Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold196
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7488280
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 125249 characters in sequence are not A, C, G, or T
File 45 of 47
Found at i:7185883 original size:13 final size:13
Alignment explanation
Indices: 7185865--7185889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7185855 ATTACTCAAA
7185865 TGTATCGATACAT
1 TGTATCGATACAT
7185878 TGTATCGATACA
1 TGTATCGATACA
7185890 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7192901 original size:13 final size:13
Alignment explanation
Indices: 7192885--7192919 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
7192875 AAAAAAAACA
*
7192885 AAAAAAAAGAGTT
1 AAAAAAAAGAGTC
*
7192898 AAAAAAAGGAGTC
1 AAAAAAAAGAGTC
7192911 AAAAAAAAG
1 AAAAAAAAG
7192920 TGCAAAGGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.71, C:0.03, G:0.17, T:0.09
Consensus pattern (13 bp):
AAAAAAAAGAGTC
Found at i:7193181 original size:10 final size:10
Alignment explanation
Indices: 7193156--7193216 Score: 63
Period size: 10 Copynumber: 6.1 Consensus size: 10
7193146 GTTCTTTTCC
7193156 AAAAAAAG-A
1 AAAAAAAGAA
* *
7193165 AACAAAACAA
1 AAAAAAAGAA
7193175 AAAAAAAGAA
1 AAAAAAAGAA
7193185 AAAAAAAGAA
1 AAAAAAAGAA
7193195 CAAACAAAA-AA
1 -AAA-AAAAGAA
*
7193206 AAAAGAAGAA
1 AAAAAAAGAA
7193216 A
1 A
7193217 GGAAAAACCC
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
9 9 0.21
10 25 0.58
11 5 0.12
12 4 0.09
ACGTcount: A:0.85, C:0.07, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:7193222 original size:17 final size:17
Alignment explanation
Indices: 7193160--7193223 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
7193150 TTTTCCAAAA
* *
7193160 AAAGAAACAAAACAAAAAA
1 AAAGAAA-AAAA-AAGAAC
7193179 AAAGAAAAAAAAAGAAC
1 AAAGAAAAAAAAAGAAC
* *
7193196 AAACAAAAAAAAAAGAAG
1 AAA-GAAAAAAAAAGAAC
*
7193214 AAAGGAAAAA
1 AAAGAAAAAA
7193224 CCCCTTTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
17 12 0.32
18 19 0.50
19 7 0.18
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAAAAGAAC
Found at i:7193222 original size:18 final size:18
Alignment explanation
Indices: 7193182--7193223 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7193172 CAAAAAAAAA
7193182 GAAAAAAAAAGAACAAAC
1 GAAAAAAAAAGAACAAAC
* * *
7193200 AAAAAAAAAAGAAGAAAG
1 GAAAAAAAAAGAACAAAC
7193218 GAAAAA
1 GAAAAA
7193224 CCCCTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
GAAAAAAAAAGAACAAAC
Found at i:7194262 original size:23 final size:23
Alignment explanation
Indices: 7194232--7194277 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7194222 TTCCTTCTTT
7194232 TCAAAGTCCACGACTCAGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
* *
7194255 TCAAAGTCCATGACTCTGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
7194278 CCTCTTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (23 bp):
TCAAAGTCCACGACTCAGTGGCA
Found at i:7194329 original size:89 final size:91
Alignment explanation
Indices: 7194175--7194343 Score: 236
Period size: 89 Copynumber: 1.9 Consensus size: 91
7194165 AAAGCCCACA
* * * * *
7194175 ACTCTGTGGCATCTTTTTCCTTTAAAGCCCACGACTCAGTGGCATCTTTCCTTCTTTTCAAAGTC
1 ACTCTGTGGCACCTCTTTCCATCAAAGCCCACGACTCAGTGGCACCTTT-CTTCTTTTCAAAGTC
7194240 CACGACTCAGTGGCATCAAAGTCCATG
65 CACGACTCAGTGGCATCAAAGTCCATG
*
7194267 ACTCTGTGGCACCTCTTT-CATCAAAGTCCACGACTCCA-TGGCACCTTT-TTCTTTTCAAAGTC
1 ACTCTGTGGCACCTCTTTCCATCAAAGCCCACGACT-CAGTGGCACCTTTCTTCTTTTCAAAGTC
*
7194329 CACGACTCCGTGGCA
65 CACGACTCAGTGGCA
7194344 CCTTCTTTTC
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
89 28 0.41
91 23 0.33
92 18 0.26
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.31
Consensus pattern (91 bp):
ACTCTGTGGCACCTCTTTCCATCAAAGCCCACGACTCAGTGGCACCTTTCTTCTTTTCAAAGTCC
ACGACTCAGTGGCATCAAAGTCCATG
Found at i:7194353 original size:31 final size:31
Alignment explanation
Indices: 7194255--7195562 Score: 881
Period size: 31 Copynumber: 41.1 Consensus size: 31
7194245 CTCAGTGGCA
* *
7194255 TCAAAGTCCATGACTCTGTGGCACC-TCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
*
7194285 CATCAAAGTCCACGACTCCATGGCACCTTTTTCTTT
1 --TCAAAGTCCACGACTCCGTGGCACC---TTCTTT
7194321 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* * *
7194352 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TCAAAGTCCACGACTCCGTGGCAC-CTTCTT--T
* *
7194386 TCTAAGTCCACAACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* *
7194417 TCAAAGCCCACAACTCCGTGGCACTCTT-TTT
1 TCAAAGTCCACGACTCCGTGGCAC-CTTCTTT
7194448 CATCAAAGTCCACGACTCCGTGGCACCTTTTTCTTT
1 --TCAAAGTCCACGACTCCGTGGCACC---TTCTTT
*
7194484 TCAAAGTCCACGACTCAGTGGCA-------T
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
*
7194508 T-AAAGTCCACGACTCCGTGGCACCTTTTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
7194539 TCTTAAAGTCCACGACTCCGTGGCACCTTCTTT
1 TC--AAAGTCCACGACTCCGTGGCACCTTCTTT
* *
7194572 TCAAAGCCCACAACTCCGTGGCACTCTT-TTT
1 TCAAAGTCCACGACTCCGTGGCAC-CTTCTTT
* *
7194603 CATCAAAATCCATGACTCCGTGGCACCTTTTTCTTT
1 --TCAAAGTCCACGACTCCGTGGCACC---TTCTTT
* **
7194639 TCAAAGTCCATGACTTAGTGGCA--------
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* *
7194662 TCAAAGTCCATGACTCCGTGGCACCTTTTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
*
7194694 TCTTAAAGTCCACAACTCCGTGGCACCTTCTTT
1 TC--AAAGTCCACGACTCCGTGGCACCTTCTTT
* *
7194727 TCAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
* **
7194759 TTAAAGTCCACGACTTAGTGGCA--TT-TTGT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
* *
7194788 CTCAAAGTCCACAACTCAGTGGCA--TTCTTTCT
1 -TCAAAGTCCACGACTCCGTGGCACCTTC-TT-T
* *
7194820 TCAAAGCCCACAACTCCGTGGCACTCTTTTACTTTT
1 TCAAAGTCCACGACTCCGTGGCAC-C--TT-C-TTT
* * * * *
7194856 TTAAAGTCTACAACCCCGTGGCACCTTGTTCCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT--T
** *
7194889 TTTAAGTCCACGACTCCGTGGCACCTTCCTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
7194920 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* *
7194951 TCAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
* * **
7194983 TTAAAGTCTACGACTTAGTGGCA--TT-TTGT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
*
7195012 CTCAAAGTCCACGACTCAGTGGCA--TTCTTTCT
1 -TCAAAGTCCACGACTCCGTGGCACCTTC-TT-T
* * *
7195044 TTAAAGCCCACAACTCCGTGGCACTCTTTTACCCTTT
1 TCAAAGTCCACGACTCCGTGGCAC-C--TT---CTTT
* * *
7195081 T-AAAGTCCACAACCCCGTGGCACCTTGTTCCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT--T
** *
7195113 TTTAAGTCCACGACTCCGTGGCACCTTCCTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
7195144 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* *
7195175 TCAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT-T
* ** ** * *
7195207 TTAAAGTCCACGACTTAGTGGCATTTTGTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
*
7195238 T-AAAGTCCACGACTCAGTGGCA--TTCTTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTTC-TT-T
* * *
7195268 TCAAAGCCCACAACTCTGTGGCACTCTTTTACCCTTT
1 TCAAAGTCCACGACTCCGTGGCAC-C--TT---CTTT
* * *
7195305 T-AAAGTCCACAACCCCGTGGCACCTTGTTTCT
1 TCAAAGTCCACGACTCCGTGGCACCTT-CTT-T
** *
7195337 TTTAAGTCCACGACTCCGTGGCACCTTCCTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
*
7195368 TCAAAGTCCACGACTCTGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* * *
7195399 TTAAA-TCCCACAATTCCGTGGCACTCTTTTACCCTTT
1 TCAAAGT-CCACGACTCCGTGGCAC-C--TT---CTTT
* * *
7195436 T-AAAGTCCACAACCCCGTGGCACCTTGTTCCT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTT--T
** * * *
7195468 TTTAAGTCCACGACTCTGTGGCACATTCCTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
** *
7195499 TCAAAGTCTGCGACTCCATGGCACCTTCTTT
1 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
* * *
7195530 TCAAAGCCCACAACTCCGTGACACTCTT-TTT
1 TCAAAGTCCACGACTCCGTGGCAC-CTTCTTT
7195561 TC
1 TC
7195563 CTTTCTAAAG
Statistics
Matches: 1035, Mismatches: 145, Indels: 193
0.75 0.11 0.14
Matches are distributed among these distances:
23 41 0.04
24 2 0.00
28 2 0.00
29 7 0.01
30 75 0.07
31 377 0.36
32 113 0.11
33 152 0.15
34 143 0.14
35 8 0.01
36 95 0.09
37 14 0.01
38 4 0.00
39 2 0.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (31 bp):
TCAAAGTCCACGACTCCGTGGCACCTTCTTT
Found at i:7194516 original size:23 final size:23
Alignment explanation
Indices: 7194486--7194529 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
7194476 TTTTCTTTTC
7194486 AAAGTCCACGACTCAGTGGCATT
1 AAAGTCCACGACTCAGTGGCATT
*
7194509 AAAGTCCACGACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
7194530 CCTTTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.18
Consensus pattern (23 bp):
AAAGTCCACGACTCAGTGGCATT
Found at i:7194516 original size:57 final size:57
Alignment explanation
Indices: 7194452--7194563 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
7194442 CTTTTTCATC
7194452 AAAGTCCACGACTCCGTGGCACCTTTTTCTT-TTCAAAGTCCACGACTCAGTGGCATT
1 AAAGTCCACGACTCCGTGGCACCTTTTTCTTCTT-AAAGTCCACGACTCAGTGGCATT
*
7194509 AAAGTCCACGACTCCGTGGCACCTTTTTCTTCTTAAAGTCCACGACTCCGTGGCA
1 AAAGTCCACGACTCCGTGGCACCTTTTTCTTCTTAAAGTCCACGACTCAGTGGCA
7194564 CCTTCTTTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
57 51 0.96
58 2 0.04
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (57 bp):
AAAGTCCACGACTCCGTGGCACCTTTTTCTTCTTAAAGTCCACGACTCAGTGGCATT
Found at i:7194682 original size:23 final size:23
Alignment explanation
Indices: 7194639--7194684 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7194629 CTTTTTCTTT
*
7194639 TCAAAGTCCATGACTTAGTGGCA
1 TCAAAGTCCATGACTCAGTGGCA
*
7194662 TCAAAGTCCATGACTCCGTGGCA
1 TCAAAGTCCATGACTCAGTGGCA
7194685 CCTTTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (23 bp):
TCAAAGTCCATGACTCAGTGGCA
Found at i:7194717 original size:57 final size:57
Alignment explanation
Indices: 7194603--7194718 Score: 171
Period size: 57 Copynumber: 2.0 Consensus size: 57
7194593 CACTCTTTTT
** *
7194603 CATCAAAATCCATGACTCCGTGGCACCTTTTTCTTTTCAAAGTCCATGACTTAGTGG
1 CATCAAAATCCATGACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACAACTCAGTGG
* *
7194660 CATCAAAGTCCATGACTCCGTGGCACCTTTTTCTTCTT-AAAGTCCACAACTCCGTGG
1 CATCAAAATCCATGACTCCGTGGCACCTTTTTCTT-TTCAAAGTCCACAACTCAGTGG
7194717 CA
1 CA
7194719 CCTTCTTTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
57 51 0.96
58 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (57 bp):
CATCAAAATCCATGACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACAACTCAGTGG
Found at i:7194945 original size:224 final size:224
Alignment explanation
Indices: 7194665--7195422 Score: 1336
Period size: 224 Copynumber: 3.4 Consensus size: 224
7194655 AGTGGCATCA
* * * *
7194665 AAGTCCATGACTCCGTGGCACCTTTTTCTTCTTAAAGTCCACAACTCCGTGGCACCTTCTTTTCA
1 AAGTCCACGACTCCGTGGCACC--TTCCTT-TCAAAGTCCACGACTCCGTGGCACCTTCTTTTCA
7194730 AAGCCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCCACGACTTAGTGGCATTTTGTCTCAAAG
63 AAGCCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCCACGACTTAGTGGCATTTTGTCTCAAAG
* **
7194795 TCCACAACTCAGTGGCATTCTTTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTACTTTTTTAA
128 TCCACGACTCAGTGGCATTCTTTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCCTTTTAA
*
7194860 AGTCTACAACCCCGTGGCACCTTGTTCCTTTT
193 AGTCCACAACCCCGTGGCACCTTGTTCCTTTT
7194892 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
1 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
*
7194957 CCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCTACGACTTAGTGGCATTTTGTCTCAAAGTCC
66 CCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCCACGACTTAGTGGCATTTTGTCTCAAAGTCC
*
7195022 ACGACTCAGTGGCATTCTTTCTTTAAAGCCCACAACTCCGTGGCACTCTTTTACCCTTTTAAAGT
131 ACGACTCAGTGGCATTCTTTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCCTTTTAAAGT
7195087 CCACAACCCCGTGGCACCTTGTTCCTTTT
196 CCACAACCCCGTGGCACCTTGTTCCTTTT
7195116 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
1 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
*
7195181 CCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCCACGACTTAGTGGCATTTTGTCTTAAAGTCC
66 CCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCCACGACTTAGTGGCATTTTGTCTCAAAGTCC
*
7195246 ACGACTCAGTGGCATTCTTTCTTCAAAGCCCACAACTCTGTGGCACTCTTTTACCCTTTTAAAGT
131 ACGACTCAGTGGCATTCTTTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCCTTTTAAAGT
*
7195311 CCACAACCCCGTGGCACCTTGTTTCTTTT
196 CCACAACCCCGTGGCACCTTGTTCCTTTT
* * *
7195340 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCTGTGGCACCTTCTTTTTAAAT
1 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
*
7195405 CCCACAATTCCGTGGCAC
66 CCCACAACTCCGTGGCAC
7195423 TCTTTTACCC
Statistics
