Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 42 of 47
Found at i:6773940 original size:43 final size:44
Alignment explanation
Indices: 6773793--6773945 Score: 129
Period size: 43 Copynumber: 3.6 Consensus size: 44
6773783 CAAGGATGAA
* * * *
6773793 AGGTTGACCAGGA-ACTAAGCCGATAGGTCACCGAGGGGATAAG
1 AGGTTTACCAGGAGACTAAGCCGACAAGTCAACGAGGGGATAAG
* * ** * **
6773836 AGGATTACCTGG-GACTAAGCTAACAAGTAAAC-AAAGGATGAAG
1 AGGTTTACCAGGAGACTAAGCCGACAAGTCAACGAGGGGAT-AAG
* * *
6773879 -GG-TTGCTAGGAGATTAAGCCGACAAGTCAACGAGGGGATAAG
1 AGGTTTACCAGGAGACTAAGCCGACAAGTCAACGAGGGGATAAG
6773921 AGGTTTACC-GGAGACTAAGCCGACA
1 AGGTTTACCAGGAGACTAAGCCGACA
6773946 GGTAAACAAG
Statistics
Matches: 81, Mismatches: 23, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
41 5 0.06
42 26 0.32
43 47 0.58
44 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.16
Consensus pattern (44 bp):
AGGTTTACCAGGAGACTAAGCCGACAAGTCAACGAGGGGATAAG
Found at i:6775444 original size:21 final size:21
Alignment explanation
Indices: 6775420--6775464 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6775410 TTGGTGAAAA
*
6775420 GATAAGAAAATGAAGGAATTT
1 GATAAGAAAATGAAGAAATTT
* *
6775441 GATAAGTAATTGAAGAAATTT
1 GATAAGAAAATGAAGAAATTT
6775462 GAT
1 GAT
6775465 GAATATTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (21 bp):
GATAAGAAAATGAAGAAATTT
Found at i:6777280 original size:154 final size:155
Alignment explanation
Indices: 6776991--6777355 Score: 388
Period size: 154 Copynumber: 2.4 Consensus size: 155
6776981 TAAAGGGCTA
* * * *
6776991 AGTTC-AAGAAAATTACGAAAATGCTCCTAGGGGATACCTTAGACGTAAAAGTACCTGATATTCC
1 AGTTCTAA-AAAATTACAAAAATGCTCCTAAGGGATAACTTAGACGTAAAAGTACCTGATATCCC
*
6777055 TAAAGAACTTAAAAAGGACAATAAAATGGATGAAACTATCCTAAATACCCACATTTGGCATAAAA
65 TAAAGAACCTAAAAAGGACAATAAAATGGATGAAACTATCCTAAATACCCACATTTGGCATAAAA
* ** * * *
6777120 ATGGACCCGGTTACAACTTAAGACTC
130 ACGGACCCAATGACAACCTAAGAATC
* * *
6777146 AGTTCT-AAAAATTACAAAAATGCTCTTAAGGGATAACTTCGACGTGAAAA-TATCCTGGTA-CC
1 AGTTCTAAAAAATTACAAAAATGCTCCTAAGGGATAACTTAGACGT-AAAAGTA-CCTGATATCC
* * **
6777208 CTTAAAGGACCTAAAAAGGAC-TTAGAAA-GGATGATGCTATCCTAAATACCCACATTTGGCATA
64 C-TAAAGAACCTAAAAAGGACAATA-AAATGGATGAAACTATCCTAAATACCCACATTTGGCATA
* *
6777271 AAAGCGGACCCAATGATAACCTAAGAATC
127 AAAACGGACCCAATGACAACCTAAGAATC
* *
6777300 GGTTCTAGAAAAATTACAAAAATGC-CC-ATAGGAGATATA-TTCGACGTAAAAGTACC
1 AGTTCTA-AAAAATTACAAAAATGCTCCTA-AGG-GATA-ACTTAGACGTAAAAGTACC
6777356 CAATAATCCT
Statistics
Matches: 177, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
154 99 0.56
155 46 0.26
156 31 0.18
157 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (155 bp):
AGTTCTAAAAAATTACAAAAATGCTCCTAAGGGATAACTTAGACGTAAAAGTACCTGATATCCCT
AAAGAACCTAAAAAGGACAATAAAATGGATGAAACTATCCTAAATACCCACATTTGGCATAAAAA
CGGACCCAATGACAACCTAAGAATC
Found at i:6779018 original size:15 final size:15
Alignment explanation
Indices: 6778994--6779027 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6778984 TTATTTTTCA
* *
6778994 TTTAATTTAATTTAT
1 TTTAAATTAATTAAT
6779009 TTTAAATTAATTAAT
1 TTTAAATTAATTAAT
6779024 TTTA
1 TTTA
6779028 TCCTCTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAAATTAATTAAT
Found at i:6779158 original size:15 final size:17
Alignment explanation
Indices: 6779120--6779158 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
6779110 ATAAAAAGTA
*
6779120 ATAAAAAGAATTAATTT
1 ATAAAAAGAATAAATTT
6779137 ATAAAAA-AATAAATTT
1 ATAAAAAGAATAAATTT
6779153 -TAAAAA
1 ATAAAAA
6779159 TTAAGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.29
16 8 0.38
17 7 0.33
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (17 bp):
ATAAAAAGAATAAATTT
Found at i:6779662 original size:166 final size:162
Alignment explanation
Indices: 6779443--6779827 Score: 422
Period size: 166 Copynumber: 2.3 Consensus size: 162
6779433 GATTTTTCGA
* * *
6779443 AAAAAG-AGAATTTCAAGGAAAAATTTAAAAACTCATGAAAATGAGTTAATTTTTCAAAAAT-GT
1 AAAAAGAAGAATTTCAAGAAAAAATTT-AAAACTCATGAAAATGAATTAATTTTTCAAAAATAAT
* * * * *
6779506 TCTAATTTGAATTAAAT-AAAAGTGTTTGATGAATTTTAAAAATTAAAA-ATTGATGAAAATCCT
65 T-TAATATGAAATAAATGAAAA-TATTTGATGAATTTTAAAAATTAAAACA-AGA--AAAATCCC
*
6779569 CTCGA-AAAAATTTAC-GAGGAAGAAAACGCCGTATTTTG
125 CT-GAGAAAAATTTACGGAGGAA-AAAACACCGTATTTTG
* * *
6779607 AAAATAGAAGAATTTCAAAGAAAAAATTTAAAACTCATGAAAATGAATGAATTTTTGAAAACTAA
1 AAAA-AGAAGAATTTC-AAGAAAAAATTTAAAACTCATGAAAATGAATTAATTTTTCAAAAATAA
* * *
6779672 TTTAATATGAAATAAATGATAATATTTGATGAATTTTGAAAATTAAAACCAAGAAAAATCCCCTT
64 TTTAATATGAAATAAATGAAAATATTTGATGAATTTTAAAAATTAAAA-CAAGAAAAATCCCCTG
* *
6779737 AGAAAAATTTACGGAGTAAAAAATACCGTATTTTG
128 AGAAAAATTTACGGAGGAAAAAACACCGTATTTTG
* * * *
6779772 AAAAAAAAGAATTTTTAAGAAAAAATTCAAAAACTCATGAAGATGAATTAATTTTT
1 AAAAAGAAGAA-TTTCAAGAAAAAATT-TAAAACTCATGAAAATGAATTAATTTTT
6779828 GACAAATGAT
Statistics
Matches: 188, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
164 22 0.12
165 67 0.36
166 80 0.43
167 18 0.10
168 1 0.01
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (162 bp):
AAAAAGAAGAATTTCAAGAAAAAATTTAAAACTCATGAAAATGAATTAATTTTTCAAAAATAATT
TAATATGAAATAAATGAAAATATTTGATGAATTTTAAAAATTAAAACAAGAAAAATCCCCTGAGA
AAAATTTACGGAGGAAAAAACACCGTATTTTG
Found at i:6779827 original size:165 final size:160
Alignment explanation
Indices: 6779315--6779873 Score: 451
Period size: 165 Copynumber: 3.4 Consensus size: 160
6779305 CAAAAAATAA
* * * * *
6779315 AAAATAAATTAAATTTTGCAAAACTAATTT-ATTGAAAATTTAATAATAATATTAGATGAATTTT
1 AAAATGAATTAATTTTTG-AAAACTAATTTAATTG-AAA-TAAATGATAATATTTGATGAATTTT
* * * *
6779379 AAAAATTTTAAACTC-AGAAAAAT-CCTTTCGAAAATATTTAC-A-AAGAAAAAACTTGATTTTT
63 AAAAA-TTAAAAC-CAAGAAAAATCCCCTTCGAAAA-ATTTACGAGAA-AAAAACCGT-A-TTTT
* * * *
6779440 CGAAAAAAGAGAATTTCAAGGAAAAATTTAAAAACTCATG
122 -GAAAAAAAAGAATTTTAAAGAAAAAATTAAAAACTCATG
* * * * * * *
6779480 AAAATGAGTTAATTTTTCAAAAAT-GTTCTAATTTGAATTAAAT-AAAAGTGTTTGATGAATTTT
1 AAAATGAATTAATTTTTGAAAACTAATT-TAA-TTGAAATAAATGATAA-TATTTGATGAATTTT
* * *
6779543 AAAAATTAAAA--ATTGATGAAAATCCTC-TCGAAAAAATTTACGAGGAAGAAAACGCCGTATTT
63 AAAAATTAAAACCA-AGA--AAAATCCCCTTCG-AAAAATTTACGA-GAA-AAAA-ACCGTATTT
* * *
6779605 TGAAAATAGAAGAATTTCAAAGAAAAAATTTAAAACTCATG
121 TGAAAA-AAAAGAATTTTAAAGAAAAAATTAAAAACTCATG
* *
6779646 AAAATGAATGAATTTTTGAAAACTAATTTAATATGAAATAAATGATAATATTTGATGAATTTTGA
1 AAAATGAATTAATTTTTGAAAACTAATTTAAT-TGAAATAAATGATAATATTTGATGAATTTTAA
*
6779711 AAATTAAAACCAAGAAAAATCCCCTTAGAAAAATTTACGGAGTAAAAAATACCGTATTTTGAAAA
65 AAATTAAAACCAAGAAAAATCCCCTTCGAAAAATTTAC-GAG-AAAAAA-ACCGTATTTTGAAAA
*
6779776 AAAAGAATTTTTAAGAAAAAATTCAAAAACTCATG
127 AAAAGAATTTTAAAGAAAAAATT-AAAAACTCATG
* * * *
6779811 AAGATGAATTAATTTTTGACAAA-TGATTTTATGGTG-ATTAAATGATAATATTTGGA-GAATTT
1 AAAATGAATTAATTTTTGA-AAACTAATTTAAT--TGAAATAAATGATAATATTT-GATGAATTT
6779873 T
62 T
6779874 GATGTTTAAA
Statistics
Matches: 320, Mismatches: 47, Indels: 54
0.76 0.11 0.13
Matches are distributed among these distances:
162 2 0.01
163 10 0.03
164 62 0.19
165 123 0.38
166 105 0.33
167 15 0.05
168 3 0.01
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.33
Consensus pattern (160 bp):
AAAATGAATTAATTTTTGAAAACTAATTTAATTGAAATAAATGATAATATTTGATGAATTTTAAA
AATTAAAACCAAGAAAAATCCCCTTCGAAAAATTTACGAGAAAAAAACCGTATTTTGAAAAAAAA
GAATTTTAAAGAAAAAATTAAAAACTCATG
Found at i:6783154 original size:17 final size:17
Alignment explanation
Indices: 6783108--6783156 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
6783098 TTATACATAG
*
6783108 TAAATTTACTTTATTTTA
1 TAAATTTA-ATTATTTTA
*
6783126 TAAATTTTATTATTTTAA
1 TAAATTTAATTATTTT-A
6783144 TAAA-TTAATTATT
1 TAAATTTAATTATT
6783157 AAATTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
TAAATTTAATTATTTTA
Found at i:6783202 original size:46 final size:43
Alignment explanation
Indices: 6783128--6783220 Score: 105
Period size: 46 Copynumber: 2.1 Consensus size: 43
6783118 TTATTTTATA
* **
6783128 AATTTTATTATTTTAATAAATTAATTATTAAATTTAATAATAT
1 AATTATATTATTTTAATAAATTAATTATTAAATCGAATAATAT
** *
6783171 AATTATATTATTATTAATTAAATATTTTTATTATATCGAATAATAT
1 AATTATATTATT-TTAA-TAAAT-TAATTATTAAATCGAATAATAT
6783217 AATT
1 AATT
6783221 TTTTACATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 11 0.27
44 4 0.10
45 5 0.12
46 21 0.51
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (43 bp):
AATTATATTATTTTAATAAATTAATTATTAAATCGAATAATAT
Found at i:6783222 original size:23 final size:23
Alignment explanation
Indices: 6783163--6783222 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
6783153 TATTAAATTT
* *
6783163 AATAATATAATTATATTATTATT
1 AATAATATAATTTTATTATTATG
*
6783186 AATTAA-ATATTTTTATTA-TATCG
1 AA-TAATATAATTTTATTATTAT-G
6783209 AATAATATAATTTT
1 AATAATATAATTTT
6783223 TTACATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
22 6 0.20
23 21 0.70
24 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
AATAATATAATTTTATTATTATG
Found at i:6783257 original size:25 final size:25
Alignment explanation
Indices: 6783209--6783278 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
6783199 TATTATATCG
* *
6783209 AATA-ATATAATTT-TTTACATTTT
1 AATATATATAATTTATTTAAAATTT
* *
6783232 AATATTTTTAATTTATTTAAAATTT
1 AATATATATAATTTATTTAAAATTT
*
6783257 AATATATATAATTTATATAAAA
1 AATATATATAATTTATTTAAAA
6783279 AATATATAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
23 4 0.11
24 7 0.18
25 27 0.71
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (25 bp):
AATATATATAATTTATTTAAAATTT
Found at i:6783327 original size:11 final size:11
Alignment explanation
Indices: 6783259--6783331 Score: 58
Period size: 11 Copynumber: 6.4 Consensus size: 11
6783249 TAAAATTTAA
* *
6783259 TATATATAATT
1 TATATAAAAAT
*
6783270 TATATAAAAAA
1 TATATAAAAAT
6783281 TATATAATATAAT
1 TATATAA-A-AAT
6783294 TAT-TAAATTAAT
1 TATATAAA--AAT
* *
6783306 TAAATATAAAT
1 TATATAAAAAT
6783317 TATATAAAAAT
1 TATATAAAAAT
6783328 TATA
1 TATA
6783332 AACATATATA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
11 32 0.64
12 10 0.20
13 8 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TATATAAAAAT
Found at i:6783352 original size:49 final size:47
Alignment explanation
Indices: 6783262--6783355 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 47
6783252 AATTTAATAT
* * **
6783262 ATATAATTTATATAAAAAATATATAATATAATTATTAAATTAATTAA
1 ATATAAATTATATAAAAAATATAAAATATAAAAATTAAATTAATTAA
*
6783309 ATATAAATTATATAAAAATTATAAACATATATAAAATTAAATTAATT
1 ATATAAATTATATAAAAAATATAAA-ATATA-AAAATTAAATTAATT
6783356 TTAAATTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 22 0.55
48 5 0.12
49 13 0.32
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (47 bp):
ATATAAATTATATAAAAAATATAAAATATAAAAATTAAATTAATTAA
Found at i:6783361 original size:45 final size:47
Alignment explanation
Indices: 6783249--6783369 Score: 124
Period size: 47 Copynumber: 2.6 Consensus size: 47
6783239 TTAATTTATT
* * *
6783249 TAAAATTTAA-TATATATAATTTATATAAAAAATATATAATATAATTA
1 TAAAA-TTAATTAAATATAAATTATATAAAAAATATATAACATAATTA
* *
6783296 TTAAATTAATTAAATATAAATTATATAAAAATTATA-AACAT-A-TA
1 TAAAATTAATTAAATATAAATTATATAAAAAATATATAACATAATTA
* *
6783340 TAAAATTAAATTAATTTTAAATTATTATAA
1 TAAAATT-AATTAAATATAAATTA-TATAA
6783370 GTACAAAATA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
44 8 0.13
45 15 0.24
46 13 0.21
47 27 0.43
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (47 bp):
TAAAATTAATTAAATATAAATTATATAAAAAATATATAACATAATTA
Found at i:6783390 original size:2 final size:2
Alignment explanation
Indices: 6783377--6783416 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
6783367 TAAGTACAAA
*
6783377 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6783417 CTCACGATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6783620 original size:2 final size:2
Alignment explanation
Indices: 6783613--6783642 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6783603 CTATTATTGA
6783613 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6783643 CTTAACAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6787517 original size:20 final size:19
Alignment explanation
Indices: 6787491--6787530 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6787481 AAATTAAAAA
6787491 TTAT-TTTTAT-ATTAATAT
1 TTATATTTTATAATTAA-AT
6787509 TTATATTTTATAATTAAAT
1 TTATATTTTATAATTAAAT
6787528 TTA
1 TTA
6787531 AATAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 11 0.55
20 5 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATATTTTATAATTAAAT
Found at i:6787528 original size:43 final size:44
Alignment explanation
Indices: 6787453--6787550 Score: 101
Period size: 43 Copynumber: 2.2 Consensus size: 44
6787443 ATCATACTAC
*
6787453 TTATATTTATTATTTATAATTAATAAAAAAA-TTAAA-AATTATTT
1 TTATA-TTAATATTTATAATTAATAAAAAAATTTAAATAATT-TTT
* * **
6787497 TTATATTAATATTTATATTTTATAATTAAATTTAAATAATTTTT
1 TTATATTAATATTTATAATTAATAAAAAAATTTAAATAATTTTT
*
6787541 TAATTATTAA
1 TTA-TATTAA
6787551 ATTCCAATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
43 20 0.44
44 15 0.33
45 10 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (44 bp):
TTATATTAATATTTATAATTAATAAAAAAATTTAAATAATTTTT
