGAATGAAAAGAATCTAACCAGGGTA
* * * * *
6721901 GTAACCATATGTCAAATGGGAATG
65 GTAACCTTACGTAAAATAGGAAGG
* *
6721925 AGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATTTGACCAGGGTAG
1 AGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATCTAACCAGGGTAG
*
6721990 TAACCTTACGTAAAACAGGAAGG
66 TAACCTTACGTAAAATAGGAAGG
*
6722013 AGTCAGAT
1 AGGCAGAT
6722021 GGGAATGAGG
Statistics
Matches: 219, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
87 3 0.01
88 213 0.97
89 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (88 bp):
AGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAATCTAACCAGGGTAG
TAACCTTACGTAAAATAGGAAGG
Found at i:6722095 original size:103 final size:103
Alignment explanation
Indices: 6721911--6722117 Score: 360
Period size: 103 Copynumber: 2.0 Consensus size: 103
6721901 GTAACCATAT
*
6721911 GTCAAATGGGAATGAGGCAGATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAA
1 GTCAAATGGGAATGAGGCAAATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAA
* *
6721976 TTTGACCAGGGTAGTAACCTTACGTAAAACAGGAAGGA
66 TCTAACCAGGGTAGTAACCTTACGTAAAACAGGAAGGA
*
6722014 GTCAGATGGGAATGAGGCAAATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAA
1 GTCAAATGGGAATGAGGCAAATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAA
* *
6722079 TCTAACTAGGGTAGTAACCTTACGTAAGACAGGAAGGA
66 TCTAACCAGGGTAGTAACCTTACGTAAAACAGGAAGGA
6722117 G
1 G
6722118 GCGAATTTGA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (103 bp):
GTCAAATGGGAATGAGGCAAATTTGACCAAGGTGGTAACCATACGTCTAATTGGAATGAAAAGAA
TCTAACCAGGGTAGTAACCTTACGTAAAACAGGAAGGA
Found at i:6722191 original size:88 final size:88
Alignment explanation
Indices: 6722068--6722345 Score: 233
Period size: 88 Copynumber: 3.2 Consensus size: 88
6722058 GTCTAATTGG
* * *
6722068 AATGAAAAGAATCTAACTAGGGTAGTAACCTTACGTAAGACAGGA-AGGAGGC-GAATTTGACTA
1 AATGAAAAGAATCTAACGAGGGTAGTAACCGTACGTAAGACAGGAGA-GAAGCAG-ATTTGACTA
6722131 GGGTGGTAACCATTTATCAAATCAA
64 GGGTGGTAACCATTTATCAAATCAA
* * * * *
6722156 AATGAAAAGATTCTAACCGA-GGTGGTAATCGTACGTCAGATAGGAGAGAAGCAGATTTGACTAG
1 AATGAAAAGAATCTAA-CGAGGGTAGTAACCGTACGTAAGACAGGAGAGAAGCAGATTTGACTAG
*** * **
6722220 GGTGGTAACCATACGTTAAATCGG
65 GGTGGTAACCATTTATCAAATCAA
* * * ** * * *
6722244 AATGAAAAGAATCTAACTAGGGT-GCTAACCATACGTCAGATGGGA-ATGAGGTAGATTTGACCA
1 AATGAAAAGAATCTAACGAGGGTAG-TAACCGTACGTAAGACAGGAGA-GAAGCAGATTTGACTA
* ***
6722307 AGGTGGTAACCATACGTCAAATCAA
64 GGGTGGTAACCATTTATCAAATCAA
*
6722332 AATGAAAATAATCT
1 AATGAAAAGAATCT
6722346 GATTAGTGTG
Statistics
Matches: 157, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
87 4 0.03
88 149 0.95
89 4 0.03
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (88 bp):
AATGAAAAGAATCTAACGAGGGTAGTAACCGTACGTAAGACAGGAGAGAAGCAGATTTGACTAGG
GTGGTAACCATTTATCAAATCAA
Found at i:6722235 original size:44 final size:44
Alignment explanation
Indices: 6722014--6722325 Score: 165
Period size: 44 Copynumber: 7.1 Consensus size: 44
6722004 ACAGGAAGGA
* * * *
6722014 GTCAGATGGGAATGAGGCAA-ATTTGACCAAGGTGGTAACCATAC
1 GTCAGATAGGAATGAAG-AAGATTTGACTAGGGTGGTAACCATAC
* * * * *
6722058 GTCTA-ATTGGAATGAA-AAGAATCTAACTAGGGTAGTAACCTTAC
1 GTC-AGATAGGAATGAAGAAG-ATTTGACTAGGGTGGTAACCATAC
* * * ** **
6722102 GTAAGACAGGAA-GGAGGCGAATTTGACTAGGGTGGTAACCATTT
1 GTCAGATAGGAATGAAGAAG-ATTTGACTAGGGTGGTAACCATAC
* * * * * * *
6722146 ATCAAATCA-AAATGAA-AAGATTCTAAC-CGAGGTGGTAATCGTAC
1 GTCAGAT-AGGAATGAAGAAGATT-TGACTAG-GGTGGTAACCATAC
*
6722190 GTCAGATAGGAGA-GAAGCAGATTTGACTAGGGTGGTAACCATAC
1 GTCAGATAGGA-ATGAAGAAGATTTGACTAGGGTGGTAACCATAC
* * * * * *
6722234 GTTAAATCGGAATGAA-AAGAATCTAACTAGGGTGCTAACCATAC
1 GTCAGATAGGAATGAAGAAG-ATTTGACTAGGGTGGTAACCATAC
* * * * *
6722278 GTCAGATGGGAATGAGGTAGATTTGACCAAGGTGGTAACCATAC
1 GTCAGATAGGAATGAAGAAGATTTGACTAGGGTGGTAACCATAC
6722322 GTCA
1 GTCA
6722326 AATCAAAATG
Statistics
Matches: 193, Mismatches: 59, Indels: 32
0.68 0.21 0.11
Matches are distributed among these distances:
42 2 0.01
43 11 0.06
44 167 0.87
45 13 0.07
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (44 bp):
GTCAGATAGGAATGAAGAAGATTTGACTAGGGTGGTAACCATAC
Found at i:6726575 original size:52 final size:52
Alignment explanation
Indices: 6726514--6726834 Score: 222
Period size: 52 Copynumber: 6.1 Consensus size: 52
6726504 GATATCAGGT
* * * *
6726514 TTAACGATGACAAAGGTGCCAATGTGATGATTCTAGGCCAGCAACATTGGAC
1 TTAAAGATGACAAAGGTGCCAATGTGCTGATTCAAGGCCAACAACATTGGAC
* * * * * * * *
6726566 TTGAAGATGAGAAGAATAATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGC
1 -T-----T-A-AAG-ATGACAAAGGTGCCAATGTGCTGATTCAAGGCCAACAACATTGGAC
** * * * **
6726627 TTAAAGATG-TGAAGAATGCCAATGTGCTGA-TCTACGGCCAACGACATCAGAC
1 TTAAAGATGACAAAG-GTGCCAATGTGCTGATTC-AAGGCCAACAACATTGGAC
** * * * * * *
6726679 TCGAAGACGA-GAAGAATGCCAATGTGCTGATTCAAGGCTAACAATATTGGGC
1 TTAAAGATGACAAAG-GTGCCAATGTGCTGATTCAAGGCCAACAACATTGGAC
*
6726731 TTAAAGATGACAAAGGTGCTAATGTGCTGATTCAAGGCCAACAACATTGGAC
1 TTAAAGATGACAAAGGTGCCAATGTGCTGATTCAAGGCCAACAACATTGGAC
* *
6726783 TTAAAGA--A-AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAATATTGGAC
1 TTAAAGATGACAAAGGTGCCAATGTGCTGATTCAAGGCCAACAACATTGGAC
6726832 TTA
1 TTA
6726835 GAAAGTGATG
Statistics