Matches: 512, Mismatches: 19, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
224 486 0.95
225 5 0.01
227 21 0.04
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (224 bp):
AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
CCCACAACTCCGTGGCACCTTCTTCTTTAAAGTCCACGACTTAGTGGCATTTTGTCTCAAAGTCC
ACGACTCAGTGGCATTCTTTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCCTTTTAAAGT
CCACAACCCCGTGGCACCTTGTTCCTTTT
Found at i:7195505 original size:131 final size:130
Alignment explanation
Indices: 7195043--7195578 Score: 572
Period size: 131 Copynumber: 4.1 Consensus size: 130
7195033 GCATTCTTTC
* * *
7195043 TTTAAAGCCCACAACTCCGTGGCACTCTT-TTACCCTTTTAAAGTCCACAACCCCGTGGCACCTT
1 TTTAAAGCCCACAACCCCGTGGCAC-CTTGTT--CCTTTT-AAGTCCACGACTCCGTGGCA-C--
* * * * *
7195107 GTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCAC-C--
59 ATTCCTTTAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTT
7195169 TT---CT
124 TTACCCT
* * * ** * **
7195173 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTAAAGTCCACGACTTAGTGGCA-TTTTGT
1 TTT-AAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCT
* *
7195236 CTTAAAGTCCACGACTCAGTGGCA--TTCTTTCTTCAAAGCCCACAACTCTGTGGCACTCTTTTA
65 -TTAAAGTCCACGACTCCGTGGCACCTTC-TT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTA
7195299 CCCT
127 CCCT
* * *
7195303 TTTAAAGTCCACAACCCCGTGGCACCTTGTTTCTTTTAAGTCCACGACTCCGTGGCACCTTCCTT
1 TTTAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTT
* * * *
7195368 TCAAAGTCCACGACTCTGTGGCACCTTCTTTTTAAATCCCACAATTCCGTGGCACTCTTTTACCC
66 T-AAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCC
7195433 T
130 T
* *
7195434 TTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCTGTGGCACATTCCTT
1 TTTAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTT
** * * **
7195499 TCAAAGTCTGCGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGACACTCTTTTTTCC
66 T-AAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCC
7195564 T
130 T
7195565 TTCTAAAGCCCACA
1 TT-TAAAGCCCACA
7195579 CAAGTCGGTG
Statistics
Matches: 347, Mismatches: 42, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
122 3 0.01
123 4 0.01
124 43 0.12
125 1 0.00
127 18 0.05
128 4 0.01
129 25 0.07
130 35 0.10
131 199 0.57
132 12 0.03
133 3 0.01
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (130 bp):
TTTAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTT
TAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTACCCT
Found at i:7195610 original size:32 final size:31
Alignment explanation
Indices: 7195565--7195670 Score: 187
Period size: 32 Copynumber: 3.4 Consensus size: 31
7195555 CTTTTTTCCT
7195565 TTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCC
7195596 TTCTCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTCT-AAAGCCCACACAAGTCGGTGGCAACCC
7195628 TCTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 T-TCTAAAGCCCACACAAGTCGGTGGCAACCC
7195660 TTCT-AAGCCCA
1 TTCTAAAGCCCA
7195671 ATATAGCTGG
Statistics
Matches: 73, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
30 7 0.10
31 7 0.10
32 56 0.77
33 3 0.04
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (31 bp):
TTCTAAAGCCCACACAAGTCGGTGGCAACCC
Found at i:7195721 original size:49 final size:47
Alignment explanation
Indices: 7195659--7196026 Score: 373
Period size: 49 Copynumber: 7.9 Consensus size: 47
7195649 GGTGGCAACC
* *
7195659 CTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 CTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
7195706 CTTCGCTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C--
1 CTT--CTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * * *
7195752 CTT-TAAGTCCAATATCGTTGGCCTTAAATCAGCATATTGGCACCTT
1 CTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * *
7195798 CATCTTTAAGTCCAATGTAGCTGGCCTTCAATCAGCACATTGGCA-C--
1 C-T-TCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
7195844 CTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
1 CTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * *
7195890 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C--
1 C-T-TCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
7195936 CTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT
1 CTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT
* * *
7195984 CCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 -C-T-TCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
7196027 ACATCCTTTT
Statistics
Matches: 273, Mismatches: 25, Indels: 41
0.81 0.07 0.12
Matches are distributed among these distances:
43 106 0.39
44 5 0.02
45 2 0.01
46 7 0.03
47 5 0.02
48 5 0.02
49 108 0.40
50 1 0.00
51 1 0.00
52 33 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (47 bp):
CTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
Found at i:7195825 original size:92 final size:92
Alignment explanation
Indices: 7195658--7196035 Score: 594
Period size: 92 Copynumber: 4.1 Consensus size: 92
7195648 CGGTGGCAAC
* * **
7195658 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCGCTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
*
7195723 TCGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
7195751 CCTTTAAGTCCAATATCGTTGGCCTTAAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
7195816 AGCTGGCCTTCAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
7195843 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
7195908 CGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
7195935 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
*
7196000 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
7196030 TCCTTT
1 -CCTTT
7196036 TTCTCATCTT
Statistics
Matches: 264, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
92 211 0.80
93 4 0.02
94 2 0.01
95 42 0.16
96 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:7196014 original size:52 final size:55
Alignment explanation
Indices: 7195936--7196205 Score: 200
Period size: 49 Copynumber: 4.9 Consensus size: 55
7195926 ACATTGGCAC
* *
7195936 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
7195988 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * ** *
7196043 CTTTAAGCCCAATATCGTTGGCCGTGAATCAATATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
7196108 AT
54 AT
* * * *
7196110 CTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCA-CC----T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
7196159 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTT
7196206 ATCTTTAAGT
Statistics
Matches: 177, Mismatches: 23, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
49 47 0.27
51 1 0.01
52 38 0.21
53 2 0.01
54 5 0.03
55 32 0.18
56 1 0.01
57 1 0.01
58 1 0.01
59 1 0.01
60 1 0.01
61 4 0.02
62 1 0.01
63 3 0.02
64 2 0.01
66 3 0.02
67 34 0.19
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:7196071 original size:55 final size:52
Alignment explanation
Indices: 7195936--7196073 Score: 177
Period size: 52 Copynumber: 2.6 Consensus size: 52
7195926 ACATTGGCAC
* *
7195936 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
7195988 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAT
* * * *
7196043 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
7196074 ATATATTGGC
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 38 0.52
53 2 0.03
54 5 0.07
55 28 0.38
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:7196176 original size:49 final size:49
Alignment explanation
Indices: 7196104--7196226 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
7196094 CTTTTCTCAT
7196104 CTTCATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCAC
1 CTTCATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCAC
*
7196153 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTCATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCAC
* *
7196202 CTTTATCTTTAAGTCCAATATCGCT
1 CTTCATCTTTAAGTCCAATGTCGCT
7196227 AGCCGCATAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (49 bp):
CTTCATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCAC
Found at i:7196198 original size:116 final size:119
Alignment explanation
Indices: 7195985--7196208 Score: 292
Period size: 116 Copynumber: 1.9 Consensus size: 119
7195975 GCACCTTTTC
* *
7195985 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
1 CATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGACATCC---TTCTCATCTTTAAG
* * * *
7196050 CCCAATATCGTTGGCCGTGAATCAATATATTGGCATCTTTATCACTTTTCTCATCTT
63 CCCAATATCGCTGGCCGTGAATCAACACATTGGCACCTTTATCACTTTTCTCATCTT
* * *
7196107 CATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCA-CC-T-TCATCTTTAAGTCC
1 CATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGACATCCTTCTCATCTTTAAGCCC
* * *
7196169 AATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
66 AATATCGCTGGCCGTGAATCAACACATTGGCACCTTTATC
7196209 TTTAAGTCCA
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
116 46 0.51
117 1 0.01
121 2 0.02
122 41 0.46
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.36
Consensus pattern (119 bp):
CATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGACATCCTTCTCATCTTTAAGCCC
AATATCGCTGGCCGTGAATCAACACATTGGCACCTTTATCACTTTTCTCATCTT
Found at i:7207913 original size:16 final size:16
Alignment explanation
Indices: 7207872--7207921 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
7207862 AAAATTAATG
7207872 AAAATAA-ATA-TTTA
1 AAAATAATATATTTTA
* *
7207886 CAAGTAATTATATTTTA
1 AAAATAA-TATATTTTA
7207903 AAAATAATATATTTTA
1 AAAATAATATATTTTA
7207919 AAA
1 AAA
7207922 TAACTTTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 5 0.17
16 15 0.52
17 9 0.31
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (16 bp):
AAAATAATATATTTTA
Found at i:7210980 original size:24 final size:24
Alignment explanation
Indices: 7210953--7211008 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
7210943 AATTTAAAAA
**
7210953 TTAAATTTGATGGGTAAAATAATT
1 TTAAATTTGATGAATAAAATAATT
*
7210977 TTAAATTTGATGAATATAATAATT
1 TTAAATTTGATGAATAAAATAATT
7211001 TTAAATTT
1 TTAAATTT
7211009 TTAGTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (24 bp):
TTAAATTTGATGAATAAAATAATT
Found at i:7211776 original size:30 final size:30
Alignment explanation
Indices: 7211742--7211815 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
7211732 AATTAAGAGT
* *
7211742 TTATTTATATATAAATTAAAGGTTAAAAAC
1 TTATTTAGATATAAATTAAAGGTTAAAAAA
* *
7211772 TTATTGGAGA-ATAAGTTAAAGGTTAAAAAA
1 TTATT-TAGATATAAATTAAAGGTTAAAAAA
7211802 TTATTTAGATATAA
1 TTATTTAGATATAA
7211816 TGATTTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 3 0.08
30 32 0.86
31 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.12, T:0.38
Consensus pattern (30 bp):
TTATTTAGATATAAATTAAAGGTTAAAAAA
Found at i:7212764 original size:13 final size:12
Alignment explanation
Indices: 7212748--7212800 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
7212738 TGACCGCAAC
*
7212748 TTTTAAAGTCAT
1 TTTTTAAGTCAT
*
7212760 TTTTTAA-CCAAT
1 TTTTTAAGTC-AT
7212772 TTTTTAAGTCAT
1 TTTTTAAGTCAT
**
7212784 TTTTTAACCCAT
1 TTTTTAAGTCAT
7212796 TTTTT
1 TTTTT
7212801 TAACACAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
11 1 0.03
12 32 0.94
13 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (12 bp):
TTTTTAAGTCAT
Found at i:7212800 original size:24 final size:24
Alignment explanation
Indices: 7212748--7212800 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
7212738 TGACCGCAAC
*
7212748 TTTTAAAGTCATTTTTTAACCAAT
1 TTTTTAAGTCATTTTTTAACCAAT
*
7212772 TTTTTAAGTCATTTTTTAACCCAT
1 TTTTTAAGTCATTTTTTAACCAAT
7212796 TTTTT
1 TTTTT
7212801 TAACACAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTTAAGTCATTTTTTAACCAAT
Found at i:7212804 original size:13 final size:12
Alignment explanation
Indices: 7212757--7212800 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
7212747 CTTTTAAAGT
7212757 CATTTTTTAACC
1 CATTTTTTAACC
* **
7212769 AATTTTTTAAGT
1 CATTTTTTAACC
7212781 CATTTTTTAACC
1 CATTTTTTAACC
7212793 CATTTTTT
1 CATTTTTT
7212801 TAACACAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.02, T:0.57
Consensus pattern (12 bp):
CATTTTTTAACC
Found at i:7219162 original size:21 final size:21
Alignment explanation
Indices: 7219114--7219163 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7219104 TAAATTTTTT
*
7219114 TATATAAAAAATTATAATTTAA
1 TATA-AAAAAATTATAATTAAA
*
7219136 TATAAAAAAATTATTA-TAAA
1 TATAAAAAAATTATAATTAAA
*
7219156 TATTAAAA
1 TATAAAAA
7219164 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.40
21 11 0.44
22 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TATAAAAAAATTATAATTAAA
Found at i:7219169 original size:14 final size:15
Alignment explanation