Found at i:6788006 original size:40 final size:39
Alignment explanation
Indices: 6787932--6788017 Score: 106
Period size: 39 Copynumber: 2.2 Consensus size: 39
6787922 ATTATTGATA
*
6787932 TTTTATTTTATTTATTTAAAAAATATAATAATATTTATG
1 TTTTATTTTATATATTTAAAAAATATAATAATATTTATG
*
6787971 TTTTATTATTATATATTT-AAAATTA-AATAATATATT-TG
1 TTTTATT-TTATATATTTAAAAAATATAATAATAT-TTATG
6788009 TTATTATTT
1 TT-TTATTT
6788018 ATGAATAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
38 13 0.31
39 20 0.48
40 9 0.21
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (39 bp):
TTTTATTTTATATATTTAAAAAATATAATAATATTTATG
Found at i:6788103 original size:21 final size:22
Alignment explanation
Indices: 6788063--6788106 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
6788053 TCATATTTTT
6788063 AAATAAATATATTATAATTTAA
1 AAATAAATATATTATAATTTAA
* *
6788085 AAATAATTTTATT-TAATTTAA
1 AAATAAATATATTATAATTTAA
6788106 A
1 A
6788107 TAAATTGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAAATATATTATAATTTAA
Found at i:6788107 original size:19 final size:20
Alignment explanation
Indices: 6788060--6788111 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
6788050 GATTCATATT
6788060 TTTAAATAAATATATTATAA
1 TTTAAATAAATATATTATAA
* *
6788080 TTTAAAAATAATTTTATT-TAA
1 TTT--AAATAAATATATTATAA
6788101 TTTAAATAAAT
1 TTTAAATAAAT
6788112 TGAGTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 7 0.26
20 3 0.11
21 6 0.22
22 11 0.41
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTAAATAAATATATTATAA
Found at i:6789368 original size:37 final size:36
Alignment explanation
Indices: 6789319--6789391 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
6789309 ATTAGAATTA
* *
6789319 AAAATATTATAAG-TAATAAAAAATTAAAATATAATAT
1 AAAATATGATAAGAT-ATAAAAAAATAAAATA-AATAT
*
6789356 AAAATATGATAAGATATAAAAAAATAACATAAATAT
1 AAAATATGATAAGATATAAAAAAATAAAATAAATAT
6789392 GATATAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 5 0.16
37 26 0.81
38 1 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (36 bp):
AAAATATGATAAGATATAAAAAAATAAAATAAATAT
Found at i:6789376 original size:29 final size:29
Alignment explanation
Indices: 6789339--6789408 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
6789329 AAGTAATAAA
* *
6789339 AAAT-TAAAATATAATATAAAATATGATA-
1 AAATATAAAAAATAACAT-AAATATGATAT
*
6789367 AGATATAAAAAAATAACATAAATATGATAT
1 AAATAT-AAAAAATAACATAAATATGATAT
6789397 AAATATAAAAAA
1 AAATATAAAAAA
6789409 ATTTTAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 3 0.09
29 17 0.49
30 15 0.43
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.27
Consensus pattern (29 bp):
AAATATAAAAAATAACATAAATATGATAT
Found at i:6790400 original size:2 final size:2
Alignment explanation
Indices: 6790395--6790430 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6790385 ACACACACAC
6790395 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6790431 GGTAAATCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6797402 original size:159 final size:157
Alignment explanation
Indices: 6796980--6797444 Score: 453
Period size: 159 Copynumber: 2.9 Consensus size: 157
6796970 TTTTTACGAA
* * * ***
6796980 AAACCAAAGCATCAATATCATTTATCCTAATGAGAAAAACATGTTTTTGTTGTCCAATTTTGAAA
1 AAACTAAAGCATCAATATCATGTATCCTAATGAGGAAAACATGTTTTTGTTG-CCAAACATGAAA
* *
6797045 A-AA-AGGAAATTATTACAAGAATTTGTGTTTGTCTTAGTTAAGGGATGAACTTTGATTCTAAGA
65 AGAATA-GAAATTATTACAAGAATTTGTGTTTGTCTTATTTGAGGGATGAACTTTGATTCTAAGA
* * *
6797108 AAAATAGTGGAAAGAAATGCTTTTCCTATG
129 AAAATGGTGGAAAGAAAAG-TTTTCCTACG
* * * * * **
6797138 AAA-TCAAAGAATCAATATCATGCATCCTTATGAAGAGAACATGTTTTT-TTAGCCAAATCACAA
1 AAACT-AAAGCATCAATATCATGTATCCTAATGAGGAAAACATGTTTTTGTT-GCCAAA-CATGA
* ** * *
6797201 AAAGAAT-GAAAATTGTTACAAGAATTTGTGTCAGTCTAATTTGAGGGATGGACTTTGATTCTAA
63 AAAGAATAG-AAATTATTACAAGAATTTGTGTTTGTCTTATTTGAGGGATGAACTTTGATTCTAA
* *
6797265 GAAAAATGGT-GAATAGAAAAGTATTTCTTGCG
127 GAAAAATGGTGGAA-AGAAAAGT-TTTCCTACG
* * *
6797297 AAACTAAAGCATTAATATCGTGTATCCTAATGAGGAAAACGTGTTTTTGTTGCCTAAACATGAAA
1 AAACTAAAGCATCAATATCATGTATCCTAATGAGGAAAACATGTTTTTGTTGCC-AAACATGAAA
* * ** * *
6797362 AGAATAGAAATTATTACGAA-AATTAGAGTTTGAATTATTTGA-GGAAGAAACTTTGATTCT-AC
65 AGAATAGAAATTATTAC-AAGAATTTGTGTTTGTCTTATTTGAGGGATG-AACTTTGATTCTAAG
6797424 AAAAATGGTGGAAAGAAAAGT
128 AAAAATGGTGGAAAGAAAAGT
6797445 GTGTTTTTGT
Statistics
Matches: 246, Mismatches: 46, Indels: 30
0.76 0.14 0.09
Matches are distributed among these distances:
157 6 0.02
158 71 0.29
159 160 0.65
160 9 0.04
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (157 bp):
AAACTAAAGCATCAATATCATGTATCCTAATGAGGAAAACATGTTTTTGTTGCCAAACATGAAAA
GAATAGAAATTATTACAAGAATTTGTGTTTGTCTTATTTGAGGGATGAACTTTGATTCTAAGAAA
AATGGTGGAAAGAAAAGTTTTCCTACG
Found at i:6814461 original size:18 final size:18
Alignment explanation
Indices: 6814438--6814474 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
6814428 ACTCAATAGC
*
6814438 TTATCCTCAATCCAATGG
1 TTATCCTAAATCCAATGG
6814456 TTATCCTAAATCCAATGG
1 TTATCCTAAATCCAATGG
6814474 T
1 T
6814475 CAGGTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (18 bp):
TTATCCTAAATCCAATGG
Found at i:6815335 original size:14 final size:13
Alignment explanation
Indices: 6815316--6815358 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 13
6815306 CACAAATGAC
6815316 ATATAAACTTTAAT
1 ATATAAA-TTTAAT
6815330 ATATAAATTTAA-
1 ATATAAATTTAAT
*
6815342 AT-TATATTTAAT
1 ATATAAATTTAAT
6815354 ATATA
1 ATATA
6815359 TATATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 8 0.31
12 4 0.15
13 7 0.27
14 7 0.27
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATAAATTTAAT
Found at i:6815360 original size:13 final size:13
Alignment explanation
Indices: 6815324--6815361 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
6815314 ACATATAAAC
*
6815324 TTTAATATATAAA
1 TTTAATATATATA
6815337 TTTAA-AT-TATA
1 TTTAATATATATA
6815348 TTTAATATATATA
1 TTTAATATATATA
6815361 T
1 T
6815362 ATTTTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
11 8 0.36
12 4 0.18
13 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTAATATATATA
Found at i:6816483 original size:11 final size:11
Alignment explanation
Indices: 6816464--6816493 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
6816454 ATCATAACAC
6816464 AAATAATAATAT
1 AAAT-ATAATAT
6816476 AAATATAATAT
1 AAATATAATAT
6816487 AAATATA
1 AAATATA
6816494 CAAATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATATAATAT
Found at i:6817672 original size:2 final size:2
Alignment explanation
Indices: 6817667--6817715 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
6817657 AATGTGTGTG
* *
6817667 TA TA TA TA AA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6817709 TA TA TA T
1 TA TA TA T
6817716 GTGTGTATCT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:6818477 original size:22 final size:22
Alignment explanation
Indices: 6818446--6818508 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
6818436 ACTTAAATAA
6818446 TAGTAATGAGCATAATAATCCT
1 TAGTAATGAGCATAATAATCCT
* * *
6818468 TATTAATGAGCTTACTAATCCT
1 TAGTAATGAGCATAATAATCCT
*
6818490 TAGTAATAAGCATAATAAT
1 TAGTAATGAGCATAATAAT
6818509 TGCTGACCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (22 bp):
TAGTAATGAGCATAATAATCCT
Found at i:6819327 original size:19 final size:19
Alignment explanation
Indices: 6819296--6819348 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 19
6819286 GCATCTTTTC
6819296 ATATTTT-TATTATACTTT
1 ATATTTTATATTATACTTT
6819314 -TATTTTTATATTATA-TTT
1 ATA-TTTTATATTATACTTT
6819332 ATATTTTATATTCATAC
1 ATATTTTATATT-ATAC
6819349 CATATTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.07
18 16 0.53
19 12 0.40
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (19 bp):
ATATTTTATATTATACTTT
Found at i:6819573 original size:16 final size:16
Alignment explanation
Indices: 6819552--6819583 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6819542 TTGTATTCAA
6819552 ATTTTTATTTTATTAT
1 ATTTTTATTTTATTAT
*
6819568 ATTTTTATTTTTTTAT
1 ATTTTTATTTTATTAT
6819584 CTTATCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
ATTTTTATTTTATTAT
Found at i:6820950 original size:13 final size:13
Alignment explanation
Indices: 6820932--6820961 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
6820922 TCAAGGCAAC
6820932 AGGAGGGTGATTT
1 AGGAGGGTGATTT
6820945 AGGAGGGTGATTT
1 AGGAGGGTGATTT
6820958 AGGA
1 AGGA
6820962 AACTTGCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.47, T:0.27
Consensus pattern (13 bp):
AGGAGGGTGATTT
Found at i:6822272 original size:16 final size:17
Alignment explanation
Indices: 6822252--6822298 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
6822242 CCATTTTTTC
6822252 CTTTTTTCTTTTTTATT
1 CTTTTTTCTTTTTTATT
*
6822269 -TTTTTTCTTCTTTATT
1 CTTTTTTCTTTTTTATT
*
6822285 CCTTCTTTCTTTTT
1 -CTTTTTTCTTTTT
6822299 CTTCCCAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 15 0.60
18 10 0.40
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTTCTTTTTTATT
Found at i:6822424 original size:20 final size:20
Alignment explanation
Indices: 6822399--6822436 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6822389 ATTTATGATC
6822399 AATTTTTCTTAAATCTATTT
1 AATTTTTCTTAAATCTATTT
* *
6822419 AATTTTTTTTAGATCTAT
1 AATTTTTCTTAAATCTAT
6822437 AAGAAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (20 bp):
AATTTTTCTTAAATCTATTT
Found at i:6822882 original size:59 final size:59
Alignment explanation
Indices: 6822790--6822910 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
6822780 TCTTTTACTT
6822790 TAGCTAAAATCTAGAATATATATACTAAAAGAGCTTGAAGTGATTAGAGATTTTGTTAG
1 TAGCTAAAATCTAGAATATATATACTAAAAGAGCTTGAAGTGATTAGAGATTTTGTTAG
*
6822849 TAGCTAAAATCTAGAATATATATACTAAAAGAGCTTGAAGTGGTTAGAGATTTTGTTAG
1 TAGCTAAAATCTAGAATATATATACTAAAAGAGCTTGAAGTGATTAGAGATTTTGTTAG
6822908 TAG
1 TAG
6822911 ATTGGGGACC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.34
Consensus pattern (59 bp):
TAGCTAAAATCTAGAATATATATACTAAAAGAGCTTGAAGTGATTAGAGATTTTGTTAG
Found at i:6823002 original size:15 final size:15
Alignment explanation
Indices: 6822982--6823012 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6822972 TGGTCATGCC
*
6822982 TTTTTTTGTCTTTTT
1 TTTTTTTGTATTTTT
6822997 TTTTTTTGTATTTTT
1 TTTTTTTGTATTTTT
6823012 T
1 T
6823013 AATCTTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.87
Consensus pattern (15 bp):
TTTTTTTGTATTTTT
Found at i:6826889 original size:8 final size:8
Alignment explanation
Indices: 6826878--6826903 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
6826868 TTATTTTTTA
6826878 ATTAAAAT
1 ATTAAAAT
6826886 ATTAAAAT
1 ATTAAAAT
6826894 ATTAAAAT
1 ATTAAAAT
6826902 AT
1 AT
6826904 ACTTGAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATTAAAAT
Found at i:6827768 original size:16 final size:17
Alignment explanation
Indices: 6827739--6827770 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6827729 ATAAAAAAAA
6827739 TTTATTATTTTTAAATT
1 TTTATTATTTTTAAATT
6827756 TTTATTA-TTTTAAAT
1 TTTATTATTTTTAAAT
6827771 ATATAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTATTTTTAAATT
Found at i:6830264 original size:2 final size:2
Alignment explanation
Indices: 6830252--6830293 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
6830242 AAAATAACTC
*
6830252 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6830294 AACCCAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:6833607 original size:14 final size:15
Alignment explanation
Indices: 6833588--6833620 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6833578 AAAAGACATT
*
6833588 AAGTCTATCTTAA-A
1 AAGTCTATATTAAGA
6833602 AAGTCTATATTAAGA
1 AAGTCTATATTAAGA
6833617 AAGT
1 AAGT
6833621 TTTAGAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.33
Consensus pattern (15 bp):
AAGTCTATATTAAGA
Found at i:6834997 original size:21 final size:20
Alignment explanation
Indices: 6834951--6835003 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
6834941 ATAGCCAAAC
**
6834951 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACCAAAAA
6834971 -TGTATCGATACACCAAAAAA
1 TTGTATCGATACACC-AAAAA
6834991 TTGTATCGATACA
1 TTGTATCGATACA
6835004 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.48
20 3 0.10
21 12 0.41
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (20 bp):
TTGTATCGATACACCAAAAA
Found at i:6841168 original size:13 final size:13
Alignment explanation
Indices: 6841150--6841188 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
6841140 ACATTTTTCT
6841150 TTGTATCGATACA
1 TTGTATCGATACA
6841163 TTGTATCGATACA
1 TTGTATCGATACA
*
6841176 CTGTATCGATACA
1 TTGTATCGATACA
6841189 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:6843091 original size:39 final size:39
Alignment explanation
Indices: 6843048--6843147 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 39
6843038 GAGAATGCGT
* *
6843048 GAATTTGCTAAAATTACCTTATTAAGGGGGAGAATGTAC
1 GAATTTGTTAAAATTACCATATTAAGGGGGAGAATGTAC
6843087 GAATTTGTTAAAATTATTATTACCATATTAAGGGGGAGAATGTAC