Matches: 212, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
49 41 0.19
50 1 0.00
51 6 0.03
52 111 0.52
53 9 0.04
54 1 0.00
55 1 0.00
58 1 0.00
59 1 0.00
60 3 0.01
61 37 0.17
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (52 bp):
TTAAAGATGACAAAGGTGCCAATGTGCTGATTCAAGGCCAACAACATTGGAC
Found at i:6726624 original size:61 final size:61
Alignment explanation
Indices: 6726525--6726643 Score: 157
Period size: 61 Copynumber: 2.0 Consensus size: 61
6726515 TAACGATGAC
* * *
6726525 AAAGGTGCCAATGTGATGATTCTAGGCCAGCAACATTGGACTTGAAGATGAGAAGAATAAT
1 AAAGGTGCCAATATGATGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAAGAATAAT
* * * * * *
6726586 AAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGATGTGAAGAAT
1 AAAGGTGCCAATATGATGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAAGAAT
6726644 GCCAATGTGC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (61 bp):
AAAGGTGCCAATATGATGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAAGAATAAT
Found at i:6726647 original size:113 final size:112
Alignment explanation
Indices: 6726446--6726789 Score: 348
Period size: 113 Copynumber: 3.1 Consensus size: 112
6726436 GGCTTGTAAT
* * * * * **
6726446 ATTGGACTTAAAGATGTGAAGAATGATAAAGGTGCCAATACGCTGGTTCACGGCCAGCGATATCA
1 ATTGGACTTAAAGATGAGAAGAAT-ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTG
* * * *
6726511 GGTTTAACGATGACAAAGGTGCCAATGTGATGATTCTAGGCCAGCAAC
65 GGCTTAAAGATGACAAAGGTGCCAATGTGCTGATTCTAGGCCAACAAC
*
6726559 ATTGGACTTGAAGATGAGAAGAATAATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTG
1 ATTGGACTTAAAGATGAGAAGAAT-ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTG
** * *
6726624 GGCTTAAAGATG-TGAAGAATGCCAATGTGCTGA-TCTACGGCCAACGAC
65 GGCTTAAAGATGACAAAG-GTGCCAATGTGCTGATTCTA-GGCCAACAAC
** ** * * * *
6726672 ATCAGACTCGAAGACGAGAAG------AA--TGCCAATGTGCTGATTCAAGGCTAACAATATTGG
1 ATTGGACTTAAAGATGAGAAGAATATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGG
* *
6726729 GCTTAAAGATGACAAAGGTGCTAATGTGCTGATTCAAGGCCAACAAC
66 GCTTAAAGATGACAAAGGTGCCAATGTGCTGATTCTAGGCCAACAAC
6726776 ATTGGACTTAAAGA
1 ATTGGACTTAAAGA
6726790 AAAAGGTGCC
Statistics
Matches: 193, Mismatches: 34, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
104 74 0.38
105 6 0.03
106 2 0.01
112 7 0.04
113 104 0.54
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (112 bp):
ATTGGACTTAAAGATGAGAAGAATATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGG
GCTTAAAGATGACAAAGGTGCCAATGTGCTGATTCTAGGCCAACAAC
Found at i:6726771 original size:104 final size:101
Alignment explanation
Indices: 6726586--6726834 Score: 277
Period size: 104 Copynumber: 2.4 Consensus size: 101
6726576 GAAGAATAAT
* * * **
6726586 AAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGATGTGAAGAATGCCAATG
1 AAAGATGCCAATGTGCTGATTCAAGGCTAGCAATATTGGGCTTAAAGATGCAAAGAATGCCAATG
* * *
6726651 TGCTGATCTACGGCCAACGACATCAGACTCGAAGACGA
66 TGCTGATCTAAGGCCAACAACATCAGACTCAAAGA--A
* * * *
6726689 GAAGAATGCCAATGTGCTGATTCAAGGCTAACAATATTGGGCTTAAAGATGACAAAG-GTGCTAA
1 AAAG-ATGCCAATGTGCTGATTCAAGGCTAGCAATATTGGGCTTAAAGATG-CAAAGAATGCCAA
** *
6726753 TGTGCTGAT-TCAAGGCCAACAACATTGGACTTAAAGAA
64 TGTGCTGATCT-AAGGCCAACAACATCAGACTCAAAGAA
* * *
6726791 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAATATTGGACTTA
1 AAAGATGCCAATGTGCTGATTCAAGGCTAGCAATATTGGGCTTA
6726835 GAAAGTGATG
Statistics
Matches: 123, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
101 36 0.29
102 4 0.03
103 4 0.03
104 76 0.62
105 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (101 bp):
AAAGATGCCAATGTGCTGATTCAAGGCTAGCAATATTGGGCTTAAAGATGCAAAGAATGCCAATG
TGCTGATCTAAGGCCAACAACATCAGACTCAAAGAA
Found at i:6726814 original size:49 final size:51
Alignment explanation
Indices: 6726695--6726834 Score: 212
Period size: 49 Copynumber: 2.8 Consensus size: 51
6726685 ACGAGAAGAA
* *
6726695 TGCCAATGTGCTGATTCAAGGCTAACAATATTGGGCTTAAAGATGACAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACAATATTGGACTTAAAGA-GACAAAGG
* *
6726747 TGCTAATGTGCTGATTCAAGGCCAACAACATTGGACTTAAAGA-A-AAAGG
1 TGCCAATGTGCTGATTCAAGGCCAACAATATTGGACTTAAAGAGACAAAGG
*
6726796 TGCCAATGTGCTGATTCAAGGCCAGCAATATTGGACTTA
1 TGCCAATGTGCTGATTCAAGGCCAACAATATTGGACTTA
6726835 GAAAGTGATG
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
49 41 0.51
50 1 0.01
52 39 0.48
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (51 bp):
TGCCAATGTGCTGATTCAAGGCCAACAATATTGGACTTAAAGAGACAAAGG
Found at i:6726946 original size:32 final size:33
Alignment explanation
Indices: 6726910--6726973 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
6726900 GATGCCACTA
*
6726910 ACTTGTGTGAGCTTTTGA-AAG-GGTTGCCACCG
1 ACTTGTGT-AGCTTTTAAGAAGAGGTTGCCACCG
*
6726942 ACTTGTGTAGGTTTTAAGAAGAGGTTGCCACC
1 ACTTGTGTAGCTTTTAAGAAGAGGTTGCCACC
6726974 AGTTTGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 7 0.25
32 11 0.39
33 10 0.36
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (33 bp):
ACTTGTGTAGCTTTTAAGAAGAGGTTGCCACCG
Found at i:6727220 original size:28 final size:27
Alignment explanation
Indices: 6727173--6727234 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 27
6727163 ACAGCAAGTA