Indices: 7219148--7219189 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
7219138 TAAAAAAATT
7219148 ATTATAAATATTAAA
1 ATTATAAATATTAAA
7219163 ATT-TAAA-ATTTAAA
1 ATTATAAATA-TTAAA
*
7219177 ATTATTAATATTA
1 ATTATAAATATTA
7219190 TTTTATAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
13 1 0.04
14 12 0.52
15 9 0.39
16 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAATATTAAA
Found at i:7222815 original size:81 final size:80
Alignment explanation
Indices: 7222680--7222868 Score: 249
Period size: 81 Copynumber: 2.4 Consensus size: 80
7222670 CCCCCGATAA
* * *
7222680 TGAAAATTTTGATA-TTTTGGAAGTAAAAATGGGTTGGAGTATCCCATCAGAAATGATGGGATTG
1 TGAAAAATTCGATATTTTTGGAAGTAAAAATGGGTTGGAGTATCCCATCAGAAATGACGGGATTG
7222744 GACTATCCCCAATGG
66 GACTATCCCCAATGG
* * * * *
7222759 TGAAAAATTCGATATTTTTTGAAGTAAAACTGGGGTTGGAGTATTCCCTTGA-AAATGACGGGGT
1 TGAAAAATTCGATATTTTTGGAAGTAAAAAT-GGGTTGGAGTA-TCCCATCAGAAATGACGGGAT
*
7222823 TGGAGTATCCCCAATGG
64 TGGACTATCCCCAATGG
*
7222840 TGAAAAATTCGATA-TTTAGGAAGTAAAAA
1 TGAAAAATTCGATATTTTTGGAAGTAAAAA
7222869 CATGGTTACG
Statistics
Matches: 95, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 12 0.13
80 26 0.27
81 51 0.54
82 6 0.06
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (80 bp):
TGAAAAATTCGATATTTTTGGAAGTAAAAATGGGTTGGAGTATCCCATCAGAAATGACGGGATTG
GACTATCCCCAATGG
Found at i:7222869 original size:81 final size:80
Alignment explanation
Indices: 7222658--7223167 Score: 403
Period size: 79 Copynumber: 6.4 Consensus size: 80
7222648 CTCAGAATAC
* * ** * * * *
7222658 GGGGTTGGAGTACCCCCGATAATGAAAATTTTGATATTTTGGAAGTAAAAA-TGGGTTGGAGTA-
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATATTTTGGAAATAAAAACGGGGTTGGAGTAT
* *
7222721 TCCCATCAGAAATGAT
66 TCCCTTGA-AAATGAT
* * * *
7222737 GGGATTGGACTATCCCCAATGGTGAAAAATTCGATATTTTTTGAAGT-AAAACTGGGGTTGGAGT
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATA-TTTTGGAAATAAAAAC-GGGGTTGGAGT
*
7222801 ATTCCCTTGAAAATGAC
64 ATTCCCTTGAAAATGAT
* * **
7222818 GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATATTTAGGAAGTAAAAACATGGTT--ACGT-
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATATTTTGGAAATAAAAACGGGGTTGGA-GTA
**
7222880 TATCTCC-T-AAAAAAAT
65 T-TC-CCTTGAAAATGAT
* * * * * * * *
7222896 GGAGTTGGAGAATCCCCAATGGTGACAAATT-AATATTTCGTAAATAAAAACAGGGTTAGAGTAT
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATATTTTGGAAATAAAAACGGGGTTGGAGTAT
*
7222960 TCCCTCGAAAATGAT
66 TCCCTTGAAAATGAT
* * * * *
7222975 AGGGTTAGAGTATCCCTTTCCCCAATGGT-AAAAAATCGATATTTTGGAAATAAAAACGAGGTTA
1 GGGGTTGGAGTA------TCCCCAATGGTGAAAAATTCGATATTTTGGAAATAAAAACGGGGTTG
* * * *
7223039 GAGTTTTTCTTTAAAAATGAT
60 GAGTATTCCCTTGAAAATGAT
* * * * *
7223060 GGGGTTAGAGTATCCCCAATGGTGAAAAATT-AATATTTTGAAAATAAAAACGGAGTTGGACTAT
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATATTTTGGAAATAAAAACGGGGTTGGAGTAT
* *
7223124 CCCCTTGAAAATAAT
66 TCCCTTGAAAATGAT
* *
7223139 GGGGTTGAAGTATCCCCAATGGTAAAAAA
1 GGGGTTGGAGTATCCCCAATGGTGAAAAA
7223168 ATTGATAATT
Statistics
Matches: 344, Mismatches: 66, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
77 23 0.07
78 39 0.11
79 126 0.37
80 29 0.08
81 56 0.16
82 6 0.02
84 5 0.01
85 60 0.17
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (80 bp):
GGGGTTGGAGTATCCCCAATGGTGAAAAATTCGATATTTTGGAAATAAAAACGGGGTTGGAGTAT
TCCCTTGAAAATGAT
Found at i:7223056 original size:85 final size:85
Alignment explanation
Indices: 7222908--7223075 Score: 212
Period size: 85 Copynumber: 2.0 Consensus size: 85
7222898 AGTTGGAGAA
* * * * *
7222908 TCCCCAATGGTGACAAATTAATATTTCGTAAATAAAAACAGGGTTAGAGTATTCCCTCGAAAATG
1 TCCCCAATGGTAAAAAATCAATATTTCGGAAATAAAAACAGGGTTAGAGTATTCCCTCAAAAATG
7222973 ATAGGGTTAGAGTATCCCTT
66 ATAGGGTTAGAGTATCCCTT
* * * * * *
7222993 TCCCCAATGGTAAAAAATCGATATTTTGGAAATAAAAAC-GAGGTTAGAGTTTTTCTTTAAAAAT
1 TCCCCAATGGTAAAAAATCAATATTTCGGAAATAAAAACAG-GGTTAGAGTATTCCCTCAAAAAT
*
7223057 GATGGGGTTAGAGTATCCC
65 GATAGGGTTAGAGTATCCC
7223076 CAATGGTGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
84 1 0.01
85 69 0.99
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (85 bp):
TCCCCAATGGTAAAAAATCAATATTTCGGAAATAAAAACAGGGTTAGAGTATTCCCTCAAAAATG
ATAGGGTTAGAGTATCCCTT
Found at i:7223109 original size:164 final size:159
Alignment explanation
Indices: 7222730--7223154 Score: 427
Period size: 164 Copynumber: 2.6 Consensus size: 159
7222720 ATCCCATCAG
* * * *
7222730 AAATGATGGGATTGGACTATCCCCAATGGTGAAAAATTCGATATTTTTTGAAGT-AAAACTGGGG
1 AAATGATGGGGTTGGAGTATCCCCAATGGTGAAAAATT--A-ATATTTTGAAATAAAAAC--GGG
* *
7222794 TTGGAGTATTCCCTTGAAAATGACGGGGTTGGAGTA----TCCCCAATGGTGAAAAATTCGATAT
61 TTGGAGTATTCCCTTGAAAATGATGGGGTT-GAGTATCCCTCCCCAATGGTGAAAAAATCGATAT
* *
7222855 TTAGGAAGTAAAAACATGGTTACGTTATCTCCTAA
125 TTAGGAAATAAAAACATGGTTAAGTTATCTCCTAA
* * * * * *
7222890 AAA-AATGGAGTTGGAGAATCCCCAATGGTGACAAATTAATATTTCGTAAATAAAAACAGGGTTA
1 AAATGATGGGGTTGGAGTATCCCCAATGGTGAAAAATTAATATTTTG-AAATAAAAAC-GGGTTG
* *
7222954 GAGTATTCCCTCGAAAATGATAGGGTTAGAGTATCCCTTTCCCCAATGGT-AAAAAATCGATATT
64 GAGTATTCCCTTGAAAATGATGGGGTT-GAGTATCCC--TCCCCAATGGTGAAAAAATCGATATT
* * *
7223018 TTGGAAATAAAAACGA-GGTTAGAGTT-TTTCTTTAA
126 TAGGAAATAAAAAC-ATGGTTA-AGTTATCTC-CTAA
*
7223053 AAATGATGGGGTTAGAGTATCCCCAATGGTGAAAAATTAATATTTTGAAAATAAAAACGGAGTTG
1 AAATGATGGGGTTGGAGTATCCCCAATGGTGAAAAATTAATATTTTG-AAATAAAAACGG-GTTG
* * *
7223118 GACTATCCCCTTGAAAATAATGGGGTTGAAGTATCCC
64 GAGTATTCCCTTGAAAATGATGGGGTTG-AGTATCCC
7223155 CAATGGTAAA
Statistics
Matches: 217, Mismatches: 34, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
156 6 0.03
157 38 0.18
158 5 0.02
159 28 0.13
160 3 0.01
162 33 0.15
163 24 0.11
164 80 0.37
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (159 bp):
AAATGATGGGGTTGGAGTATCCCCAATGGTGAAAAATTAATATTTTGAAATAAAAACGGGTTGGA
GTATTCCCTTGAAAATGATGGGGTTGAGTATCCCTCCCCAATGGTGAAAAAATCGATATTTAGGA
AATAAAAACATGGTTAAGTTATCTCCTAA
Found at i:7225798 original size:20 final size:20
Alignment explanation
Indices: 7225756--7225830 Score: 105
Period size: 20 Copynumber: 3.7 Consensus size: 20
7225746 AGAGTGGTTT
**
7225756 TGTATCAATACATTTCAGATA
1 TGTATCAATACA-TTCACTTA
*
7225777 TGTATCGATACATTCACTTA
1 TGTATCAATACATTCACTTA
*
7225797 TGTATCGATACATTCACTTA
1 TGTATCAATACATTCACTTA
7225817 TGTATCAATACATT
1 TGTATCAATACATT
7225831 TATTATTTGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
20 39 0.78
21 11 0.22
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.40
Consensus pattern (20 bp):
TGTATCAATACATTCACTTA
Found at i:7226160 original size:16 final size:16
Alignment explanation
Indices: 7226139--7226201 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 16
7226129 TAAATTTAAT
7226139 TATTAAAATAAATAAA
1 TATTAAAATAAATAAA
7226155 TATTAAAATAAATAATAA
1 TATTAAAATAAAT-A-AA
7226173 TATTTTAATAATATAATAAA
1 TA--TTAA-AATA-AATAAA
*
7226193 TATGAAAAT
1 TATTAAAAT
7226202 GAGATTTCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
16 13 0.32
17 4 0.10
18 7 0.17
20 8 0.20
21 5 0.12
22 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
TATTAAAATAAATAAA
Found at i:7226194 original size:23 final size:20
Alignment explanation
Indices: 7226144--7226194 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7226134 TTAATTATTA
7226144 AAATAAATAAATATTAAAAT
1 AAATAAATAAATATTAAAAT
*
7226164 AAAT-AATAATATTTTAATAAT
1 AAATAAATAA-ATATTAA-AAT
7226185 ATAATAAATA
1 A-AATAAATA
7226195 TGAAAATGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 10 0.38
21 4 0.15
22 3 0.12
23 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATAAATAAATATTAAAAT
Found at i:7227690 original size:20 final size:20
Alignment explanation
Indices: 7227662--7227738 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
7227652 TTTTACCCAG
*
7227662 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTATTCA
* *
7227682 ATATATCGATACATGTAAT-A
1 ATGTATCGATACAT-TATTCA
* *
7227702 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTATTCA
*
7227722 ATGTATTGATACATTAT
1 ATGTATCGATACATTAT
7227739 GTCTTTTTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.04
20 41 0.91
21 2 0.04
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTATTCA
Found at i:7236104 original size:55 final size:55
Alignment explanation
Indices: 7236038--7237330 Score: 791
Period size: 55 Copynumber: 22.7 Consensus size: 55
7236028 CATTTTCTTA
** * *
7236038 TAAAGTCCACAACTCTATAGCATCCTTTT-AAGTCCACAACTCCGTGGCATCCCTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCA-CCCTT
7236093 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCC-TT
* *
7236149 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCATCGTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTT
* * * * *
7236204 TTAAGTCCATAACTCTGTGGTACCCTTTT-AAGTCCATAACTCCGTGGCACCCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCC-TT
* * *
7236259 TAAAGTGCACAACTCCGTGGCATCGTTTT-AAGTCCACAACTCCGTGGCACCCTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTT
* * *
7236313 TAAAGTTCACAACTCCGTGACACCTTTTTAAAGTCCACAACTCCGTGGCACCCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCC-TT
* * * * * *
7236369 TAAAGTCCACAACTCCATGGCATCATTTTTAAGTCCACAACTTCGTGGTACCCTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTT
* * * *
7236424 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAATCCACAACTTCGTGGCATCGTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTT
* * * *
7236479 TTAAGTCCACAACTCCGTGGCA-TCTTTTAAAGTCCACAATTTCGTGGCACCCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCC-TT
* * * *
7236534 TAAAGTCCACAACTCCGTGGCACCCTTTT-AAGTTCACAACTTCGTGGCATTCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCA-CCCTT
* * * ** * * * * *
7236589 TTAAGCCCACAAGTTAGTGGCACCCATTTAAAGCCCACACAAGTCGGTGGCAACCTATT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAG-TC-CACAACTCCGTGGC-ACC-CTT
* * * * * * *
7236648 TCAAAGCCCACACAAGTCGGTGGCAACCCATTTGAAAGCCCACACAAGTCGGTGGCAACCCATT
1 T-AAAG-TC-CACAACTCCGTGGC-ACCC-TTTTAAAG-TC-CACAACTCCGTGGC-ACCC-TT
* * ** * * * *
7236712 TCAAAGCCCACAAATTAGTGGCACCCTTTCAAA-CCCACAAGTCAGTGGCACCCTTT
1 T-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCC-TT
* * * * * * * ** * *
7236768 TAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCAGAAGTCAATGGTACTCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCAC-CCTT
* * * * * ** *
7236824 TCAAAGCTCACACGAGTCGGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTT
1 T-AAAG-TC-CACAACTCCGTGGC-ACCCTTTT-AAAGTCCACAACTCCGTGGCACCCTT
* * * ** * * * * *
7236884 TCAAAGCCCACGAGTTGGTGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCATCCTTT
1 T-AAAGTCCACAACTCCGTGGC-ACCCTTTT-AAAGTCCACAACTCCGTGGCA-CCCTT
* * * * * *
7236943 TAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGTCGGTGGCAACCCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACA--ACTCCGTGGC-ACCC-TT
* * * * * * * * * *
7237002 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGT-TGTTGGCAACACTTT
1 T-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCG-TGGC-AC-CCTT
* * * * * * *
7237060 TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
1 T-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCC-TT
* * * * * * * *
7237117 TAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTT
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCAC-CCTT
* * * * * ** *
7237173 TCAAAGCCCACACGAGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTT
1 T-AAAGTCCACA--ACTCCGTGGC-ACCCTTTT-AAAGTCCACAACTCCGTGGCACCCTT
* * * * * * * ** *
7237233 TCAAAGCCCACGAGTCGGTGGCAACACTTTTCAAAGCCCACAAGTTAGTGGCATCCTTT
1 T-AAAGTCCACAACTCCGTGGC-ACCCTTTT-AAAGTCCACAACTCCGTGGCA-CCCTT
* * * * *
7237292 TAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACA
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACA
7237331 CGAGTCGATG
Statistics
Matches: 1061, Mismatches: 134, Indels: 85
0.83 0.10 0.07
Matches are distributed among these distances:
54 72 0.07
55 290 0.27
56 227 0.21
57 48 0.05
58 197 0.19
59 39 0.04
60 80 0.08
61 43 0.04
62 23 0.02
63 6 0.01
64 36 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTT
Found at i:7236263 original size:82 final size:83
Alignment explanation
Indices: 7236038--7237330 Score: 852
Period size: 82 Copynumber: 15.1 Consensus size: 83
7236028 CATTTTCTTA
** * *
7236038 TAAAGTCCACAACTCTATAGCATCCTTTTAAGTCCACAACTCCGTGGCATCCC-TTTAAAGTCCA
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAAGTCCA
7236102 CAACTCCGTGGCACCCTTT
65 CAACTCCGTGGCACCCTTT
7236121 TAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCA
1 TAAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCA
* *
7236186 CAACTCCGTGGCATCGTTT
65 CAACTCCGTGGCACCCTTT
