Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 44 of 47
Found at i:7069400 original size:41 final size:41
Alignment explanation
Indices: 7069343--7069424 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
7069333 CTCAAGCAGC
7069343 CCACCAAGCTCAATAACTTAACTCATATTGCATTAAACCAA
1 CCACCAAGCTCAATAACTTAACTCATATTGCATTAAACCAA
7069384 CCACCAAGCTCAATAACTTAACTCATATTGCATTAAACCAA
1 CCACCAAGCTCAATAACTTAACTCATATTGCATTAAACCAA
7069425 AATAAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.29, G:0.05, T:0.24
Consensus pattern (41 bp):
CCACCAAGCTCAATAACTTAACTCATATTGCATTAAACCAA
Found at i:7069493 original size:12 final size:14
Alignment explanation
Indices: 7069478--7069510 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7069468 TATTTTTATT
7069478 TAAAT-TTAAT-TA
1 TAAATATTAATATA
7069490 TAAATATTAATATA
1 TAAATATTAATATA
7069504 TAAATAT
1 TAAATAT
7069511 ATTTTTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 5 0.26
14 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAAATATTAATATA
Found at i:7077989 original size:52 final size:52
Alignment explanation
Indices: 7077907--7078018 Score: 206
Period size: 52 Copynumber: 2.2 Consensus size: 52
7077897 AGTTACAGTG
*
7077907 CAGCATTACAATTTCTACATCCATCGGCCTAAACTTTCATTTATTGTCTTTT
1 CAGCATTACAATTTCTACATCCATCAGCCTAAACTTTCATTTATTGTCTTTT
7077959 CAGCATTACAATTTCTACATCCATCAGCCTAAACTTTCATTTATTGTCTTTT
1 CAGCATTACAATTTCTACATCCATCAGCCTAAACTTTCATTTATTGTCTTTT
*
7078011 CAGTATTA
1 CAGCATTA
7078019 GTTATTTCTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (52 bp):
CAGCATTACAATTTCTACATCCATCAGCCTAAACTTTCATTTATTGTCTTTT
Found at i:7080811 original size:16 final size:15
Alignment explanation
Indices: 7080790--7080828 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7080780 ATCAATAAAT
*
7080790 AAAGAAACAAAAAGAA
1 AAAGAAA-AAAAACAA
7080806 AAAGAAAAAAAACAA
1 AAAGAAAAAAAACAA
*
7080821 AAACAAAA
1 AAAGAAAA
7080829 TATTCTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAACAA
Found at i:7081628 original size:22 final size:23
Alignment explanation
Indices: 7081585--7081629 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
7081575 GTTATGCATG
*
7081585 AATATAATAAATTTAATTATAAA
1 AATATAATAAATTTAATAATAAA
7081608 AATAT-ATAAATATTAA-AATAAA
1 AATATAATAAAT-TTAATAATAAA
7081630 TTTTTTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
AATATAATAAATTTAATAATAAA
Found at i:7081797 original size:18 final size:17
Alignment explanation
Indices: 7081768--7081801 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
7081758 TAAATTATTT
7081768 ATTTAAATTTAAAATTA
1 ATTTAAATTTAAAATTA
7081785 ATTTAATATTTAAAATT
1 ATTTAA-ATTTAAAATT
7081802 TTTAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAAATTTAAAATTA
Found at i:7083549 original size:23 final size:22
Alignment explanation
Indices: 7083518--7083560 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
7083508 AATTTAATTT
7083518 TAAAAATTTATAAA-AATTAATA
1 TAAAAATTT-TAAATAATTAATA
7083540 TAAAATATTTTAAATAATTAA
1 TAAAA-ATTTTAAATAATTAA
7083561 ATGAGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAATTTTAAATAATTAATA
Found at i:7084652 original size:32 final size:32
Alignment explanation
Indices: 7084616--7084679 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
7084606 AGAACTTTAA
* * *
7084616 AAATATAGTACAAATAATCATATTTTTAATTT
1 AAATATAATACAAATAACCATATATTTAATTT
* *
7084648 AAATATAATATAGATAACCATATATTTAATTT
1 AAATATAATACAAATAACCATATATTTAATTT
7084680 GTTAGCTTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (32 bp):
AAATATAATACAAATAACCATATATTTAATTT
Found at i:7085658 original size:2 final size:2
Alignment explanation
Indices: 7085651--7085677 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7085641 TTGATTCAAA
7085651 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7085678 AGGCAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7086765 original size:166 final size:167
Alignment explanation
Indices: 7086440--7086768 Score: 561
Period size: 167 Copynumber: 2.0 Consensus size: 167
7086430 GAAAAGAAAA
* * *
7086440 TTATCCTATGTGTATTAGGGCATAGGCAAGTCATATGACAATGAACTTTATGTAGAGTATGATAC
1 TTATCCTATGTGTATTAGGGCATAGGCAAGTCATATGACAATCAACTCTATGTAAAGTATGATAC
*
7086505 GGCTAATAACAAGCTCTTTGGCAATGATCACCAATGATCTTATTAGTCTAATGGCTATATTTCAA
66 GGCTAATAACAAGCTCTTTGGCAATGATCACCAATGATCTTATTAGTCTAATGACTATATTTCAA
7086570 TAGCTTGTGGTAAAGCATTTCATTAAAAGTGTTAAGT
131 TAGCTTGTGGTAAAGCATTTCATTAAAAGTGTTAAGT
* * *
7086607 TTATCCTATGTGTATTAGGGCATAGGCATGTCATATGACGATCAACTCTATGTAAAGTATGATAT
1 TTATCCTATGTGTATTAGGGCATAGGCAAGTCATATGACAATCAACTCTATGTAAAGTATGATAC
* *
7086672 GGCTAATAACAAGCTCTTT-GTAATGATCACCAATGATCTTATTAGTCTCATGACTATATTTCAA
66 GGCTAATAACAAGCTCTTTGGCAATGATCACCAATGATCTTATTAGTCTAATGACTATATTTCAA
*
7086736 TAGCTTGTGGTAAGGCATTTCATTAAAAGTGTT
131 TAGCTTGTGGTAAAGCATTTCATTAAAAGTGTT
7086769 GAGATGCTTT
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
166 74 0.49
167 78 0.51
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (167 bp):
TTATCCTATGTGTATTAGGGCATAGGCAAGTCATATGACAATCAACTCTATGTAAAGTATGATAC
GGCTAATAACAAGCTCTTTGGCAATGATCACCAATGATCTTATTAGTCTAATGACTATATTTCAA
TAGCTTGTGGTAAAGCATTTCATTAAAAGTGTTAAGT
Found at i:7088939 original size:24 final size:24
Alignment explanation
Indices: 7088877--7088939 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
7088867 GTTAAGCTTT
*
7088877 TCATAAAGATAGTTTCAAAACCTC
1 TCATAAAGATATTTTCAAAACCTC
* * *
7088901 TCACAAAGGTGTTTTCAAAACCTC
1 TCATAAAGATATTTTCAAAACCTC
*
7088925 TCATAAAGATTTTTT
1 TCATAAAGATATTTT
7088940 TTAAAGCTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.35
Consensus pattern (24 bp):
TCATAAAGATATTTTCAAAACCTC
Found at i:7089065 original size:24 final size:25
Alignment explanation
Indices: 7089013--7089065 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
7089003 TAAGAAGATA
*
7089013 TTTTCAAAGTCTCTCATGAAGATG-
1 TTTTCAAAATCTCTCATGAAGATGC
*
7089037 TTTTTAAAATCTCTCATGACA-ATGC
1 TTTTCAAAATCTCTCATGA-AGATGC
7089062 TTTT
1 TTTT
7089066 TTAAAGCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.43
Consensus pattern (25 bp):
TTTTCAAAATCTCTCATGAAGATGC
Found at i:7089070 original size:26 final size:24
Alignment explanation
Indices: 7089006--7089055 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
7088996 ATCTTTTTAA
* * *
7089006 GAAGATATTTTCAAAGTCTCTCAT
1 GAAGATGTTTTTAAAATCTCTCAT
7089030 GAAGATGTTTTTAAAATCTCTCAT
1 GAAGATGTTTTTAAAATCTCTCAT
7089054 GA
1 GA
7089056 CAATGCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (24 bp):
GAAGATGTTTTTAAAATCTCTCAT
Found at i:7089124 original size:46 final size:48
Alignment explanation
Indices: 7089063--7089165 Score: 120
Period size: 46 Copynumber: 2.2 Consensus size: 48
7089053 TGACAATGCT
*
7089063 TTTTTAAAGCCTTTTATGAAAAT-TTTTTAAAGCCTCTTA-AAGGATG
1 TTTTTAAAGCCTTTTATGAAAATGTTTTTAAAGCCTCTCACAAGGATG
* * * * * *
7089109 TTTTTAGAGCTTTTTATGTAGATGTTTTTAGAGTCTCTCACAAGGATG
1 TTTTTAAAGCCTTTTATGAAAATGTTTTTAAAGCCTCTCACAAGGATG
7089157 TTTCTTAAA
1 TTT-TTAAA
7089166 ACCTCTCATA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
46 19 0.41
47 13 0.28
48 10 0.22
49 4 0.09
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.46
Consensus pattern (48 bp):
TTTTTAAAGCCTTTTATGAAAATGTTTTTAAAGCCTCTCACAAGGATG
Found at i:7089769 original size:26 final size:26
Alignment explanation
Indices: 7089714--7089769 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
7089704 ATTAGTTTAT
*
7089714 TTTTATCAAACATCTTTTAAGGTTTA
1 TTTTATCAAACATCTTTTAAGGATTA
* * *
7089740 TTTTATCAAACCTCTTTTGAGGATTG
1 TTTTATCAAACATCTTTTAAGGATTA
7089766 TTTT
1 TTTT
7089770 GTTTATATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.52
Consensus pattern (26 bp):
TTTTATCAAACATCTTTTAAGGATTA
Found at i:7090332 original size:4 final size:4
Alignment explanation
Indices: 7090323--7090372 Score: 55
Period size: 4 Copynumber: 11.8 Consensus size: 4
7090313 CCATTGTTTT
* *
7090323 TTTA TTTA TTTA TTTA TTCTCA TTTA TTTT TTTAA ATTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TT-T-A TTTA TTTA TTT-A TTTA TTTA TTTA TTT
7090373 TATTATAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 32 0.82
5 4 0.10
6 3 0.08
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:7091473 original size:15 final size:15
Alignment explanation
Indices: 7091449--7091489 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7091439 AGATATTGTA
*
7091449 GCATAGATACTTTTG
1 GCATAAATACTTTTG
7091464 GCATAAATACTTTTG
1 GCATAAATACTTTTG
* *
7091479 GAACAAATACT
1 GCATAAATACT
7091490 CTTACACAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (15 bp):
GCATAAATACTTTTG
Found at i:7091536 original size:15 final size:15
Alignment explanation
Indices: 7091456--7091536 Score: 67
Period size: 15 Copynumber: 5.5 Consensus size: 15
7091446 GTAGCATAGA
* * *
7091456 TACTTTTGGCATAAA
1 TACTTTTGACACAAG
*
7091471 TACTTTTGGA-ACAAA
1 TACTTTT-GACACAAG
*
7091486 TACTCTT-ACACAAG
1 TACTTTTGACACAAG
* * *
7091500 TACTTTCGGCACATG
1 TACTTTTGACACAAG