1 GAATTTGTT--AA--A--ATTACCATATTAAGGGGGAGAATGTAC
6843132 GAATTTGTTAAAATTA
1 GAATTTGTTAAAATTA
6843148 TTTTGATTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
39 12 0.23
41 3 0.06
43 3 0.06
45 35 0.66
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (39 bp):
GAATTTGTTAAAATTACCATATTAAGGGGGAGAATGTAC
Found at i:6843124 original size:45 final size:45
Alignment explanation
Indices: 6843060--6843149 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
6843050 ATTTGCTAAA
*
6843060 ATTACCTTATTAAGGGGGAGAATGTACGAATTTGTTAAAATTATT
1 ATTACCATATTAAGGGGGAGAATGTACGAATTTGTTAAAATTATT
6843105 ATTACCATATTAAGGGGGAGAATGTACGAATTTGTTAAAATTATT
1 ATTACCATATTAAGGGGGAGAATGTACGAATTTGTTAAAATTATT
6843150 TTGATTAAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (45 bp):
ATTACCATATTAAGGGGGAGAATGTACGAATTTGTTAAAATTATT
Found at i:6843823 original size:63 final size:63
Alignment explanation
Indices: 6843741--6843880 Score: 271
Period size: 63 Copynumber: 2.2 Consensus size: 63
6843731 ACATGAAAAA
6843741 TATGTATCGATACATGTCATTGGGAATTCTTGGCAGTAGCCAAACTTGTATCGATACACCAAG
1 TATGTATCGATACATGTCATTGGGAATTCTTGGCAGTAGCCAAACTTGTATCGATACACCAAG
6843804 TATGTATCGATACATGTCATTGGGAATTCTTGGCAGTAGCCAAACTTGTATCGATACACCAAG
1 TATGTATCGATACATGTCATTGGGAATTCTTGGCAGTAGCCAAACTTGTATCGATACACCAAG
*
6843867 TATGTATTGATACA
1 TATGTATCGATACA
6843881 ATGTATCGAT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 76 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (63 bp):
TATGTATCGATACATGTCATTGGGAATTCTTGGCAGTAGCCAAACTTGTATCGATACACCAAG
Found at i:6844308 original size:24 final size:24
Alignment explanation
Indices: 6844276--6844343 Score: 108
Period size: 20 Copynumber: 3.0 Consensus size: 24
6844266 GCCTAGTTAG
6844276 AGAGAAGTAGAACCAAGCAAGAAA
1 AGAGAAGTAGAACCAAGCAAGAAA
6844300 AGAGAAGTAGAACCAAG-AAG---
1 AGAGAAGTAGAACCAAGCAAGAAA
6844320 AGAGAAGTAGAACCAAGCAAGAAA
1 AGAGAAGTAGAACCAAGCAAGAAA
6844344 CATCTAGCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
20 17 0.43
21 3 0.08
23 3 0.08
24 17 0.43
ACGTcount: A:0.57, C:0.12, G:0.26, T:0.04
Consensus pattern (24 bp):
AGAGAAGTAGAACCAAGCAAGAAA
Found at i:6844457 original size:202 final size:202
Alignment explanation
Indices: 6844111--6844479 Score: 738
Period size: 202 Copynumber: 1.8 Consensus size: 202
6844101 CAGCAAAACA
6844111 CAAGAAGAGAGAAGTAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTCAAAGATCAAAGTG
1 CAAGAAGAGAGAAGTAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTCAAAGATCAAAGTG
6844176 TTTTATATTTTTCAAGAGCTTTTGTTCATATTGTTATTATTTTCTAAGCTCTTTGTATTTGATTT
66 TTTTATATTTTTCAAGAGCTTTTGTTCATATTGTTATTATTTTCTAAGCTCTTTGTATTTGATTT
6844241 CAAGCTTAAATTCCCACAAACACAAGCCTAGTTAGAGAGAAGTAGAACCAAGCAAGAAAAGAGAA
131 CAAGCTTAAATTCCCACAAACACAAGCCTAGTTAGAGAGAAGTAGAACCAAGCAAGAAAAGAGAA
6844306 GTAGAAC
196 GTAGAAC
6844313 CAAGAAGAGAGAAGTAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTCAAAGATCAAAGTG
1 CAAGAAGAGAGAAGTAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTCAAAGATCAAAGTG
6844378 TTTTATATTTTTCAAGAGCTTTTGTTCATATTGTTATTATTTTCTAAGCTCTTTGTATTTGATTT
66 TTTTATATTTTTCAAGAGCTTTTGTTCATATTGTTATTATTTTCTAAGCTCTTTGTATTTGATTT
6844443 CAAGCTTAAATTCCCACAAACACAAGCCTAGTTAGAG
131 CAAGCTTAAATTCCCACAAACACAAGCCTAGTTAGAG
6844480 GCAAACTTTG
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 167 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (202 bp):
CAAGAAGAGAGAAGTAGAACCAAGCAAGAAACATCTAGCATTCAAAGTTTTCAAAGATCAAAGTG
TTTTATATTTTTCAAGAGCTTTTGTTCATATTGTTATTATTTTCTAAGCTCTTTGTATTTGATTT
CAAGCTTAAATTCCCACAAACACAAGCCTAGTTAGAGAGAAGTAGAACCAAGCAAGAAAAGAGAA
GTAGAAC
Found at i:6845552 original size:15 final size:15
Alignment explanation
Indices: 6845534--6845581 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
6845524 ATTTCATGCT
*
6845534 ATATTTATGTAAATC
1 ATATTTATATAAATC
* *
6845549 ATATATATATAAATT
1 ATATTTATATAAATC
6845564 ATATTTATATAAATC
1 ATATTTATATAAATC
6845579 ATA
1 ATA
6845582 CATGTAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (15 bp):
ATATTTATATAAATC
Found at i:6849125 original size:12 final size:12
Alignment explanation
Indices: 6849102--6849139 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
6849092 GACCATGGCC
6849102 TCTTTCTTTCTTT
1 TCTTT-TTTCTTT
6849115 TCTTTTTTCTTT
1 TCTTTTTTCTTT
*
6849127 TTTTTTTTCTTT
1 TCTTTTTTCTTT
6849139 T
1 T
6849140 GATTTAGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TCTTTTTTCTTT
Found at i:6849381 original size:14 final size:15
Alignment explanation
Indices: 6849345--6849385 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
6849335 TTAATTCAGT
6849345 TAAAAATTATATAAA
1 TAAAAATTATATAAA
*
6849360 AAATAAATTATA-AAA
1 TAA-AAATTATATAAA
6849375 TAAAAA-TATAT
1 TAAAAATTATAT
6849386 GTATAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
13 4 0.18
14 3 0.14
15 7 0.32
16 8 0.36
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAAATTATATAAA
Found at i:6850595 original size:207 final size:210
Alignment explanation
Indices: 6850260--6850649 Score: 502
Period size: 207 Copynumber: 1.9 Consensus size: 210
6850250 CCTGTATTCC
* * * *
6850260 GCTTCTGTAGAGAACCTTACAACTGTTTTATGTTAACTGGATTTCCAAGAAATAGATTTCCTCCC
1 GCTTCTGTAAAGAACCTTACAACTATTCTATATTAACTGGATTTCCAAGAAATAGATTTCCTCCC
* *
6850325 AAGTATAGAATATAGGCAGTGGTTGAGGATAGATCATCCAAGTTTCCTACCCAATCAGCATCACT
66 AAGTATAGAATATAGGCAGTGGTTGAGGATACATCATCCAAGTTACCTACCCAATCAGCATCACT
* * * * *
6850390 GAAAGCATACGAGTGTGGTTTAGGAG-T-CC-TAAAAAGCAAACCATGATGTATTAGCAATAGCA
131 AAAAGCAGACGAGTATAGTTTAGGAGTTCCCATAAAAAACAAACCATGATGTATTAGCAATAGCA
6850452 ATAGCCATGTATTTA
196 ATAGCCATGTATTTA
* * **
6850467 GCTTCTGTAAAGGACCTTGCAACTATTCTATATTTGCTGGATTTCCAAGAAATAGATTTCCT-CC
1 GCTTCTGTAAAGAACCTTACAACTATTCTATATTAACTGGATTTCCAAGAAATAGATTTCCTCCC
* * * * ***
6850531 AAGGTATATAATATATGTAGTGGTTGAGGATCCATCATTTGAG-TACCTAGCCCAATCAGCATCA
66 AA-GTATAGAATATAGGCAGTGGTTGAGGATACATCATCCAAGTTACCTA-CCCAATCAGCATCA
* * *
6850595 CTAAAAGCAGACGATTATATTTTAGGAGTTCCCATAAAAAACAAACCCTGATGTA
129 CTAAAAGCAGACGAGTATAGTTTAGGAGTTCCCATAAAAAACAAACCATGATGTA
6850650 ATGTAACTTT
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
206 9 0.06
207 122 0.80
208 1 0.01
209 2 0.01
210 19 0.12
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (210 bp):
GCTTCTGTAAAGAACCTTACAACTATTCTATATTAACTGGATTTCCAAGAAATAGATTTCCTCCC
AAGTATAGAATATAGGCAGTGGTTGAGGATACATCATCCAAGTTACCTACCCAATCAGCATCACT
AAAAGCAGACGAGTATAGTTTAGGAGTTCCCATAAAAAACAAACCATGATGTATTAGCAATAGCA
ATAGCCATGTATTTA
Found at i:6851915 original size:50 final size:50
Alignment explanation
Indices: 6851813--6852072 Score: 243
Period size: 50 Copynumber: 5.2 Consensus size: 50
6851803 AGGTTTTGTC
* ** * * * *
6851813 ATTGTTGACTATTCTTCATCAATTTTTGACAATCGAA-AAAGATGGTCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATC-AAGAGAGGTGGCCGTA
* * * * * *
6851863 ATTATTGACTATTCTCCATCAACCTTTAATAATCAAGAGAGGTGACCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGGTGGCCGTA
* * * * *
6851913 ATTGTTGACTATTTTTCATCAACATTTGACAATCGAGAGAGGTGGCTGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGGTGGCCGTA
* * * * *
6851963 ATTATTGACGATTCTTCACCAACTTTTGACAATTAAGAGAGGTGGCCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGGTGGCCGTA
* * * * * *
6852013 ATTGTTAACTATTCTTCACCAACCTTTGATAATAAAAAGAGATGGTCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGGTGGCCGTA
6852063 ATTGTTGACT
1 ATTGTTGACT
6852073 CTAAGCAACT
Statistics
Matches: 169, Mismatches: 40, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
49 2 0.01
50 167 0.99
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (50 bp):
ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGGTGGCCGTA
Found at i:6852001 original size:100 final size:100
Alignment explanation
Indices: 6851813--6852071 Score: 279
Period size: 100 Copynumber: 2.6 Consensus size: 100
6851803 AGGTTTTGTC
** *
6851813 ATTGTTGACTATTCTTCATCAATTTTTGACAATCGAAAAAGATGGTCATAATTATTGACTATTCT
1 ATTGTTGACTATTCTTCATCAACATTTGACAATCGAAAAAGATGGTCATAATTATTGACGATTCT
* * *
6851878 CCATCAACCTTTAATAATCAAGAGAGGTGACCGTA
66 CCACCAACCTTTAACAATCAAGAGAGGTGACCATA
* * * * *
6851913 ATTGTTGACTATTTTTCATCAACATTTGACAATCGAGAGAGGTGG-CTGTAATTATTGACGATTC
1 ATTGTTGACTATTCTTCATCAACATTTGACAATCGAAAAAGATGGTC-ATAATTATTGACGATTC
* * * * *
6851977 TTCACCAACTTTTGACAATTAAGAGAGGTGGCCATA
65 TCCACCAACCTTTAACAATCAAGAGAGGTGACCATA
* * * * * * *
6852013 ATTGTTAACTATTCTTCACCAACCTTTGATAAT-AAAAAGAGATGGTCGTAATTGTTGAC
1 ATTGTTGACTATTCTTCATCAACATTTGACAATCGAAAA-AGATGGTCATAATTATTGAC
6852072 TCTAAGCAAC
Statistics
Matches: 130, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
99 3 0.02
100 126 0.97
101 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (100 bp):
ATTGTTGACTATTCTTCATCAACATTTGACAATCGAAAAAGATGGTCATAATTATTGACGATTCT
CCACCAACCTTTAACAATCAAGAGAGGTGACCATA
Found at i:6856509 original size:50 final size:50
Alignment explanation
Indices: 6856450--6856708 Score: 329
Period size: 50 Copynumber: 5.2 Consensus size: 50
6856440 AGGTGTTGCC
*
6856450 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGATGGTCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCATA
* * * * *
6856500 ATTGTTGACTATTTTTCACCTACTTTTGACAATCGAGAGAGGTGGCCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCATA
* * * *
6856550 ATTGTTGATTATTTTTCACCAACCTTTGACAATCGACAGAGGTGGTCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCATA
* * * ** **
6856600 ATTGTTAACGATTCTTCACCAACCTTTAACGCTTAAGAGAGGTGGTCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCATA
* * * *
6856650 ATTGTTGACTATTCTTCACCAACTTTTGATAATAGAGAGAGGTAGTCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCATA
6856700 ATTGTTGAC
1 ATTGTTGAC
6856709 CCTAAGCAAC
Statistics
Matches: 177, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 177 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (50 bp):
ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCATA
Found at i:6862097 original size:10 final size:10
Alignment explanation
Indices: 6862078--6862119 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
6862068 AATCAATTCT
6862078 AAAATTATTA
1 AAAATTATTA
*
6862088 AAATTTATTA
1 AAAATTATTA
* *
6862098 AAAAATATAA
1 AAAATTATTA
6862108 AAAATTA-TA
1 AAAATTATTA
6862117 AAA
1 AAA
6862120 TTTTTCAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
9 4 0.15
10 22 0.85
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTATTA
Found at i:6863081 original size:20 final size:19
Alignment explanation
Indices: 6863043--6863081 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
6863033 CTTACTTAAT
* *
6863043 TAAAATTATTTATTTTATA
1 TAAAATTATTAAATTTATA
6863062 TAAAATTAATTAAATTTATA
1 TAAAATT-ATTAAATTTATA
6863082 ATATATCTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAAAATTATTAAATTTATA
Found at i:6863553 original size:28 final size:27
Alignment explanation
Indices: 6863498--6863559 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
6863488 ATCACCTATT
6863498 TATTTGTCAAAAATAGTGGTTATTTTG
1 TATTTGTCAAAAATAGTGGTTATTTTG
*
6863525 TGTTTGTCAAAAAT-GATGGTT-TCCTTTG
1 TATTTGTCAAAAATAG-TGGTTAT--TTTG
6863553 TATTTGT
1 TATTTGT
6863560 TAAATATGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 2 0.07
27 18 0.60
28 10 0.33
ACGTcount: A:0.24, C:0.06, G:0.19, T:0.50
Consensus pattern (27 bp):
TATTTGTCAAAAATAGTGGTTATTTTG
Found at i:6863677 original size:20 final size:20
Alignment explanation
Indices: 6863652--6863690 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6863642 GGCTCTCTCC
6863652 TCCCTCTCAAGTATCCCTCA
1 TCCCTCTCAAGTATCCCTCA
**
6863672 TCCCTCTCTTGTATCCCTC
1 TCCCTCTCAAGTATCCCTC
6863691 TTCAATTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.46, G:0.05, T:0.36
Consensus pattern (20 bp):
TCCCTCTCAAGTATCCCTCA
Found at i:6866170 original size:21 final size:22
Alignment explanation
Indices: 6866141--6866186 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
6866131 TGTTCAGACA
** *
6866141 AGTAGTACTCCGCAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
6866163 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
6866184 AGT
1 AGT
6866187 TTCAATAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:6868128 original size:28 final size:27
Alignment explanation
Indices: 6868069--6868158 Score: 78
Period size: 28 Copynumber: 3.4 Consensus size: 27
6868059 CACCCATTTG
* *
6868069 TTTGTCAAAAATGATGGTTATTTTATG
1 TTTGTCAAAAATGGTGGTTATTTTATA
*
6868096 TTTGTCAAAAATGGTGGTT-TCCTTTGTA
1 TTTGTCAAAAATGGTGGTTAT--TTTATA
* * * *
6868124 TTTGTCAAATATGGAGGCT-TGTT-TA
1 TTTGTCAAAAATGGTGGTTATTTTATA
6868149 TTTGTCAAAA
1 TTTGTCAAAA
6868159 TTTATGGCTA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
25 11 0.21
26 3 0.06
27 18 0.34
28 21 0.40
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.46
Consensus pattern (27 bp):
TTTGTCAAAAATGGTGGTTATTTTATA
Found at i:6870504 original size:18 final size:18
Alignment explanation
Indices: 6870477--6870512 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6870467 ACTTTTATTT
* *
6870477 TAAATCAAATTCAAACTA
1 TAAATAAAATTAAAACTA