* * * * *
7236205 T-AAGTCCATAACTCTGTGGTACCCTTTTAAGTCCATAACTCCGTGGCACCCTTTTAAAGTGCAC
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAC
* *
7236269 AACTCCGTGGCATCGTTT
66 AACTCCGTGGCACCCTTT
* * * *
7236287 T-AAGTCCACAACTCCGTGGCACCCTTTAAAGTTCACAACTCCGTGACACCTTTTTAAAGTCCAC
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAC
7236351 AACTCCGTGGCACCCTTT
66 AACTCCGTGGCACCCTTT
* ** * *
7236369 TAAAGTCCACAACTCCATGGCATCATTTTTAAGTCCACAACTTCGTGGTACCC-TTTAAAGTCCA
1 TAAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCA
7236433 CAACTCCGTGGCACCCTTT
65 CAACTCCGTGGCACCCTTT
* * * * *
7236452 TAAAATCCACAACTTCGTGGCATCGTTTTAAGTCCACAACTCCGTGGCA-TCTTTTAAAGTCCAC
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAC
* *
7236516 AATTTCGTGGCACCCTTT
66 AACTCCGTGGCACCCTTT
* * ** * *
7236534 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTTCACAACTTCGTGGCATTCTTTTTAAGCCCAC
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAC
* ** *
7236599 AAGTTAGTGGCACCCATT
66 AACTCCGTGGCACCCTTT
* * * * * * * *
7236617 TAAAGCCCACACAAGTCGGTGGCAACCTATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTG
1 TAAAG-TC-CACAACTCCGTGGCACCCT-TTT--AAG-TC-CACAACTCCGTGGC-ACCC-TTTT
* * *
7236682 AAAGCCCACACAAGTCGGTGGCAACCCATTT
57 AAAG-TC-CACAACTCCGTGGC-ACCC-TTT
* * * ** * ** * * *
7236713 CAAAGCCCACAAATTAGTGGCACCCTTTCAAACCCACAAGTCAGTGGCACCCTTTTAAAGCCCAC
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAC
* *
7236778 AAATCAGTGGCACCCTTT
66 AACTCCGTGGCACCCTTT
* * * * ** * * * * *
7236796 CAAAGCCCAGAAGTCAATGGTACTCTTTTCAAAGCTCACACGAGTCGGTGGCAACCCTTTTCAAA
1 TAAAGTCCACAACTCCGTGGCACCCTTTT--AAG-TC-CACAACTCCGTGGC-ACCCTTTT-AAA
* * ** *
7236861 GCCCACAAGTTAGTGGCATCCTTT
60 GTCCACAACTCCGTGGCACCCTTT
* * * * ** * * * * * *
7236885 CAAAGCCCACGAGTTGGTGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCC
1 TAAAGTCCACAACTCCGTGGC-ACCCTTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAAGTC
* *
7236950 CACAAATCAGTGGCACCCTTT
63 CACAACTCCGTGGCACCCTTT
* * * * * * * *
7236971 TAAAGCCCACACGAGTCGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAG
1 TAAAGTCCACA--ACTCCGTGGC-ACCCTTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAAG
* * * * *
7237036 CCCACGAGT-TGTTGGCAACACTTT
61 TCCACAACTCCG-TGGC-ACCCTTT
* * * * * * * *
7237060 TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCC
1 T-AAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCC
* *
7237125 ACAAATCAGTGGCACCCTTT
64 ACAACTCCGTGGCACCCTTT
* * * * * * * *
7237145 CAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACGAGTCAGTGGCAACCCTTTTCAAA
1 TAAAGTCCACAACTCCGTGGCACCCTTTT--AAGTCCACA--ACTCCGTGGC-ACCCTTTT-AAA
* * ** *
7237210 GCCCACAAGTTAGTGGCATCCTTT
60 GTCCACAACTCCGTGGCACCCTTT
* * * * * * * * ** * *
7237234 CAAAGCCCACGAGTCGGTGGCAACACTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAAGCC
1 TAAAGTCCACAACTCCGTGGC-ACCCTTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAAGTC
* *
7237299 CACAAATCAGTGGCACCCTTT
63 CACAACTCCGTGGCACCCTTT
* *
7237320 CAAAGCCCACA
1 TAAAGTCCACA
7237331 CGAGTCGATG
Statistics
Matches: 1030, Mismatches: 140, Indels: 77
0.83 0.11 0.06
Matches are distributed among these distances:
81 1 0.00
82 217 0.21
83 178 0.17
84 102 0.10
85 45 0.04
86 113 0.11
87 52 0.05
88 113 0.11
89 103 0.10
90 53 0.05
91 4 0.00
92 6 0.01
93 4 0.00
94 27 0.03
95 6 0.01
96 6 0.01
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (83 bp):
TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCAC
AACTCCGTGGCACCCTTT
Found at i:7236483 original size:248 final size:249
Alignment explanation
Indices: 7236038--7237330 Score: 808
Period size: 248 Copynumber: 5.0 Consensus size: 249
7236028 CATTTTCTTA
** * * * *
7236038 TAAAGTCCACAACTCTATAGCATCCTTTTAAGTCCACAACTCCGTGGCATCC-CTTTAAAGTCCA
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTTCACAACTCCGTGGCATCCTTTTTAAAGTCCA
* *
7236102 CAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGT
66 CAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCATTTTAAAGTCCACAACTCCGT
* * * * *
7236167 GGCACCCTTTTAAAGTCCACAACTCCGTGGCATCGTTTTAAGTCCATAACTCTGTGGTACCCTTT
131 GGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAATCCACAACTCTGTGGCACCCTTT
* * * *
7236232 TAAGTCCATAACTCCGTGGCACCCTTTTAAAGTGCACAACTCCGTGGCATCGTTT
196 TAAGTCCACAACTCCGTGGCA-CCTTTTAAAGTCCACAACTCCGTGGCACCCTTT
* *
7236287 T-AAGTCCACAACTCCGTGGCACCCTTTAAAGTTCACAACTCCGTGACA-CCTTTTTAAAGTCCA
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTTCACAACTCCGTGGCATCCTTTTTAAAGTCCA
* * *
7236350 CAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCATCATTTTTAAGTCCACAACTTCGT
66 CAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCATTTTAAAGTCCACAACTCCGT
* * *
7236415 GGTACCC-TTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAATCCACAACT-TCGTGGCATCGT
131 GGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAATCCACAACTCT-GTGGCACCCT
* * *
7236478 TTTAAGTCCACAACTCCGTGGCATCTTTTAAAGTCCACAATTTCGTGGCACCCTTT
194 TTTAAGTCCACAACTCCGTGGCACCTTTTAAAGTCCACAACTCCGTGGCACCCTTT
* * *
7236534 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTTCACAACTTCGTGGCATTCTTTTT-AAGCCCA
1 TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTTCACAACTCCGTGGCATCCTTTTTAAAGTCCA
* ** * * * ** * *
7236598 CAAGTTAGTGGCACCCATTTAAAGCCCACACAAGTCGGTGGCAACCTATTTCAAAGCCCACACAA
66 CAACTCCGTGGCACCCTTTTAAAG-TC-CACAACTCCATGGC-ACC-ATTTTAAAG-TC-CACAA
* * * * * * * * *
7236663 GTCGGTGGCAACCCATTTGAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAAT-
125 CTCCGTGGC-ACCC-TTTTAAAG-TC-CACAACTCCGTGGC-ACCC-TTTTAAA-TCCACAACTC
* ** * * * * *
7236727 TAGTGGCACCCTTTCAAACCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCACC
183 T-GTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTAAAGTCCACAACTCCGTGGCACC
7236792 CTTT
246 CTTT
* * * * ** * * * * * * *
7236796 CAAAGCCCAGAAGTCAATGGTACTCTTTTCAAAGCTCACACGAGTCGGTGGCAACCCTTTTCAAA
1 TAAAGTCCACAACTCCGTGGCACCCTTTT--AAGTTCACA--ACTCCGTGGC-ATCCTTTTTAAA
* * ** * * * * * *** * *
7236861 GCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAGTTGGTGGCAACACTTTTCAAAGCCCACA
61 GTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCA-TTTT-AAAGTCCACA
* * * * * * * * *
7236926 AGTCAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGTCGGT
124 ACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAA-TCCACA--ACTCTGT
* * * * * * * *
7236991 GGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGT-TGTTGGCAAC
186 GGC-ACCCTTTT--AAGTCCACAACTCCGTGGCA-CCTTTTAAAGTCCACAACTCCG-TGGC-AC
*
7237055 ACTTT
245 CCTTT
* * * * ** * * * *
7237060 TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTTAAAGCC
1 T-AAAGTCCACAACTCCGTGGCACCCTTT-TAAGTTCACAACTCCGTGGCATCCTTTTTAAAGTC
* * * * * *
7237124 CACAAATCAGTGGCACCCTTTCAAAGCCCACAAGT-CAGTGGCACTC-TTTTCAAAGCCCACACG
64 CACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCA-TGGCAC-CATTTT-AAAGTCCACA--
* * * * ** * * * * * *
7237187 AGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAGTCGGT
124 ACTCCGTGGC-ACCCTTTT-AAAGTCCACAACTCCGTGGCACCCTTTTAAA-TCCACAACTCTGT
* * * ** * * *
7237252 GGCAACACTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCC
186 GGC-ACCCTTTT--AAGTCCACAACTCCGTGGCA-CCTTTTAAAGTCCACAACTCCGTGGCACCC
7237317 TTT
247 TTT
* *
7237320 CAAAGCCCACA
1 TAAAGTCCACA
7237331 CGAGTCGATG
Statistics
Matches: 861, Mismatches: 138, Indels: 80
0.80 0.13 0.07
Matches are distributed among these distances:
247 60 0.07
248 226 0.26
249 8 0.01
250 11 0.01
251 2 0.00
252 7 0.01
253 1 0.00
254 10 0.01
255 4 0.00
257 6 0.01
258 14 0.02
259 41 0.05
260 79 0.09
261 118 0.14
262 74 0.09
263 75 0.09
264 36 0.04
265 30 0.03
266 23 0.03
267 8 0.01
268 28 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (249 bp):
TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTTCACAACTCCGTGGCATCCTTTTTAAAGTCCA
CAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCATTTTAAAGTCCACAACTCCGT
GGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAATCCACAACTCTGTGGCACCCTTT
TAAGTCCACAACTCCGTGGCACCTTTTAAAGTCCACAACTCCGTGGCACCCTTT
Found at i:7237005 original size:146 final size:143
Alignment explanation
Indices: 7236071--7237593 Score: 1211
Period size: 146 Copynumber: 10.6 Consensus size: 143
7236061 CCTTTTAAGT
* * * * * * *
7236071 CCACAACTCCGTGGCATCCCTTT-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACT
1 CCACAAGTCAGTGGCAT-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGT
* * * * * * * * * *
7236135 CCGTGGCACCCTTTT-AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGC-
65 CAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCGGTGGCA
* * *
7236198 ATCGTTTT--AAGT
130 ACCCTTTTCAAAGC
* * * * * * * * * * ** *
7236210 CCATAACTCTGTGGTACCCTTT-TAAGTCCATAACTCCGTGGCACCCTTTTAAAGTGCACAACTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTC
* * * * * * * ** * * * *
7236274 CGTGGCATCGTTTT--AAGTCCACAACTCCGTGGCACCCTTT-AAAGTTCACAACTCCGTGAC-A
66 AGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCGGTGGCAA
* *
7236335 -CCTTTTTAAAGT
131 CCCTTTTCAAAGC
* * * * * * * * * * *
7236347 CCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCA-TGGCATCATTTTTAAGTCCACAACT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT-CAGTGGCACCCTTTTAAAGCCCACAA-G
* * * * * * ** * *
7236411 TC-GTGGTACCC-TTT-AAAGTCCACAACTCCGTGGCACCCTTTTAAAATCCACAACTTC-GTGG
64 TCAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGA-GTCGGTGG
* * *
7236472 C-ATCGTTTT--AAGT
128 CAACCCTTTTCAAAGC
* * * * * * *
7236485 CCACAACTCCGTGGCAT-CTTTTAAAGTCCACAATTTC-GTGGCACCCTTTTAAAGTCCACAACT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA-GTCAGTGGCACCCTTTTAAAGCCCACAAGT
* ** * * ** * **
7236548 CCGTGGCACCCTTTT--AAGTTCACAACTTC-GTGGCATTCTTTTTAAGCCCACAAGTTAGTGGC
65 CAGTGGCACCCTTTTCAAAGCCCACAA-GTCAGTGGCATCCTTTCAAAGCCCACGAGTCGGTGGC
*
7236610 -ACCCATTT-AAAGCC
129 AACCCTTTTCAAAG-C
* * * *
7236624 CACACAAGTCGGTGGCAACCTATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTGAAAGCCC
1 C-CACAAGTCAGTGGCATCC--TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC-TTTTAAAG-CC
* * * * * *
7236689 ACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAATTAGTGGCACCCTTTCAAA-CCCACAAG
58 -CACAAGTCAGTGGC-ACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAG
*
7236753 TCAGTGGC-ACCCTTTT-AAAGC
121 TCGGTGGCAACCCTTTTCAAAGC
* * * * * * *
7236774 CCACAAATCAGTGGCACCCTTTCAAAGCCCAGAAGTCAATGGTACTCTTTTCAAAGCTCACACGA
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGC-C-CACAA
* * *
7236839 GTCGGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAGTTGGTG
63 GTCAGTGGC-ACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCGGTG
*
7236904 GCAACACTTTTCAAAGC
127 GCAACCCTTTTCAAAGC
* *
7236921 CCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAG
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACA--AG
* * *
7236986 TCGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGTTGG
64 TCAGTGGC-ACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCGGTGG
*
7237051 CAACACTTTTCAAAGC
128 CAACCCTTTTCAAAGC
* *
7237067 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAATC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTC
* *
7237132 AGTGGCACCC-TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACGAGTCAGTGG
66 AGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAG-CC-CACGAGTCGGTGG
7237196 CAACCCTTTTCAAAGC
128 CAACCCTTTTCAAAGC
* * * *
7237212 CCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAGTCGGTGGCAACACTTTTCAAAGCCCACAAG
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTT-AAAGCCCACAAG
* * * * *
7237277 TTAGTGGCATCCTTTT-AAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACACGAGTCGATG
64 TCAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAG-CC-CACGAGTCGGTG
7237341 GCAACCCTTTTCAAAGC
127 GCAACCCTTTTCAAAGC
* * ** * * *
7237358 CCATAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGGTGACAACACTTTTCAAAGCCCATAAG
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTTT-AAAGCCCACAAG
*
7237423 TCAATGGCACCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACGAGTCGGTG
64 TCAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAG-CC-CACGAGTCGGTG
7237487 GCAACCCTTTTCAAAGC
127 GCAACCCTTTTCAAAGC
* * *
7237504 CCACAAGTCAGTGGCATCCTTTCAATGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTC
**
7237569 AGTGGCACTTTTTTCAAAGCCCACA
66 AGTGGCACCCTTTTCAAAGCCCACA
7237594 TGAGTTGGTG
Statistics
Matches: 1190, Mismatches: 147, Indels: 88
0.84 0.10 0.06
Matches are distributed among these distances:
135 5 0.00
136 22 0.02
137 135 0.11
138 147 0.12
139 31 0.03
140 20 0.02
141 1 0.00
142 25 0.02
143 25 0.02
144 95 0.08
145 121 0.10
146 372 0.31
147 104 0.09