7091515 TACTTTTGACACAAG
1 TACTTTTGACACAAG
7091530 TACTTTT
1 TACTTTT
7091537 AGTATGAATA
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
13 1 0.02
14 9 0.17
15 41 0.79
16 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (15 bp):
TACTTTTGACACAAG
Found at i:7091654 original size:30 final size:29
Alignment explanation
Indices: 7091613--7091672 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
7091603 ACTTTAGCAG
*
7091613 AGGTATTTTGGCATAAATACTTTTGACAT
1 AGGTATTTTGGCACAAATACTTTTGACAT
*
7091642 AGGTATCTTTGGCACAGATACTTTTGACAT
1 AGGTAT-TTTGGCACAAATACTTTTGACAT
7091672 A
1 A
7091673 AATATTTTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 6 0.21
30 22 0.79
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (29 bp):
AGGTATTTTGGCACAAATACTTTTGACAT
Found at i:7096095 original size:16 final size:15
Alignment explanation
Indices: 7096074--7096180 Score: 99
Period size: 16 Copynumber: 6.7 Consensus size: 15
7096064 ATTTGAAAGG
*
7096074 TTAAAAGATTTAAATT
1 TTAAAAAATTTAAA-T
7096090 TTAAAAAATTTAAAT
1 TTAAAAAATTTAAAT
**
7096105 TTAAAATAATCAAAAT
1 TTAAAA-AATTTAAAT
7096121 TTAAAAAAATTTAAA-
1 TT-AAAAAATTTAAAT
*
7096136 ATAAAAATTATTTAAAT
1 TTAAAAA--ATTTAAAT
*
7096153 TTAAAATAATTCAAAT
1 TTAAAA-AATTTAAAT
7096169 TTAAAATAATTT
1 TTAAAA-AATTT
7096181 TCTAAAAATA
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
14 5 0.07
15 8 0.11
16 53 0.70
17 9 0.12
18 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (15 bp):
TTAAAAAATTTAAAT
Found at i:7096119 original size:22 final size:22
Alignment explanation
Indices: 7096094--7096173 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
7096084 TAAATTTTAA
7096094 AAAATTTAAATTTAAAATAATC
1 AAAATTTAAATTTAAAATAATC
7096116 AAAATTTAAAAAAATTTAAAATAA--
1 AAAATTT----AAATTTAAAATAATC
7096140 AAATTATTTAAATTTAAAATAATTC
1 AAA--ATTTAAATTTAAAATAA-TC
7096165 -AAATTTAAA
1 AAAATTTAAA
7096174 ATAATTTTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 18
0.73 0.00 0.27
Matches are distributed among these distances:
22 27 0.55
24 5 0.10
26 17 0.35
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAATTTAAATTTAAAATAATC
Found at i:7096128 original size:32 final size:32
Alignment explanation
Indices: 7096085--7096178 Score: 116
Period size: 32 Copynumber: 2.9 Consensus size: 32
7096075 TAAAAGATTT
*
7096085 AAATTTTAAAAAATTTAAATTTAAAATAATCA
1 AAATTTAAAAAAATTTAAATTTAAAATAATCA
* * * **
7096117 AAATTTAAAAAAATTTAAAATAAAAATTATTT
1 AAATTTAAAAAAATTTAAATTTAAAATAATCA
* *
7096149 AAATTTAAAATAATTCAAATTTAAAATAAT
1 AAATTTAAAAAAATTTAAATTTAAAATAAT
7096179 TTTCTAAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (32 bp):
AAATTTAAAAAAATTTAAATTTAAAATAATCA
Found at i:7097554 original size:15 final size:16
Alignment explanation
Indices: 7097531--7097589 Score: 86
Period size: 15 Copynumber: 3.8 Consensus size: 16
7097521 ATCAAACCCT
*
7097531 AAATAAATTAAATTTA
1 AAATAATTTAAATTTA
7097547 AAATAATTTAAA-TTA
1 AAATAATTTAAATTTA
7097562 AAATAATTTAAATTTA
1 AAATAATTTAAATTTA
*
7097578 AAA-AAATTAAAT
1 AAATAATTTAAAT
7097590 CTAATATGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
15 23 0.57
16 17 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATAATTTAAATTTA
Found at i:7097573 original size:31 final size:30
Alignment explanation
Indices: 7097531--7097589 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
7097521 ATCAAACCCT
*
7097531 AAATAAATTAAATTTAAAATAATTTAAATTA
1 AAATAAATTAAATTTAAAA-AAATTAAATTA
*
7097562 AAATAATTTAAATTTAAAAAAATTAAAT
1 AAATAAATTAAATTTAAAAAAATTAAAT
7097590 CTAATATGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (30 bp):
AAATAAATTAAATTTAAAAAAATTAAATTA
Found at i:7099347 original size:16 final size:16
Alignment explanation
Indices: 7099326--7099359 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7099316 TGAAGTATAA
7099326 TATAAATAAAAAAATT
1 TATAAATAAAAAAATT
**
7099342 TATAAATATTAAAATT
1 TATAAATAAAAAAATT
7099358 TA
1 TA
7099360 AATTTTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TATAAATAAAAAAATT
Found at i:7099379 original size:6 final size:7
Alignment explanation
Indices: 7099337--7099378 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
7099327 ATAAATAAAA
7099337 AAATTTAT
1 AAATTT-T
*
7099345 AAATATT
1 AAATTTT
*
7099352 AAAATTT
1 AAATTTT
7099359 AAATTTT
1 AAATTTT
7099366 AAATTTT
1 AAATTTT
7099373 AAATTT
1 AAATTT
7099379 ATTAAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
AAATTTT
Found at i:7100254 original size:16 final size:17
Alignment explanation
Indices: 7100215--7100256 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
7100205 AATAAAATTA
* *
7100215 AAATTAATTATTTCATT
1 AAATTAAATATTTCAAT
7100232 AAA-TAAATATTT-AAT
1 AAATTAAATATTTCAAT
7100247 AAATTAAATA
1 AAATTAAATA
7100257 ATTATCTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 5 0.23
16 14 0.64
17 3 0.14
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
AAATTAAATATTTCAAT
Found at i:7100656 original size:5 final size:5
Alignment explanation
Indices: 7100648--7100688 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
7100638 GTTAAATTAA
7100648 AATTT AATTT AATTT AATTT AATTT AAAATATT AATTT AAT
1 AATTT AATTT AATTT AATTT AATTT --AAT-TT AATTT AAT
7100689 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 25 0.76
6 3 0.09
7 3 0.09
8 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (5 bp):
AATTT
Found at i:7100668 original size:15 final size:17
Alignment explanation
Indices: 7100648--7100693 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
7100638 GTTAAATTAA
7100648 AATTTAATTT-AAT-TT
1 AATTTAATTTAAATATT
7100663 AATTTAATTTAAAATATT
1 AATTTAATTT-AAATATT
*
7100681 AATTTAATATAAA
1 AATTTAATTTAAA
7100694 AATAATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 10 0.37
17 6 0.22
18 11 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTTAATTTAAATATT
Found at i:7100686 original size:23 final size:23
Alignment explanation
Indices: 7100656--7100750 Score: 71
Period size: 21 Copynumber: 4.4 Consensus size: 23
7100646 AAAATTTAAT
*
7100656 TTAATTTAATTTAATTTAAAATA
1 TTAATTAAATTTAATTTAAAATA
* *
7100679 TTAATTTAA--T-A-TAAAAATA
1 TTAATTAAATTTAATTTAAAATA
* *
7100698 ATAA-TAAATTTAATTTAAATTA
1 TTAATTAAATTTAATTTAAAATA
*
7100720 TTAA--AAATTTTATTTAAAA-A
1 TTAATTAAATTTAATTTAAAATA
7100740 TTAATCTAAAT
1 TTAAT-TAAAT
7100751 AAATCAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
18 3 0.05
19 10 0.18
20 7 0.12
21 15 0.26
22 9 0.16
23 13 0.23
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (23 bp):
TTAATTAAATTTAATTTAAAATA
Found at i:7101100 original size:15 final size:15
Alignment explanation
Indices: 7101082--7101133 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
7101072 TTAATAAATC
7101082 ATTTTTAAAATTATT
1 ATTTTTAAAATTATT
*
7101097 ATTTTAAATAAATTAATT
1 ATTTT-TA-AAATT-ATT
* *
7101115 ATATTTATAATTATT
1 ATTTTTAAAATTATT
7101130 ATTT
1 ATTT
7101134 ATTTTTATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 11 0.38
16 5 0.17
17 6 0.21
18 7 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTTAAAATTATT
Found at i:7101664 original size:25 final size:25
Alignment explanation
Indices: 7101636--7101690 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7101626 TTAATTTTAT
*
7101636 TATTGGAACAGTCATTAACTATCTA
1 TATTAGAACAGTCATTAACTATCTA
* * *
7101661 TATTAGAATAGTTATTAACTATTTA
1 TATTAGAACAGTCATTAACTATCTA
7101686 TATTA
1 TATTA
7101691 TACTTAAACG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (25 bp):
TATTAGAACAGTCATTAACTATCTA
Found at i:7103055 original size:17 final size:18
Alignment explanation
Indices: 7103035--7103068 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7103025 AGATACATTA
7103035 AATAT-ATTTAAAAATAT
1 AATATAATTTAAAAATAT
7103052 AATATAATTTAAAAATA
1 AATATAATTTAAAAATA
7103069 GAACATAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AATATAATTTAAAAATAT
Found at i:7103076 original size:18 final size:18
Alignment explanation
Indices: 7103040--7103076 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7103030 CATTAAATAT
* *
7103040 ATTTAAAAATATAATATA
1 ATTTAAAAATAGAACATA
7103058 ATTTAAAAATAGAACATA
1 ATTTAAAAATAGAACATA
7103076 A
1 A
7103077 AGCAATCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (18 bp):
ATTTAAAAATAGAACATA
Found at i:7103596 original size:28 final size:29
Alignment explanation
Indices: 7103562--7103620 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
7103552 AACATTAAGA
*
7103562 TTAAAATTGAAT-TAAA-ATATTTTAAAAT
1 TTAAAATT-AATAAAAATATATTTTAAAAT
7103590 TTAAAATTAATAAAAATATATTTTAAAAT
1 TTAAAATTAATAAAAATATATTTTAAAAT
7103619 TT
1 TT
7103621 GAGATTACGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 3 0.11
28 11 0.39
29 14 0.50
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
TTAAAATTAATAAAAATATATTTTAAAAT
Found at i:7104686 original size:14 final size:14
Alignment explanation
Indices: 7104666--7104708 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
7104656 TAAAGATTAT
7104666 AATTTTAAAAAATA
1 AATTTTAAAAAATA
* *