* *
6727173 CCACTGATTGTGGATTTCGAAAAGATG
1 CCACTGATTATGGACTTCGAAAAGATG
* *
6727200 CCACTGATTTATGGACTTCGAAGAGGTG
1 CCACTGA-TTATGGACTTCGAAAAGATG
6727228 CCACTGA
1 CCACTGA
6727235 CTAGTGGGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 7 0.23
28 23 0.77
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (27 bp):
CCACTGATTATGGACTTCGAAAAGATG
Found at i:6727911 original size:13 final size:13
Alignment explanation
Indices: 6727893--6727917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6727883 TTTTGCAATT
6727893 TGTATCGATACAA
1 TGTATCGATACAA
6727906 TGTATCGATACA
1 TGTATCGATACA
6727918 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6739695 original size:15 final size:16
Alignment explanation
Indices: 6739675--6739704 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6739665 TTTGTCAAGC
6739675 CCACCAGTA-TTGGTT
1 CCACCAGTACTTGGTT
6739690 CCACCAGTACTTGGT
1 CCACCAGTACTTGGT
6739705 CGAGCTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (16 bp):
CCACCAGTACTTGGTT
Found at i:6741977 original size:25 final size:24
Alignment explanation
Indices: 6741931--6741978 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
6741921 CATCCTTCGT
*
6741931 AAAAAAAAAATCAACAACAAATAC
1 AAAAAAAAAATCAACAAAAAATAC
6741955 AAAAAAAAAA-CAAACAAGAAAATA
1 AAAAAAAAAATC-AACAA-AAAATA
6741979 GGGAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 15 0.71
25 5 0.24
ACGTcount: A:0.79, C:0.12, G:0.02, T:0.06
Consensus pattern (24 bp):
AAAAAAAAAATCAACAAAAAATAC
Found at i:6742260 original size:44 final size:44
Alignment explanation
Indices: 6742197--6742284 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
6742187 GCACTTAAAG
6742197 AGCATTCATGTCGCGGGTTGTCAGAGGCTTCTTTCGCCCAAAAA
1 AGCATTCATGTCGCGGGTTGTCAGAGGCTTCTTTCGCCCAAAAA
*
6742241 AGCATTCATGTCGCGGGTTGTCAGAGGCTTCTTTTGCCCAAAAA
1 AGCATTCATGTCGCGGGTTGTCAGAGGCTTCTTTCGCCCAAAAA
6742285 TCATTATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (44 bp):
AGCATTCATGTCGCGGGTTGTCAGAGGCTTCTTTCGCCCAAAAA
Found at i:6743406 original size:28 final size:28
Alignment explanation
Indices: 6743370--6743440 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
6743360 TGCTCAAAGC
6743370 CCAC-AGTCAATGGCACCTTTTCGAAGT
1 CCACAAGTCAATGGCACCTTTTCGAAGT
* * *
6743397 CCACAAGTCAGTGCCATCTTTTCGAAGT
1 CCACAAGTCAATGGCACCTTTTCGAAGT
6743425 CCACAA-TCAATGGCAC
1 CCACAAGTCAATGGCAC
6743441 TTGCTGTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
27 11 0.30
28 26 0.70
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (28 bp):
CCACAAGTCAATGGCACCTTTTCGAAGT
Found at i:6743655 original size:31 final size:31
Alignment explanation
Indices: 6743618--6744076 Score: 442
Period size: 32 Copynumber: 14.5 Consensus size: 31
6743608 GAAACCCTTC
*
6743618 TTCAAAGCCCACATAAGTCGGTGGCAACCCT
1 TTCAAAGCCCACACAAGTCGGTGGCAACCCT
* *
6743649 TTCAAAGCCCACACAAGTTGGGGGCAA-CCT
1 TTCAAAGCCCACACAAGTCGGTGGCAACCCT
* * * *
6743679 TTCTTAAAGCCCATAAAAGTTGGTGGCAACCTT
1 TTC--AAAGCCCACACAAGTCGGTGGCAACCCT
6743712 CTTCAAAGCCCACACAAGTCGGTGGCAACCCT
1 -TTCAAAGCCCACACAAGTCGGTGGCAACCCT
* *
6743744 TTTAAAGCCCACACAAG-CTGGTGACAACCCTT
1 TTCAAAGCCCACACAAGTC-GGTGGCAACCC-T
* * * *
6743776 TTTAAAGCCCACACAAATTGGTGGCAACCTT
1 TTCAAAGCCCACACAAGTCGGTGGCAACCCT
**
6743807 CTTCAAAGCCCACACAAGTTAGTGGCAACCCT
1 -TTCAAAGCCCACACAAGTCGGTGGCAACCCT
* *
6743839 TTCAAAGCCCACACAAG-CTGGAGGCAACCCC
1 TTCAAAGCCCACACAAGTC-GGTGGCAACCCT
* *
6743870 TTCAAAGCCCACACAAG-CTAGTGGCAATCCT
1 TTCAAAGCCCACACAAGTC-GGTGGCAACCCT
* * * *
6743901 TCTTAAAGCCCACATAAGTTGGTGGCAACCTT
1 T-TCAAAGCCCACACAAGTCGGTGGCAACCCT
* * *
6743933 CTTCAAAGCCCATACAAGTCGGTGGTAACCCC
1 -TTCAAAGCCCACACAAGTCGGTGGCAACCCT
* * *
6743965 TTCAAAGCCCACACAAGTTGATGGCAACCTT
1 TTCAAAGCCCACACAAGTCGGTGGCAACCCT
* **
6743996 TTCAAAGCCCATACAAG-CTAATGGCAACCCT
1 TTCAAAGCCCACACAAGTC-GGTGGCAACCCT
* * * *
6744027 TCTTAAAGTCCACACAAGTCGATGGCAATCCT
1 T-TCAAAGCCCACACAAGTCGGTGGCAACCCT
6744059 TTCAAAAGCCCACACAAG
1 TTC-AAAGCCCACACAAG
6744077 CTGATGGTAT
Statistics
Matches: 353, Mismatches: 59, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
30 7 0.02
31 158 0.45
32 181 0.51
33 4 0.01
34 3 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (31 bp):
TTCAAAGCCCACACAAGTCGGTGGCAACCCT
Found at i:6743865 original size:126 final size:126
Alignment explanation
Indices: 6743602--6744076 Score: 563
Period size: 126 Copynumber: 3.8 Consensus size: 126
6743592 TAATGTCCCT
* * * *
6743602 AGTGGA-GAAACCCTTCTTCAAAGCCCACATAAG-TCGGTGGCAACCCTT-TCAAAGCCCACACA
1 AGTGGAGGCAACCCTT-TTCAAAGCCCACACAAGCT-AGTGGCAACCCTTCTTAAAGCCCACACA
* * * *
6743664 AGTTGGGGGCAACCTTTCTT-AAAGCCCATAAAAGTTGGTGGCAACCTTCTTCAAAGCCCACACA
64 AGTTGGTGGCAACC-TTCTTCAAAGCCCACACAAGTTGGTGGCAACCCT-TTCAAAGCCCACACA
* * * *
6743728 AGTCGGTGGCAACCCTTTT-AAAGCCCACACAAGCTGGTGACAACCCTTTTTAAAGCCCACACAA
1 AGT-GGAGGCAACCCTTTTCAAAGCCCACACAAGCTAGTGGCAACCCTTCTTAAAGCCCACACAA
* *
6743792 ATTGGTGGCAACCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTTTCAAAGCCCACACA
65 GTTGGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTCAAAGCCCACACA
* * *
6743854 AGCTGGAGGCAACCC-CTTCAAAGCCCACACAAGCTAGTGGCAATCCTTCTTAAAGCCCACATAA