148 4 0.00
149 27 0.02
150 9 0.01
151 27 0.02
152 20 0.02
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (143 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTC
AGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCGGTGGCAA
CCCTTTTCAAAGC
Found at i:7237221 original size:349 final size:349
Alignment explanation
Indices: 7236568--7237638 Score: 1589
Period size: 349 Copynumber: 3.0 Consensus size: 349
7236558 CTTTTAAGTT
* * * * * * * *
7236568 CACAACTTCGTGGCATTCTTTTTAAGCCCACAAGTTAGTGGCACCCATTTAAAGCCCACACAAGT
1 CACAAGTTAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGT
* * * *
7236633 CGGTGGCAA-CCTATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTGAAAGCCCACACAAGT
66 CGGTGGCAACCCT-TTTCAAAG-CC-CACAAGTCAGTGGC-ATCC-TTTCAAAG-CC-CACGAGT
* * * * *
7236697 CGGTGGCAACCCATTTCAAAGCCCACAAATTAGTGGCACCCTTTCAAA-CCCACAAGTCAGTGGC
124 TGGTGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
7236761 ACCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCAGAAGTCAATGGTACTCTTTTC
189 ACCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
7236826 AAAGCTCACACGAGTCGGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGC
254 AAAGCCCACACGAGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGC
7236891 CCACGAGTTGGTGGCAACACTTTTCAAAGCC
319 CCACGAGTTGGTGGCAACACTTTTCAAAGCC
*
7236922 CACAAGTCAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGT
1 CACAAGTTAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGT
*
7236987 CGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGTTGGC
66 CGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGGTGGC
7237052 AACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
131 AACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
7237117 TAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCC
196 TAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCC
7237182 ACACGAGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAG
261 ACACGAGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAG
*
7237247 TCGGTGGCAACACTTTTCAAAGCC
326 TTGGTGGCAACACTTTTCAAAGCC
*
7237271 CACAAGTTAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACACGAGT
1 CACAAGTTAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGT
* * *
7237336 CGATGGCAACCCTTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGGTGAC
66 CGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGGTGGC
* * *
7237401 AACACTTTTCAAAGCCCATAAGTCAATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTT
131 AACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
* * * * *
7237466 CAAAGCCCACACGAGTCGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAT
196 TAAAGCCCACA--AATCAGTGGC-ACCC-TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
**
7237530 GCCCACA--AGTCAGTGGC-ACCC-TTTCAAAGCCCACAAGTTAGTGGCACTTTTTTCAAAGCCC
257 GCCCACACGAGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCC
*
7237591 ACATGAGTTGGTGGCAACTCTTTTCAAAGCC
321 AC--GAGTTGGTGGCAACACTTTTCAAAGCC
7237622 CATACAAGTTAGTGGCA
1 C--ACAAGTTAGTGGCA
7237639 CCATTTTTTT
Statistics
Matches: 663, Mismatches: 43, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
348 73 0.11
349 387 0.58
350 17 0.03
351 37 0.06
352 32 0.05
353 41 0.06
354 73 0.11
355 3 0.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (349 bp):
CACAAGTTAGTGGCATCCTTTTAAAGCCCACAAATCAGTGGCACCCTTTTAAAGCCCACACGAGT
CGGTGGCAACCCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTTGGTGGC
AACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
TAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCC
ACACGAGTCAGTGGCAACCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACGAG
TTGGTGGCAACACTTTTCAAAGCC
Found at i:7237387 original size:28 final size:28
Alignment explanation
Indices: 7236071--7237640 Score: 1115
Period size: 28 Copynumber: 54.6 Consensus size: 28
7236061 CCTTTTAAGT
* * *
7236071 CCACAACTCCGTGGCATCCCTTT-AAAGT
1 CCACAAGTCAGTGGCA-CCCTTTCAAAGC
* * * *
7236099 CCACAACTCCGTGGCACCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
7236127 CCACAACTCCGTGGCACCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
7236155 CCACAACTCCGTGGCACCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * * *
7236183 CCACAACTCCGTGGCATCGTTT-TAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * * *
7236210 CCATAACTCTGTGGTACCCTTT-TAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * *
7236237 CCATAACTCCGTGGCACCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * * * *
7236265 GCACAACTCCGTGGCATCGTTT-TAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
7236292 CCACAACTCCGTGGCACCCTTT-AAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * * * *
7236319 TCACAACTCCGTGACACCTTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
7236347 CCACAACTCCGTGGCACCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * ** *
7236375 CCACAACTCCA-TGGCATCATTTTTAAGT
1 CCACAAGT-CAGTGGCACCCTTTCAAAGC
* * *
7236403 CCACAACTTC-GTGGTACCCTTT-AAAGT
1 CCACAA-GTCAGTGGCACCCTTTCAAAGC
* * * **
7236430 CCACAACTCCGTGGCACCCTTTTAAAAT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * *
7236458 CCACAACTTC-GTGGCATCGTTT-TAAGT
1 CCACAA-GTCAGTGGCACCCTTTCAAAGC
* * * * *
7236485 CCACAACTCCGTGGCA-TCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
7236512 CCACAATTTC-GTGGCACCCTTTTAAAGT
1 CCACAA-GTCAGTGGCACCCTTTCAAAGC
* * * *
7236540 CCACAACTCCGTGGCACCCTTT-TAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * ** **
7236567 TCACAACTTC-GTGGCATTCTTTTTAAGC
1 CCACAA-GTCAGTGGCACCCTTTCAAAGC
*
7236595 CCACAAGTTAGTGGCACCCATTT-AAAGCC
1 CCACAAGTCAGTGGCACCC-TTTCAAAG-C
* *
7236624 CACACAAGTCGGTGGCAACCTATTTCAAAGCC
1 C-CACAAGTCAGTGGC-ACC-CTTTCAAAG-C
* *
7236656 CACACAAGTCGGTGGCAACCCATTTGAAAGCC
1 C-CACAAGTCAGTGGC-ACCC-TTTCAAAG-C
*
7236688 CACACAAGTCGGTGGCAACCCATTTCAAAGC
1 C-CACAAGTCAGTGGC-ACCC-TTTCAAAGC
* *
7236719 CCACAAATTAGTGGCACCCTTTCAAA-C
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7236746 CCACAAGTCAGTGGCACCCTTTTAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7236774 CCACAAATCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
7236802 CCAGAAGTCAATGGTACTCTTTTCAAAGC
1 CCACAAGTCAGTGGCAC-CCTTTCAAAGC
* *
7236831 TCACACGAGTCGGTGGCAACCCTTTTCAAAGC
1 -C-CACAAGTCAGTGGC-ACCC-TTTCAAAGC
* *
7236863 CCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* ** *
7236891 CCACGAGTTGGTGGCAACACTTTTCAAAGC
1 CCACAAGTCAGTGGC-AC-CCTTTCAAAGC
* *
7236921 CCACAAGTCAGTGGCATCCTTTTAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* *
7236949 CCACAAATCAGTGGCACCCTTTTAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7236977 CCACACGAGTCGGTGGCAACCCTTTTCAAAGC
1 CCACA--AGTCAGTGGC-ACCC-TTTCAAAGC
*
7237009 CCACAAGTCAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
7237037 CCACGAGT-TGTTGGCAACACTTTTCAAAGC
1 CCACAAGTCAG-TGGC-AC-CCTTTCAAAGC
7237067 CCACAAGTCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7237095 CCACAAGTCAGTGGCACCCTTTTAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7237123 CCACAAATCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7237151 CCACAAGTCAGTGGCACTCTTTTCAAAGC
1 CCACAAGTCAGTGGCAC-CCTTTCAAAGC
7237180 CCACACGAGTCAGTGGCAACCCTTTTCAAAGC
1 CCACA--AGTCAGTGGC-ACCC-TTTCAAAGC
* *
7237212 CCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
7237240 CCACGAGTCGGTGGCAACACTTTTCAAAGC
1 CCACAAGTCAGTGGC-AC-CCTTTCAAAGC
* * *
7237270 CCACAAGTTAGTGGCATCCTTTTAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7237298 CCACAAATCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
7237326 CCACACGAGTC-GATGGCAACCCTTTTCAAAGC
1 CCACA--AGTCAG-TGGC-ACCC-TTTCAAAGC
* *
7237358 CCATAAGTCAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* ** * *
7237386 CCACGAGTTGGTGACAACACTTTTCAAAGC
1 CCACAAGTCAGTGGC-AC-CCTTTCAAAGC
* *
7237416 CCATAAGTCAATGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7237444 CCACAAGTCAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
7237472 CCACACGAGTCGGTGGCAACCCTTTTCAAAGC
1 CCACA--AGTCAGTGGC-ACCC-TTTCAAAGC
* *
7237504 CCACAAGTCAGTGGCATCCTTTCAATGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
7237532 CCACAAGTCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* **
7237560 CCACAAGTTAGTGGCACTTTTTTCAAAGC
1 CCACAAGTCAGTGGCAC-CCTTTCAAAGC
** *
7237589 CCACATGAGTTGGTGGCAACTCTTTTCAAAGC
1 CCACA--AGTCAGTGGC-AC-CCTTTCAAAGC
*
7237621 CCATACAAGTTAGTGGCACC
1 CC--ACAAGTCAGTGGCACC
7237641 ATTTTTTTTT
Statistics
Matches: 1306, Mismatches: 171, Indels: 128
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.01
27 197 0.15
28 633 0.48
29 78 0.06
30 179 0.14
31 54 0.04
32 155 0.12
34 3 0.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (28 bp):
CCACAAGTCAGTGGCACCCTTTCAAAGC
Found at i:7238228 original size:20 final size:20
Alignment explanation
Indices: 7238200--7238274 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
7238190 TTTTACTCAG
7238200 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
7238220 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
7238240 ATGTATCAATATATTCTTCA
1 ATGTATCGATACATTTTTCA
*
7238260 ATGTATTGATACATT
1 ATGTATCGATACATT
7238275 ATGTCTTTTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:7238260 original size:40 final size:39
Alignment explanation
Indices: 7238200--7238277 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
7238190 TTTTACTCAG
* *
7238200 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTTCAATATATCGATACAT-TATGA
* * *
7238240 ATGTATCAATATATTCTTCAATGTATTGATACATTATG
1 ATGTATCAATACATTCTTCAATATATCGATACATTATG
7238278 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (39 bp):
ATGTATCAATACATTCTTCAATATATCGATACATTATGA
Found at i:7243567 original size:15 final size:15
Alignment explanation
Indices: 7243549--7243581 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7243539 AAAGATATTT
7243549 TTTAAAAATTTAATA
1 TTTAAAAATTTAATA
*
7243564 TTTAATAATTTAATA
1 TTTAAAAATTTAATA
7243579 TTT
1 TTT
7243582 TTTATTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAAAAATTTAATA
Found at i:7244678 original size:21 final size:21
Alignment explanation
Indices: 7244654--7244709 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
7244644 AAAAAAGGAG
*
7244654 GAGGAGAAGGAGCGAAAGAAA
1 GAGGAGAAGGAGAGAAAGAAA
*
7244675 GAGGAGAAGGAGAGGAAGAAA
1 GAGGAGAAGGAGAGAAAGAAA
* *
7244696 GAAGAGAAAGAGAG
1 GAGGAGAAGGAGAG
7244710 GGAGAAGGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.54, C:0.02, G:0.45, T:0.00
Consensus pattern (21 bp):
GAGGAGAAGGAGAGAAAGAAA
Found at i:7244700 original size:24 final size:25
Alignment explanation
Indices: 7244641--7244737 Score: 65
Period size: 27 Copynumber: 3.7 Consensus size: 25
7244631 GGATGAGAAA
*
7244641 AAGAAA-AA-AGGAGGAGGAGAAGG
1 AAGAAAGAAGAGGAGAAGGAGAAGG
*
7244664 AGCGAAAGAAAGAGGAGAAGGAG-AGG
1 A-AGAAAG-AAGAGGAGAAGGAGAAGG
*
7244690 AAGAAAGAAGAGAAAGAGAGGGAGAAGG
1 AAGAAAGAAGAG---GAGAAGGAGAAGG
**
7244718 AGAGGGAGAAAGAGGAGAAG
1 A-AGAAAG-AAGAGGAGAAG
7244738 AAAAAGAAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
23 1 0.02
24 9 0.16
25 5 0.09
26 6 0.11
27 23 0.40
28 4 0.07
29 4 0.07
30 5 0.09
ACGTcount: A:0.54, C:0.01, G:0.45, T:0.00
Consensus pattern (25 bp):
AAGAAAGAAGAGGAGAAGGAGAAGG
Found at i:7244710 original size:21 final size:21
Alignment explanation
Indices: 7244669--7244749 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 21
7244659 GAAGGAGCGA
* *
7244669 AAGAAAGAGGAGAAGGAGAGG
1 AAGAAAGAAGAGAAAGAGAGG
7244690 AAGAAAGAAGAGAAAGAGAGG
1 AAGAAAGAAGAGAAAGAGAGG
* *
7244711 GAGAAGGAGAGGGAGAAAGAG-GAG
1 AAGAA--AGA-AGAGAAAGAGAG-G
7244735 AAGAAA-AAGAAGAAA
1 AAGAAAGAAG-AGAAA
7244750 AACTGCTCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 1 0.02
21 29 0.59
22 1 0.02
23 4 0.08
24 14 0.29
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (21 bp):
AAGAAAGAAGAGAAAGAGAGG
Found at i:7244714 original size:33 final size:34
Alignment explanation
Indices: 7244667--7244740 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
7244657 GAGAAGGAGC
7244667 GAAAGAAAGAGGAGAAGGAGAGGAAGAAAGAAGA
1 GAAAGAAAGAGGAGAAGGAGAGGAAGAAAGAAGA
* * *
7244701 GAAAGAGAG-GGAGAAGGAGAGGGAGAAAGAGGA
1 GAAAGAAAGAGGAGAAGGAGAGGAAGAAAGAAGA
7244734 G-AAGAAA
1 GAAAGAAA
7244741 AAGAAGAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
32 5 0.14
33 23 0.64
34 8 0.22
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (34 bp):
GAAAGAAAGAGGAGAAGGAGAGGAAGAAAGAAGA
Found at i:7244720 original size:12 final size:12
Alignment explanation
Indices: 7244677--7244727 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
7244667 GAAAGAAAGA
7244677 GGAGAAGGAGAG
1 GGAGAAGGAGAG
*
7244689 GAAGAA--AGA-