6870495 TAAATAAAATTAAAACTA
1 TAAATAAAATTAAAACTA
6870513 CGAATTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAATAAAATTAAAACTA
Found at i:6873095 original size:210 final size:206
Alignment explanation
Indices: 6872704--6873096 Score: 608
Period size: 210 Copynumber: 1.9 Consensus size: 206
6872694 TCTCTCTCTC
* *
6872704 TATATATATATACATTAAACATATATATGTAGCTTAAAAGGTGGAGTCAACAAATAAGTTAAAAT
1 TATATATATACACATTAAACATATATATGTAGCTTAAAAGGTGGAGCCAACAAATAAGTTAAAAT
** *
6872769 CTAAAAAAAAGTTGAAAAGTGAGTTTTTTAACATAAATAATATATAAAAAAAAGATGATATAAAA
66 AAAAAAAAAAGTTGAAAAGTGAATTTTTTAACATAAATAATATATAAAAAAAAGATGATATAAAA
* * *
6872834 TTATTTTAGATATTAATGATGCAATTAAAATTTTATTACTTTTAATATTAATTATATATTGAGAA
131 TTATTTTAGATATTAATGACGCAATTAAAATTTTATTACCTCTAATATTAATTATATATTGAGAA
6872899 GTATTTATTAT
196 GTATTTATTAT
*
6872910 TATATATATACACATTAAACATGTATATGTAGCTTAAAAGGTGGAGCCAACAAATAAGTTAAAAG
1 TATATATATACACATTAAACATATATATGTAGCTTAAAAGGTGGAGCCAACAAATAAGTTAAAA-
**
6872975 TAAAAAAAAAAAAAAGTTGAAAAGTGAATTTTTTAACATAAATAATA-ATAGTAAAAAGATGATA
65 T----AAAAAAAAAAGTTGAAAAGTGAATTTTTTAACATAAATAATATATAAAAAAAAGATGATA
* **
6873039 TAAAATTATTTTATATATTAATGACGTTATTAAAATTTTATTACCTCTAATATTAATT
126 TAAAATTATTTTAGATATTAATGACGCAATTAAAATTTTATTACCTCTAATATTAATT
6873097 TTTTAAGTAT
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
206 61 0.36
207 1 0.01
210 67 0.40
211 39 0.23
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.36
Consensus pattern (206 bp):
TATATATATACACATTAAACATATATATGTAGCTTAAAAGGTGGAGCCAACAAATAAGTTAAAAT
AAAAAAAAAAGTTGAAAAGTGAATTTTTTAACATAAATAATATATAAAAAAAAGATGATATAAAA
TTATTTTAGATATTAATGACGCAATTAAAATTTTATTACCTCTAATATTAATTATATATTGAGAA
GTATTTATTAT
Found at i:6884003 original size:10 final size:10
Alignment explanation
Indices: 6883988--6884069 Score: 78
Period size: 10 Copynumber: 7.7 Consensus size: 10
6883978 CCTTTACACC
6883988 CAAAAAAAAA
1 CAAAAAAAAA
6883998 CAAAAAAAAA
1 CAAAAAAAAA
*
6884008 TAAAAAAAATA
1 CAAAAAAAA-A
6884019 -AAAAAAAAA
1 CAAAAAAAAA
6884028 CAAAACAAAAAAA
1 C--AA-AAAAAAA
6884041 CAAAAAAAAA
1 CAAAAAAAAA
6884051 -AGAAAAAAATA
1 CA-AAAAAAA-A
6884062 GCAAAAAA
1 -CAAAAAA
6884070 TAGAAGGGTC
Statistics
Matches: 62, Mismatches: 1, Indels: 16
0.78 0.01 0.20
Matches are distributed among these distances:
9 2 0.03
10 40 0.65
11 4 0.06
12 7 0.11
13 9 0.15
ACGTcount: A:0.87, C:0.07, G:0.02, T:0.04
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:6884067 original size:35 final size:35
Alignment explanation
Indices: 6883989--6884059 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
6883979 CTTTACACCC
*
6883989 AAAAA-AAAACAAAAAAAAATAAAAAAAATAAAAA
1 AAAAACAAAACAAAAAAAAATAAAAAAAAGAAAAA
6884023 AAAAACAAAACAAAAAAACAA-AAAAAAAAGAAAAA
1 AAAAACAAAACAAAAAAA-AATAAAAAAAAGAAAAA
6884058 AA
1 AA
6884060 TAGCAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 5 0.15
35 27 0.79
36 2 0.06
ACGTcount: A:0.90, C:0.06, G:0.01, T:0.03
Consensus pattern (35 bp):
AAAAACAAAACAAAAAAAAATAAAAAAAAGAAAAA
Found at i:6884069 original size:1 final size:1
Alignment explanation
Indices: 6883989--6884059 Score: 79
Period size: 1 Copynumber: 71.0 Consensus size: 1
6883979 CTTTACACCC
* * * * * * *
6883989 AAAAAAAAACAAAAAAAAATAAAAAAAATAAAAAAAAAACAAAACAAAAAAACAAAAAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6884054 AAAAAA
1 AAAAAA
6884060 TAGCAAAAAA
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.90, C:0.06, G:0.01, T:0.03
Consensus pattern (1 bp):
A
Found at i:6885331 original size:29 final size:29
Alignment explanation
Indices: 6885289--6886119 Score: 1154
Period size: 28 Copynumber: 28.9 Consensus size: 29
6885279 AATGTTCATC
*
6885289 CCTTTCAAAGCCCACAAGTCAGTAGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6885318 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885347 CCTTTCAAAGCCCATAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885376 CCTTTTAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6885404 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6885433 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885462 CCTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885491 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885519 CCTTTCAAAGCCCACAACTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6885547 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6885576 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * *
6885605 CTTTTCAAAGCTCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885633 CCTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885661 CCTTTCAAAGCCCACAAGTTAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6885690 CCTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
6885719 CTTTTCAAAGCCCACAAATCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885748 CTTTTCAAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885776 CCTTTCAAAGCCCACAAGTTAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
** *
6885804 CCTTTCAGCGCCCACAAGTCAGTGGTAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885832 CCTTTCGAAGCCCACAAGTCAGTGGCAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* * * *
6885860 CATTGCGAAGCCCACAATTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885889 -CTTTCAAAGCCCACAAGTCAGTGACAC-
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
*
6885916 CCTTTTAAAGCCCGTACAAGTCAGTGGCACT
1 CCTTTCAAAGCCC--ACAAGTCAGTGGCACT
* * * *
6885947 CCTTTTAAAGCTCACGCAAGTTAGTGGTAC-
1 CCTTTCAAAGC-C-CACAAGTCAGTGGCACT
*
6885977 CTTTTCAAAGCCCACAAGTCAGTGGCACT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
6886006 -CTTTCAAAGCCCACAAGTCAGTGGCA-T
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
6886033 CCTTTCAAAGCCCACGAGTTAGTGGCA-T
1 CCTTTCAAAGCCCACAAGTCAGTGGCACT
* *
6886061 TCTTTCAAAGCCCACGCACGTCAGTGGCAC-
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCACT
* *
6886091 CCTTTTAAAGCCCATGCAAGTCAATGGCA
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCA
6886120 ACCCTTTTCA
Statistics
Matches: 727, Mismatches: 60, Indels: 29
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.00
28 342 0.47
29 302 0.42
30 57 0.08
31 23 0.03
32 1 0.00
33 1 0.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (29 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCACT
Found at i:6885745 original size:257 final size:256
Alignment explanation
Indices: 6885288--6886131 Score: 1237
Period size: 257 Copynumber: 3.3 Consensus size: 256
6885278 GAATGTTCAT
* *
6885288 CCCTTTCAAAGCCCACAAGTCAGTAGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* * *
6885353 AAAGCCCATAAGTCAGTGGCACTCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA
65 AAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA
*
6885418 CAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAATCA
129 CAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCA
* *
6885483 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAACTCAGTGGCA
194 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCA
6885546 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
6885611 AAAGCTCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
65 AAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAC
*
6885676 AAGTTAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAG
130 AAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAG
6885741 TGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCA
195 TGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCA
** * * * * *
6885803 CCCTTTCAGCGCCCACAAGTCAGTGGTACCCTTTCGAAGCCCACAAGTCAGTGGCAC-CATTGCG
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
* * *
6885867 AAGCCCACAA-TTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGACACCCTTTTAAAGCCCGT
66 AAGCCCACAAGTT-AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCC--
* * * * *
6885931 ACAAGTCAGTGGCACTCCTTTTAAAGCTCACGCAAGTTAGTGGTAC-CTTTTCAAAGCCCACAAG
128 ACAAGTCAGTGGCACTCCTTTCAAAGC-C-CACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAA
* *
6885995 TCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTAGTGGC
191 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGC
6886059 A
256 A
** * * * *
6886060 TTCTTTCAAAGCCCACGCACGTCAGTGGCACCCTTTTAAAGCCCATGCAAGTCAATGGCAACCCT
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGC-ACTCT
6886125 TTTCAAA
61 TTTCAAA
6886132 TCACCACTGT
Statistics
Matches: 532, Mismatches: 43, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
254 2 0.00
255 58 0.11
256 27 0.05
257 277 0.52
258 112 0.21
259 37 0.07
261 11 0.02
262 2 0.00
263 6 0.01
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.22
Consensus pattern (256 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
AAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACA
AGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGT
GGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCA
Found at i:6886635 original size:20 final size:20
Alignment explanation
Indices: 6886609--6886681 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
6886599 ATACCCTGAG
6886609 GTATCGATACATTTTTCAAT
1 GTATCGATACATTTTTCAAT
* * * *
6886629 ATATCGATACATGTATGAAT
1 GTATCGATACATTTTTCAAT
* * *
6886649 GTATCGATATATTCTACAAT
1 GTATCGATACATTTTTCAAT
6886669 GTATCGATACATT
1 GTATCGATACATT
6886682 ATGTCTTTTT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (20 bp):
GTATCGATACATTTTTCAAT
Found at i:6886674 original size:40 final size:39
Alignment explanation
Indices: 6886609--6886684 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
6886599 ATACCCTGAG
* *
6886609 GTATCGATACATTTTTCAATATATCGATACATGTATGAAT
1 GTATCGATACATTCTACAATATATCGATACAT-TATGAAT
* *
6886649 GTATCGATATATTCTACAATGTATCGATACATTATG
1 GTATCGATACATTCTACAATATATCGATACATTATG
6886685 TCTTTTTACC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.12
40 28 0.88
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (39 bp):
GTATCGATACATTCTACAATATATCGATACATTATGAAT
Found at i:6890072 original size:20 final size:20
Alignment explanation
Indices: 6890025--6890099 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
6890015 AAAAAGACAT
*
6890025 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
6890044 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
6890065 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
6890085 AATGTATCGATACAT
1 AATGTATCGATACAT
6890100 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:6890093 original size:40 final size:39
Alignment explanation
Indices: 6890022--6890099 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
6890012 GGTAAAAAGA
* *
6890022 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
6890061 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
6890100 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:6890589 original size:45 final size:46
Alignment explanation
Indices: 6890473--6890596 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 46
6890463 AGATGAGAGG
** *
6890473 AGTGCCAATGTGCCAATTCAAAGCCAGCGACATTGGGCTAAGGGAAA
1 AGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAA-GGAAA
* *
6890520 AGTGGACCAATGTGCTGACTCAAGGCCAGCGACATTGGGCTTA-GAAA
1 AGT-G-CCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGAAA
* * *
6890567 GGTGCCAATATGCTGATTCAAGGCTAGCGA
1 AGTGCCAATGTGCTGATTCAAGGCCAGCGA
6890597 TATCGGACTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
45 23 0.35
46 1 0.02
47 9 0.14
48 1 0.02
49 32 0.48
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (46 bp):
AGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGAAA
Found at i:6890667 original size:32 final size:32
Alignment explanation
Indices: 6890627--6891276 Score: 579
Period size: 32 Copynumber: 21.4 Consensus size: 32
6890617 AAAATGGTGG
* *
6890627 TTTGAAAAGGGTTGCCACTGACTTGCGTGGGT
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* * * *** * *
6890659 TTTTAAAAGGGTTTCCACCGA-AAATATGGAC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* *
6890690 TTTTG-AAAGAGGTTCCCA-TCAACTTGTGTGGGC
1 -TTTGAAAAG-GGTTGCCACT-GACTTGTGTGGGC
*
6890723 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* * *
6890755 TTTGAAATA-GGTTACCACCGACTTGTGTGGGG
1 TTTGAAA-AGGGTTGCCACTGACTTGTGTGGGC
* *
6890787 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* * **
6890819 TTTGAAATGGGTTGCCACCGACTTACGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* *
6890851 TTTGAAATA--G-TGCCACTAACTTATGTGGGC
1 TTTGAAA-AGGGTTGCCACTGACTTGTGTGGGC
* *
6890881 TTTG-AAATGG-TGCCACTAAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
*
6890909 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* *
6890941 TTTG-CAATGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
*
6890969 TTCG-AAAGGG-TGCCACTGAC---TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* *
6890996 TCTG-AAAGGG-TGCCACTAAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
6891024 TTTG-AAAGGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
*
6891052 TTTGAAAAGAG-TGCCACTGA-TT-TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
*
6891081 TTTGAAAAGAG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