7104680 TATTTTAAATAATA
1 AATTTTAAAAAATA
7104694 AATTTTAAAAAATA
1 AATTTTAAAAAATA
7104708 A
1 A
7104709 TATGGGTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTTTAAAAAATA
Found at i:7105813 original size:11 final size:10
Alignment explanation
Indices: 7105794--7105828 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
7105784 AATAATAATT
7105794 TATATATTTA
1 TATATATTTA
7105804 TATCATATTTA
1 TAT-ATATTTA
*
7105815 TATATTTTTA
1 TATATATTTA
7105825 TATA
1 TATA
7105829 ATAATCATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATATTTA
Found at i:7105815 original size:19 final size:17
Alignment explanation
Indices: 7105786--7105865 Score: 74
Period size: 18 Copynumber: 4.6 Consensus size: 17
7105776 TTTTAAAAAA
7105786 TAATA-ATTTATATATT
1 TAATATATTTATATATT
7105802 TATATCATATTTATATATTT
1 TA-AT-ATATTTATATA-TT
* * *
7105822 TTATATAATAATCATATT
1 TAATATATTTAT-ATATT
*
7105840 TAAAATA-TTATATATT
1 TAATATATTTATATATT
7105856 TAATATATTT
1 TAATATATTT
7105866 TGATACGTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
16 13 0.25
17 7 0.14
18 14 0.27
19 14 0.27
20 3 0.06
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
TAATATATTTATATATT
Found at i:7105821 original size:27 final size:26
Alignment explanation
Indices: 7105790--7105865 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
7105780 AAAAAATAAT
7105790 AATTTATATATTTATATCATATTTATA
1 AATTTATATATTTATATCATATTTA-A
* * *
7105817 TATTTTTATA-TAATAATCATATTTAA
1 AATTTATATATTTAT-ATCATATTTAA
7105843 AATATTATATATTTA-AT-ATATTT
1 AAT-TTATATATTTATATCATATTT
7105866 TGATACGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
25 6 0.15
26 8 0.20
27 24 0.60
28 2 0.05
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (26 bp):
AATTTATATATTTATATCATATTTAA
Found at i:7105832 original size:44 final size:44
Alignment explanation
Indices: 7105769--7105866 Score: 105
Period size: 44 Copynumber: 2.2 Consensus size: 44
7105759 TTAATTTATA
*
7105769 TAAT-TATTTTTAAAAAATAAT-A-ATTT-ATATATTTATATCATAT
1 TAATATATTTTTAAAAAATAATCATATTTAAAATA-TTATAT-AT-T
* * *
7105812 TTATATATTTTTATATAATAATCATATTTAAAATATTATATATT
1 TAATATATTTTTAAAAAATAATCATATTTAAAATATTATATATT
7105856 TAATATATTTT
1 TAATATATTTT
7105867 GATACGTTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
43 3 0.07
44 26 0.57
45 3 0.07
46 10 0.22
47 4 0.09
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (44 bp):
TAATATATTTTTAAAAAATAATCATATTTAAAATATTATATATT
Found at i:7106287 original size:2 final size:2
Alignment explanation
Indices: 7106280--7106316 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
7106270 CTTGTTTCCA
7106280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
7106317 TTGGGTCGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7107366 original size:15 final size:15
Alignment explanation
Indices: 7107348--7107387 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
7107338 TATAGTTTAT
*
7107348 TTTATAAATAAAATA
1 TTTATTAATAAAATA
*
7107363 TTTATTAATAAAATT
1 TTTATTAATAAAATA
7107378 TTTATTAATA
1 TTTATTAATA
7107388 TATAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTATTAATAAAATA
Found at i:7107468 original size:14 final size:14
Alignment explanation
Indices: 7107449--7107480 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7107439 TTTTAATATT
*
7107449 AATATAAAATTAAA
1 AATATAAAAATAAA
7107463 AATATAAAAATAAA
1 AATATAAAAATAAA
7107477 AATA
1 AATA
7107481 AACTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
AATATAAAAATAAA
Found at i:7107504 original size:16 final size:15
Alignment explanation
Indices: 7107485--7107518 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7107475 AAAATAAACT
7107485 AAAATAACTTAAATTA
1 AAAATAACTTAAA-TA
*
7107501 AAAATAATTTAAATA
1 AAAATAACTTAAATA
7107516 AAA
1 AAA
7107519 TATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATAACTTAAATA
Found at i:7107856 original size:13 final size:16
Alignment explanation
Indices: 7107824--7107863 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
7107814 TTGATATATA
7107824 TTAATGTTATTAATTT
1 TTAATGTTATTAATTT
7107840 TTAATG-TATT-ATTT
1 TTAATGTTATTAATTT
*
7107854 TAAAT-TTATT
1 TTAATGTTATT
7107864 TATATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 12 0.55
15 4 0.18
16 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (16 bp):
TTAATGTTATTAATTT
Found at i:7107988 original size:16 final size:16
Alignment explanation
Indices: 7107956--7108016 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
7107946 TTAGACATAT
7107956 AAATTTTT-AATATTTA
1 AAATTTTTAAATA-TTA
7107972 AAATTTTTAAATATT-
1 AAATTTTTAAATATTA
***
7107987 AAATAAATAAATA-TA
1 AAATTTTTAAATATTA
7108002 AAATATTTTAAATAT
1 AAAT-TTTTAAATAT
7108017 ATGTAGTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
14 1 0.03
15 14 0.40
16 16 0.46
17 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AAATTTTTAAATATTA
Found at i:7108017 original size:16 final size:15
Alignment explanation
Indices: 7107952--7108017 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
7107942 TCAATTAGAC
7107952 ATAT-AAATTTTTAA
1 ATATAAAATTTTTAA
*
7107966 TATTTAAAATTTTTAA
1 -ATATAAAATTTTTAA
* ***
7107982 ATATTAAATAAATAA
1 ATATAAAATTTTTAA
7107997 ATATAAAATATTTTAA
1 ATATAAAAT-TTTTAA
7108013 ATATA
1 ATATA
7108018 TGTAGTAATT
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
15 21 0.54
16 18 0.46
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATAAAATTTTTAA
Found at i:7108514 original size:18 final size:17
Alignment explanation
Indices: 7108474--7108518 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
7108464 ATATTTTTAT
*
7108474 ATTTAAAATTATTAAAA
1 ATTTAATATTATTAAAA
*
7108491 AATTAATATTATGTAAAA
1 ATTTAATATTAT-TAAAA
*
7108509 TTTTAATATT
1 ATTTAATATT
7108519 TTATCAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTTAATATTATTAAAA
Found at i:7108728 original size:17 final size:17
Alignment explanation
Indices: 7108690--7108728 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7108680 TTTGAGTTGC
* *
7108690 ATTTAAATAAACTTTTA
1 ATTTAAATAAAATATTA
*
7108707 TTTTAAATAAAATATTA
1 ATTTAAATAAAATATTA
7108724 ATTTA
1 ATTTA
7108729 TTTAAGTATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAAATAAAATATTA
Found at i:7110255 original size:2 final size:2
Alignment explanation
Indices: 7110248--7110272 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7110238 TTTGCTTAAG
7110248 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7110273 GAAGAGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7111882 original size:13 final size:14
Alignment explanation
Indices: 7111857--7111886 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7111847 TTTTTTTTAA
7111857 TTATTTTATATATT
1 TTATTTTATATATT
7111871 TTATTTTA-ATATT
1 TTATTTTATATATT
7111884 TTA
1 TTA
7111887 ATAATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTTTATATATT
Found at i:7111922 original size:19 final size:20
Alignment explanation
Indices: 7111900--7111944 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7111890 ATTATTTGTA
7111900 AATATAAT-TTTTAGTT-TTT
1 AATATAATATTTTA-TTATTT
7111919 AATA-AATATTTTATTATTT
1 AATATAATATTTTATTATTT
7111938 AATATAA
1 AATATAA
7111945 ATAATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 5 0.22
19 16 0.70
20 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
AATATAATATTTTATTATTT
Found at i:7111963 original size:25 final size:28
Alignment explanation
Indices: 7111918--7111972 Score: 89
Period size: 25 Copynumber: 2.1 Consensus size: 28
7111908 TTTTAGTTTT
7111918 TAATAAATATTTTATTATTTAATATAAA
1 TAATAAATATTTTATTATTTAATATAAA
7111946 TAATAAA-A-TTTATT-TTTAATATAAA
1 TAATAAATATTTTATTATTTAATATAAA
7111971 TA
1 TA
7111973 TAATTTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 13 0.48
26 6 0.22
27 1 0.04
28 7 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (28 bp):
TAATAAATATTTTATTATTTAATATAAA
Found at i:7111979 original size:17 final size:16
Alignment explanation
Indices: 7111946--7111984 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
7111936 TTAATATAAA
* *
7111946 TAATAAAATTTATTTT
1 TAATAAAATATAATTT
7111962 TAATATAAATATAATTT
1 TAATA-AAATATAATTT
7111979 TAATAA
1 TAATAA
7111985 TTTTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATAAAATATAATTT
Found at i:7112158 original size:21 final size:21
Alignment explanation
Indices: 7112128--7112179 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7112118 ATCTTATTAT
7112128 TAAT-TTTAATATCATCACTA
1 TAATATTTAATATCATCACTA
* * *
7112148 TAATATTTAATTTTATCATTA
1 TAATATTTAATATCATCACTA
*
7112169 TAATAATTAAT
1 TAATATTTAAT
7112180 TTTATTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (21 bp):
TAATATTTAATATCATCACTA
Found at i:7112180 original size:21 final size:21
Alignment explanation
Indices: 7112141--7112190 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7112131 TTTTAATATC
* *
7112141 ATCACTATAATATTTAATTTT
1 ATCATTATAATAATTAATTTT
7112162 ATCATTATAATAATTAATTTT
1 ATCATTATAATAATTAATTTT
*
7112183 ATTATTAT