1 AG-TGGAGGCAACCCTTTTCAAAGCCCACACAAGCTAGTGGCAACCCTTCTTAAAGCCCACACAA
* * * *
6743918 GTTGGTGGCAACCTTCTTCAAAGCCCATACAAGTCGGTGGTAACCCCTTCAAAGCCCACACA
65 GTTGGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTCAAAGCCCACACA
* * * *
6743980 AGTTGATGGCAA-CCTTTTCAAAGCCCATACAAGCTAATGGCAACCCTTCTTAAAGTCCACACAA
1 AGTGGA-GGCAACCCTTTTCAAAGCCCACACAAGCTAGTGGCAACCCTTCTTAAAGCCCACACAA
* *
6744044 GTCGATGGCAATCC-T-TTCAAAAGCCCACACAAG
65 GTTGGTGGCAA-CCTTCTTC-AAAGCCCACACAAG
6744077 CTGATGGTAT
Statistics
Matches: 304, Mismatches: 34, Indels: 22
0.84 0.09 0.06
Matches are distributed among these distances:
125 10 0.03
126 229 0.75
127 57 0.19
128 8 0.03
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (126 bp):
AGTGGAGGCAACCCTTTTCAAAGCCCACACAAGCTAGTGGCAACCCTTCTTAAAGCCCACACAAG
TTGGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTCAAAGCCCACACA
Found at i:6744073 original size:95 final size:94
Alignment explanation
Indices: 6743613--6744083 Score: 515
Period size: 95 Copynumber: 5.0 Consensus size: 94
6743603 GTGGAGAAAC
* ** * * *
6743613 CCTTCTTCAAAGCCCACATAAGTCGGTGGCAACCCTTTCAAAGCCCACACAAGTTGGGGGCAA-C
1 CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTTTTAAAGCCCACACAAGTCGGTGGCAACC
* * *
6743677 CTTTCTTAAAGCCCATAAAAGTTGGTGGCAA
66 CTTTC--AAAGCCCACACAAGTTGATGGCAA
** *
6743708 CCTTCTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTAAAGCCCACACAAG-CTGGTGACAAC
1 CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTTTTAAAGCCCACACAAGTC-GGTGGCAAC
* * *
6743772 CCTTTTTAAAGCCCACACAAATTGGTGGCAA
65 CC-TTTCAAAGCCCACACAAGTTGATGGCAA
* *
6743803 CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTTTCAAAGCCCACACAAG-CTGGAGGCAAC
1 CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTTTTAAAGCCCACACAAGTC-GGTGGCAAC
* *
6743867 CCCTTCAAAGCCCACACAAGCT-AGTGGCAA
65 CCTTTCAAAGCCCACACAAGTTGA-TGGCAA
* * * *
6743897 TCCTTCTT-AAAGCCCACATAAGTTGGTGGCAA-CCTTCTTCAAAGCCCATACAAGTCGGTGGTA
1 -CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTT-TT-AAAGCCCACACAAGTCGGTGGCA
*
6743960 ACCCCTTCAAAGCCCACACAAGTTGATGGCAA
63 ACCCTTTCAAAGCCCACACAAGTTGATGGCAA
* * * * * *
6743992 CCTT-TTCAAAGCCCATACAAGCTAATGGCAACCCTTCTTAAAGTCCACACAAGTCGATGGCAAT
1 CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTT-TTAAAGCCCACACAAGTCGGTGGCAAC
*
6744056 CCTTTCAAAAGCCCACACAAGCTGATGG
65 CCTTTC-AAAGCCCACACAAGTTGATGG
6744084 TATCTCCTTT
Statistics
Matches: 326, Mismatches: 38, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
93 6 0.02
94 93 0.29
95 220 0.67
96 4 0.01
97 3 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (94 bp):
CCTTCTTCAAAGCCCACACAAGTTAGTGGCAACCCTTTTAAAGCCCACACAAGTCGGTGGCAACC
CTTTCAAAGCCCACACAAGTTGATGGCAA
Found at i:6744262 original size:52 final size:52
Alignment explanation
Indices: 6744179--6744638 Score: 358
Period size: 52 Copynumber: 8.8 Consensus size: 52
6744169 CAGCACAAGC
* *
6744179 CCAATATCGCTGGCCATGAATCAACATATTGGCACCCTTATCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTTAAGT
* * * *
6744231 CCAATGTTGCTGGCCTTGAATCAGCACATTGGCA-CC-T-TCTTCTTTCTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATC-TT-T-AAGT
* * **
6744283 CTAATATCGATGGCCTTGAATCAGCATATTGGCACATTTATCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTTAAGT
* * * * ** *
6744335 CCAATGTTGCTGGCCTTGAATCAGCACATTGGCACATTCTT-TTTTC-TCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC--CCTTATCATCTTTAAGT
* * * * * *
6744387 CCAATATCGCTAGCTTTGAATCAGCATATTAGCACCTTTATCATCTTCAAAT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTTAAGT
* * * ** *
6744439 CCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCTT-TTTTC-TCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--CTTATCATCTTTAAGT
* * * * * * * ** *
6744491 CTAATATAGTTAGCCTTAAATCAGCATATTAGCACCTTTGCCATCTTTAAGG
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTTAAGT
* * * * * * * *
6744543 CTAATGTCGCTAGCCTTGAGTCAGCAGATTGGCACCTTTGTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTTAAGT
***
6744595 CCAATATAATTGGCCTTGAATCAGCATATTGGCACCCTTATCAT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCAT
6744639 TCTTCTCATT
Statistics
Matches: 316, Mismatches: 78, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
49 4 0.01
50 7 0.02
51 8 0.03
52 279 0.88
53 7 0.02
54 7 0.02
55 4 0.01
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (52 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTTAAGT
Found at i:6744361 original size:104 final size:104
Alignment explanation
Indices: 6744174--6744638 Score: 569
Period size: 104 Copynumber: 4.5 Consensus size: 104
6744164 TGAATCAGCA
* * * * *
6744174 CAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCCTTATCATCTTTAAGTCCAATGTT
1 CAAGTCCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTT
6744239 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCT
* *
6744278 CAAGTCTAATATCGATGGCCTTGAATCAGCATATTGGCACATTTATCATCTTTAAGTCCAATGTT
1 CAAGTCCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTT
* *
6744343 GCTGGCCTTGAATCAGCACATTGGCACATTCTTTTTTCT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCT
* * * * * *
6744382 CAAGTCCAATATCGCTAGCTTTGAATCAGCATATTAGCACCTTTATCATCTTCAAATCCAATGTT