6891110 TTTG-AAAGGAG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGG-GTTGCCACTGACTTGTGTGGGC
*
6891139 TTTG-AAAGGG-TGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* * *
6891169 TTTGCAAAGTGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* *
6891201 TTTGAAAAGTGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
* *
6891233 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
*
6891265 TTTGAAATGGGT
1 TTTGAAAAGGGT
6891277 ACCACAGAGT
Statistics
Matches: 540, Mismatches: 54, Indels: 48
0.84 0.08 0.07
Matches are distributed among these distances:
27 24 0.04
28 87 0.16
29 92 0.17
30 60 0.11
31 18 0.03
32 249 0.46
33 10 0.02
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (32 bp):
TTTGAAAAGGGTTGCCACTGACTTGTGTGGGC
Found at i:6891426 original size:27 final size:27
Alignment explanation
Indices: 6891273--6891766 Score: 745
Period size: 27 Copynumber: 18.0 Consensus size: 27
6891263 GCTTTGAAAT
* * *
6891273 GGGTACCACAGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
* *
6891301 GAGTGCCACGGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
*
6891329 GGGTGCCACGGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
* *
6891357 GGGTGCCACAGAGTTGTGGACTCAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
6891384 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
6891412 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6891439 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6891466 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
6891493 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
6891520 GGGTGTCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
6891547 GGGTGCCACGGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6891574 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
6891602 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
6891629 GAGATGCCACGGAGTTATAGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
6891657 GGGTGCCACGGAGTTGTAGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6891684 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
6891711 GGGATGCCACGGAATTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
6891739 GGGTGCCACGGAGTTGTGGACTTTAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6891766 G
1 G
6891767 AGGTCATAGT
Statistics
Matches: 432, Mismatches: 30, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
27 262 0.61
28 170 0.39
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.23
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:6893136 original size:14 final size:13
Alignment explanation
Indices: 6893082--6893135 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
6893072 CCCTTTTTTA
6893082 TTTTGCTTTTGCAC
1 TTTTGCTTTTG-AC
*
6893096 TTTTGCTTTTCA-
1 TTTTGCTTTTGAC
6893108 TTTT--TTTGTG-C
1 TTTTGCTTT-TGAC
6893119 TTTTGCTTTTGAC
1 TTTTGCTTTTGAC
6893132 TTTT
1 TTTT
6893136 TTTTGTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
10 3 0.09
11 5 0.15
12 6 0.18
13 9 0.27
14 10 0.30
ACGTcount: A:0.06, C:0.15, G:0.13, T:0.67
Consensus pattern (13 bp):
TTTTGCTTTTGAC
Found at i:6899295 original size:22 final size:23
Alignment explanation
Indices: 6899249--6899304 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
6899239 TGGACATGTT
6899249 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
6899272 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
6899294 AAAAATGCATG
1 AAAAATGCATG
6899305 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 13 0.39
23 20 0.61
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:6900264 original size:20 final size:20
Alignment explanation
Indices: 6900217--6900291 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
6900207 AAAAAGACAT
*
6900217 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
6900236 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
6900257 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
6900277 AATGTATCGATACAT
1 AATGTATCGATACAT
6900292 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:6900285 original size:40 final size:39
Alignment explanation
Indices: 6900214--6900291 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
6900204 GGTAAAAAGA
* *
6900214 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
6900253 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
6900292 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:6900834 original size:21 final size:21
Alignment explanation
Indices: 6900810--6900851 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6900800 TATAGAAAGT
*
6900810 AAAA-GTATTAAATATTTTTAA
1 AAAATGTAATAAA-ATTTTTAA
6900831 AAAATGTAATAAAATTTTTAA
1 AAAATGTAATAAAATTTTTAA
6900852 TTACAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAAATGTAATAAAATTTTTAA
Found at i:6901442 original size:27 final size:26
Alignment explanation
Indices: 6901407--6901457 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
6901397 GTATTCGTAT
* *
6901407 TATTTTATATTATAATTAAATTTAAAA
1 TATTATATATT-TAAATAAATTTAAAA
6901434 TATTATATATTTAAATAAATTTAA
1 TATTATATATTTAAATAAATTTAA
6901458 TACGTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TATTATATATTTAAATAAATTTAAAA
Found at i:6901986 original size:15 final size:15
Alignment explanation
Indices: 6901941--6901987 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
6901931 CAATGTATTA
6901941 TATACTTATATAAATT
1 TATA-TTATATAAATT
*
6901957 TATATAATA-ATAATT
1 TATATTATATA-AATT
*
6901972 TATTTTATATAAATT
1 TATATTATATAAATT
6901987 T
1 T
6901988 TGACATGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
14 1 0.04
15 20 0.77
16 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATTATATAAATT
Found at i:6906075 original size:23 final size:23
Alignment explanation
Indices: 6906049--6906094 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
6906039 TTAATTACTT
*
6906049 TAATT-GATAATACATTATTAATA
1 TAATTAGATAATA-ATTATAAATA
*
6906072 TAATTATATAATAATTATAAATA
1 TAATTAGATAATAATTATAAATA
6906095 CTTACTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TAATTAGATAATAATTATAAATA
Found at i:6908438 original size:14 final size:12
Alignment explanation
Indices: 6908413--6908450 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
6908403 CAGTAGCAAG
6908413 AAAA-AGAAAAA
1 AAAAGAGAAAAA
*
6908424 AATAGAGAAAAA
1 AAAAGAGAAAAA
6908436 AAAAGAGAAAAA
1 AAAAGAGAAAAA
6908448 AAA
1 AAA
6908451 TAAAAGACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 3 0.12
12 21 0.88
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (12 bp):
AAAAGAGAAAAA
Found at i:6908828 original size:2 final size:2
Alignment explanation
Indices: 6908823--6908864 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
6908813 TGTGTGTGTG
*
6908823 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6908865 CATTTTGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:6909456 original size:79 final size:79
Alignment explanation
Indices: 6909250--6909457 Score: 254
Period size: 79 Copynumber: 2.6 Consensus size: 79
6909240 TTATTACCTC
* * * *
6909250 AGGAGCATGCTGATATTTTCATATCGAGATATGTGCATTAAAGCCATTTTAGTGAATTTTATGAG
1 AGGAGCATGTTGATATTTTCATATCGAGACATGTGCATTAAGGCCATTTTAGTGAATTTCATGAG
* * *
6909315 ATATTTGAGTCCTT
66 AAATCTAAGTCCTT
* * * *
6909329 AGAAGCATGTTGGTATTTTCATATCGAGACATGTGCATTAAGGTCATTTTAGTGAGTTTCATGAG
1 AGGAGCATGTTGATATTTTCATATCGAGACATGTGCATTAAGGCCATTTTAGTGAATTTCATGAG
*
6909394 AAATCTAAGTCTTT
66 AAATCTAAGTCCTT
* * * * * *
6909408 AGGAGCATGTTAATATTTTCACATCGAGGCATATGCAATATGGCCATTTT
1 AGGAGCATGTTGATATTTTCATATCGAGACATGTGCATTAAGGCCATTTT
6909458 TGAAAGTTTC
Statistics
Matches: 108, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
79 108 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (79 bp):
AGGAGCATGTTGATATTTTCATATCGAGACATGTGCATTAAGGCCATTTTAGTGAATTTCATGAG
AAATCTAAGTCCTT
Found at i:6909573 original size:78 final size:78
Alignment explanation
Indices: 6909471--6909765 Score: 260
Period size: 78 Copynumber: 3.9 Consensus size: 78
6909461 AAGTTTCTTG
* * * * * *
6909471 TTAATACCAAGTCTTTAAGGTCATATGAATACTTTCATATTGATACATGTTCATTATGGTCATTT
1 TTAAAACCGAGTCTTTAAGATCATATGAATATTTTCATATTGATACATGTCCATTAAGGTCATTT
6909536 AGGTAATAGTACA
66 AGGTAATAGTACA
*
6909549 TTAAAACCGAGTCTTTAAGATCATATGAATATTTTCTTA-T--TA-A--TCCATTAAGGTCATTT
1 TTAAAACCGAGTCTTTAAGATCATATGAATATTTTCATATTGATACATGTCCATTAAGGTCATTT
6909608 AGGTAATAGTACA
66 AGGTAATAGTACA
* * * * * * * *
6909621 TTAAAGCTGAG----TAAGGTCATGT-AGATATTTTTATGTTGATACATGTCTATTAAAGTCATT
1 TTAAAACCGAGTCTTTAAGATCATATGA-ATATTTTCATATTGATACATGTCCATTAAGGTCATT
*
6909681 TAGGTAAT-GATATA
65 TAGGTAATAG-TACA
* * * *
6909695 TTAAAA-CTAGGTCTCTAA-AGTTATATGAGTATTTTCATATTGATACATGTCCATTAAGGTC-T
1 TTAAAACCGA-GTCTTTAAGA-TCATATGAATATTTTCATATTGATACATGTCCATTAAGGTCAT
6909757 CTTAGGTAA
64 -TTAGGTAA
6909766 AAACTGAGAG
Statistics
Matches: 173, Mismatches: 28, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
67 1 0.01
68 17 0.10
69 1 0.01
71 2 0.01
72 37 0.21
73 2 0.01
74 31 0.18
75 2 0.01
77 2 0.01
78 77 0.45
79 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (78 bp):
TTAAAACCGAGTCTTTAAGATCATATGAATATTTTCATATTGATACATGTCCATTAAGGTCATTT
AGGTAATAGTACA
Found at i:6911273 original size:222 final size:222
Alignment explanation
Indices: 6910881--6911333 Score: 834
Period size: 222 Copynumber: 2.0 Consensus size: 222
6910871 TTGTTCAGAA
* *
6910881 TGAGACTAAGTCATTAAAATAAATCGCTCGTCTAACTTTTCTTATATTGCTGCACTGAAATAGTT
1 TGAGATTAAGTCATTAAAATAAATCGCTCGTCTAACTTTTCTTATATAGCTGCACTGAAATAGTT
6910946 AAGAGATTAAAATCACTATCTAATCTTTTTAGAGTAGATGTGATTAAATACCTATTAAAACTGAT
66 AAGAGATTAAAATCACTATCTAATCTTTTTAGAGTAGATGTGATTAAATACCTATTAAAACTGAT
* *
6911011 GTATCACATTCGTGTTTAGCATGTTATTACAAAAATGATGGATGGTGAAATCTTTTAAAGCTCCA
131 GTATCACATTCATGTTTAGCATGTTATTACAAAAATGATGGATGGTGAAATCTTCTAAAGCTCCA
6911076 TTTGATGAGTAACAAGATTGGTTCTAG
196 TTTGATGAGTAACAAGATTGGTTCTAG
* *
6911103 TGAGATTAAGTCATTAGAATAAATCGCTCGTCTAACTTTTCTTATATAGCTGTACTGAAATAGTT
1 TGAGATTAAGTCATTAAAATAAATCGCTCGTCTAACTTTTCTTATATAGCTGCACTGAAATAGTT
*
6911168 AAGAGATTAAAATCACTATCTAATCTTTTTAGAGTAGATGTGATTAAATATCTATTAAAACTGAT
66 AAGAGATTAAAATCACTATCTAATCTTTTTAGAGTAGATGTGATTAAATACCTATTAAAACTGAT
*
6911233 GTATCACATTCATGTTTAGCATGTTATTACAAAAATGATGGATGGTGAAATCTTCTAGAGCTCCA
131 GTATCACATTCATGTTTAGCATGTTATTACAAAAATGATGGATGGTGAAATCTTCTAAAGCTCCA
6911298 TTTGATGAGTAACAAGATTGGTTCTAG
196 TTTGATGAGTAACAAGATTGGTTCTAG
6911325 TGAGATTAA
1 TGAGATTAA
6911334 ACAACAGTGA
Statistics
Matches: 223, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (222 bp):
TGAGATTAAGTCATTAAAATAAATCGCTCGTCTAACTTTTCTTATATAGCTGCACTGAAATAGTT
AAGAGATTAAAATCACTATCTAATCTTTTTAGAGTAGATGTGATTAAATACCTATTAAAACTGAT
GTATCACATTCATGTTTAGCATGTTATTACAAAAATGATGGATGGTGAAATCTTCTAAAGCTCCA
TTTGATGAGTAACAAGATTGGTTCTAG
Found at i:6912453 original size:28 final size:29
Alignment explanation
Indices: 6912403--6912468 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
6912393 TAAGAGCTTT
* *
6912403 TTAATTTC-AGTTAAAAATGAAATTTTAA
1 TTAATATCAAGTTAAAAATGAAATTTAAA
*
6912431 TTAATATCAAGTTTAAAAT-AAATTTAAA
1 TTAATATCAAGTTAAAAATGAAATTTAAA
*
6912459 TAAATATCAA
1 TTAATATCAA
6912469 TCGAGAACGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 24 0.73
29 9 0.27
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (29 bp):
TTAATATCAAGTTAAAAATGAAATTTAAA
Found at i:6913572 original size:20 final size:20
Alignment explanation
Indices: 6913547--6913584 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6913537 TTTATATTAA
*
6913547 AAATTACATATATAATATAT
1 AAATTAAATATATAATATAT
*
6913567 AAATTAAATATATTATAT
1 AAATTAAATATATAATAT
6913585 TAATCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATTAAATATATAATATAT
Found at i:6913618 original size:125 final size:117
Alignment explanation
Indices: 6913488--6913755 Score: 306
Period size: 117 Copynumber: 2.2 Consensus size: 117
6913478 CCTATCGTGA
*
6913488 TTATTATATTATTTTTATATTTATTAAAAAAT-TTATATTTATATCATATTTTATATTAAAAATT
1 TTATTATATTATTTTTATATTTATT-AAAAATGTTATATTAATATCATA----A-A--AAAAA-T
* * *
6913552 ACATATATAATATATAAATTAAATATATTATATTAATCATATTTAAACATATCTATTATGT
57 ACATATATAATACATAAATTAAATATATTATATTAATCATATTTAAACATATCTATCATAT
* * * *
6913613 TTATTATATTGTTATTT-TATTTATTAAAAATGTTATATTAATATCATAAAATATATATATATAT
1 TTATTATATTATT-TTTATATTTATTAAAAATGTTATATTAATATCATAAAAAAAATACATATAT
* * * *
6913677 CATACATATATTAAATATATTATATTAATTATATTTAAATATATCTATCATAT
65 AATACATAAATTAAATATATTATATTAATCATATTTAAACATATCTATCATAT
6913730 TTATTATATTATAATTTTATATTTAT
1 TTATTATATTAT--TTTTATATTTAT
6913756 ATTTATGTTA
Statistics
Matches: 125, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
117 65 0.52
118 6 0.05
119 8 0.06
120 1 0.01
121 1 0.01
124 6 0.05
125 35 0.28
126 3 0.02
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (117 bp):
TTATTATATTATTTTTATATTTATTAAAAATGTTATATTAATATCATAAAAAAAATACATATATA
ATACATAAATTAAATATATTATATTAATCATATTTAAACATATCTATCATAT
Found at i:6913694 original size:20 final size:20
Alignment explanation