1 ATCATTAT
7112191 TATTTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (21 bp):
ATCATTATAATAATTAATTTT
Found at i:7113366 original size:3 final size:3
Alignment explanation
Indices: 7113358--7113399 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7113348 TAAAAAATTG
7113358 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7113400 TTATTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7113404 original size:3 final size:3
Alignment explanation
Indices: 7113398--7113439 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7113388 ATAATAATAA
7113398 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7113440 ATTTTTTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7114184 original size:17 final size:18
Alignment explanation
Indices: 7114164--7114209 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
7114154 AAAAATAATA
*
7114164 AAAATATAATATG-ATAT
1 AAAATATAATATGAACAT
7114181 AAAA-ATTAATATGAACAT
1 AAAATA-TAATATGAACAT
7114199 AAAATA-AATAT
1 AAAATATAATAT
7114210 ATAAATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
16 1 0.04
17 16 0.64
18 7 0.28
19 1 0.04
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (18 bp):
AAAATATAATATGAACAT
Found at i:7114184 original size:18 final size:17
Alignment explanation
Indices: 7114161--7114194 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
7114151 GATAAAAATA
7114161 ATAAAAATATAATATGAT
1 ATAAAAAT-TAATATGAT
7114179 ATAAAAATTAATATGA
1 ATAAAAATTAATATGA
7114195 ACATAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
ATAAAAATTAATATGAT
Found at i:7114200 original size:18 final size:18
Alignment explanation
Indices: 7114161--7114202 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7114151 GATAAAAATA
*
7114161 ATAAAAATATAATATGAT
1 ATAAAAATATAATATGAC
7114179 ATAAAAAT-TAATATGAAC
1 ATAAAAATATAATATG-AC
7114197 ATAAAA
1 ATAAAA
7114203 TAAATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAAAAATATAATATGAC
Found at i:7114603 original size:3 final size:3
Alignment explanation
Indices: 7114597--7114634 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7114587 CTGCTGAGAT
7114597 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7114635 GAAGATATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7115140 original size:81 final size:81
Alignment explanation
Indices: 7115004--7116278 Score: 1255
Period size: 81 Copynumber: 15.7 Consensus size: 81
7114994 TAGAAGTGGT
* * *
7115004 GATGAAGTG-GAGGAAAAGAGTTCTTCCTCATCTTCTTACATTGCACGCCTTGAAAGCAAATACA
1 GATGAAG-GAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACA
* *
7115068 AACCTGGTTATGTAGTA
65 AACCCGGTTATGTAGTG
* * ** * *
7115085 GATGAAGGAAAAGAGCAGAGTTCTTCCCCATCTTCTTCCATTTCACGCCTGGAAAGCAAATACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
* *
7115150 ACCCGGTTATGTACTT
66 ACCCGGTTATGTAGTG
* * * * * * *
7115166 GATGAA-GACGAGCAAAAGAGCTCTTCCCCGTCTGCTTAC-TTTGCACGTCTTGAAAGCAACTAC
1 GATGAAGGA-GAGGAAAAGAGTTCTTCCCCATCTTCTTACATTT-CACGCCTCGAAAGCAAATAC
*
7115229 AAACCGGGTTATGTAGTG
64 AAACCCGGTTATGTAGTG
* * * ** *
7115247 GATGAAGCAGAGGAAAAGAGTTCTTCTCCGTCTTCTTACATTTCACATCTCGAAAACAAATACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
*
7115312 ACCCGGTTATGCAGTG
66 ACCCGGTTATGTAGTG
* *
7115328 GATGAA-GACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCACGCCTGGAAAGCAAATACA
1 GATGAAGGA-GAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACA
* *
7115392 AACCCGGTTATGTACTT
65 AACCCGGTTATGTAGTG
* * * ** * *
7115409 GATGAA-GACGAGCAAAAGAGCTCTTCCCCGTCTGATTAC-TTTGCACGTCTTGAAAGCCAAA-A
1 GATGAAGGA-GAGGAAAAGAGTTCTTCCCCATCTTCTTACATTT-CACGCCTCGAAAG-CAAATA
*
7115471 CAAACCGGGTTATGTAGTG
63 CAAACCCGGTTATGTAGTG
* * * * * * ** * *
7115490 GATGAAGCAGGGGAAAAGAGTTCTTCTCCGTCTTCTTACATATCGCATCTCCAAAACAAATACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
7115555 ACCCGGTTATGTAGTG
66 ACCCGGTTATGTAGTG
7115571 GATGAA-GACGAGG-AAAGCAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATAC
1 GATGAAGGA-GAGGAAAAG-AGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATAC
* * *
7115634 AAACCTGGGTATGGAGTG
64 AAACCCGGTTATGTAGTG
* * * * *
7115652 GATGAAGCAAAGGAAAAGAGTTCTTCCTCATCTTCTTACGTTTCACGCCTCGAAAGCAAGTACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
* * *
7115717 ACCTGGTTATGGAGTA
66 ACCCGGTTATGTAGTG
* * * * *
7115733 GATGAAGCAGAGCAAAAGAGTTCTTCCTCATCTTCTTACATTGCACGTCTCGAAAGCAAATACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
* ** *
7115798 GCTGGGTTATGGAGTG
66 ACCCGGTTATGTAGTG
* * * * *
7115814 GACGAAACTGAGA-G-AACGAGTTCTTCCCCATCTAC-CATCATTTCGA-GCCTCGAAAGCAAAT
1 GATG-AA-GGAGAGGAAAAGAGTTCTTCCCCATCTTCTTA-CATTTC-ACGCCTCGAAAGCAAAT
*
7115875 ACAAACCTGGTTATGTAGTG
62 ACAAACCCGGTTATGTAGTG
* * * * * *
7115895 GATGAAGCAGAGGAAAAGAGTTCTTCACCGTCTACTTATATTTCGCGCCTCGAAAGCAAATACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
** *
7115960 ACCCAATTACGTAGTG
66 ACCCGGTTATGTAGTG
* * * * *
7115976 GATGAA-GACGAGGAAAAGAGTTCTTCCTCTTCTTCTTACATTGCACGTCTTGAAAGCAAATACA
1 GATGAAGGA-GAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACA
* *
7116040 AACCCGGTTATGGAGTA
65 AACCCGGTTATGTAGTG
* * ** * * * *
7116057 GATGAAGTAGAGGAAAAGAGTTCTTCCTCGCCTTCTTACATTGCACGCTTGGAAAGCAAATATAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
* * *
7116122 ACCGGGTTATGAAGCG
66 ACCCGGTTATGTAGTG
** *** * * * *
7116138 GACCAAACCGAGGAAAAGAGTTCTTCCCCATCTTCCTACATTGCACACCTTGAAAGCAAATACAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
*
7116203 ACCAGGTTATGTAGTG
66 ACCCGGTTATGTAGTG
* * * * * *
7116219 GATGAAGGTGAGGAAATGAATTCTTCCCCGTCTTCTTATATTGCACGCCTCGAAAGCAAA
1 GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAA
7116279 GATCGGCCTG
Statistics
Matches: 985, Mismatches: 184, Indels: 50
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.00
80 24 0.02
81 934 0.95
82 21 0.02
83 3 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (81 bp):
GATGAAGGAGAGGAAAAGAGTTCTTCCCCATCTTCTTACATTTCACGCCTCGAAAGCAAATACAA
ACCCGGTTATGTAGTG
Found at i:7115432 original size:243 final size:243
Alignment explanation
Indices: 7115004--7116278 Score: 1407
Period size: 243 Copynumber: 5.2 Consensus size: 243
7114994 TAGAAGTGGT
** * * *
7115004 GATGAAGTGGAGGAAAAGAGTTCTTCCTCATCTTCTTACATTGCACGCCTTGAAAGCAAATACAA
1 GATGAAGCAGAGGAAAAGAGTTCTTCCTCGTCTTCTTACATTGCACGTCTCGAAAGCAAATACAA
* * * * * ** * *
7115069 ACCTGGTTATGTAGTAGATGAAGGA-AAAGAGCAGAGTTCTTCCCCATCTTCTTCCATTTCACGC
66 ACCCGGTTATGGAGTGGATGAA-GACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCACGC
* * *
7115133 CTGGAAAGCAAATACAAACCCGGTTATGTACTTGATGAAGACGAGCAAAAGAGCTCTTCCCCGTC
130 CTGGAAAGCAAATACAAACCCGGTTATGTACTGGATGAAGACGAGGAAAAGAGTTCTTCCCCGTC
* *
7115198 TGCTTACTTTGCACGTCTTGAAAGCAACTACAAACCGGGTTATGTAGTG
195 TGCTTACTTTGCACGCCTTGAAAGCAAATACAAACCGGGTTATGTAGTG
* * *
7115247 GATGAAGCAGAGGAAAAGAGTTCTT-CTCCGTCTTCTTACATTTCACATCTCGAAAACAAATACA
1 GATGAAGCAGAGGAAAAGAGTTCTTCCT-CGTCTTCTTACATTGCACGTCTCGAAAGCAAATACA
*
7115311 AACCCGGTTATGCAGTGGATGAAGACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCACGC
65 AACCCGGTTATGGAGTGGATGAAGACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCACGC
* * *
7115376 CTGGAAAGCAAATACAAACCCGGTTATGTACTTGATGAAGACGAGCAAAAGAGCTCTTCCCCGTC
130 CTGGAAAGCAAATACAAACCCGGTTATGTACTGGATGAAGACGAGGAAAAGAGTTCTTCCCCGTC
* *
7115441 TGATTACTTTGCACGTCTTGAAAGCCAAA-ACAAACCGGGTTATGTAGTG
195 TGCTTACTTTGCACGCCTTGAAAG-CAAATACAAACCGGGTTATGTAGTG
* * *
7115490 GATGAAGCAGGGGAAAAGAGTTCTT-CTCCGTCTTCTTACATATCGCA--TCTCCAAAACAAATA
1 GATGAAGCAGAGGAAAAGAGTTCTTCCT-CGTCTTCTTACAT-T-GCACGTCTCGAAAGCAAATA
* *
7115552 CAAACCCGGTTATGTAGTGGATGAAGACGAGGAAAGCAGTTCTTCCCCATCTTCTTACATTTCAC
63 CAAACCCGGTTATGGAGTGGATGAAGACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCAC
* * * * * * *
7115617 GCCTCGAAAGCAAATACAAACCTGGGTATGGAGTGGATGAAG-CAAAGGAAAAGAGTTCTTCCTC
128 GCCTGGAAAGCAAATACAAACCCGGTTATGTACTGGATGAAGAC-GAGGAAAAGAGTTCTTCCCC
* * * * * * *
7115681 ATCTTCTTACGTTT-CACGCCTCGAAAGCAAGTACAAACCTGGTTATGGAGTA
192 GTCTGCTTAC-TTTGCACGCCTTGAAAGCAAATACAAACCGGGTTATGTAGTG
* *
7115733 GATGAAGCAGAGCAAAAGAGTTCTTCCTCATCTTCTTACATTGCACGTCTCGAAAGCAAATACAA
1 GATGAAGCAGAGGAAAAGAGTTCTTCCTCGTCTTCTTACATTGCACGTCTCGAAAGCAAATACAA
* ** * * * *
7115798 GCTGGGTTATGGAGTGGACGAA-ACTGA-GAGAACGAGTTCTTCCCCATCTAC-CATCATTTCGA
66 ACCCGGTTATGGAGTGGATGAAGAC-GAGGAAAAC-AGTTCTTCCCCATCTTCTTA-CATTTC-A
* * * *
7115860 -GCCTCGAAAGCAAATACAAACCTGGTTATGTAGTGGATGAAG-CAGAGGAAAAGAGTTCTTCAC
127 CGCCTGGAAAGCAAATACAAACCCGGTTATGTACTGGATGAAGAC-GAGGAAAAGAGTTCTTCCC
* * * * *** *
7115923 CGTCTACTTA-TATTTCGCGCCTCGAAAGCAAATACAAACCCAATTACGTAGTG
191 CGTCTGCTTACT-TTGCACGCCTTGAAAGCAAATACAAACCGGGTTATGTAGTG
* *
7115976 GATGAAG-ACGAGGAAAAGAGTTCTTCCTCTTCTTCTTACATTGCACGTCTTGAAAGCAAATACA
1 GATGAAGCA-GAGGAAAAGAGTTCTTCCTCGTCTTCTTACATTGCACGTCTCGAAAGCAAATACA
* * * ** *
7116040 AACCCGGTTATGGAGTAGATGAAGTA-GAGGAAAAGAGTTCTTCCTCGCCTTCTTACATTGCACG
65 AACCCGGTTATGGAGTGGATGAAG-ACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCACG
* * * * **