1 CAAGTCCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTT
*
6744447 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTTTTTCT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCT
* * * * * * ** * * *
6744486 CAAGTCTAATATAGTTAGCCTTAAATCAGCATATTAGCACCTTTGCCATCTTTAAGGCTAATGTC
1 CAAGTCCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTT
* * *
6744551 GCTAGCCTTGAGTCAGCAGATTGGCACCTT-TGTCATCTT-T
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCT-TC-T-TTCT
* * *
6744591 -AAGCCCAATAT-AATTGGCCTTGAATCAGCATATTGGCACCCTTATCAT
1 CAAGTCCAATATCGA-TGGCCTTGAATCAGCATATTGGCACCTTTATCAT
6744639 TCTTCTCATT
Statistics
Matches: 313, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
103 1 0.00
104 308 0.98
105 2 0.01
106 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (104 bp):
CAAGTCCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTT
GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCT
Found at i:6744601 original size:208 final size:208
Alignment explanation
Indices: 6744174--6744643 Score: 627
Period size: 208 Copynumber: 2.3 Consensus size: 208
6744164 TGAATCAGCA
* * * *
6744174 CAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCCTTATCATCTTTAAGTCCAATGTT
1 CAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTCAAATCCAATGTT
* * *
6744239 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCTAATATCGATGGCCTTGAAT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCTAATATAGATAGCCTTAAAT
* * * * *
6744304 CAGCATATTGGCACATTTATCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCA
131 CAGCATATTAGCACATTTACCATCTTTAAGGCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA
* **
6744369 CATTCTTTTTTCT
196 CATTCTGTCATCT
* * * * *
6744382 CAAGTCCAATATCGCTAGCTTTGAATCAGCATATTAGCACCTTTATCATCTTCAAATCCAATGTT
1 CAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTCAAATCCAATGTT
* *
6744447 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTTTTTCTCAAGTCTAATATAGTTAGCCTTAAAT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCTAATATAGATAGCCTTAAAT
* * * * *
6744512 CAGCATATTAGCACCTTTGCCATCTTTAAGGCTAATGTCGCTAGCCTTGAGTCAGCAGATTGGCA
131 CAGCATATTAGCACATTTACCATCTTTAAGGCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA
*
6744577 CCTT-TGTCATCTT
196 CATTCTGTCATC-T
* ***
6744590 TAAGCCCAATATAATTGGCCTTGAATCAGCATATTGGCACCCTTATCATTCTTC
1 CAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCA-TCTTC
6744644 TCATTTTTAA
Statistics
Matches: 223, Mismatches: 37, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
207 4 0.02
208 214 0.96
209 5 0.02
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (208 bp):
CAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATCTTCAAATCCAATGTT
GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCTAATATAGATAGCCTTAAAT
CAGCATATTAGCACATTTACCATCTTTAAGGCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA
CATTCTGTCATCT
Found at i:6745394 original size:13 final size:13
Alignment explanation
Indices: 6745376--6745400 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6745366 TTTTACAATT
6745376 TGTATCGATACAA
1 TGTATCGATACAA
6745389 TGTATCGATACA
1 TGTATCGATACA
6745401 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6747688 original size:13 final size:13
Alignment explanation
Indices: 6747670--6747694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6747660 CATAAAGTGT
6747670 TGTATCGATACAA
1 TGTATCGATACAA
6747683 TGTATCGATACA
1 TGTATCGATACA
6747695 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6747705 original size:32 final size:33
Alignment explanation
Indices: 6747650--6747713 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
6747640 TTCAACGATT
6747650 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
6747683 TGTATCGATACAT-AAGTGTTGTATCGATACA
1 TGTATCGATACATAAAGTGTTGTATCGATACA
6747714 TAAGTTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:6747707 original size:19 final size:19
Alignment explanation
Indices: 6747649--6747732 Score: 108
Period size: 19 Copynumber: 4.7 Consensus size: 19
6747639 TTTCAACGAT
6747649 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
6747669 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
6747683 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
6747701 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
6747720 TTGTATCGATACA
1 TTGTATCGATACA
6747733 ATGTAAGCTA
Statistics
Matches: 57, Mismatches: 1, Indels: 13
0.80 0.01 0.18
Matches are distributed among these distances:
13 11 0.19
15 2 0.04
17 2 0.04
19 30 0.53
20 12 0.21
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:6747793 original size:13 final size:13
Alignment explanation
Indices: 6747775--6747799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6747765 ATTACTCAAA
6747775 TGTATCGATACAT
1 TGTATCGATACAT
6747788 TGTATCGATACA
1 TGTATCGATACA
6747800 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6747853 original size:52 final size:52
Alignment explanation
Indices: 6747808--6747936 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
6747798 CACTGATCTT
*
6747808 TGTATCGATACATGTAGGCAAATTTGCCCAGATATATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAA
* * *
6747860 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAA
6747912 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
6747937 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAA
Found at i:6757968 original size:41 final size:41
Alignment explanation
Indices: 6757923--6758001 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
6757913 GATGTGAAGA
* * *
6757923 ATGATAAAGGTGCCAATATACTGGTTCATGGCCAGCAATAT
1 ATGATAAAGGTGCAAATATACTGATTCAAGGCCAGCAATAT
* *
6757964 ATGATAAAGGTGCAAATGTGCTGATTCAAGGCCAGCAA
1 ATGATAAAGGTGCAAATATACTGATTCAAGGCCAGCAA
6758002 CATTGGACTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (41 bp):
ATGATAAAGGTGCAAATATACTGATTCAAGGCCAGCAATAT
Found at i:6758068 original size:61 final size:61
Alignment explanation
Indices: 6757967--6758087 Score: 152
Period size: 61 Copynumber: 2.0 Consensus size: 61
6757957 GCAATATATG
* * *
6757967 ATAAAGGTGCAAATGTGCTGATTCAAGGCCAGCAACATTGGACTTGAAGATGAGAAGAATA
1 ATAAAGGTGCAAATATGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGAGAAGAATA
* * * * * * *
6758028 ATAAATGTGCCAATATGCTGATTCAAGGTCAACTATATTGGGCTTAAAGATGCGAAGAAT
1 ATAAAGGTGCAAATATGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGAGAAGAAT
6758088 GCCAATGTGC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (61 bp):
ATAAAGGTGCAAATATGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGAGAAGAATA
Found at i:6758794 original size:15 final size:14
Alignment explanation
Indices: 6758751--6758785 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
6758741 CGTTCTCAAC
*
6758751 AAAAGTTCTTGACA
1 AAAATTTCTTGACA
6758765 AAAATTTCTTGACA
1 AAAATTTCTTGACA
*
6758779 ACAATTT
1 AAAATTT
6758786 TTTTGACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (14 bp):
AAAATTTCTTGACA
Found at i:6760347 original size:20 final size:20
Alignment explanation
Indices: 6760322--6760392 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
6760312 AATCTAAATC
6760322 CAAATGCATGTAAAATGATA
1 CAAATGCATGTAAAATGATA
** *
6760342 CAAATGCCAATGTAATCTGAATG
1 CAAATG-C-ATGTAAAATG-ATA
*
6760365 CAAATGCAGGTAAAATGATA
1 CAAATGCATGTAAAATGATA
6760385 CAAATGCA
1 CAAATGCA
6760393 AACACCAACA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
20 16 0.39
21 8 0.20
22 9 0.22
23 8 0.20
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (20 bp):
CAAATGCATGTAAAATGATA
Found at i:6760357 original size:43 final size:43
Alignment explanation
Indices: 6760305--6760391 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
6760295 TATGCATGAA
*
6760305 CCAACGTAATCTAAATCCAAATGCATGTAAAATGATACAAATG
1 CCAACGTAATCTAAATCCAAATGCAGGTAAAATGATACAAATG
* * *
6760348 CCAATGTAATCTGAATGCAAATGCAGGTAAAATGATACAAATG
1 CCAACGTAATCTAAATCCAAATGCAGGTAAAATGATACAAATG
6760391 C
1 C
6760392 AAACACCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (43 bp):
CCAACGTAATCTAAATCCAAATGCAGGTAAAATGATACAAATG
Found at i:6760458 original size:24 final size:24
Alignment explanation
Indices: 6760426--6760481 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
6760416 ATATGCAATG
*
6760426 ATGCGAATACCACTGTCATCTAAA
1 ATGCAAATACCACTGTCATCTAAA
* *
6760450 ATGCAAATACCGCTGTCATCTATA
1 ATGCAAATACCACTGTCATCTAAA
6760474 ATGCAAAT
1 ATGCAAAT
6760482 GTAGGTGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (24 bp):
ATGCAAATACCACTGTCATCTAAA
Found at i:6761642 original size:20 final size:20
Alignment explanation
Indices: 6761619--6761656 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6761609 TTTGCTTTTG
*
6761619 TTTTTCTCTTTTTATTTCAT
1 TTTTTATCTTTTTATTTCAT
*
6761639 TTTTTATTTTTTTATTTC
1 TTTTTATCTTTTTATTTC
6761657 GAGGAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTATCTTTTTATTTCAT
Found at i:6765370 original size:161 final size:163
Alignment explanation
Indices: 6765096--6765389 Score: 391
Period size: 161 Copynumber: 1.8 Consensus size: 163
6765086 CAAAAATATT
** * * * *
6765096 AATTCAATTCAATTTTATTATTTTTGAAAATACTGTTTCGTGCCCTAATGGAGGCTCGATAAAAT
1 AATTCAATTCAATTTTATTATTTTTGAAAATACCATTTCATACCCTAATGGAAGCCCGATAAAAT
* * *
6765161 ACGAAAAGGTTTTTGAAATCCTTTATACCTCTACAGATGCCTATAGGAATAAAAAAGATT-AGAA
66 ACGAAAAAGTTTTTGAAAACCTTTATACCTCTACAGATGCCCATAGGAATAAAAAAGATTAAGAA
6765225 AAAAAAGATATTAGAATTTATCCCAATAATACC
131 AAAAAAGATATTAGAATTTATCCCAATAATACC
* *
6765258 AATTTAATTTAATTTTATTTATTTTTGAAAATACCATTTCATACCC-AATGGAAGCCCGA-AAGA
1 AATTCAATTCAATTTTA-TTATTTTTGAAAATACCATTTCATACCCTAATGGAAGCCCGATAA-A
* * * *
6765321 ATAC-AAAAAGTTTTTGAAAACTTTTA-ACCCTTTACGGATGCCCATAGGAATATAAAAGATTAA
64 ATACGAAAAAGTTTTTGAAAACCTTTATA-CCTCTACAGATGCCCATAGGAATAAAAAAGATTAA
6765384 GAAAAA
128 GAAAAA
6765390 TACACATTAT
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
160 1 0.01
161 50 0.44
162 38 0.34
163 24 0.21
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (163 bp):
AATTCAATTCAATTTTATTATTTTTGAAAATACCATTTCATACCCTAATGGAAGCCCGATAAAAT
ACGAAAAAGTTTTTGAAAACCTTTATACCTCTACAGATGCCCATAGGAATAAAAAAGATTAAGAA
AAAAAAGATATTAGAATTTATCCCAATAATACC
Found at i:6765638 original size:32 final size:32
Alignment explanation
Indices: 6765579--6765699 Score: 179
Period size: 33 Copynumber: 3.7 Consensus size: 32