1 GGAGAAGGAGAG
* *
7244698 AGAGAAAGAGAG
1 GGAGAAGGAGAG
7244710 GGAGAAGGAGAG
1 GGAGAAGGAGAG
7244722 GGAGAA
1 GGAGAA
7244728 AGAGGAGAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
9 4 0.13
10 3 0.10
11 3 0.10
12 21 0.68
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (12 bp):
GGAGAAGGAGAG
Found at i:7244739 original size:12 final size:12
Alignment explanation
Indices: 7244651--7244740 Score: 52
Period size: 12 Copynumber: 8.0 Consensus size: 12
7244641 AAGAAAAAAG
* *
7244651 GAGGAGGAGAAG
1 GAGGAGAAGAAA
7244663 GAGCGA-AAGAAA
1 GAG-GAGAAGAAA
*
7244675 GAGGAGAAG-GA
1 GAGGAGAAGAAA
7244686 GA-G-GAAGAAA
1 GAGGAGAAGAAA
* *
7244696 GAAGAGAA-AGA
1 GAGGAGAAGAAA
*
7244707 GAGGGAGAAG-GA
1 GA-GGAGAAGAAA
7244719 GAGG-G-AGAAA
1 GAGGAGAAGAAA
7244729 GAGGAGAAGAAA
1 GAGGAGAAGAAA
7244741 AAGAAGAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
9 6 0.10
10 10 0.16
11 13 0.21
12 30 0.49
13 2 0.03
ACGTcount: A:0.52, C:0.01, G:0.47, T:0.00
Consensus pattern (12 bp):
GAGGAGAAGAAA
Found at i:7245456 original size:10 final size:10
Alignment explanation
Indices: 7245441--7245474 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7245431 AGAATATAAC
7245441 ATATGAATAT
1 ATATGAATAT
7245451 ATATGAATAT
1 ATATGAATAT
*
7245461 AATATAAATAT
1 -ATATGAATAT
7245472 ATA
1 ATA
7245475 AACTACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (10 bp):
ATATGAATAT
Found at i:7245470 original size:21 final size:23
Alignment explanation
Indices: 7245432--7245474 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
7245422 CTTAAATAAA
*
7245432 GAATATAACATATGAATATATAT
1 GAATATAACATATAAATATATAT
7245455 GAATAT-A-ATATAAATATATA
1 GAATATAACATATAAATATATA
7245475 AACTACAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 1 0.05
23 6 0.32
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (23 bp):
GAATATAACATATAAATATATAT
Found at i:7247644 original size:33 final size:33
Alignment explanation
Indices: 7247607--7247755 Score: 147
Period size: 33 Copynumber: 4.5 Consensus size: 33
7247597 GACAACTGGC
*
7247607 CTTTTATTTCTGCAGCCTCTTTAGACACCCTGT
1 CTTTTATTTCTGTAGCCTCTTTAGACACCCTGT
* * ** * * *
7247640 CTTTTATTTCTTTCGCCTCAGCT-GATACCTTGC
1 CTTTTATTTCTGTAGCCTC-TTTAGACACCCTGT
* *
7247673 CTTTTATTGCTGTAGCCTCTGTAGACACCCTGT
1 CTTTTATTTCTGTAGCCTCTTTAGACACCCTGT
* * **
7247706 CTTTTACTTCGGTAGCCTCTTTAGACACCCACT
1 CTTTTATTTCTGTAGCCTCTTTAGACACCCTGT
*
7247739 TTTTTATTTCTGTAGCC
1 CTTTTATTTCTGTAGCC
7247756 GATGTAGTTA
Statistics
Matches: 89, Mismatches: 25, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
32 1 0.01
33 87 0.98
34 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.13, T:0.43
Consensus pattern (33 bp):
CTTTTATTTCTGTAGCCTCTTTAGACACCCTGT
Found at i:7249723 original size:29 final size:27
Alignment explanation
Indices: 7249690--7249777 Score: 97
Period size: 29 Copynumber: 3.1 Consensus size: 27
7249680 TGAAAAATTG
7249690 AAAATATTATATTAATATAAGAATATTTT
1 AAAAT-TTATATTAATATAA-AATATTTT
* *
7249719 AAAATTTATATGTAA-ATTATTAATATATT
1 AAAATTTATAT-TAATA-TA-AAATATTTT
*
7249748 AAAATTTATATAAATATAAAATATTTT
1 AAAATTTATATTAATATAAAATATTTT
7249775 AAA
1 AAA
7249778 TATAATTTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
27 10 0.20
28 11 0.22
29 29 0.58
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (27 bp):
AAAATTTATATTAATATAAAATATTTT
Found at i:7250526 original size:15 final size:16
Alignment explanation
Indices: 7250506--7250536 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7250496 CATAAAAATT
7250506 TTTAAATTT-TTTTTA
1 TTTAAATTTATTTTTA
7250521 TTTAAATTTATTTTTA
1 TTTAAATTTATTTTTA
7250537 ATTTGATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTAAATTTATTTTTA
Found at i:7251199 original size:31 final size:30
Alignment explanation
Indices: 7251147--7251204 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
7251137 TATAAATATT
*
7251147 ATTTTTTATATTATTTTATTTTTATTTAGGA
1 ATTTTTTATATTA-TTTAATTTTATTTAGGA
*
7251178 ATTTTTCTA-ATTCTTTAATTTTATTTA
1 ATTTTT-TATATTATTTAATTTTATTTA
7251205 TCAATTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 13 0.54
31 9 0.38
32 2 0.08
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (30 bp):
ATTTTTTATATTATTTAATTTTATTTAGGA
Found at i:7253265 original size:153 final size:151
Alignment explanation
Indices: 7253040--7253383 Score: 378
Period size: 151 Copynumber: 2.3 Consensus size: 151
7253030 CCATAGGGGT
* * * *
7253040 ATTTTTAT-ATTTTCTTAGAACCGAGTCTTAGGTTATCACCAGATCTGCTTCTATGCCGAAAGTG
1 ATTTTAATAATTTTTTTAGAACCGAGTCTTAGGTTATCACCAGATCTGCTTCCATGCCGAAAGTA
* * *
7253104 TACATTTAGGATAGGTTCATCCCTTTTACCTTTTAAAGTTCTTTAGGGTTATCAAGATACTTTTA
66 TACATTTAGGATAGGTTCATCCCTTTTA--TTTTAAAGTCCTTTAGGCTTAACAAGATACTTTTA
7253169 AGTCGAAAGCATC-CTCT-AGAGGC
129 AGTCGAAAGCATCTC-CTAAG-GGC
* *
7253192 ATTTTAATAATTTTTTTAAAACCGAGTCTTAGGTTATCACTC-GATC--CATCTCCATTCC-AAA
1 ATTTTAATAATTTTTTTAGAACCGAGTCTTAGGTTATCAC-CAGATCTGC-T-TCCATGCCGAAA
* ** * * *
7253253 GGTATACGTTTAGGATAGGTTCATCTTTTTTATTTTTAAGTCCTTTAGGCTTAACAGGATTCTTT
63 -GTATACATTTAGGATAGGTTCATCCCTTTTATTTTAAAGTCCTTTAGGCTTAACAAGATACTTT
* * *
7253318 TACGTCGAAGGTATCTCCTAAGGGC
127 TAAGTCGAAAGCATCTCCTAAGGGC
* * *
7253343 ATTTTAGTAATATTTTTAGAACCGAATCTTAGGTTATCACC
1 ATTTTAATAATTTTTTTAGAACCGAGTCTTAGGTTATCACC
7253384 GGGTCTCTTT
Statistics
Matches: 163, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
150 1 0.01
151 81 0.50
152 14 0.09
153 66 0.40
154 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (151 bp):
ATTTTAATAATTTTTTTAGAACCGAGTCTTAGGTTATCACCAGATCTGCTTCCATGCCGAAAGTA
TACATTTAGGATAGGTTCATCCCTTTTATTTTAAAGTCCTTTAGGCTTAACAAGATACTTTTAAG
TCGAAAGCATCTCCTAAGGGC
Found at i:7253373 original size:151 final size:150
Alignment explanation
Indices: 7252975--7253383 Score: 402
Period size: 153 Copynumber: 2.7 Consensus size: 150
7252965 ATCATCATTA
* * * * * * *
7252975 TTTATCTTTTTAAGTCATTTAGGGTTACCGGGATACTTTCATGTCGAAGGTATACCCATAGGGGT
1 TTTA-CTTTTTAAGTCCTTTAGGGTTAACAGGATACTTTTAAGTCGAAGGTAT-CCC-TAAGGGC
*
7253040 ATTTT-T-ATATTTTCTTAGAACCGAGTCTTAGGTTATCACCAGATCTGCTTCTATGCCGAAAGT
63 ATTTTATAATA-TTT-TTAGAACCGAGTCTTAGGTTATCACCAGATCTGCTTCCATGCCGAAAGT
*
7253103 GTACATTTAGGATAGGTTCATCCCT
126 ATACATTTAGGATAGGTTCATCCCT
* * * * * *
7253128 TTTACCTTTTAAAGTTCTTTAGGGTTATCAAGATACTTTTAAGTCGAAAGCATCCTCT-AGAGGC
1 TTTA-CTTTTTAAGTCCTTTAGGGTTAACAGGATACTTTTAAGTCGAAGGTATCC-CTAAG-GGC
* * *
7253192 ATTTTAATAATTTTTTTAAAACCGAGTCTTAGGTTATCACTC-GATC--CATCTCCATTCC-AAA
63 ATTTT-ATAATATTTTTAGAACCGAGTCTTAGGTTATCAC-CAGATCTGC-T-TCCATGCCGAAA
* **
7253253 GGTATACGTTTAGGATAGGTTCATCTTT
124 -GTATACATTTAGGATAGGTTCATCCCT
* * *
7253281 TTTA-TTTTTAAGTCCTTTAGGCTTAACAGGATTCTTTTACGTCGAAGGTATCTCCTAAGGGCAT
1 TTTACTTTTTAAGTCCTTTAGGGTTAACAGGATACTTTTAAGTCGAAGGTATC-CCTAAGGGCAT
*
7253345 TTTAGTAATATTTTTAGAACCGAATCTTAGGTTATCACC
65 TTTA-TAATATTTTTAGAACCGAGTCTTAGGTTATCACC
7253384 GGGTCTCTTT
Statistics
Matches: 211, Mismatches: 33, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
150 2 0.01
151 81 0.38
152 17 0.08
153 104 0.49
154 5 0.02
155 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (150 bp):
TTTACTTTTTAAGTCCTTTAGGGTTAACAGGATACTTTTAAGTCGAAGGTATCCCTAAGGGCATT
TTATAATATTTTTAGAACCGAGTCTTAGGTTATCACCAGATCTGCTTCCATGCCGAAAGTATACA
TTTAGGATAGGTTCATCCCT
Found at i:7256732 original size:88 final size:88
Alignment explanation
Indices: 7256469--7256883 Score: 269
Period size: 88 Copynumber: 4.7 Consensus size: 88
7256459 TCTACTAAAT
* * *
7256469 ATTTTAAATTTTCTTTTCGTATAATTTTATCTTT-GGAAAAACTCTAACCCAACTACTCCAAGGA
1 ATTTTAAATTTTCTTTT-GTATAATTTTATCTTTAGG-GAAACTCTAACCCTACTACTCCAAGGG
* *
7256533 GATGCTCTAACCCCG-ATATTC-AAAA
64 GATACTCCAA--CCGTATATTCAAAAA
* ** * * * *
7256558 A-TTCAAATTTTCCCTTGTATAATTTTAT-TCTTAGGGAAACT-TAACCCTATTACTCTAAGAGA
1 ATTTTAAATTTTCTTTTGTATAATTTTATCT-TTAGGGAAACTCTAACCCTACTACTCCAAGGGG
*
7256620 ATACTCCAACCTTAT-TCTACCAAAAA
65 ATACTCCAACCGTATAT-T--CAAAAA
* * *
7256646 ATTTTAAATTTT-TTTTGTATAATTTTATCTTTAGGGAAACTCCAACTCTACTACTCCGAGGGGA
1 ATTTTAAATTTTCTTTTGTATAATTTTATCTTTAGGGAAACTCTAACCCTACTACTCCAAGGGGA
7256710 TACTCCAACCGTAGTATTCAAAAA
66 TACTCCAACCGTA-TATTCAAAAA
* ** ** * * * * * * *
7256734 ATTAT-AATTTTCCCTTACATAATCTTATCCTTGGGGAAACT-TCATCCCTACAACTTCATGGGG
1 ATTTTAAATTTTCTTTTGTATAATTTTATCTTTAGGGAAACTCT-AACCCTACTACTCCAAGGGG
* * *
7256797 ATATTCCAACCTTGT-TCTACCAAAAA
65 ATACTCCAACC--GTATAT-TCAAAAA
* * * * * * *
7256823 ATTTCAAATTTTCTCTTCGTGTAATTTTATCTTTA-AGAATACTCCATCCCTACTATTCCAA
1 ATTTTAAATTTTCT-TTTGTATAATTTTATCTTTAGGGAA-ACTCTAACCCTACTACTCCAA
7256884 AAAAATAATC
Statistics
Matches: 246, Mismatches: 59, Indels: 40
0.71 0.17 0.12
Matches are distributed among these distances:
84 3 0.01
85 3 0.01
86 23 0.09
87 26 0.11
88 102 0.41
89 47 0.19
90 14 0.06
91 28 0.11
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (88 bp):
ATTTTAAATTTTCTTTTGTATAATTTTATCTTTAGGGAAACTCTAACCCTACTACTCCAAGGGGA
TACTCCAACCGTATATTCAAAAA
Found at i:7256773 original size:176 final size:177
Alignment explanation
Indices: 7256446--7256883 Score: 453
Period size: 177 Copynumber: 2.5 Consensus size: 177
7256436 CTAAAGGGAC
* * *
7256446 ACTCCAACCATGTTCTA-CTAAATATTTTAAATTTTCTTTTCGTATAATTTTATCTTT-GGAAAA
1 ACTCCAACCTTGTTCTACCAAAAAATTTTAAATTTTCTTTT-GTATAATTTTATCTTTAGGAAAA
* * *
7256509 ACTCTAACCCAACTACTCCAAGGAGATGCTCTAACCCCGATATTCAAAAATTCAAATTTTCCCTT
65 ACTCCAACCCAACTACTCCAAGGAGATACTCCAA-CCCGATATTCAAAAATTCAAATTTTCCCTT
** * * **
7256574 GTATAATTTTATTCTTAGGGAAACTT-AACCCTATTAC-TCTAAGAGAAT
129 ACATAATCTTATCCTTAGGGAAACTTCAACCCTACAACTTC-AAGAGAAT
* *
7256622 ACTCCAACCTTATTCTACCAAAAAATTTTAAATTTT-TTTTGTATAATTTTATCTTTAGG-GAAA
1 ACTCCAACCTTGTTCTACCAAAAAATTTTAAATTTTCTTTTGTATAATTTTATCTTTAGGAAAAA
* * * *
7256685 CTCCAACTCTACTACTCCGAGGGGATACTCCAA-CCGTAGTATTCAAAAAATT-ATAATTTTCCC
66 CTCCAACCCAACTACTCCAAGGAGATACTCCAACCCG-A-TATTC-AAAAATTCA-AATTTTCCC
* * * * *
7256748 TTACATAATCTTATCCTTGGGGAAACTTCATCCCTACAACTTCATGGGGAT
127 TTACATAATCTTATCCTTAGGGAAACTTCAACCCTACAACTTCAAGAGAAT
* * * * * *
7256799 ATTCCAACCTTGTTCTACCAAAAAATTTCAAATTTTCTCTTCGTGTAATTTTATCTTTAAG-AAT
1 ACTCCAACCTTGTTCTACCAAAAAATTTTAAATTTTCT-TTTGTATAATTTTATCTTTAGGAAAA
* * *
7256863 ACTCCATCCCTACTATTCCAA
65 ACTCCAACCCAACTACTCCAA
7256884 AAAAATAATC
Statistics
Matches: 217, Mismatches: 35, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
173 3 0.01
174 1 0.00
175 51 0.24
176 60 0.28
177 62 0.29
178 3 0.01
179 37 0.17
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (177 bp):
ACTCCAACCTTGTTCTACCAAAAAATTTTAAATTTTCTTTTGTATAATTTTATCTTTAGGAAAAA
CTCCAACCCAACTACTCCAAGGAGATACTCCAACCCGATATTCAAAAATTCAAATTTTCCCTTAC
ATAATCTTATCCTTAGGGAAACTTCAACCCTACAACTTCAAGAGAAT
Found at i:7264504 original size:32 final size:33
Alignment explanation
Indices: 7264453--7264515 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
7264443 ATATTATAAA
* *
7264453 TTTATATAAATTTTTACATATTAATA-ATTTAT
1 TTTATATAAATCTTAACATATTAATATATTTAT
* *
7264485 TTTATATAAGTCTTAACATATTTATATATTT
1 TTTATATAAATCTTAACATATTAATATATTT
7264516 TTATCATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 22 0.85
33 4 0.15
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (33 bp):
TTTATATAAATCTTAACATATTAATATATTTAT
Found at i:7264525 original size:19 final size:20
Alignment explanation
Indices: 7264501--7264539 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7264491 TAAGTCTTAA
*
7264501 CATATTTAT-ATATTTTTAT
1 CATATTCATGATATTTTTAT
*
7264520 CATATTCATGTTATTTTTAT
1 CATATTCATGATATTTTTAT
7264540 ATAAAATCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (20 bp):
CATATTCATGATATTTTTAT
Found at i:7264670 original size:19 final size:19
Alignment explanation
Indices: 7264655--7264693 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7264645 AAATAAAAAT
7264655 ATAAAAATTATTTAAATAA
1 ATAAAAATTATTTAAATAA
*
7264674 ATAATAATTATTTAATATAA
1 ATAAAAATTATTTAA-ATAA
7264694 TTTAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
ATAAAAATTATTTAAATAA
Found at i:7264692 original size:35 final size:37
Alignment explanation
Indices: 7264652--7264735 Score: 97
Period size: 35 Copynumber: 2.4 Consensus size: 37
7264642 TTAAAATAAA
*
7264652 AATATAAAAATTATTTAAA-TAAATAATAATT-ATTT
1 AATATAAAATTTATTTAAAGTAAATAATAATTAATTT
* *
7264687 AATAT--AATTTAATTTAAAGTATATAATTATTAATTT
1 AATATAAAATTT-ATTTAAAGTAAATAATAATTAATTT
7264723 AAT-TAAAATTTAT
1 AATATAAAATTTAT
7264736 AAATATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 16 0.39
36 9 0.22
37 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (37 bp):
AATATAAAATTTATTTAAAGTAAATAATAATTAATTT
Found at i:7264736 original size:25 final size:26
Alignment explanation