7116104 CTTGGAAAGCAAATATAAACCGGGTTATGAAGC-GGACCAA-ACCGAGGAAAAGAGTTCTTCCCC
129 CCTGGAAAGCAAATACAAACCCGGTTATGTA-CTGGATGAAGA-CGAGGAAAAGAGTTCTTCCCC
* * * * * *
7116167 ATCTTCCTACATTGCACACCTTGAAAGCAAATACAAACCAGGTTATGTAGTG
192 GTCTGCTTACTTTGCACGCCTTGAAAGCAAATACAAACCGGGTTATGTAGTG
** * * * * *
7116219 GATGAAGGTGAGGAAATGAATTCTTCCCCGTCTTCTTATATTGCACGCCTCGAAAGCAAA
1 GATGAAGCAGAGGAAAAGAGTTCTTCCTCGTCTTCTTACATTGCACGTCTCGAAAGCAAA
7116279 GATCGGCCTG
Statistics
Matches: 887, Mismatches: 117, Indels: 56
0.84 0.11 0.05
Matches are distributed among these distances:
241 4 0.00
242 20 0.02
243 844 0.95
244 16 0.02
245 3 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (243 bp):
GATGAAGCAGAGGAAAAGAGTTCTTCCTCGTCTTCTTACATTGCACGTCTCGAAAGCAAATACAA
ACCCGGTTATGGAGTGGATGAAGACGAGGAAAACAGTTCTTCCCCATCTTCTTACATTTCACGCC
TGGAAAGCAAATACAAACCCGGTTATGTACTGGATGAAGACGAGGAAAAGAGTTCTTCCCCGTCT
GCTTACTTTGCACGCCTTGAAAGCAAATACAAACCGGGTTATGTAGTG
Found at i:7119944 original size:85 final size:85
Alignment explanation
Indices: 7119779--7119945 Score: 239
Period size: 85 Copynumber: 2.0 Consensus size: 85
7119769 AAAGGCACAT
* * * *
7119779 AAAGTTAATTTAAATATGTAGTAATAGGCACTTGCTTTGCTTCTTTACTTGAGTTAGGTTTTATT
1 AAAGTTAATTTAAATACGTAGTAATAAGCACTTGCTTTGCTTCTTTACTTGAATTAGGTTCTATT
* * *
7119844 TGGATAGGCAGTTAGTTCCC
66 TAGAGAAGCAGTTAGTTCCC
7119864 AAAGTTAATTTAAATACGTAGTAATAAGCACTTGCTTTGCTTCTTTACTTGAATTAGGTTCCT-T
1 AAAGTTAATTTAAATACGTAGTAATAAGCACTTGCTTTGCTTCTTTACTTGAATTAGGTT-CTAT
7119928 TTAGAGAAGC-GATTAGTT
65 TTAGAGAAGCAG-TTAGTT
7119946 TGATTCCAGT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
84 1 0.01
85 71 0.97
86 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (85 bp):
AAAGTTAATTTAAATACGTAGTAATAAGCACTTGCTTTGCTTCTTTACTTGAATTAGGTTCTATT
TAGAGAAGCAGTTAGTTCCC
Found at i:7121091 original size:17 final size:18
Alignment explanation
Indices: 7121069--7121102 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7121059 TTTAAATAAA
7121069 AAATATTATTTT-AATTT
1 AAATATTATTTTGAATTT
7121086 AAATATTATTTTGAATT
1 AAATATTATTTTGAATT
7121103 GAATTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
AAATATTATTTTGAATTT
Found at i:7122190 original size:13 final size:13
Alignment explanation
Indices: 7122172--7122196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7122162 TCACAATTTG
7122172 TATCGATACATTA
1 TATCGATACATTA
7122185 TATCGATACATT
1 TATCGATACATT
7122197 CTAGGTTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:7122237 original size:20 final size:20
Alignment explanation
Indices: 7122212--7122298 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
7122202 TTTACCCAAA
*
7122212 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
7122232 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
7122252 TGTATCGAT--A-----CAT
1 TGTATCGATACATTGCTCAT
*
7122265 TGTATCGATACAATGCTCAT
1 TGTATCGATACATTGCTCAT
7122285 TGTATCGATACATT
1 TGTATCGATACATT
7122299 TTACAATGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
13 12 0.21
15 1 0.02
18 1 0.02
20 42 0.74
21 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:7122265 original size:13 final size:13
Alignment explanation
Indices: 7122249--7122276 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7122239 ATACATTGCT
7122249 CATTGTATCGATA
1 CATTGTATCGATA
7122262 CATTGTATCGATA
1 CATTGTATCGATA
7122275 CA
1 CA
7122277 ATGCTCATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:7122271 original size:33 final size:33
Alignment explanation
Indices: 7122229--7122298 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
7122219 ATACATTTTG
*
7122229 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACAATGCTCATTGTATCGATA
7122262 CATTGTATCGATACAATGCTCATTGTATCGATA
1 CATTGTATCGATACAATGCTCATTGTATCGATA
7122295 CATT
1 CATT
7122299 TTACAATGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (33 bp):
CATTGTATCGATACAATGCTCATTGTATCGATA
Found at i:7122309 original size:53 final size:53
Alignment explanation
Indices: 7122212--7122318 Score: 137
Period size: 53 Copynumber: 2.0 Consensus size: 53
7122202 TTTACCCAAA
** * *
7122212 TGTATCGATACATTTTGCATTGTATCGATACATTGCTCATTGTATCGATACAT
1 TGTATCGATACATGCTGCATTGTATCGATACATTGCTCAATGTATAGATACAT
*
7122265 TGTATCGATACAATGCT-CATTGTATCGATACATT-TTACAATGTATAGATACAT
1 TGTATCGATAC-ATGCTGCATTGTATCGATACATTGCT-CAATGTATAGATACAT
7122318 T
1 T
7122319 CAGGCATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 43 0.91
54 3 0.06
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (53 bp):
TGTATCGATACATGCTGCATTGTATCGATACATTGCTCAATGTATAGATACAT
Found at i:7124783 original size:51 final size:51
Alignment explanation
Indices: 7124622--7124773 Score: 171
Period size: 51 Copynumber: 3.0 Consensus size: 51
7124612 TTTTATCTCA
* ** * **
7124622 GGGATACTCCAA-TCCCGGTTCCATTTCCAAAACGTCAATTTTTCTTAATCG
1 GGGATACTCCAACT-CCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
* * * ** *
7124673 GGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCGCAATCG
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
*
7124724 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATC
7124774 AAGGGTACTC
Statistics
Matches: 82, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
51 81 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
Found at i:7124835 original size:28 final size:27
Alignment explanation
Indices: 7124779--7124845 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 27
7124769 CAATCAAGGG
*
7124779 TACTCTAACCCCGTTATTTCATCGGGGA
1 TACTCCAACCCCGTTATTT-ATCGGGGA
7124807 TACTCCAACCCCGTTATTT-TCGAGAGGA
1 TACTCCAACCCCGTTATTTATCG-G-GGA
7124835 TACTCCAACCC
1 TACTCCAACCC
7124846 TGGCTTTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
26 3 0.08
27 1 0.03
28 32 0.89
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (27 bp):
TACTCCAACCCCGTTATTTATCGGGGA
Found at i:7124920 original size:28 final size:28
Alignment explanation
Indices: 7124880--7124963 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 28
7124870 TTTTTTCATA
*
7124880 ATCGGGGGTACTCCAACCCCGTTATTTT
1 ATCGGGGATACTCCAACCCCGTTATTTT
* * * *
7124908 ATCGGGGATACTCTAATCTCATTA-TTT
1 ATCGGGGATACTCCAACCCCGTTATTTT
7124935 -TCGATGGGATACTCCAACCCCG--ATTTT
1 ATCG--GGGATACTCCAACCCCGTTATTTT
7124962 AT
1 AT
7124964 TTCTAAAATA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
26 4 0.09
27 6 0.14
28 33 0.77
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTT
Found at i:7124981 original size:109 final size:108
Alignment explanation
Indices: 7124724--7124982 Score: 308
Period size: 109 Copynumber: 2.4 Consensus size: 108
7124714 ACCGCAATCG
* * * *
7124724 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAA--TTTTTCACAATCAAGGGTACTCTAA
1 GGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTTTCACAATCAAGGGTACTCCAA
*
7124787 CCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTTTCGA
66 CCCCGTTATTTCATCGGGGATACTCCAACCCCATTATTTTCGA
* ** * ** * **
7124830 GAGGATACTCCAACCCTGGCTTTATATCTAAAAATA-TTATTTTTTTCATAATCGGGGGTACTCC
1 G-GGATACTCCAACCCCGATTTTATTTCT-AAAATACCAATTTTTTTCACAATCAAGGGTACTCC
* * * *
7124894 AACCCCGTTATTTTATCGGGGATACTCTAATCTCATTATTTTCGA
64 AACCCCGTTATTTCATCGGGGATACTCCAACCCCATTATTTTCGA
7124939 TGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTT
1 -GGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTT
7124983 CACGAATCGG
Statistics
Matches: 123, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
106 1 0.01
107 22 0.18
108 11 0.09
109 88 0.72
110 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (108 bp):
GGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTTTCACAATCAAGGGTACTCCAA
CCCCGTTATTTCATCGGGGATACTCCAACCCCATTATTTTCGA
Found at i:7125164 original size:131 final size:131
Alignment explanation
Indices: 7124929--7125164 Score: 289
Period size: 131 Copynumber: 1.8 Consensus size: 131
7124919 TCTAATCTCA
* * * * *
7124929 TTATTTTCGATGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACGAATCGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTACTTCCAAAACACCAATTTTTCACGAATCAGG
* * * **
7124994 GATACTTCAACTCCGATTTTATTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCAACCTT
66 GATACTTCAACCCCGATTTTATGTCCAAAATACAAATTTTCTATAATCAGGGATACTCCAACCTT
7125059 G
131 G
** *
7125060 TTATTTTCGAGGGGATACTCCAACCCCGATTTTACTTCCAAAACACTGATTTTTCA-TAATCAGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTACTTCCAAAACACCAATTTTTCACGAATCAGG
* *
7125124 GATAC-TCTAGCCCCG-TTGTTATGTCCAAAATATTAAATTTT
66 GATACTTC-AACCCCGATT-TTATGTCCAAAATA-CAAATTTT
7125165 TCGTCGGAAG
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
129 4 0.05
130 28 0.32
131 55 0.63
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (131 bp):
TTATTTTCGAGGGGATACTCCAACCCCGATTTTACTTCCAAAACACCAATTTTTCACGAATCAGG
GATACTTCAACCCCGATTTTATGTCCAAAATACAAATTTTCTATAATCAGGGATACTCCAACCTT
G
Found at i:7136297 original size:11 final size:11
Alignment explanation
Indices: 7136268--7136329 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 11
7136258 CATTCTTTTT
*
7136268 AAAAGAAACAA