6765569 GGAGGATTCG
*
6765579 ACACAAGTTGGTGGCAATCCCTTCCCAAAGCCC
1 ACACAAGTCGGTGGCAA-CCCTTCCCAAAGCCC
6765612 ACACAAGTCGGTGGCAACCCTTCCCAAAGCCC
1 ACACAAGTCGGTGGCAACCCTTCCCAAAGCCC
* * * *
6765644 ACACCAGTTGGTGGCAACCATTCTCTAAAGCCC
1 ACACAAGTCGGTGGCAACCCTTC-CCAAAGCCC
6765677 ACACAAGTCGGTGGCAACCCTTC
1 ACACAAGTCGGTGGCAACCCTTC
6765700 TAAGCCCAAT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
32 35 0.44
33 44 0.56
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.17
Consensus pattern (32 bp):
ACACAAGTCGGTGGCAACCCTTCCCAAAGCCC
Found at i:6765758 original size:49 final size:49
Alignment explanation
Indices: 6765700--6766237 Score: 657
Period size: 49 Copynumber: 10.8 Consensus size: 49
6765690 GCAACCCTTC
* *
6765700 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
6765749 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
6765798 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
6765847 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
6765896 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
6765945 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CTTGCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-CATCTT
*
6765994 TAAGTCC-ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
6766042 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
6766091 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * *
6766143 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T--TCATCTT
* * * * *
6766199 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
6766238 TCTTTATCAC
Statistics
Matches: 417, Mismatches: 61, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
48 40 0.10
49 293 0.70
51 2 0.00
52 40 0.10
53 2 0.00
55 3 0.01
56 36 0.09
57 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:6765874 original size:98 final size:98
Alignment explanation
Indices: 6765700--6766178 Score: 827
Period size: 98 Copynumber: 4.9 Consensus size: 98
6765690 GCAACCCTTC
* * *
6765700 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
6765765 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
6765798 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
6765863 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
6765896 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
6765961 GGCCTTGACTCAGCACATTGGCA-CTTGCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTT-CACCAT
6765994 TAAGTCC-ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
6766058 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* *
6766091 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGTA
*
6766156 GCTGGCCTTGAATCAGCACATTG
63 GCTGGCCTTGACTCAGCACATTG
6766179 ACATCCTTTT
Statistics
Matches: 365, Mismatches: 10, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
97 93 0.25
98 230 0.63
99 3 0.01
101 39 0.11
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (98 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCACCAT
Found at i:6766096 original size:195 final size:196
Alignment explanation
Indices: 6765700--6766178 Score: 827
Period size: 195 Copynumber: 2.4 Consensus size: 196
6765690 GCAACCCTTC
* * * *
6765700 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTTTAAGTCCAATGTAGCT
6765765 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
6765830 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCA
131 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCA
6765895 T
196 T
6765896 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTTTAAGTCCAATGTAGCT
6765961 GGCCTTGACTCAGCACATTGGCA-CTTGCACCATTAAGTCC-ATATAGCTGGCCTTGAATCAGCA
66 GGCCTTGACTCAGCACATTGGCACCTT-CACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCA
*
6766024 TATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC
130 TATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACC
*
6766089 TT
195 AT
* *
6766091 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTTT--ATCTTTAAGTCCAATGTA
*
6766156 GCTGGCCTTGAATCAGCACATTG
63 GCTGGCCTTGACTCAGCACATTG
6766179 ACATCCTTTT
Statistics
Matches: 270, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
195 129 0.48
196 102 0.38
198 39 0.14
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (196 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCA
T
Found at i:6767141 original size:33 final size:33
Alignment explanation
Indices: 6767104--6767170 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
6767094 TTCAACGATT
6767104 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
6767137 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
6767170 T
1 T
6767171 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:6767142 original size:13 final size:13
Alignment explanation
Indices: 6767124--6767148 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6767114 CATAAAATGT
6767124 TGTATCGATACAA
1 TGTATCGATACAA
6767137 TGTATCGATACA
1 TGTATCGATACA
6767149 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6767231 original size:13 final size:13
Alignment explanation
Indices: 6767213--6767237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6767203 ATTACTCACA
6767213 TGTATCGATACAT