Indices: 7264687--7264744 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
7264677 ATAATTATTT
*
7264687 AATA-TAATTTAATTTAAAGTATATA
1 AATATTAATTTAATTTAAAATATATA
* *
7264712 ATTATTAATTTAA-TTAAAATTTATA
1 AATATTAATTTAATTTAAAATATATA
7264737 AATATTAA
1 AATATTAA
7264745 AAATCTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
AATATTAATTTAATTTAAAATATATA
Found at i:7266742 original size:29 final size:29
Alignment explanation
Indices: 7266704--7266769 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
7266694 TTAATAGACA
*
7266704 ATAATTAAAAAATAAAAATTAATTT-AAT
1 ATAATAAAAAAATAAAAATTAATTTAAAT
* *
7266732 AGTAATAAAAATATAAAAATTTATTTAAAT
1 A-TAATAAAAAAATAAAAATTAATTTAAAT
7266762 ATAATAAA
1 ATAATAAA
7266770 CTACTTTAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 28 0.85
30 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (29 bp):
ATAATAAAAAAATAAAAATTAATTTAAAT
Found at i:7267095 original size:108 final size:109
Alignment explanation
Indices: 7266892--7267109 Score: 393
Period size: 109 Copynumber: 2.0 Consensus size: 109
7266882 GGTACCCCAC
7266892 CACGTGTTCAAGAAGATGGGCATCGCTGGCGCTAACCCAGTTACATGCATCGTGCCCAAAAGTGG
1 CACGTGTTCAAGAAGATGGGCATCGCTGGCGCTAACCCAGTTACATGCATCGTGCCCAAAAGTGG
7266957 CTAGTTTTTACTTTTTCGAAGGGTACGACGTTTGCTCCTTTTTG
66 CTAGTTTTTACTTTTTCGAAGGGTACGACGTTTGCTCCTTTTTG
* *
7267001 CACGTGTTCAAGAAGATGGGCATCGCTGGCGCTACCCCAGTTACATGCATCGTG-GCAAAAGTGG
1 CACGTGTTCAAGAAGATGGGCATCGCTGGCGCTAACCCAGTTACATGCATCGTGCCCAAAAGTGG
* *
7267065 GTAGTTTTTACTTTTTCGATGGGTACGACGTTTGCTCCTTTTTG
66 CTAGTTTTTACTTTTTCGAAGGGTACGACGTTTGCTCCTTTTTG
7267109 C
1 C
7267110 CATTGTCCTC
Statistics
Matches: 105, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
108 52 0.50
109 53 0.50
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (109 bp):
CACGTGTTCAAGAAGATGGGCATCGCTGGCGCTAACCCAGTTACATGCATCGTGCCCAAAAGTGG
CTAGTTTTTACTTTTTCGAAGGGTACGACGTTTGCTCCTTTTTG
Found at i:7268559 original size:3 final size:3
Alignment explanation
Indices: 7268553--7268608 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
7268543 GAAAAAAAAA
7268553 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
7268601 ATG ATG AT
1 ATG ATG AT
7268609 AATAATAATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:7269918 original size:12 final size:12
Alignment explanation
Indices: 7269901--7269956 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
7269891 CAATGAGCAG
*
7269901 TTCTTCTTCTTT
1 TTCTTCTTCTCT
7269913 TTCTTCTTCTCT
1 TTCTTCTTCTCT
* * *
7269925 TTCGTCCTCTCC
1 TTCTTCTTCTCT
7269937 TTC-TCTTTCTCT
1 TTCTTC-TTCTCT
7269949 TTC-TCTTC
1 TTCTTCTTC
7269957 CATCTCCCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
11 5 0.14
12 32 0.86
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (12 bp):
TTCTTCTTCTCT
Found at i:7269953 original size:18 final size:18
Alignment explanation
Indices: 7269907--7269953 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7269897 GCAGTTCTTC
* *
7269907 TTCTTTTTCTTCTTCTCT
1 TTCTCTTTCTCCTTCTCT
*
7269925 TTCGTC-CTCTCCTTCTCT
1 TTC-TCTTTCTCCTTCTCT
7269943 TTCTCTTTCTC
1 TTCTCTTTCTC
7269954 TTCCATCTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
17 2 0.09
18 20 0.87
19 1 0.04
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (18 bp):
TTCTCTTTCTCCTTCTCT
Found at i:7270003 original size:24 final size:21
Alignment explanation
Indices: 7269934--7270004 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
7269924 TTTCGTCCTC
** *
7269934 TCCTTCTCTTTCTCTTTCTCT
1 TCCTTCTCCCTCTTTTTCTCT
* *
7269955 TCCATCTCCCTCTTTTTCTCC
1 TCCTTCTCCCTCTTTTTCTCT
7269976 TCCTTCTTCCGCTCTTTTTCCTCT
1 TCCTTC-TCC-CTCTTTTT-CTCT
7270000 TCCTT
1 TCCTT
7270005 TTTCTCTTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
21 21 0.52
22 3 0.08
23 8 0.20
24 8 0.20
ACGTcount: A:0.01, C:0.42, G:0.01, T:0.55
Consensus pattern (21 bp):
TCCTTCTCCCTCTTTTTCTCT
Found at i:7271136 original size:15 final size:16
Alignment explanation
Indices: 7271100--7271137 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
7271090 AAACATAATA
7271100 AAAAATATTAAATTATT
1 AAAAA-ATTAAATTATT
7271117 -AAAAATTAAATT-TT
1 AAAAAATTAAATTATT
7271131 AAAAAAT
1 AAAAAAT
7271138 ATTTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.10
15 14 0.70
16 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAAAATTAAATTATT
Found at i:7271592 original size:19 final size:20
Alignment explanation
Indices: 7271570--7271607 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7271560 ATGAAAAAAA
7271570 AAATGATA-TAACTAATTTG
1 AAATGATAGTAACTAATTTG
*
7271589 AAATGGTAGTAACTAATTT
1 AAATGATAGTAACTAATTT
7271608 AACTTGACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.37
Consensus pattern (20 bp):
AAATGATAGTAACTAATTTG
Found at i:7272246 original size:13 final size:13
Alignment explanation
Indices: 7272226--7272257 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7272216 TTGATATTTC
7272226 AATTTTTTACAAT
1 AATTTTTTACAAT
*
7272239 ACTTTTTTACAAT
1 AATTTTTTACAAT
7272252 AATTTT
1 AATTTT
7272258 AAACAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTTTTACAAT
Found at i:7272590 original size:17 final size:17
Alignment explanation
Indices: 7272568--7272603 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7272558 TATGTATTTT
7272568 AATATTT-TTTTATAAAA
1 AATATTTATTTTA-AAAA
7272585 AATATTTATTTTAAAAA
1 AATATTTATTTTAAAAA
7272602 AA
1 AA
7272604 CTTCTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATATTTATTTTAAAAA
Found at i:7274291 original size:12 final size:12
Alignment explanation
Indices: 7274274--7274298 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7274264 AATTATATTA
7274274 TTTTATTATTTT
1 TTTTATTATTTT
7274286 TTTTATTATTTT
1 TTTTATTATTTT
7274298 T
1 T
7274299 GTATTTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTATTATTTT
Found at i:7278537 original size:268 final size:268
Alignment explanation
Indices: 7278060--7278598 Score: 1033
Period size: 268 Copynumber: 2.0 Consensus size: 268
7278050 AATATGCAAG
7278060 GGTAATTGGTTGTCTTATGTATTTAATGACTTGTACAAAGCTGGATATTGCATTTGTCATTGGAA
1 GGTAATTGGTTGTCTTATGTATTTAATGACTTGTACAAAGCTGGATATTGCATTTGTCATTGGAA
7278125 AATTAAGTAGATACACTAGTAATCCAAGTGATTTACATTGGCAAGCTATTAATAGAGTACTTAGA
66 AATTAAGTAGATACACTAGTAATCCAAGTGATTTACATTGGCAAGCTATTAATAGAGTACTTAGA
7278190 TATTTAAAGAAAACTATTAACTATGGACTATGCTATAATGGATATCCTTCAGTTCTTGAAGGGTA
131 TATTTAAAGAAAACTATTAACTATGGACTATGCTATAATGGATATCCTTCAGTTCTTGAAGGGTA
7278255 TTCCGATGCTAGTTGGATTACAAGCTTGGAAGATCATGCTTCTACAAGTGGATGGATCCTCATTC
196 TTCCGATGCTAGTTGGATTACAAGCTTGGAAGATCATGCTTCTACAAGTGGATGGATCCTCATTC
7278320 TTGGTGGA
261 TTGGTGGA
*
7278328 GGTAATTGGTTGTCTTATGTATTTAATGACTTGTACAAGGCTGGATATTGCATTTGTCATTGGAA
1 GGTAATTGGTTGTCTTATGTATTTAATGACTTGTACAAAGCTGGATATTGCATTTGTCATTGGAA
*
7278393 AGTTAAGTAGATACACTAGTAATCCAAGTGATTTACATTGGCAAGCTATTAATAGAGTACTTAGA
66 AATTAAGTAGATACACTAGTAATCCAAGTGATTTACATTGGCAAGCTATTAATAGAGTACTTAGA
*
7278458 TATTTAAAGAAAACTATTCACTATGGACTATGCTATAATGGATATCCTTCAGTTCTTGAAGGGTA
131 TATTTAAAGAAAACTATTAACTATGGACTATGCTATAATGGATATCCTTCAGTTCTTGAAGGGTA
* *
7278523 TTCCGATGCTAGTTGGATTACAAGCTTGGAAGATCATGCTTCTACAAGTGGATGGATCTTTATTC
196 TTCCGATGCTAGTTGGATTACAAGCTTGGAAGATCATGCTTCTACAAGTGGATGGATCCTCATTC
7278588 TTGGTGGA
261 TTGGTGGA
7278596 GGT
1 GGT
7278599 GCTATTTCTT
Statistics
Matches: 266, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
268 266 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (268 bp):
GGTAATTGGTTGTCTTATGTATTTAATGACTTGTACAAAGCTGGATATTGCATTTGTCATTGGAA
AATTAAGTAGATACACTAGTAATCCAAGTGATTTACATTGGCAAGCTATTAATAGAGTACTTAGA
TATTTAAAGAAAACTATTAACTATGGACTATGCTATAATGGATATCCTTCAGTTCTTGAAGGGTA
TTCCGATGCTAGTTGGATTACAAGCTTGGAAGATCATGCTTCTACAAGTGGATGGATCCTCATTC
TTGGTGGA
Found at i:7279798 original size:14 final size:13
Alignment explanation
Indices: 7279751--7279801 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 13
7279741 CACGTGCAAA
7279751 ATTA-ATTATTTT
1 ATTATATTATTTT
* * *
7279763 TTTA-ATTAATTA
1 ATTATATTATTTT
7279775 ATTATATTATTTT
1 ATTATATTATTTT
7279788 ATTATTATTATTTT
1 ATTA-TATTATTTT
7279802 TATATTTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
12 12 0.39
13 10 0.32
14 9 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTATATTATTTT
Found at i:7281713 original size:15 final size:17
Alignment explanation
Indices: 7281673--7281714 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
7281663 AAACCAATTA
7281673 AAAATTATTTATTATTT
1 AAAATTATTTATTATTT
7281690 AATATATTATTT-TTA-TT
1 AA-A-ATTATTTATTATTT
7281707 AAAATTAT
1 AAAATTAT
7281715 AATTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.22
16 1 0.04
17 6 0.26
18 4 0.17
19 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AAAATTATTTATTATTT
Found at i:7286002 original size:80 final size:80
Alignment explanation
Indices: 7285783--7286044 Score: 301
Period size: 80 Copynumber: 3.3 Consensus size: 80
7285773 TACGGGATTG
* * * * * *
7285783 GAGTACCCCCAATGGTGAAAATTTTGATAGTTTGGAAGTAAAAACAGAGTTTGAGTATTCCCTCA
1 GAGTATCCCCAATGGTGAAAATTTTGATAGTTTGGAAGTAAAAACGGGGTTAGAGTATCCCCTCG
* *
7285848 AAAATGATAGAGTTA
66 AAAATGATGGGGTTA
* * * ** * *
7285863 TAGTATCTCCAATGGTGAAAAATTCAATAGTTTTGGAATTAAAAACGGGGTTGGAGTATCCCCTC
1 GAGTATCCCCAATGGTGAAAATTTTGATAG-TTTGGAAGTAAAAACGGGGTTAGAGTATCCCCTC
7285928 GAAAATGATGGGGTTA
65 GAAAATGATGGGGTTA
* * *
7285944 GAGTGTCCCCGATGGTGAAAATTTTGATA-TTTAGGAAGTAAAAACGGGGTTAGAGTATCCCTTC
1 GAGTATCCCCAATGGTGAAAATTTTGATAGTTT-GGAAGTAAAAACGGGGTTAGAGTATCCCCTC
*
7286008 GAAAATGATGGGGTTG
65 GAAAATGATGGGGTTA
* * *
7286024 GAGAATGCCCGATGGTGAAAA
1 GAGTATCCCCAATGGTGAAAA
7286045 ATTAATATTT
Statistics
Matches: 152, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
79 3 0.02
80 85 0.56
81 64 0.42
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (80 bp):
GAGTATCCCCAATGGTGAAAATTTTGATAGTTTGGAAGTAAAAACGGGGTTAGAGTATCCCCTCG
AAAATGATGGGGTTA
Found at i:7286184 original size:80 final size:80
Alignment explanation
Indices: 7286100--7286274 Score: 244
Period size: 79 Copynumber: 2.2 Consensus size: 80
7286090 CCTAATAGTG
* * *
7286100 AAAAATCGATATTTTGAAAATAAAAAAGGGGATGGAGTATCCCCTTAAAAATAATGGGGTTGGAG
1 AAAAATCGATATTTTGAAAATAAAAAAGGGGATGGAGTATCCCCTCAAAAATAATGAGGTTGGAA
* *
7286165 TATCCTCAATGGTGA
66 TATCCCCAATGGTAA
* * *
7286180 AAAAA-CGATATTTTGAAAATAAAAAAGGGGTTGGAGTATCCCCTCAAAAATGATGAGTTTGGAA
1 AAAAATCGATATTTTGAAAATAAAAAAGGGGATGGAGTATCCCCTCAAAAATAATGAGGTTGGAA
*
7286244 TATCCCCGATGGTAA
66 TATCCCCAATGGTAA
*
7286259 AAAAATTGATAATTTT
1 AAAAATCGAT-ATTTT
7286275 TTATGAAAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
79 70 0.84
80 8 0.10
81 5 0.06
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (80 bp):
AAAAATCGATATTTTGAAAATAAAAAAGGGGATGGAGTATCCCCTCAAAAATAATGAGGTTGGAA
TATCCCCAATGGTAA
Found at i:7287871 original size:67 final size:67
Alignment explanation
Indices: 7287759--7287891 Score: 205
Period size: 67 Copynumber: 2.0 Consensus size: 67
7287749 ACAAGAATAC
* *
7287759 ATGAATGCATGGAGTCTTAAAGTGTTCAATGAGCATACTAATGG-TTTCTAAGATGACATTGATG
1 ATGAATGCATGGAGCCCTAAAGTGTTCAATGAGCATACTAATGGTTTTCTAAGATGACATTGATG
7287823 GT
66 GT
* * *
7287825 ATGAATGCATAGGAGCCCTAAGGTGTTCAATGAGCATACTAGTGGTTTTTTAAGATGACATTGAT
1 ATGAATGCAT-GGAGCCCTAAAGTGTTCAATGAGCATACTAATGGTTTTCTAAGATGACATTGAT
7287890 GG
65 GG
7287892 CAAAATAGAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
66 10 0.17
67 30 0.50
68 20 0.33
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.32
Consensus pattern (67 bp):
ATGAATGCATGGAGCCCTAAAGTGTTCAATGAGCATACTAATGGTTTTCTAAGATGACATTGATG
GT
Found at i:7289255 original size:23 final size:20
Alignment explanation
Indices: 7289205--7289255 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7289195 TTAATTATAA
7289205 AAATAAATAAATATTAAAAT
1 AAATAAATAAATATTAAAAT
*
7289225 AAAT-AATAATATTTTAATAAT
1 AAATAAATAA-ATATTAA-AAT
7289246 ATAATAAATA
1 A-AATAAATA
7289256 TGGAAATGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 10 0.38
21 4 0.15
22 3 0.12
23 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATAAATAAATATTAAAAT
Found at i:7292536 original size:15 final size:15
Alignment explanation
Indices: 7292518--7292550 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7292508 AAAGATATTT
7292518 TTTAAAAATTTAATA
1 TTTAAAAATTTAATA
*
7292533 TTTAATAATTTAATA
1 TTTAAAAATTTAATA
7292548 TTT
1 TTT
7292551 TTTATTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAAAAATTTAATA
Found at i:7293592 original size:21 final size:21
Alignment explanation
Indices: 7293568--7293639 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
7293558 GAAGAGAACA