1 AAAAAAAACAA
*
7136279 CAACAAAAA-AA
1 -AAAAAAAACAA
*
7136290 CAAAAAAACAA
1 AAAAAAAACAA
7136301 AAAACAAAACAA
1 AAAA-AAAACAA
*
7136313 AAAAAAAGAGAA
1 AAAAAAA-ACAA
7136325 AAAAA
1 AAAAA
7136330 GAAGAATTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
10 6 0.15
11 10 0.24
12 25 0.61
ACGTcount: A:0.84, C:0.11, G:0.05, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:7136314 original size:19 final size:19
Alignment explanation
Indices: 7136277--7136317 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
7136267 TAAAAGAAAC
*
7136277 AACAACAAAAAAACAAAAA
1 AACAAAAAAAAAACAAAAA
7136296 AACAAAAAACAAAACAAAAA
1 AACAAAAAA-AAAACAAAAA
7136316 AA
1 AA
7136318 AAGAGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (19 bp):
AACAAAAAAAAAACAAAAA
Found at i:7136329 original size:15 final size:14
Alignment explanation
Indices: 7136268--7136329 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 14
7136258 CATTCTTTTT
* *
7136268 AAAAGAAACAACAA
1 AAAAAAAACAAAAA
*
7136282 CAAAAAAACAAAAA
1 AAAAAAAACAAAAA
7136296 AACAAAAAACAAAACA
1 AA-AAAAAACAAAA-A
* *
7136312 AAAAAAAAGAGAAA
1 AAAAAAAACAAAAA
7136326 AAAA
1 AAAA
7136330 GAAGAATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 17 0.43
15 20 0.50
16 3 0.08
ACGTcount: A:0.84, C:0.11, G:0.05, T:0.00
Consensus pattern (14 bp):
AAAAAAAACAAAAA
Found at i:7136332 original size:8 final size:8
Alignment explanation
Indices: 7136280--7136329 Score: 59
Period size: 8 Copynumber: 6.2 Consensus size: 8
7136270 AAGAAACAAC
7136280 AACAAAAA
1 AACAAAAA
7136288 AACAAAAA
1 AACAAAAA
7136296 AAC-AAAA
1 AACAAAAA
7136303 AACAAAACA
1 AACAAAA-A
7136312 AA-AAAAA
1 AACAAAAA
*
7136319 AGAGAAAAA
1 A-ACAAAAA
7136328 AA
1 AA
7136330 GAAGAATTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
7 9 0.24
8 20 0.53
9 9 0.24
ACGTcount: A:0.86, C:0.10, G:0.04, T:0.00
Consensus pattern (8 bp):
AACAAAAA
Found at i:7137469 original size:55 final size:55
Alignment explanation
Indices: 7137404--7137660 Score: 261
Period size: 55 Copynumber: 4.5 Consensus size: 55
7137394 CTCCTTTCAC
*
7137404 CCTTT-AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACATAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTGGCA
* *
7137458 CCTTTCAGTCCTCCAAGAGCAGGATGCCTTTCAAAGCCCACACT-AGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA-TAAGTTGGTGGCA
* * * * * *
7137513 CCCTCCAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTAAAAGCCCACACAAGCTGATGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACG-C-----CTTTCAAAGCCCACATAAGTTGGTGGCA
*
7137574 -CTTTCAGTCCTCGAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACATAAGTTGGTGGCA
*
7137634 -CTTCCTAGTCCTCAAAGAGCAGGACGC
1 CCTTTC-AGTCCTCAAAGAGCAGGACGC
7137661 TCTCTCCTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
54 8 0.05
55 67 0.40
56 2 0.01
59 1 0.01
60 46 0.28
61 43 0.26
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACATAAGTTGGTGGCA
Found at i:7137612 original size:61 final size:59
Alignment explanation
Indices: 7137429--7137670 Score: 251
Period size: 60 Copynumber: 4.1 Consensus size: 59
7137419 GAGCAAGACG
* * * * *
7137429 CCTTTCAAAGCCCACATAAGTTGGTGGCACCTTTCAGTCCTCCAAGAGCAGGA----T-G
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCTTCT
* * * *
7137484 CCTTTCAAAGCCCACACTAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG-CTTCT
* * * * * *
7137545 TCTTTAAAAGCCCACACAAGCTGATGGCACTTTCAGTCCTCGAAGAGCAGGACGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACG-CTTCT
*
7137605 CCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACGCT-TCT
7137666 CCTTT
1 CCTTT
7137671 CGCCTTTTTG
Statistics
Matches: 156, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
55 48 0.31
60 57 0.37
61 51 0.33
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (59 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACGCTTCT
Found at i:7137644 original size:121 final size:116
Alignment explanation
Indices: 7137430--7137659 Score: 304
Period size: 121 Copynumber: 1.9 Consensus size: 116
7137420 AGCAAGACGC
* * * * *
7137430 CTTTCAAAGCCCACATAAGTTGGTGGCACCTTTCAGTCCTCCAAGAGCAGGATGCCTTTCAAAGC
1 CTTTAAAAGCCCACACAAGCTGATGGCACCTTTCAGTCCTCCAAGAGCAGGACGCCTTTCAAAGC
7137495 CCACACTAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTCTTTTT
66 CCACACTAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTCTTTTT
*
7137546 CTTTAAAAGCCCACACAAGCTGATGGCA-CTTTCAGTCCTCGAAGAGCAGGACGCCTTCTCCTTT
1 CTTTAAAAGCCCACACAAGCTGATGGCACCTTTCAGTCCTCCAAGAGCAGGACGCCTT-T-C---
*
7137610 TAAAGCCCACA-TAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
61 -AAAGCCCACACT-AGTTGGTGGCACCCTCC-AGTCCTCAAAGAGCAGGACG
7137660 CTCTCTCCTT
Statistics
Matches: 99, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
115 27 0.27
116 25 0.25
117 1 0.01
120 5 0.05
121 41 0.41
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (116 bp):
CTTTAAAAGCCCACACAAGCTGATGGCACCTTTCAGTCCTCCAAGAGCAGGACGCCTTTCAAAGC
CCACACTAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGTCTTTTT
Found at i:7137843 original size:215 final size:215
Alignment explanation
Indices: 7137465--7137875 Score: 578
Period size: 215 Copynumber: 1.9 Consensus size: 215
7137455 GCACCTTTCA
* * ** *
7137465 GTCCTCCAAGAGCAGGATGCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTCCAGTCCTCAAAG
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGCTGGTGGCACCCTCCAGTCCTCAAAG
* * * *
7137530 AGCAGGACGTCTTTTTCTTTAAAAGCCCACACAAGCTGATGGCACTTTCAGTCCTCGAAGAGCAG
66 AGCAGGACGCCTTCTCCTTTAAAAGCCCACACAAGCTGATGGCACTTTCAGTCCTCAAAGAGCAG
*
7137595 GACGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGAC
131 GACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGAC
7137659 GCTCTCTCCTTTCGCCTTTTT
195 GCTCTCTCCTTTCGCCTTTTT
* *
7137680 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAAAAGCTGGTGGCA-CCTTCAGTCCTCAAAG
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGCTGGTGGCACCCTCCAGTCCTCAAAG
* * * *
7137744 AGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTTAAAGAGCA
66 AGCAGGACGCCTTCTCCTTTAAAAGCCCACACAAGCTGATGGCAC-TTTCAGTCCTCAAAGAGCA
* * * *
7137809 GGATG-CTT-TCTTTTTGCAAAGCCCACACAAGTTGGTGGTACCTTCTAGTCCTCAAAGGGCAGG
130 GGACGCCTTCTCCTTTT--AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGG
7137872 ACGC
193 ACGC
7137876 CTTTTCTTTT
Statistics
Matches: 172, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
213 6 0.03
214 57 0.33
215 106 0.62
216 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (215 bp):
GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGCTGGTGGCACCCTCCAGTCCTCAAAG
AGCAGGACGCCTTCTCCTTTAAAAGCCCACACAAGCTGATGGCACTTTCAGTCCTCAAAGAGCAG
GACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACG
CTCTCTCCTTTCGCCTTTTT
Found at i:7137891 original size:122 final size:121
Alignment explanation
Indices: 7137705--7137933 Score: 363
Period size: 122 Copynumber: 1.9 Consensus size: 121
7137695 GACGCCTTTT
7137705 AAAGCCCACAAAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGC
1 AAAGCCCACAAAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGC
7137770 CCACACAAGTTGGTGGCACTTTTCAGTCCTT-AAAGAGCAGGATGCTTTCTTTTTGC
66 CCACACAAGTTGGTGGCACTTTTCAGT-CTTCAAAGAGCAGGATGCTTTCTTTTTGC
* * * * *
7137826 AAAGCCCACACAAGTTGGTGGTACCTTCTAGTCCTCAAAGGGCAGGACGCCTT-TTCTTTTCAAA
1 AAAGCCCACAAAAGCTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTT-AAA
*
7137890 GCCCACACGAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGA
64 GCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGA
7137934 CGCACTTTAT
Statistics
Matches: 99, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
121 34 0.34
122 65 0.66
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (121 bp):
AAAGCCCACAAAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGC
CCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGATGCTTTCTTTTTGC
Found at i:7137947 original size:61 final size:60
Alignment explanation
Indices: 7137680--7137941 Score: 306
Period size: 61 Copynumber: 4.4 Consensus size: 60
7137670 TCGCCTTTTT
* *
7137680 GTCCTCAAAGAGCAGGACG-----CCTTTT-AAAGCCCACAAAAGCTGGTGGCACCTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCA
*
7137734 GTCCTCAAAGAGCAGGACGCCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTT-TCCTTTTCAAAGCCCACACAAGTTGGTGGCAC-CTTCA
* * * *
7137795 GTCCTTAAAGAGCAGGATG-CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGTACCTTCTA
1 GTCCTCAAAGAGCAGGACGCCTTTCCTTTT-CAAAGCCCACACAAGTTGGTGGCACCTTC-A
* * * *
7137856 GTCCTCAAAGGGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCAC-CTTCA
*
7137917 GTCTTCAAAGAGCAGGACGCACTTT
1 GTCCTCAAAGAGCAGGACGC-CTTT
7137942 ATTTTCCTTT
Statistics
Matches: 177, Mismatches: 18, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
54 19 0.11
59 6 0.03
60 34 0.19
61 103 0.58
62 15 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (60 bp):
GTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCA
Found at i:7138758 original size:20 final size:20
Alignment explanation