1 TGTATCGATACAT
6767226 TGTATCGATACA
1 TGTATCGATACA
6767238 CGAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6771293 original size:14 final size:14
Alignment explanation
Indices: 6771246--6771293 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
6771236 TTTTACCTAT
*
6771246 TTTCTTTTGTTTTTC
1 TTTCTTTT-TTTCTC
6771261 -TTCTTTTTTTCTC
1 TTTCTTTTTTTCTC
*
6771274 TCTCTTTTTTTCTC
1 TTTCTTTTTTTCTC
6771288 TTTCTT
1 TTTCTT
6771294 CTTTCAACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 5 0.17
14 24 0.83
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTCTTTTTTTCTC
Found at i:6772142 original size:166 final size:163
Alignment explanation
Indices: 6771913--6772408 Score: 503
Period size: 162 Copynumber: 3.0 Consensus size: 163
6771903 AATTTCTTGG
* ** *
6771913 AAAAATAGAATTTTCAAAAAAAAAATT-AAAAATCATGAAAATGAAGTAATCTTTT-AAAACTGA
1 AAAAATA-AAATTTCAAGGAAAAAATTCAAAAATCATGAAAATGAAG-AAT-TTTTGAGAACTGA
* * *
6771976 TTTAATATG-AATCAAATTATGATGTTTAATGAATTTTAAAAATTAAAAACCAAGTAAAATCC-C
63 TTTAATATGAAAT-AAATAATGATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTC
*
6772039 TTCAAAAAAATTACGAAATAGAAAACACCGTATTTTGAA
127 -CCAAAAAAATTACGAAATAGAAAAC-CCGTATTTTGAA
* *
6772078 AAAAATAAAATTTCAAGGAAAAAATTCAAATATTTATGAAAATGAATGAATTTTTGAGAACTGAT
1 AAAAATAAAATTTCAAGGAAAAAATTCAAA-AATCATGAAAATGAA-GAATTTTTGAGAACTGAT
* **
6772143 TTAATATGAAATAAATAATGATATTTTATGAATTTTAAAAATTAAAAACTTAGAAAAATCCTCCC
64 TTAATATGAAATAAATAATGATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCC
* * *
6772208 GAAAAAATTTA-G-AGTAGAAAACTC-TATTTTTCGAA
129 -AAAAAAATTACGAAATAGAAAACCCGTA-TTTT-GAA
* * * * *
6772243 AATAGA-AAAATTTTAAGGAAAAAA-AC-AAACTCATGAAAATGAACGAATTTTTG-GAAACTAA
1 AA-AAATAAAATTTCAAGGAAAAAATTCAAAAATCATGAAAATGAA-GAATTTTTGAG-AACTGA
* ** * *
6772304 TTAAATATGAAATAAATAACAATATTTGATGAATCTTAAAAATTAAAAACCAAGAAAAATCCTCC
63 TTTAATATGAAATAAATAATGATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCC
* *
6772369 CAAAAAAATTTACGGAGA-AGAAAACCCTGTAATTTGAA
128 CAAAAAAA-TTAC-GAAATAGAAAACCC-GTATTTTGAA
6772407 AA
1 AA
6772409 CGAAAGAAAC
Statistics
Matches: 279, Mismatches: 35, Indels: 35
0.80 0.10 0.10
Matches are distributed among these distances:
161 7 0.03
162 89 0.32
163 4 0.01
164 36 0.13
165 48 0.17
166 81 0.29
167 14 0.05
ACGTcount: A:0.52, C:0.09, G:0.10, T:0.29
Consensus pattern (163 bp):
AAAAATAAAATTTCAAGGAAAAAATTCAAAAATCATGAAAATGAAGAATTTTTGAGAACTGATTT
AATATGAAATAAATAATGATATTTAATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAA
AAAAATTACGAAATAGAAAACCCGTATTTTGAA
Found at i:6773585 original size:41 final size:41
Alignment explanation
Indices: 6773505--6773628 Score: 158
Period size: 42 Copynumber: 3.0 Consensus size: 41
6773495 GAGGTTTCTT
*
6773505 AGGTCAAAGTTGACGAGTAGATAAAGGGTGAAGAAGTCTCCA
1 AGGTCAAAGTTGACAAGTAGAT-AAGGGTGAAGAAGTCTCCA
* * *
6773547 AGGTCTAAGTTGACAAGCAGATAAGGGTAAAGAAGTCTCCA
1 AGGTCAAAGTTGACAAGTAGATAAGGGTGAAGAAGTCTCCA
* * * *
6773588 GGGTCAAAGCTGACAAGTAAACTAAAGGTGAAGAAGTCTCC
1 AGGTCAAAGTTGACAAGTAGA-TAAGGGTGAAGAAGTCTCC
6773629 CAAGTCTGAG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
41 34 0.49
42 36 0.51
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.19
Consensus pattern (41 bp):
AGGTCAAAGTTGACAAGTAGATAAGGGTGAAGAAGTCTCCA
Found at i:6773641 original size:42 final size:42
Alignment explanation
Indices: 6773526--6773712 Score: 114
Period size: 41 Copynumber: 4.4 Consensus size: 42
6773516 GACGAGTAGA
* * *
6773526 TAAAGGGTGAAGAAGTCT-CCAAGGTCTAAGTTGACAAGCAGA-
1 TAAA-GGTGAAGAAGTCTCCCAA-GTCTAAGCTGACAAGTAAAC
* * * *
6773568 TAAGGGTAAAGAAGTCT-CCAGGGTCAAAGCTGACAAGTAAAC
1 TAAAGGTGAAGAAGTCTCCCA-AGTCTAAGCTGACAAGTAAAC
* *** *
6773610 TAAAGGTGAAGAAGTCTCCCAAGTCTGAGCTGATGGGTAGAC
1 TAAAGGTGAAGAAGTCTCCCAAGTCTAAGCTGACAAGTAAAC
* ** * *
6773652 TAAAAAGGTGAAGGAGTCTCCCCGGT-TGAAGCTGAC-AGAAAAA
1 T--AAAGGTGAAGAAGTCTCCCAAGTCT-AAGCTGACAAGTAAAC
* *
6773695 TAAGGGTAAAGAAGTCTC
1 TAAAGGTGAAGAAGTCTC
6773713 TCGTGGTAAA
Statistics
Matches: 111, Mismatches: 28, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
41 44 0.40
42 33 0.30
43 8 0.07
44 26 0.23
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (42 bp):
TAAAGGTGAAGAAGTCTCCCAAGTCTAAGCTGACAAGTAAAC
Found at i:6773897 original size:85 final size:85
Alignment explanation
Indices: 6773776--6773966 Score: 242
Period size: 85 Copynumber: 2.2 Consensus size: 85
6773766 AAGTCGATGG
* * * *
6773776 GTAAACACAAGGATGAAAGGTTGACCAGGAACTAAGCCGATAGGTCACCGAGGGGATAAGAGGAT
1 GTAAACA-AAGGATGAAGGGTTGACCAGGAACTAAGCCGACAAGTCAACGAGGGGATAAGAGGAT
*
6773841 TACCTGG-GACTAAGCTAACAA
65 TACC-GGAGACTAAGCCAACAA
* * *
6773862 GTAAACAAAGGATGAAGGGTTG-CTAGGAGATTAAGCCGACAAGTCAACGAGGGGATAAGAGGTT
1 GTAAACAAAGGATGAAGGGTTGACCAGGA-ACTAAGCCGACAAGTCAACGAGGGGATAAGAGGAT
* *
6773926 TACCGGAGACTAAGCCGACAG
65 TACCGGAGACTAAGCCAACAA
*
6773947 GTAAACAAGGGATGAAGGGT
1 GTAAACAAAGGATGAAGGGT
6773967 ATCTATTAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
84 7 0.08
85 78 0.85
86 7 0.08
ACGTcount: A:0.38, C:0.15, G:0.32, T:0.15
Consensus pattern (85 bp):
GTAAACAAAGGATGAAGGGTTGACCAGGAACTAAGCCGACAAGTCAACGAGGGGATAAGAGGATT
ACCGGAGACTAAGCCAACAA
Done.