Indices: 6913653--6913696 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6913643 TGTTATATTA
*
6913653 ATATCATAAAATATATATAT
1 ATATCATAAAATATATAAAT
*
6913673 ATATCAT-ACATATATTAAAT
1 ATATCATAAAATATA-TAAAT
6913693 ATAT
1 ATAT
6913697 TATATTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCATAAAATATATAAAT
Found at i:6913767 original size:28 final size:28
Alignment explanation
Indices: 6913691--6913787 Score: 74
Period size: 28 Copynumber: 3.4 Consensus size: 28
6913681 CATATATTAA
* * *
6913691 ATATATTATATTAATTATATTTAAATATAT
1 ATAT-TTATATTTATTATA-TTAAATTTCT
* *
6913721 CTA-TCATATTTATTATATTATAATTT-T
1 ATATTTATATTTATTATATTA-AATTTCT
**
6913748 ATATTTATATTTATGT-TATTACCTTTCT
1 ATATTTATATTTAT-TATATTAAATTTCT
6913776 ATATTTATATTT
1 ATATTTATATTT
6913788 TATTCAAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
27 9 0.16
28 43 0.78
29 1 0.02
30 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (28 bp):
ATATTTATATTTATTATATTAAATTTCT
Found at i:6916830 original size:24 final size:22
Alignment explanation
Indices: 6916774--6916822 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
6916764 TGGACATGTT
6916774 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
6916796 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
6916818 AAAAA
1 AAAAA
6916823 AATGCATGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.67, C:0.08, G:0.08, T:0.16
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:6917718 original size:20 final size:20
Alignment explanation
Indices: 6917693--6917807 Score: 99
Period size: 20 Copynumber: 5.7 Consensus size: 20
6917683 TTTTAACTAG
*
6917693 ATGTATCGATACATTATTCA
1 ATGTATCGATACATTATACA
***
6917713 ATGTATCGATACATCTAGGTA
1 ATGTATCGATACAT-TATACA
* * *
6917734 ATATATCGATACATTCTAGA
1 ATGTATCGATACATTATACA
*
6917754 ATATATCGATACATTCATAC-
1 ATGTATCGATACATT-ATACA
* *
6917774 ATGTATCGATATATTGA-AAA
1 ATGTATCGATACATT-ATACA
6917794 ATGTATCGATACAT
1 ATGTATCGATACAT
6917808 CAGGGTAAAA
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.01
20 58 0.75
21 18 0.23
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTATACA
Found at i:6918616 original size:28 final size:28
Alignment explanation
Indices: 6918365--6920711 Score: 2044
Period size: 28 Copynumber: 81.4 Consensus size: 28
6918355 TTTTTTAAAA
* *
6918365 AAAGGGTGCCACTAACTTATGTGGGCCTTG
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTG
** *
6918395 AAAAGAATTGCCACCGACTCGTGTGGGCTTTG
1 -AAAG-GGTGCCACTGACT--TGTGGGCTTTG
*
6918427 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA-GGG-TGCCACTGAC-T-TGTGGGCTTTG
* *
6918459 AAAAGGGTTCCCACCGACTTGTGTGGGCTTTG
1 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
*
6918491 AAATGGGTTGCCACCGACTTGTGTGGGCTTTGG
1 AAA-GGG-TGCCACTGAC-T-TGTGGGCTTT-G
* *
6918524 AATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
*
6918555 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
6918587 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6918615 AAAAGAGTGCCACTAACTTGTGGGCTTTA
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6918644 AAAGGGTGCCACTAACTTGCGTGGGCTTTG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
*
6918674 AAAGGGGTGCCACTAACTTGTGGGCTTTG
1 AAA-GGGTGCCACTGACTTGTGGGCTTTG
*
6918703 AAAGGGTGCCACCGACTTGTGTGGGCTTTG
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTG
* *
6918733 AAAGGATGCCACTGACTTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* *
6918761 AAAGAGTGCCACTGACTCGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6918789 AAAAGGTACCACTGACTTGCGTGAGCTTTA
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
*
6918819 AAAGGAGTGCCACTGACTTGTGTGGGCTTTA
1 AAAGG-GTGCCACTGAC-T-TGTGGGCTTTG
6918850 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6918878 AAAGAGTGCCACTGAATTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6918906 CAATGGTGCCACTGACTTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6918934 AAAGGGTGCCACTGACTTGTGGGCTCTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6918962 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
6918990 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* *
6919018 AAAAGAGTGCCACTGATTTGTGGGCTTTG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919047 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919076 AAAGGAGTGCCACTGACTTGTGTGGGCTTTA
1 AAAGG-GTGCCACTGAC-T-TGTGGGCTTTG
6919107 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
** * *
6919135 AAAAAGTGCCACTGAATTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6919163 CAATGGTGCCACTGACTTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
6919191 AAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
6919221 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919250 AAAGGGTGCCACTGACTTGTGAGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6919278 AAAAGAGTGCCACTAACTTGTGGGCTTTA
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919307 AAAGGGTGCCACTAACTTGCGTGGGCTTTG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
*
6919337 AAAGGGGTGCCACTAACTTGTGGGCTTTG
1 AAA-GGGTGCCACTGACTTGTGGGCTTTG
*
6919366 AAAGGGTGCCACCGACTTGTGTGGGCTTTG
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTG
*
6919396 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* *
6919424 AAAGAGTGCCACTGACTCGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6919452 AAAAGGTACCACTGACTTGCGTGAGCTTTA
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
*
6919482 AAAGGAGTGCCACTGACTTGTGTGGGCTTTA
1 AAAGG-GTGCCACTGAC-T-TGTGGGCTTTG
*
6919513 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6919541 AAAGAGTGCCATTGAATTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* *
6919569 CAATGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919597 AAAGGGTGCCACTGACTTGTGGGCTCTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919625 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919653 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * **
6919681 AAAAGAGTGCCACTGATTTGTGGGCTTCAA
1 -AAAGGGTGCCACTGACTTGTGGGCTT-TG
*
6919711 AAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919739 AAAGGAGTGCCACTGACTTGTGTGGGCTTTA
1 AAAGG-GTGCCACTGAC-T-TGTGGGCTTTG
*
6919770 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6919798 AAAGAGTGCCACTGAATTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6919826 CAATGGTGCCACTGACTTGTGGGCTTCG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919854 AAAGGGTGCTACTGACTTGCGTGGGCTTTG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
6919884 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
*
6919913 AAAGGGTGCCACTGACTTGTGGGTTTTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
6919941 AAAAGAGTGCCACTAACTTGTGGGCTTTA
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG
* *
6919970 AAAGGGTGCCACTAACTTACGTTGGCTTTG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTG
*
6920000 AAAGGGGTGCCACTTACTTGTGGGCTTTG
1 AAA-GGGTGCCACTGACTTGTGGGCTTTG
* *
6920029 AAAGGGTGCCACCGACTTGTGTGGGCTTTAA
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTT-G
* *
6920060 AAAGTGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAG-GGTGCCACTGAC-T-TGTGGGCTTTG
*
6920091 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA-GGG-TGCCACTGAC-T-TGTGGGCTTTG
* * ** *
6920123 AAATGGGTGCCACAGAGTTGTGGATTTTA
1 AAA-GGGTGCCACTGACTTGTGGGCTTTG
* * * ** *
6920152 AAAGAGTGCCACGGAGTTGTGGATTTTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * ** *
6920180 AAAGGGTGCCACGGAGTTGTGGATTTTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * ** *
6920208 AAAGGGTGCCACGGAGTTGTGGATTTTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * **
6920236 AAAGGGTGCCACAGAGTTATGGAC-TCA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * *
6920263 AAAGAGATGCCACGGAGTTATGGAC-TTA
1 AAAG-GGTGCCACTGACTTGTGGGCTTTG
* * * *
6920291 AAAGGGTGCCACGGAGTTGTGGTC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
6920318 AAAGGATGCCACGGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920345 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * *
6920372 AAAGAGTGCCACAGAGTTGTAGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920399 AAAGGGTGCCACGGAGTTGTGGTC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920426 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920454 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * *
6920481 AAAGAGATGCCACAGAGTTATGGAC-TTA
1 AAAG-GGTGCCACTGACTTGTGGGCTTTG
* * * * *
6920509 AAATGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920536 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
** * * * * *
6920563 AAAGAATGCTACGGAGTTGTGGACTTTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920591 AAAGGATGCCAC-GAAGTTGTGGAC-TTA
1 AAAGGGTGCCACTG-ACTTGTGGGCTTTG
* * * *
6920618 AAAGGGATGCCACGGAGTTGTGGAC-TTA
1 AAAGGG-TGCCACTGACTTGTGGGCTTTG
* * * *
6920646 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
6920673 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGGTGCCACTGACTTGTGGGCTTTG
6920700 AAAGGGTGCCAC
1 AAAGGGTGCCAC
6920712 GGAGTTGTAA
Statistics
Matches: 2060, Mismatches: 193, Indels: 130
0.86 0.08 0.05
Matches are distributed among these distances:
27 290 0.14
28 893 0.43
29 277 0.13
30 191 0.09
31 191 0.09
32 209 0.10
33 9 0.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (28 bp):
AAAGGGTGCCACTGACTTGTGGGCTTTG
Found at i:6918838 original size:145 final size:140
Alignment explanation
Indices: 6918365--6920711 Score: 1977
Period size: 145 Copynumber: 16.3 Consensus size: 140
6918355 TTTTTTAAAA
* * ** *
6918365 AAAGGGTGCCACTAACTTATGTGGGCCTTGAAAAGAATTGCCACCGACTCGTGTGGGCTTTGAAA
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTG-AAAG-GGTGCCACTGACT--TGTGGGCTTTGAAA
* * *
6918430 TGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTCCCACCGACTTGTGTGGGCTTTGAAAT
60 -GGG-TGCCACTGAC-T-TGTGGGCTTTG-AAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAAA-
* *
6918495 GGGTTGCCACCGACTTGTGTGGGCTTTGG
116 AGG-TGCCACTGAC-T-TGTGGGCTTT-G
* * *
6918524 AATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
1 AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG-AAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAA
* *
6918589 AGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTT-AAAAGGGTGC
59 AGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAA-GGTGC
*
6918653 CACTAACTTGCGTGGGCTTTG
122 CACTGACTT--GTGGGCTTTG
* * *
6918674 AAAGGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTGAAAGGA
1 AAA-GGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGAC-T-TGTGGGCTTTGAAAGGG
* * * *
6918739 TGCCACTGACTTGTGGGCTTCGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGGTACCACTGA
63 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGA
* *
6918804 CTTGCGTGAGCTTTA
128 CTT--GTGGGCTTTG
* *
6918819 AAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAG
1 AAAGG-GTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGG
* * * * * *
6918884 TGCCACTGAATTGTGGGCTTCGCAATGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCACTGA
63 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGA
*
6918949 CTTGTGGGCTCTG
128 CTTGTGGGCTTTG
* *
6918962 AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTG
* * *
6919027 CCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGA
65 CCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGA
*
6919092 CTTGTGTGGGCTTTA
128 C-T-TGTGGGCTTTG
** * * * *
6919107 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGTGCCACTGAATTGTGGGCTTCGCAATGGTGC
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
*
6919172 CACTGACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAAGGGTGCCACTGA
66 CACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTGAAAA-GGTGCCACTGA
6919237 CTTGTGGGCTTTG
128 CTTGTGGGCTTTG
* * * *
6919250 AAAGGGTGCCACTGACTTGTGAGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTTAAAAGGGTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
* * * *
6919315 CCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACCG
65 CCACTGACTT--GTGGGCTTTGAAA-GGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTG
6919380 ACTTGTGTGGGCTTTG
127 AC-T-TGTGGGCTTTG
* * * * *
6919396 AAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGGTAC
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
* *
6919461 CACTGACTTGCGTGAGCTTTAAAAGGAGTGCCACTGACTTGTGTGGGCTTT-AAAAGGGTGCCAC
66 CACTGACTT--GTGGGCTTTGAAAGG-GTGCCACTGAC-T-TGTGGGCTTTGAAAA-GGTGCCAC
*
6919525 TAACTTGTGGGCTTTG
125 TGACTTGTGGGCTTTG
* * * * * *
6919541 AAAGAGTGCCATTGAATTGTGGGCTTCGCAATGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
* * * *
6919606 CACTGACTTGTGGGCTCTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTT
66 CACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTT
6919671 GTGGGCTTTG
131 GTGGGCTTTG
* * ** *
6919681 AAAAGAGTGCCACTGATTTGTGGGCTTCAAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAG
1 -AAAGGGTGCCACTGACTTGTGGGCTT-TGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGG-G
* *
6919746 TGCCACTGACTTGTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCAC
63 TGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCAC
* *
6919810 TGAATTGTGGGCTTCG
125 TGACTTGTGGGCTTTG
* * * *
6919826 CAATGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCTACTGACTTGCGTGGGCTTTGAAAAGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTG-AAAGGG
* *
6919891 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGAGTGCCACTA
63 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTG
*
6919956 ACTTGTGGGCTTTA
127 ACTTGTGGGCTTTG
* * *
6919970 AAAGGGTGCCACTAACTTACGTTGGCTTTGAAAGGGGTGCCACTTACTTGTGGGCTTTGAAAGGG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTGAAA-GGGTGCCACTGACTTGTGGGCTTTGAAAGGG
* * * * *
6920035 TGCCACCGACTTGTGTGGGCTTTAAAAAGTGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTT
63 TGCCACTGAC-T-TGTGGGCTTT-GAAAG-GGTGCCACTGAC-T-TGTGGGCTTTGAAA-AGG-T
*
6920100 GCCACCGACTTGTGTGGGCTTTG
120 GCCACTGAC-T-TGTGGGCTTTG
* * ** * * * * ** *
6920123 AAATGGGTGCCACAGAGTTGTGGATTTTAAAAGAGTGCCACGGAGTTGTGGATTTTAAAAGGGTG
1 AAA-GGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
* * ** * * * * * * *
6920188 CCACGGAGTTGTGGATTTTAAAAGGGTGCCACGGAGTTGT-GGATTTTAAAAGGGTGCCACAGAG
65 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGAC
* * **
6920252 TTATGGAC-TCA
129 TTGTGGGCTTTG
* * * * * * * * * * *
6920263 AAAGAGATGCCACGGAGTTATGGAC-TTAAAAGGGTGCCACGGAGTTGTGGTC-TTAAAAGGATG
1 AAAG-GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
* * * * * * * * *
6920326 CCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TT-AAAAGAGTGCCACAGAG
65 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGAC
* * *
6920388 TTGTAGAC-TTA
129 TTGTGGGCTTTG
* * * * * * * *
6920399 AAAGGGTGCCACGGAGTTGTGGTC-TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGC
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
* * * * * * * * * * *
6920463 CACAGAGTTGTGGAC-TTAAAAGAGATGCCACAGAGTTATGGAC-TT-AAAATGGTGCCACGGAG
66 CACTGACTTGTGGGCTTTGAAAG-GGTGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGAC
* *
6920525 TTGTGGAC-TTA
129 TTGTGGGCTTTG
* * * * ** * * * * * *
6920536 AAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGAATGCTACGGAGTTGTGGACTTTAAAAGGATGC
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
* * * * * * *
6920600 CAC-GAAGTTGTGGAC-TTAAAAGGGATGCCACGGAGTTGTGGAC-TT-AAAAGGGTGCCACGGA
66 CACTG-ACTTGTGGGCTTTGAAAGGG-TGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGA
* * *
6920661 GTTGTGGAC-TTA
128 CTTGTGGGCTTTG
* * * *
6920673 AAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCAC
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAC
6920712 GGAGTTGTAA
Statistics
Matches: 1904, Mismatches: 221, Indels: 148
0.84 0.10 0.07
Matches are distributed among these distances:
135 44 0.02
136 61 0.03
137 228 0.12
138 27 0.01
139 25 0.01
140 92 0.05
141 60 0.03
142 80 0.04
143 160 0.08
144 169 0.09
145 460 0.24
146 138 0.07
147 91 0.05
148 26 0.01
149 11 0.01
150 27 0.01
151 61 0.03
152 15 0.01
153 23 0.01
154 13 0.01
155 7 0.00
156 17 0.01
157 1 0.00
158 9 0.00
159 8 0.00
160 50 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (140 bp):
AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
CACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTT
GTGGGCTTTG
Found at i:6920356 original size:663 final size:662
Alignment explanation
Indices: 6918363--6920475 Score: 2890
Period size: 663 Copynumber: 3.2 Consensus size: 662
6918353 TTTTTTTTAA
* * * * * * *
6918363 AAAAAGGGTGCCACTAACTTATGTGGGCCTTGAAAAGAATTGCCACCGACTCGTGTGGGCTTTGA
1 AAAAAGAGTGCCACTGAC-T-TGTGGGCTTTG-AAAGGAGTGCCACTGACTTGTGTGGGCTTT-A
* * * * * * * *
6918428 AATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTCCCACCGACTTGTGTGGGCTTTGAA
62 AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG-AAAGAG-TGCCACTGA-AT-TGTGGGCTTCGCA
* * * * *
6918493 ATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAA
120 AT-GG-TGCCACTGAC-T-TGTGGGC-TTCGAAAGGG-TGCCACTGACTTGCGTGGGCTTTGAAA
*
6918558 AGGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGT
179 AGGG-TGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGT
6918623 GCCACTAACTTGTGGGCTTTAAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACT
241 GCCACTAACTTGTGGGCTTTAAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACT
6918688 AACTTGTGGGCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTGACTTGT
306 AACTTGTGGGCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTGACTTGT
*
6918753 GGGCTTCGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGGTACCACTGACTTGCGTGAGCTTT
371 GGGCTTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGGTACCACTGACTTGCGTGAGCTTT
6918818 AAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGA
436 AAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGA
6918883 GTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCACTG
501 GTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCACTG
6918948 ACTTGTGGGCTCTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
566 ACTTGTGGGCTCTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
6919013 CTTTGAAAAGAGTGCCACTGATTTGTGGGCTTT
631 CTTTGAAAAGAGTGCCACTGATTTGTGGGC-TT
*
6919046 GAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAG
*
6919111 GGTGCCACTGACTTGTGGGCTTTGAAAAAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACT
66 GGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACT
6919176 GACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAAGGGTGCCACTGACTTG
131 GACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAAGGGTGCCACTGACTTG
*
6919241 TGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTT
196 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTT
6919306 AAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTAACTTGTGGGCTTTGAAAGG
261 AAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTAACTTGTGGGCTTTGAAAGG
6919371 GTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCAC
326 GTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCAC
6919436 TGACTCGTGGGCTTTGAAAAGGTACCACTGACTTGCGTGAGCTTTAAAAGGAGTGCCACTGACTT
391 TGACTCGTGGGCTTTGAAAAGGTACCACTGACTTGCGTGAGCTTTAAAAGGAGTGCCACTGACTT
* *
6919501 GTGTGGGCTTTAAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGAGTGCCATTGAATTGTGGGCT
456 GTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGGGCT
*
6919566 TCGCAATGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTCTGAAAGGG
521 TCGCAATGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGTGGGCTCTGAAAGGG
*
6919631 TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTG
586 TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
6919696 ATTTGTGGGCTT
651 ATTTGTGGGCTT
6919708 CAAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAA
1 -AAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAA
*
6919773 GGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCAC
65 GGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCAC
*
6919838 TGACTTGTGGGCTTCGAAAGGGTGCTACTGACTTGCGTGGGCTTTGAAAAGGGTGCCACTGACTT
130 TGACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAAGGGTGCCACTGACTT
*
6919903 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGAGTGCCACTAACTTGTGGGCTT
195 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTT
* * *
6919968 TAAAAGGGTGCCACTAACTTACGTTGGCTTTGAAAGGGGTGCCACTTACTTGTGGGCTTTGAAAG
260 TAAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTAACTTGTGGGCTTTGAAAG
* * * *
6920033 GGTGCCACCGACTTGTGTGGGCTTTAAAAAGTGTTGCCACCGACTTGTGTGGGCTTTGAAATGGG
325 GGTGCCACCGACTTGTGTGGGCTTT-GAAAG-GATGCCACTGAC-T-TGTGGGCTTTGAAA-GAG
* * * * * * * *
6920098 TTGCCACCGACTTGTGTGGGCTTTGAAATGGGTGCCACAGAGTTGTG-GA-TTTTAAAA-GAGTG
385 -TGCCACTGAC-T-CGTGGGCTTTGAAA-AGGTACCACTGACTTGCGTGAGCTTTAAAAGGAGTG
* * ** * * ** * * *
6920160 CCACGGA-GT-TGTGGATTTTAAAAGGGTGCCACGGAGTTGTGGATTTTAAAAGGGTGCCACGGA
446 CCACTGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGA
* ** *** * * * * * * * * * * *
6920223 GTTGTGGATTTTAAAAGGGTGCCACAGAGTTATGGAC-TCAAAAGAGATGCCACGGAGTTATGGA
511 ATTGTGGGCTTCGCAATGGTGCCACTGACTTGTGGGCTTCGAAAG-GGTGCCACTGACTTGTGGG
* ** * * * * * * *
6920287 CT-TAAAAGGGTGCCACGGAGTTGTGGTC-TTAAAAGGATGCCACGGAGTTGTGGAC-TT-AAAA
575 CTCTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAA
* * * *
6920348 GGGTGCCACGGAGTTGTGGACTT
640 GAGTGCCACTGATTTGTGGGCTT
* * * * * * * *
6920371 -AAAAGAGTGCCACAGAGTTGTAGAC-TTAAAAGG-GTGCCACGGA-GT-TGTGGTC-TTAAAAG
1 AAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAG
* * * * * * *
6920430 GGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGG
66 GGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGG
6920476 ACTTAAAAGA
Statistics
Matches: 1307, Mismatches: 112, Indels: 49
0.89 0.08 0.03
Matches are distributed among these distances:
656 45 0.03
657 6 0.00
658 1 0.00
659 9 0.01
660 7 0.01
661 21 0.02
662 2 0.00
663 824 0.63
664 7 0.01
665 40 0.03
666 56 0.04
667 107 0.08
668 10 0.01
669 21 0.02
670 17 0.01
671 17 0.01
672 26 0.02
673 1 0.00
674 7 0.01
675 4 0.00
676 11 0.01
677 1 0.00
678 9 0.01
679 6 0.00
680 26 0.02
681 10 0.01
682 1 0.00
683 15 0.01
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.27
Consensus pattern (662 bp):
AAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGTGGGCTTTAAAAG
GGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGGGCTTCGCAATGGTGCCACT
GACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAAGGGTGCCACTGACTTG
TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTT
AAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAGGGGTGCCACTAACTTGTGGGCTTTGAAAGG
GTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCAC
TGACTCGTGGGCTTTGAAAAGGTACCACTGACTTGCGTGAGCTTTAAAAGGAGTGCCACTGACTT
GTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAATTGTGGGCT
TCGCAATGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGTGGGCTCTGAAAGGG
TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
ATTTGTGGGCTT
Found at i:6920534 original size:137 final size:136
Alignment explanation
Indices: 6920127--6920719 Score: 873
Period size: 137 Copynumber: 4.3 Consensus size: 136
6920117 GCTTTGAAAT
* * * * *
6920127 GGGTGCCACAGAGTTGTGGATTTTAAAAGAGTGCCACGGAGTTGTGGATTTTAAAAGGGTGCCAC
1 GGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCAC
* * * *
6920192 GGAGTTGTGGATTTTAAAAGGGTGCCACGGAGTTGTGGATTTTAAAAGGGTGCCACAGAGTTATG
65 GGAGTTGTGGA-CTTAAAAGGATGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACAGAGTTGTG
*
6920257 GACTCAAAA
128 GACTTAAAA
* * *
6920266 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGTC-TTAAAAGGATGCCAC
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCAC
* * *
6920330 GGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTAGA
65 GGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGA
6920395 CTTAAAA
130 CTTAAAA
* * *
6920402 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACG
* * * *
6920467 GAGTTGTGGACTTAAAAGAGATGCCACAGAGTTATGGACTTAAAATGGTGCCACGGAGTTGTGGA
66 GAGTTGTGGACTTAAAAG-GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGA
6920532 CTTAAAA
130 CTTAAAA
** *
6920539 GGGTGCCACGGAGTTGTGGACTTAAAAGAATGCTACGGAGTTGTGGACTTTAAAAGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACG
* *
6920604 AAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGA
66 GAGTTGTGGACTTAAAA-GGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGA
6920669 CTTAAAA
130 CTTAAAA
6920676 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGT
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGT
6920720 AAGCTTTAAA
Statistics
Matches: 410, Mismatches: 40, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
135 43 0.10
136 62 0.15
137 238 0.58
138 26 0.06
139 25 0.06
140 16 0.04
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (136 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACG
GAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGAC
TTAAAA
Found at i:6920730 original size:27 final size:27
Alignment explanation
Indices: 6920127--6920719 Score: 862
Period size: 27 Copynumber: 21.6 Consensus size: 27
6920117 GCTTTGAAAT
* *
6920127 GGGTGCCACAGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
* *
6920155 GAGTGCCACGGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
*
6920183 GGGTGCCACGGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
*
6920211 GGGTGCCACGGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
* * *
6920239 GGGTGCCACAGAGTTATGGACTCAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
6920266 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
6920294 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
6920321 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6920348 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
6920375 GAGTGCCACAGAGTTGTAGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
6920402 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6920429 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
6920457 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
6920484 GAGATGCCACAGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
6920512 TGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6920539 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