Indices: 7138733--7138787 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
7138723 TTTTCACAAT
*
7138733 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGCTCA
7138753 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGCTCA
7138773 TTGTATCGATACATT
1 TTGTATCGATACATT
7138788 TTATAATGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (20 bp):
TTGTATCGATACATTGCTCA
Found at i:7138797 original size:20 final size:19
Alignment explanation
Indices: 7138733--7138803 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 19
7138723 TTTTCACAAT
7138733 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTT-A
*
7138753 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTG-TTA
7138773 TTGTATCGATACATT-TTA
1 TTGTATCGATACATTGTTA
7138791 TAATGTATCGATA
1 T--TGTATCGATA
7138804 TATTCAAGCA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.07
20 42 0.91
21 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (19 bp):
TTGTATCGATACATTGTTA
Found at i:7142399 original size:80 final size:78
Alignment explanation
Indices: 7142066--7142403 Score: 351
Period size: 79 Copynumber: 4.3 Consensus size: 78
7142056 TGGAGATAAC
* * * * * * *
7142066 AACGGGGCTGAAGTATCCCCGATTATGGAAAATTG-ATGTTCCAGAAATAAAATCGGGGTTAGAG
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAATTGTAT-TT-TAGAAATAAAATCGGGGTTGGAG
*
7142130 TATCCTCTCGGAAAT
64 TATCCCCTCGGAAAT
* * * * * *
7142145 AACAGGGCTAGAGTATCCATGATTAT-AAAAATCTGTATTTT-GAAAATGAAATCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAAT-TGTATTTTAG-AAATAAAATCGGGGTTGGAG
*
7142208 TATCCCCTCGAAAAT
64 TATCCCCTCGGAAAT
* * * *
7142223 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTG-ATGATTTAGAAATAAGACCGGGGTTGAAG
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAATTGTAT--TTTAGAAATAAAATCGGGGTTGGAG
* * *
7142287 TTTTCCCTTGGAAAT
64 TATCCCCTCGGAAAT
* *
7142302 AATGGGGTTGGAGTATCCCTTATTGTGAAAAATTAGTATTTTAGAAATAAAAATCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAATT-GTATTTTAGAAAT-AAAATCGGGGTTGGAG
7142367 TATCCCCTCGGAAAT
64 TATCCCCTCGGAAAT
*
7142382 AACGGGATTGGAGTATCCCTGA
1 AACGGGGTTGGAGTATCCCTGA
7142404 GATGAAAAAT
Statistics
Matches: 212, Mismatches: 37, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
77 3 0.01
78 58 0.27
79 101 0.48
80 48 0.23
81 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
AACGGGGTTGGAGTATCCCTGATTGTGAAAAATTGTATTTTAGAAATAAAATCGGGGTTGGAGTA
TCCCCTCGGAAAT
Found at i:7144737 original size:20 final size:20
Alignment explanation
Indices: 7144723--7144777 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
7144713 ATACATTGTA
7144723 AAATGTATCGATACAATGAG
1 AAATGTATCGATACAATGAG
*
7144743 CAATGTATCGATACAATGAG
1 AAATGTATCGATACAATGAG
* *
7144763 CAATGTATCAATACA
1 AAATGTATCGATACA
7144778 TCTGGGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (20 bp):
AAATGTATCGATACAATGAG
Found at i:7144840 original size:13 final size:13
Alignment explanation
Indices: 7144793--7144822 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7144783 GTAAACCCAG
7144793 AATGTATCGATAC
1 AATGTATCGATAC
*
7144806 AATGTATCGATAT
1 AATGTATCGATAC
7144819 AATG
1 AATG
7144823 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:7145221 original size:51 final size:51
Alignment explanation
Indices: 7145140--7145308 Score: 155
Period size: 51 Copynumber: 3.3 Consensus size: 51
7145130 AGGTGTCTAC
* * ** **
7145140 ATCGGGAATACTCCAA-TCTCGGTTCCATTTCCTAAACATCAATTTTTCTTA
1 ATCGGGGATACTCCAACTC-CGATTTTATTTCCTAAACATCAATTTTTCGCA
* **
7145191 ATCGGGGATACTCCAACTCCGATTTTATTT-CTAAAGCATCGATTTACCGCA
1 ATCGGGGATACTCCAACTCCGATTTTATTTCCTAAA-CATCAATTTTTCGCA
* * * * *
7145242 ATCGGGGATACTCCAACTCCGATTTTATTGCCAAAATACCAATTTTTCACA
1 ATCGGGGATACTCCAACTCCGATTTTATTTCCTAAACATCAATTTTTCGCA
**
7145293 ATTTGGG-TACTCCAAC
1 ATCGGGGATACTCCAAC
7145309 CCCATTATTT
Statistics
Matches: 96, Mismatches: 19, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
50 14 0.15
51 76 0.79
52 6 0.06
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
ATCGGGGATACTCCAACTCCGATTTTATTTCCTAAACATCAATTTTTCGCA
Found at i:7145368 original size:28 final size:27
Alignment explanation
Indices: 7145300--7145368 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
7145290 ACAATTTGGG
*
7145300 TACTCCAACCCCATTATTTCATCGGAGA
1 TACTCCAACCCCGTTATTT-ATCGGAGA
*
7145328 TACTCCAACCCCGTTATTT-TTGAGAGGA
1 TACTCCAACCCCGTTATTTATCG-GA-GA
7145356 TACTCCAACCCCG
1 TACTCCAACCCCG
7145369 GCTTTATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 2 0.05
27 2 0.05
28 33 0.89
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.28
Consensus pattern (27 bp):
TACTCCAACCCCGTTATTTATCGGAGA
Found at i:7145520 original size:108 final size:106
Alignment explanation
Indices: 7145247--7145524 Score: 342
Period size: 108 Copynumber: 2.6 Consensus size: 106
7145237 CCGCAATCGG
* * * **
7145247 GGATACTCCAACTCCGATTTTATTGCCAAAATACCAATTTTTCACAATTTGGGTACTCCAACCCC
1 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCGGGGTACTCCAACCCC
7145312 ATTATTTCATCGGAGATACTCCAACCCCGTTATTTTTGAGA
66 ATTATTTCATCGGAGATACTCCAACCCCGTTATTTTTGAGA
** * ** * *
7145353 GGATACTCCAACCCCGGCTTTATATCTAAAAATATTATTGTTTTCATAATCGGGGTACTCCAACC
1 GGATACTCCAACCCCGATTTTATTTCT-AAAATACCAAT-TTTTCACAATCGGGGTACTCCAACC
* * * * * *
7145418 CCGTTATTTCATTGGGGATACTCTAATCTCGTTATTTTTGAG-
64 CCATTATTTCATCGGAGATACTCCAACCCCGTTATTTTTGAGA
7145460 GAGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAAATCGGGGATACTCCAAC
1 G-GATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCAC-AATCGGGG-TACTCCAAC
7145525 TCTAATTTTA
Statistics
Matches: 142, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
106 27 0.19
107 25 0.18
108 90 0.63
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (106 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCGGGGTACTCCAACCCC
ATTATTTCATCGGAGATACTCCAACCCCGTTATTTTTGAGA
Found at i:7145575 original size:51 final size:52
Alignment explanation
Indices: 7145462--7145576 Score: 137
Period size: 52 Copynumber: 2.2 Consensus size: 52
7145452 TTTTTGAGGA
* *
7145462 GATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAAATCGGG
1 GATACTCCAACCCCAATTTTATTTCTAAAATACCAATTTTTCACAAATCAGG
* * * *
7145514 GATACTCCAACTCTAATTTTATTT-TCAAAATACCGA-TTTTCTA-TAATCAGG
1 GATACTCCAACCCCAATTTTATTTCT-AAAATACCAATTTTTC-ACAAATCAGG
7145565 GATACTCCAACC
1 GATACTCCAACC
7145577 TTGTTATTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
51 23 0.43
52 31 0.57
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (52 bp):
GATACTCCAACCCCAATTTTATTTCTAAAATACCAATTTTTCACAAATCAGG
Found at i:7149305 original size:22 final size:23
Alignment explanation
Indices: 7149277--7149323 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
7149267 TTAAATTTTT
7149277 AATTTTATTAAT-TAAAT-ATTAA
1 AATTTTA-TAATATAAATGATTAA
*
7149299 AATTTTATAATATAATTGATTAA
1 AATTTTATAATATAAATGATTAA
7149322 AA
1 AA
7149324 AAATATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 11 0.50
23 7 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
AATTTTATAATATAAATGATTAA
Found at i:7149701 original size:3 final size:3
Alignment explanation
Indices: 7149693--7149729 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7149683 CATTATTTAC
7149693 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7149730 ATGATAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7150744 original size:3 final size:3
Alignment explanation
Indices: 7150736--7150774 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
7150726 ATTTACGAGA
7150736 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7150775 CTAAGAGCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7151316 original size:13 final size:14
Alignment explanation
Indices: 7151288--7151317 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7151278 GGAGTAACTA
7151288 TTGCAGACATTTTT
1 TTGCAGACATTTTT
7151302 TTGCAGACATTTTT
1 TTGCAGACATTTTT
7151316 TT
1 TT
7151318 CCATAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (14 bp):
TTGCAGACATTTTT
Found at i:7157555 original size:42 final size:42
Alignment explanation
Indices: 7157487--7157616 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 42
7157477 TCACTCTTCC
* *
7157487 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCCCCTCTCTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCCCCTCTCTCTATT
* * *
7157529 ATCTCTCTTGTCTCTCCTCCTATCAT-CCCTC-CTATCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCCCCTCTCTCTATT
* * *
7157569 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTTT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCCCCTCTCTCTATT
*
7157611 TTCTCT
1 ATCTCT
7157617 TTGAGGGCTA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
40 32 0.44
41 7 0.10
42 27 0.37
43 7 0.10
ACGTcount: A:0.08, C:0.45, G:0.02, T:0.45
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCCCCTCTCTCTATT
Found at i:7160199 original size:2 final size:2
Alignment explanation
Indices: 7160187--7160222 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
7160177 ATTTCTTCAC
*