** *
6920566 GAATGCTACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
6920594 GGATGCCACGAAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6920621 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
6920649 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6920676 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
6920703 GGGTGCCACGGAGTTGT
1 GGGTGCCACGGAGTTGT
6920720 AAGCTTTAAA
Statistics
Matches: 520, Mismatches: 40, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
27 297 0.57
28 223 0.43
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:6922292 original size:1 final size:1
Alignment explanation
Indices: 6922286--6922311 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
6922276 TGGCAACGGA
6922286 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
6922312 AAAGAGAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:6928283 original size:24 final size:22
Alignment explanation
Indices: 6928227--6928275 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
6928217 TGGACATGTT
6928227 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
6928249 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
6928271 AAAAA
1 AAAAA
6928276 AATGCATGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.67, C:0.08, G:0.08, T:0.16
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:6929171 original size:20 final size:20
Alignment explanation
Indices: 6929146--6929260 Score: 99
Period size: 20 Copynumber: 5.7 Consensus size: 20
6929136 TTTTAACTAG
*
6929146 ATGTATCGATACATTATTCA
1 ATGTATCGATACATTATACA
***
6929166 ATGTATCGATACATCTAGGTA
1 ATGTATCGATACAT-TATACA
* * *
6929187 ATATATCGATACATTCTAGA
1 ATGTATCGATACATTATACA
*
6929207 ATATATCGATACATTCATAC-
1 ATGTATCGATACATT-ATACA
* *
6929227 ATGTATCGATATATTGA-AAA
1 ATGTATCGATACATT-ATACA
6929247 ATGTATCGATACAT
1 ATGTATCGATACAT
6929261 CAGGGTAAAA
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.01
20 58 0.75
21 18 0.23
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTATACA
Found at i:6936782 original size:13 final size:13
Alignment explanation
Indices: 6936766--6936829 Score: 70
Period size: 13 Copynumber: 5.5 Consensus size: 13
6936756 ATACATTGTT
6936766 CATTGTATCGATA
1 CATTGTATCGATA
6936779 CATTGTATCGATA
1 CATTGTATCGATA
6936792 CATTG--T---T-
1 CATTGTATCGATA
6936799 CATTGTATCGATA
1 CATTGTATCGATA
*
6936812 CAATGTATC-ATA
1 CATTGTATCGATA
6936824 CATTGT
1 CATTGT
6936830 TCATTGTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
7 5 0.12
8 1 0.02
9 1 0.02
11 1 0.02
12 9 0.21
13 26 0.60
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:6936792 original size:33 final size:33
Alignment explanation
Indices: 6936748--6936950 Score: 178
Period size: 33 Copynumber: 6.1 Consensus size: 33
6936738 TTTTCACAAT
*
6936748 TTGTATTGATACATTGTTCATTGTATCGATACA
1 TTGTATCGATACATTGTTCATTGTATCGATACA
6936781 TTGTATCGATACATTGTTCATTGTATCGATACA
1 TTGTATCGATACATTGTTCATTGTATCGATACA
* *
6936814 ATGTATC-ATACATTGTTCATTGTATTGATACA
1 TTGTATCGATACATTGTTCATTGTATCGATACA
* ** * * ** *** *
6936846 TTCT-GGGTTTACCCAAATGTATCGA-TACATTTTTGCA
1 TTGTATCG-ATA--C-ATTGT-TC-ATTGTATCGATACA
*
6936883 TTGTATCGATACATTGCTCATTGTATCGATACA
1 TTGTATCGATACATTGTTCATTGTATCGATACA
* *
6936916 TTGTATCGATACATGGCTCATTGTATCGATACA
1 TTGTATCGATACATTGTTCATTGTATCGATACA
6936949 TT
1 TT
6936951 TTACAACGTA
Statistics
Matches: 134, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
32 27 0.20
33 82 0.61
34 3 0.02
35 2 0.01
36 4 0.03
37 14 0.10
38 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (33 bp):
TTGTATCGATACATTGTTCATTGTATCGATACA
Found at i:6936802 original size:20 final size:20
Alignment explanation
Indices: 6936748--6936970 Score: 105
Period size: 20 Copynumber: 11.8 Consensus size: 20
6936738 TTTTCACAAT
*
6936748 TTGTATTGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
6936768 TTGTATCGAT--A-----CA
1 TTGTATCGATACATTGTTCA
6936781 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
6936801 TTGTATCGATACA------A
1 TTGTATCGATACATTGTTCA
6936815 -TGTATC-ATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
6936833 TTGTATTGATACATTCTGGGTTTACCCAA
1 TTGTATCGATACA-T-T--G-TT---C-A
* *
6936862 ATGTATCGATACATTTTTGCA
1 TTGTATCGATACATTGTT-CA
*
6936883 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
6936903 TTGTATCGAT--A-----CA
1 TTGTATCGATACATTGTTCA
* *
6936916 TTGTATCGATACATGGCTCA
1 TTGTATCGATACATTGTTCA
6936936 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
**
6936956 ACGTATCGATACATT
1 TTGTATCGATACATT
6936971 CAAGCATTTT
Statistics
Matches: 158, Mismatches: 13, Indels: 64
0.67 0.06 0.27
Matches are distributed among these distances:
12 5 0.03
13 30 0.19
14 1 0.01
15 2 0.01
18 3 0.02
19 6 0.04
20 72 0.46
21 17 0.11
22 2 0.01
24 3 0.02
25 2 0.01
27 1 0.01
28 2 0.01
29 12 0.08
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:6936917 original size:13 final size:13
Alignment explanation
Indices: 6936901--6936929 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
6936891 ATACATTGCT
6936901 CATTGTATCGATA
1 CATTGTATCGATA
6936914 CATTGTATCGATA
1 CATTGTATCGATA
6936927 CAT
1 CAT
6936930 GGCTCATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:6936962 original size:53 final size:54
Alignment explanation
Indices: 6936779--6936970 Score: 139
Period size: 53 Copynumber: 3.7 Consensus size: 54
6936769 TGTATCGATA
* ** * * *
6936779 CATTGTATCGATACATTGTTCATTGTATCGATACAATGTATC-ATACATTG-TT
1 CATTGTATCGATACATTGCTCAACGTATCGATACATTGTATCGATACATGGCTG
* ***** * * ***
6936831 CATTGTATTGATACATT-CTGGGTTTACCCA-A-A-TGTATCGATACATTTTTG
1 CATTGTATCGATACATTGCTCAACGTATCGATACATTGTATCGATACATGGCTG
**
6936881 CATTGTATCGATACATTGCTCATTGTATCGATACATTGTATCGATACATGGCT-
1 CATTGTATCGATACATTGCTCAACGTATCGATACATTGTATCGATACATGGCTG
*
6936934 CATTGTATCGATACATT-TTACAACGTATCGATACATT
1 CATTGTATCGATACATTGCT-CAACGTATCGATACATT
6936971 CAAGCATTTT
Statistics
Matches: 110, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
48 6 0.05
49 8 0.07
50 18 0.16
51 13 0.12
52 18 0.16
53 33 0.30
54 14 0.13
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (54 bp):
CATTGTATCGATACATTGCTCAACGTATCGATACATTGTATCGATACATGGCTG
Found at i:6939331 original size:51 final size:51
Alignment explanation
Indices: 6939268--6939484 Score: 233
Period size: 51 Copynumber: 4.3 Consensus size: 51
6939258 TTTTCATCTT
* **
6939268 GGGGATACTCCAA-TCCCGGTTTCATTTCTAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAACT-CCGATTTCATTTCTAAAACATCAATTTTTCACAATC
* * ** *
6939319 GGGGATACTCCAACTCCGATTTTATTTCTAAAGCATCAATTTACCACAACC
1 GGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAATTTTTCACAATC
* * **
6939370 GGGGATACTCCAA-TCCTGGTTTCATCTCTAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAACTCC-GATTTCATTTCTAAAACATCAATTTTTCACAATC
* * * * * *
6939421 -GGGATACTCCAACTCTGATTTTATTCCCAAAACACCAATTTTTCACAATT
1 GGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAATTTTTCACAATC
6939471 GGGGATACTCCAAC
1 GGGGATACTCCAAC
6939485 CCTGTTATTT
Statistics
Matches: 135, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
50 40 0.30
51 94 0.70
52 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAATTTTTCACAATC
Found at i:6939666 original size:107 final size:107
Alignment explanation
Indices: 6939471--6939670 Score: 267
Period size: 107 Copynumber: 1.9 Consensus size: 107
6939461 TTTCACAATT
** * * **
6939471 GGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATATCTAAAATATT
1 GGGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAAACCCGATTTTATATCTAAAATACC
* * * * *
6939536 GATTTTTCATAATTGGGGGTACTCCAACCCCGTTAGGTCATC
66 AAATTTTCACAATCGGGGATACTCCAACCCCGTTAGGTCATC
* *
6939578 GGGGATACTCCAATCCC-GTTATTTCCAAGGGGATACTCCAAACTCGATTTTATTTCTAAAATAC
1 GGGGATACTCCAA-CCCTGTTATTTCCAAGGGGATACTCCAAACCCGATTTTATATCTAAAATAC
6939642 CAAATTTTCACAATCGGGGATACTCCAAC
65 CAAATTTTCACAATCGGGGATACTCCAAC
6939671 TCCGATTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
107 76 0.96
108 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAAACCCGATTTTATATCTAAAATACC
AAATTTTCACAATCGGGGATACTCCAACCCCGTTAGGTCATC
Found at i:6939716 original size:51 final size:50
Alignment explanation
Indices: 6939610--6939721 Score: 129
Period size: 51 Copynumber: 2.2 Consensus size: 50
6939600 TTCCAAGGGG
* *
6939610 ATACTCCAAACTCGATTTTATTTCTAAAATACCAAATTTTCACAATCGGGG
1 ATACTCC-AACTCGATTTTATTTCTAAAATACCAAATTTTCACAATCAGGA
* * *
6939661 ATACTCCAACTCCGATTTTATTT-TCAAATCACC-AATTTTCTATAATTAGGA
1 ATACTCCAACT-CGATTTTATTTCTAAAAT-ACCAAATTTTC-ACAATCAGGA
6939712 ATACTCCAAC
1 ATACTCCAAC
6939722 CCCATTATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
50 16 0.30
51 37 0.70
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (50 bp):
ATACTCCAACTCGATTTTATTTCTAAAATACCAAATTTTCACAATCAGGA
Found at i:6939743 original size:79 final size:79
Alignment explanation
Indices: 6939658--6939882 Score: 257
Period size: 79 Copynumber: 2.8 Consensus size: 79
6939648 TTCACAATCG
* *
6939658 GGGATACTCCAA-CTCCGATTTTATTTTCAAATCACCAATTTTCTATAATTAGGAATACTCCAAC
1 GGGATACTCCAACCT-CGATTTTACTTTCAAATCACCAATTTTCTATAATCAGGAATACTCCAAC
6939722 CC-CATTA-TTTCTG-A
65 CCTC-TTATTTTC-GAA
* *
6939736 GGAGATACTCCAACCTCGATTTTAGTTTCAAAAT-ACCAATTTTCTATAATCAGGGATACTCCAA
1 GG-GATACTCCAACCTCGATTTTACTTTC-AAATCACCAATTTTCTATAATCAGGAATACTCCAA
6939800 CCCTCTTATTTTCGAA
64 CCCTCTTATTTTCGAA
* * * * *
6939816 GGGATACTCCAACCTCGATTTTACTTCCAAAACACCGATTTT-TCATAATC-GGAGATATTCCAG
1 GGGATACTCCAACCTCGATTTTACTTTCAAATCACCAATTTTCT-ATAATCAGGA-ATACTCCAA
6939879 CCCT
64 CCCT
6939883 GTTTTATCTC
Statistics
Matches: 128, Mismatches: 10, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
78 8 0.06
79 106 0.83
80 14 0.11
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.33
Consensus pattern (79 bp):
GGGATACTCCAACCTCGATTTTACTTTCAAATCACCAATTTTCTATAATCAGGAATACTCCAACC
CTCTTATTTTCGAA
Found at i:6942124 original size:7 final size:7
Alignment explanation
Indices: 6942112--6942139 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
6942102 ATTTTTTAAA
6942112 AAATTTT
1 AAATTTT
6942119 AAATTTT
1 AAATTTT
6942126 AAATTTT
1 AAATTTT
6942133 AAATTTT
1 AAATTTT
6942140 GAATATTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AAATTTT
Found at i:6944598 original size:14 final size:13
Alignment explanation
Indices: 6944574--6944606 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6944564 TATAAAAAAT
6944574 AAATATTTA-AAA
1 AAATATTTATAAA
*
6944586 AATTATTTATAAA
1 AAATATTTATAAA
6944599 AAATATTT
1 AAATATTT
6944607 TCACAACGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AAATATTTATAAA
Found at i:6945008 original size:12 final size:12
Alignment explanation
Indices: 6944977--6945009 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
6944967 TTGACTATCC
*
6944977 TTAATTTTAATT
1 TTAATTTTTATT
6944989 TTAATTTTT-TT
1 TTAATTTTTATT
6945000 TTAATTTTTA
1 TTAATTTTTA
6945010 AAATTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTAATTTTTATT
Found at i:6945893 original size:26 final size:26
Alignment explanation
Indices: 6945811--6945899 Score: 65
Period size: 26 Copynumber: 3.3 Consensus size: 26
6945801 TAGATTAATA
* * *
6945811 AAATGTAATTTTTAAAAGTCGTAAA-
1 AAATATAATTTTTAAAAATCATAAAT
* *
6945836 AAATA-AATTATTAATAAAATTATAAATGAT
1 AAATATAATT-TTTA-AAAATCAT-AA--AT
6945866 AAATATAATTTTTAAAAATCATAAAT
1 AAATATAATTTTTAAAAATCATAAAT
*
6945892 AAAAATAA
1 AAATATAA
6945900 AAGCTTACAA
Statistics
Matches: 49, Mismatches: 8, Indels: 13
0.70 0.11 0.19
Matches are distributed among these distances:
24 4 0.08
25 7 0.14
26 14 0.29
27 2 0.04
28 2 0.04
29 8 0.16
30 8 0.16
31 4 0.08
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATATAATTTTTAAAAATCATAAAT
Found at i:6946910 original size:17 final size:17
Alignment explanation
Indices: 6946886--6946934 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
6946876 AATTCGTAGA
6946886 AATTATTTTTGAATTTG
1 AATTATTTTTGAATTTG
* *
6946903 AGTTA-TTTTAAATTTG
1 AATTATTTTTGAATTTG
6946919 AATT-TATTTTGAATTT
1 AATTAT-TTTTGAATTT
6946935 TGATCATCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (17 bp):
AATTATTTTTGAATTTG
Found at i:6946916 original size:16 final size:17
Alignment explanation
Indices: 6946892--6946934 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
6946882 TAGAAATTAT
6946892 TTTTGAATTTG-AGTTA
1 TTTTGAATTTGAAGTTA
* *
6946908 TTTTAAATTTGAATTTA
1 TTTTGAATTTGAAGTTA
6946925 TTTTGAATTT
1 TTTTGAATTT
6946935 TGATCATCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (17 bp):
TTTTGAATTTGAAGTTA
Found at i:6949002 original size:33 final size:32
Alignment explanation
Indices: 6948940--6949000 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
6948930 GAGCGTTTTC
*
6948940 GGGTTTAGATTTTTTTAAATTCAAATTTTCTA
1 GGGTTGAGATTTTTTTAAATTCAAATTTTCTA
*
6948972 GGGTTGAGGTTTTTTTAAATTCAAATTTT
1 GGGTTGAGATTTTTTTAAATTCAAATTTT
6949001 TCAAGTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.52
Consensus pattern (32 bp):
GGGTTGAGATTTTTTTAAATTCAAATTTTCTA
Done.