7160187 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7160223 ATAAGATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7164981 original size:12 final size:13
Alignment explanation
Indices: 7164943--7164983 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
7164933 AAAAGAAACC
*
7164943 TTATTTATATATA
1 TTATATATATATA
7164956 -TATATATATATA
1 TTATATATATATA
*
7164968 TTATGTAT-TATA
1 TTATATATATATA
7164980 TTAT
1 TTAT
7164984 TAAATAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 19 0.76
13 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
TTATATATATATA
Found at i:7168385 original size:23 final size:25
Alignment explanation
Indices: 7168345--7168393 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 25
7168335 ATATAAAAAT
7168345 ATATATGAAATAAAATAA-ATTATTA
1 ATATATGAAATAAAATAATATT-TTA
*
7168370 ATATAT-AAA-AATATAATATTTTA
1 ATATATGAAATAAAATAATATTTTA
7168393 A
1 A
7168394 CTACAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 10 0.45
24 6 0.27
25 6 0.27
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (25 bp):
ATATATGAAATAAAATAATATTTTA
Found at i:7168389 original size:21 final size:21
Alignment explanation
Indices: 7168333--7168389 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
7168323 GAATACACGT
*
7168333 ATATATAAAAATAT-ATA-TG
1 ATATATAAAAATATAATATTA
7168352 A-A-AT-AAAATA-AATTATTA
1 ATATATAAAAATATAA-TATTA
7168370 ATATATAAAAATATAATATT
1 ATATATAAAAATATAATATT
7168390 TTAACTACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
16 7 0.23
17 4 0.13
18 3 0.10
19 2 0.07
20 2 0.07
21 10 0.33
22 2 0.07
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATATAAAAATATAATATTA
Found at i:7168999 original size:15 final size:15
Alignment explanation
Indices: 7168974--7169013 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
7168964 TATGAATACA
7168974 TTTTT-TTTCTTT-T
1 TTTTTCTTTCTTTCT
7168987 TTTCTTCTTTCTTTCT
1 TTT-TTCTTTCTTTCT
7169003 TTTTTCTTTCT
1 TTTTTCTTTCT
7169014 GTCCTTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.12
14 2 0.08
15 15 0.62
16 4 0.17
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTTCTTTCT
Found at i:7169003 original size:19 final size:20
Alignment explanation
Indices: 7168979--7169025 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7168969 ATACATTTTT
*
7168979 TTTCTTTTTTTC-TTCTTTC
1 TTTCTTTTTTTCTTTCTGTC
7168998 TTTC-TTTTTTCTTTCTGTC
1 TTTCTTTTTTTCTTTCTGTC
*
7169017 CTTCTTTTT
1 TTTCTTTTT
7169026 CACCTATGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.29
19 13 0.54
20 4 0.17
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTCTTTTTTTCTTTCTGTC
Found at i:7169249 original size:16 final size:16
Alignment explanation
Indices: 7169230--7169320 Score: 71
Period size: 16 Copynumber: 5.6 Consensus size: 16
7169220 GAAATTTTTT
7169230 ATATATAAAATAAAAA
1 ATATATAAAATAAAAA
7169246 ATATATAAAATAAAATA
1 ATATATAAAATAAAA-A
*
7169263 A-ATTATTAATATATTAAAA
1 ATA-TA-TAA-A-ATAAAAA
* *
7169282 ATATATAAAA-ATATA
1 ATATATAAAATAAAAA
* *
7169297 ATATTTTAAATAAAAA
1 ATATATAAAATAAAAA
7169313 AT-TATAAA
1 ATATATAAA
7169321 TGCTAACATA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
15 14 0.24
16 22 0.38
17 5 0.09
18 6 0.10
19 5 0.09
20 6 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATAAAATAAAAA
Found at i:7169335 original size:22 final size:22
Alignment explanation
Indices: 7169284--7169337 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
7169274 TATTAAAAAT
* **
7169284 ATATAAAAATATAATATTTTAA
1 ATATAAAATTATAATATGCTAA
*
7169306 ATAAAAAATTATAA-ATGCTAA
1 ATATAAAATTATAATATGCTAA
7169327 CATATAAAATT
1 -ATATAAAATT
7169338 TTTTTATAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAAATTATAATATGCTAA
Found at i:7169363 original size:8 final size:8
Alignment explanation
Indices: 7169350--7169398 Score: 53
Period size: 8 Copynumber: 5.6 Consensus size: 8
7169340 TTTATAAATT
7169350 TTTTTTTC
1 TTTTTTTC
7169358 TTTTTTTCC
1 TTTTTTT-C
7169367 TCTTTCTTTC
1 T-TTT-TTTC
7169377 TTTTTTTTC
1 -TTTTTTTC
*
7169386 TTTCTTTC
1 TTTTTTTC
7169394 TTTTT
1 TTTTT
7169399 GTTCACCACG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
8 18 0.51
9 6 0.17
10 7 0.20
11 4 0.11
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:7169387 original size:17 final size:18
Alignment explanation
Indices: 7169354--7169398 Score: 74
Period size: 17 Copynumber: 2.5 Consensus size: 18
7169344 TAAATTTTTT
7169354 TTTCTTTTTTTCCTCTTTC
1 TTTCTTTTTTT-CTCTTTC
7169373 TTTCTTTTTTT-TCTTTC
1 TTTCTTTTTTTCTCTTTC
7169390 TTTCTTTTT
1 TTTCTTTTT
7169399 GTTCACCACG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 15 0.58
19 11 0.42
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTCTTTTTTTCTCTTTC
Found at i:7169541 original size:41 final size:41
Alignment explanation
Indices: 7169496--7169627 Score: 126
Period size: 41 Copynumber: 3.2 Consensus size: 41
7169486 ATAGATATAG
7169496 ATATAAATTACATAAATTTATAATATTTTAAATAATAAAAA
1 ATATAAATTACATAAATTTATAATATTTTAAATAATAAAAA
* * * * * * *
7169537 ATATAAATT-CTTAATTTTTTTCATATATAAAATAATAAATAT
1 ATATAAATTACATAA-ATTTATAATATTTTAAATAATAAA-AA
* *
7169579 ATAAAAATTAACATAAA-ATATAATATTTTAAAT-ATAAAAA
1 ATATAAATT-ACATAAATTTATAATATTTTAAATAATAAAAA
7169619 ATTATAAAT
1 A-TATAAAT
7169628 ACAAACATAT
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
40 6 0.09
41 39 0.57
42 20 0.29
44 4 0.06
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (41 bp):
ATATAAATTACATAAATTTATAATATTTTAAATAATAAAAA
Found at i:7169628 original size:16 final size:16
Alignment explanation
Indices: 7169559--7169628 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
7169549 AATTTTTTTC
* *
7169559 ATATATAAAATAATAA
1 ATATAAAAAATTATAA
7169575 ATATATAAAAATTAACATAA
1 ATATA-AAAAATT---ATAA
* * *
7169595 A-ATATAATATTTTAA
1 ATATAAAAAATTATAA
7169610 ATATAAAAAATTATAA
1 ATATAAAAAATTATAA
7169626 ATA
1 ATA
7169629 CAAACATATA
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
15 4 0.10
16 19 0.46
17 5 0.12
18 5 0.12
19 3 0.07
20 5 0.12
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAAAAAATTATAA
Found at i:7174679 original size:13 final size:13
Alignment explanation
Indices: 7174661--7174686 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7174651 CAATTTTTTG
7174661 TGTATCGATACAT
1 TGTATCGATACAT
7174674 TGTATCGATACAT
1 TGTATCGATACAT
7174687 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7177240 original size:13 final size:13
Alignment explanation
Indices: 7177222--7177260 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
7177212 ATAATCACCC
*
7177222 TGTATCGATACAG
1 TGTATCGATACAA
7177235 TGTATCGATACAA
1 TGTATCGATACAA
7177248 TGTATCGATACAA
1 TGTATCGATACAA
7177261 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7177271 original size:20 final size:20
Alignment explanation
Indices: 7177246--7177324 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
7177236 GTATCGATAC
7177246 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
7177266 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
7177291 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
7177311 CATGTATCGATACA
1 AATGTATCGATACA
7177325 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:7183439 original size:13 final size:13
Alignment explanation
Indices: 7183421--7183446 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7183411 CAATTTTTTG
7183421 TGTATCGATACAT
1 TGTATCGATACAT
7183434 TGTATCGATACAT
1 TGTATCGATACAT
7183447 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7184897 original size:13 final size:13
Alignment explanation
Indices: 7184879--7184906 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7184869 ACAAACAATA
7184879 AATGTATCGATAC
1 AATGTATCGATAC
7184892 AATGTATCGATAC
1 AATGTATCGATAC
7184905 AA
1 AA
7184907 AACTACCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:7184998 original size:20 final size:20
Alignment explanation
Indices: 7184953--7185009 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
7184943 CATTATTAAA
*
7184953 TGTATCGATACATGCTTATGAT
1 TGTATCGATACAT--TTATCAT
*
7184975 TGTATCGATACATTTCTCAT
1 TGTATCGATACATTTATCAT
7184995 TGTATCGATACATTT
1 TGTATCGATACATTT
7185010 TGGGTTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 20 0.61
22 13 0.39
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATTTATCAT
Found at i:7185795 original size:13 final size:13
Alignment explanation
Indices: 7185777--7185801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7185767 CATAAAGTGT
7185777 TGTATCGATACAA
1 TGTATCGATACAA
7185790 TGTATCGATACA
1 TGTATCGATACA
7185802 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7185799 original size:33 final size:33
Alignment explanation
Indices: 7185757--7185823 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7185747 TTCAACGATT
7185757 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
7185790 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
7185823 T
1 T
7185824 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Done.