*
7293568 AGAAAGAGAAAAAGAAGGAGG
1 AGAAAGAGAAAAAGAAGGAAG
7293589 AG-AAG-GAACGAAAGAAGGAAG
1 AGAAAGAGAA--AAAGAAGGAAG
**
7293610 AGAAAGAGAGGAAGAAGGAAG
1 AGAAAGAGAAAAAGAAGGAAG
*
7293631 AGAAGGAGA
1 AGAAAGAGA
7293640 GGGAGAAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 3 0.07
20 3 0.07
21 32 0.74
22 3 0.07
23 2 0.05
ACGTcount: A:0.58, C:0.01, G:0.40, T:0.00
Consensus pattern (21 bp):
AGAAAGAGAAAAAGAAGGAAG
Found at i:7293606 original size:12 final size:13
Alignment explanation
Indices: 7293555--7293687 Score: 54
Period size: 12 Copynumber: 10.6 Consensus size: 13
7293545 GGAAGAAGAT
*
7293555 AAGGAAGAG-AAC
1 AAGGAAGAGAAAG
*
7293567 AAGAAAGAGAAA-
1 AAGGAAGAGAAAG
*
7293579 AA-GAAG-GAGGAG
1 AAGGAAGAGA-AAG
*
7293591 AAGGAA-CGAAAG
1 AAGGAAGAGAAAG
7293603 AAGGAAGAGAAAG
1 AAGGAAGAGAAAG
7293616 AGAGGAAGAAGGAAGAG
1 A-AGGAAG-A-GAA-AG
**
7293633 AAGG-AGAGGGAG
1 AAGGAAGAGAAAG
*
7293645 AAGG-AGAGGAAG
1 AAGGAAGAGAAAG
* *
7293657 AAAGAGGAG-AAG
1 AAGGAAGAGAAAG
7293669 AA-GAAGA-AGAAG
1 AAGGAAGAGA-AAG
7293681 AA-GAAGA
1 AAGGAAGA
7293688 AAAAAGACTG
Statistics
Matches: 97, Mismatches: 11, Indels: 26
0.72 0.08 0.19
Matches are distributed among these distances:
10 2 0.02
11 8 0.08
12 51 0.53
13 17 0.18
14 7 0.07
15 3 0.03
16 6 0.06
17 3 0.03
ACGTcount: A:0.58, C:0.02, G:0.41, T:0.00
Consensus pattern (13 bp):
AAGGAAGAGAAAG
Found at i:7293640 original size:21 final size:21
Alignment explanation
Indices: 7293579--7293688 Score: 93
Period size: 21 Copynumber: 5.2 Consensus size: 21
7293569 GAAAGAGAAA
* *
7293579 AAGAAGGAGGAGAAGGA-ACGA
1 AAGAAGGAAGAGAAGGAGA-GG
*
7293600 AAGAAGGAAGAGAAAGAGAGG
1 AAGAAGGAAGAGAAGGAGAGG
7293621 AAGAAGGAAGAGAAGGAGAGG
1 AAGAAGGAAGAGAAGGAGAGG
* *
7293642 GAGAAGG-AGAGGAAGAAAGAGG
1 AAGAAGGAAGA-GAAG-GAGAGG
* *
7293664 -AGAA-GAAGAAGAAGAAGAAG
1 AAGAAGGAAG-AGAAGGAGAGG
7293684 AAGAA
1 AAGAA
7293689 AAAAGACTGC
Statistics
Matches: 76, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
20 9 0.12
21 60 0.79
22 7 0.09
ACGTcount: A:0.56, C:0.01, G:0.43, T:0.00
Consensus pattern (21 bp):
AAGAAGGAAGAGAAGGAGAGG
Found at i:7293672 original size:3 final size:3
Alignment explanation
Indices: 7293620--7293688 Score: 52
Period size: 3 Copynumber: 23.0 Consensus size: 3
7293610 AGAAAGAGAG
* * * * * *
7293620 GAA GAA GGAA G-A GAA GGA GAG GGA GAA GGA GAG GAA GAA -AGA GGA
1 GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A GAA
7293665 GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA
7293689 AAAAGACTGC
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
2 3 0.06
3 44 0.88
4 3 0.06
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7296230 original size:21 final size:21
Alignment explanation
Indices: 7296206--7296246 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7296196 TTATTACAAT
7296206 ATAAAAAAGATGTAATTATTA
1 ATAAAAAAGATGTAATTATTA
7296227 ATAAAAAAGATGTAATTATT
1 ATAAAAAAGATGTAATTATT
7296247 TTATTATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (21 bp):
ATAAAAAAGATGTAATTATTA
Found at i:7296639 original size:33 final size:33
Alignment explanation
Indices: 7296602--7296750 Score: 192
Period size: 33 Copynumber: 4.5 Consensus size: 33
7296592 GACAACTTGC
*
7296602 CTTTTATTTCTGTAGCCTCTTTAGACACCCTGT
1 CTTTTATTTCTGTAGCCTCTGTAGACACCCTGT
* * *
7296635 CTTTTATTTCTTTAGCCTCTGTAGATA-CCTCGC
1 CTTTTATTTCTGTAGCCTCTGTAGACACCCT-GT
*
7296668 CTTTTATTGCTGTAGCCTCTGTAGACACCCTGT
1 CTTTTATTTCTGTAGCCTCTGTAGACACCCTGT
* **
7296701 CTTTTATTTCTGTAGCCTCTTTAGACACCCACT
1 CTTTTATTTCTGTAGCCTCTGTAGACACCCTGT
* *
7296734 TTTTTATTTCTGCAGCC
1 CTTTTATTTCTGTAGCC
7296751 GATGTAGTTA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
32 3 0.03
33 94 0.94
34 3 0.03
ACGTcount: A:0.15, C:0.28, G:0.13, T:0.44
Consensus pattern (33 bp):
CTTTTATTTCTGTAGCCTCTGTAGACACCCTGT
Found at i:7296706 original size:66 final size:66
Alignment explanation
Indices: 7296600--7296725 Score: 216
Period size: 66 Copynumber: 1.9 Consensus size: 66
7296590 CAGACAACTT
* * *
7296600 GCCTTTTATTTCTGTAGCCTCTTTAGACACCCTGTCTTTTATTTCTTTAGCCTCTGTAGATACCT
1 GCCTTTTATTGCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTGTAGATACCT
7296665 C
66 C
*
7296666 GCCTTTTATTGCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTTTAGA
1 GCCTTTTATTGCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTGTAGA
7296726 CACCCACTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.15, C:0.26, G:0.14, T:0.44
Consensus pattern (66 bp):
GCCTTTTATTGCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTGTAGATACCT
C
Found at i:7296757 original size:66 final size:66
Alignment explanation
Indices: 7296601--7296750 Score: 212
Period size: 66 Copynumber: 2.3 Consensus size: 66
7296591 AGACAACTTG
* * *
7296601 CCTTTTATTTCTGTAGCCTCTTTAGACACCCTGTCTTTTATTTCTTTAGCCTCTGTAGATACCTC
1 CCTTTTATTTCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTGTAGACACCTC
*
7296666 G
66 A
* *
7296667 CCTTTTATTGCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTTTAGACACC-C
1 CCTTTTATTTCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTGTAGACACCTC
7296731 A
66 A
* *
7296732 CTTTTTTATTTCTGCAGCC
1 C-CTTTTATTTCTGTAGCC
7296751 GATGTAGTTA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
65 2 0.03
66 72 0.97
ACGTcount: A:0.15, C:0.28, G:0.13, T:0.44
Consensus pattern (66 bp):
CCTTTTATTTCTGTAGCCTCTGTAGACACCCTGTCTTTTATTTCTGTAGCCTCTGTAGACACCTC
A
Found at i:7298711 original size:26 final size:28
Alignment explanation
Indices: 7298665--7298729 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 28
7298655 GGTAATACCA
*
7298665 AATATGAAAAA-AAATATATA-TACTA-T
1 AATATGAAAAATAAAGATATATTA-TACT
*
7298691 AATATGAAAAATTAAGA-ATATTATACT
1 AATATGAAAAATAAAGATATATTATACT
7298718 AATAT-AAAAATA
1 AATATGAAAAATA
7298730 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 22 0.67
27 11 0.33
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (28 bp):
AATATGAAAAATAAAGATATATTATACT
Found at i:7298779 original size:18 final size:17
Alignment explanation
Indices: 7298758--7298795 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7298748 AATTATTAAT
*
7298758 ATATTAAAATTTATATAA
1 ATATTAAAATAT-TATAA
7298776 ATA-TAAAATATTATAA
1 ATATTAAAATATTATAA
7298792 ATAT
1 ATAT
7298796 AATTTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
16 8 0.44
17 7 0.39
18 3 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATATTAAAATATTATAA
Found at i:7298837 original size:29 final size:30
Alignment explanation
Indices: 7298769--7298838 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 30
7298759 TATTAAAATT
* *
7298769 TATATAAAT-ATAAAATATTATAAATATAA
1 TATAAAAATAATAAAATATTACAAATATAA
* * * *
7298798 TTTTAATATAATAAAATA-TACGAATATAA
1 TATAAAAATAATAAAATATTACAAATATAA
7298827 TATAAAAATAAT
1 TATAAAAATAAT
7298839 TTATCAAGCA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
29 23 0.74
30 8 0.26
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (30 bp):
TATAAAAATAATAAAATATTACAAATATAA
Found at i:7300024 original size:21 final size:21
Alignment explanation
Indices: 7299984--7300024 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7299974 CATGTATTTT
**
7299984 AATTTAGTTTTTCTTTTTTAC
1 AATTTAGTTTTTCTCATTTAC
7300005 AATTTAGTTTTTCTCATTTA
1 AATTTAGTTTTTCTCATTTA
7300025 AATCCATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.10, G:0.05, T:0.63
Consensus pattern (21 bp):
AATTTAGTTTTTCTCATTTAC
Found at i:7300157 original size:15 final size:15
Alignment explanation
Indices: 7300127--7300169 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
7300117 TTATGTATAA
*
7300127 ATTTTTTATATATATT
1 ATTTTTTAT-TTTATT
7300143 ATTTTTTATTTTATT
1 ATTTTTTATTTTATT
7300158 -TTATTTTATTTT
1 ATT-TTTTATTTT
7300170 TATCTAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 2 0.08
15 14 0.56
16 9 0.36
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
ATTTTTTATTTTATT
Found at i:7300164 original size:17 final size:16
Alignment explanation
Indices: 7300114--7300151 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7300104 ATAATCAACA
* *
7300114 TTTTTATGTATA-AAT
1 TTTTTATATATATTAT
7300129 TTTTTATATATATTAT
1 TTTTTATATATATTAT
7300145 TTTTTAT
1 TTTTTAT
7300152 TTTATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTTATATATATTAT
Found at i:7300627 original size:24 final size:24
Alignment explanation
Indices: 7300607--7300651 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7300597 CTTAAAACAG
7300607 CAGCAGCAAA-AGAAAAGAAAAAA
1 CAGCAGCAAACAGAAAAGAAAAAA
* *
7300630 CGGCAGCAAACAGCAAAGAAAA
1 CAGCAGCAAACAGAAAAGAAAA
7300652 GCAAGCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.62, C:0.18, G:0.20, T:0.00
Consensus pattern (24 bp):
CAGCAGCAAACAGAAAAGAAAAAA
Found at i:7302201 original size:153 final size:151
Alignment explanation
Indices: 7301965--7302378 Score: 487
Period size: 153 Copynumber: 2.7 Consensus size: 151
7301955 ATCATCATTA
** * * * * * * *
7301965 TTTATCTTTTTAAGTTATTTAGGGTTACCGGGATACTTTCATGTTGAAGGTATACCCATAGGGGT
1 TTTA-CTTTTTAAGTCCTTTAGGGCTACCGGGATACTTTTACGTCGAAGGTAT-CCCCTAGAGGC
* * * * * *
7302030 ATTTTTATAA-TTTCTTAGAACCGAGACTTAGGTCATCACCGGGTCTG-CTTCTATGCCGAAGGT
64 A-TTTTATAATTTTTTTAGAACTGAGTCTTAGGTTATCACCGGGTCTGTC-TCCATGCCAAAGGT
*
7302093 GTACATTTAGGATAGGTTCATCCCT
127 ATACATTTAGGATAGGTTCATCCCT
7302118 TTTACCTTTTTAAGTCCTTTAGGGCTACCGGGATACTTTTACGTCGAAGGTATCCCCTAGAGGCA
1 TTTA-CTTTTTAAGTCCTTTAGGGCTACCGGGATACTTTTACGTCGAAGGTATCCCCTAGAGGCA
* *
7302183 TTTTAGTAATTTTTTTAGAACTGAGTCTTAGGTTATCACCGGGTCCGTCTCCATGCTAAAGGTAT
65 TTTTA-TAATTTTTTTAGAACTGAGTCTTAGGTTATCACCGGGTCTGTCTCCATGCCAAAGGTAT
* **
7302248 ACGTTTAGGATAGGTTCATCTTT
129 ACATTTAGGATAGGTTCATCCCT
* *
7302271 TTTA-TTTTTAAGTCCTTTA-GGCTTACTGGGATACTTTTACGTCGAAGGTATCTCCTAGA-GCA
1 TTTACTTTTTAAGTCCTTTAGGGC-TACCGGGATACTTTTACGTCGAAGGTATCCCCTAGAGGCA
* * *
7302333 TTTTAATAATATTTCTAGAACTGAGTCTTAGGTTATCACGGGGTCT
65 TTTT-ATAATTTTTTTAGAACTGAGTCTTAGGTTATCACCGGGTCT
7302379 CTTTTACGCT
Statistics
Matches: 228, Mismatches: 28, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
150 46 0.20
151 55 0.24
152 12 0.05
153 114 0.50
154 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (151 bp):
TTTACTTTTTAAGTCCTTTAGGGCTACCGGGATACTTTTACGTCGAAGGTATCCCCTAGAGGCAT
TTTATAATTTTTTTAGAACTGAGTCTTAGGTTATCACCGGGTCTGTCTCCATGCCAAAGGTATAC
ATTTAGGATAGGTTCATCCCT
Found at i:7305555 original size:87 final size:87
Alignment explanation
Indices: 7305443--7305783 Score: 287
Period size: 88 Copynumber: 3.9 Consensus size: 87
7305433 TACTAAATAT
* *
7305443 TTTAAA-TTTTCTTTTCGTATAATTTTATCTTTAGGAAAACTCCAACCCAACTACTCCAAGGAGA
1 TTTAAATTTTTCCTTT-GTATAATTTTATCTTTAGG-AAACTCCAACCCTACTACTCCAAGGAGA
* *
7305507 TGCTCTAACCCTGA-TATTCAAAAA
64 TACTCTAA-CCTCATTATTCAAAAA
* * * * *
7305531 TTTAAATTTTTCC-TTGTATAATTTTATCCTTAAGGAAACTCTACCCCTATTACTCTAA-GAGAG
1 TTTAAATTTTTCCTTTGTATAATTTTAT-CTTTAGGAAACTCCAACCCTACTACTCCAAGGAGA-
* **
7305594 TACTCTAACCTTATTCTATAAAAAAA
64 TACTCTAACCTCA-T-TATTCAAAAA
* *
7305620 TTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCGAGGGGA
1 -TTTAAATTTTTCCTTTGTATAATTTTATCTTTA-GGAAACTCCAACCCTACTACTCCAAGGAGA
* * *
7305685 TACTCCAATCTCAGTATTCAAAAA
64 TACTCTAACCTCATTATTCAAAAA
* * * * ** * * * * *
7305709 ATTATAATTTTT-CTTTGCATGATCTTATCCTTGGGGAAACTTCATCCCTACAATTCCAAGGGGA
1 TTTA-AATTTTTCCTTTGTATAATTTTAT-CTTTAGGAAACTCCAACCCTACTACTCCAAGGAGA
*
7305773 TATTCTAACCT
64 TACTCTAACCT
7305784 TGTTCTACCA
Statistics
Matches: 203, Mismatches: 38, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
86 8 0.04
87 37 0.18
88 63 0.31
89 31 0.15
90 17 0.08
91 44 0.22
92 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (87 bp):
TTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGAAACTCCAACCCTACTACTCCAAGGAGATA
CTCTAACCTCATTATTCAAAAA
Found at i:7305659 original size:91 final size:89
Alignment explanation
Indices: 7305441--7305858 Score: 287
Period size: 91 Copynumber: 4.7 Consensus size: 89
7305431 TCTACTAAAT
* * *
7305441 ATTTTAAA-TTTTCTTTTCGTATAATTTTATCTTTAGGAAAACTCCAACCCAACTACTCCAAGGA
1 ATTTTAAATTTTTCCTTT-GTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCAAGGA
* **
7305505 GATGCTCTAACCCTGATATTCAAAA
65 GATACTCTAACCCTGATATAAAAAA
* * * * * *
7305530 A-TTTAAATTTTTCC-TTGTATAATTTTATCCTTAAGGAAACTCTACCCCTATTACTCTAA-GAG
1 ATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCAAGGAG
*
7305592 AGTACTCTAA-CCTTATTCTATAAAAAA
66 A-TACTCTAACCCTGA---TATAAAAAA
* *
7305619 ATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCGAGGGG
1 ATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCAAGGAG
* * * *
7305684 ATACTCCAA-TCTCAGTATTCAAAAA
66 ATACTCTAACCCTGA-TA-TAAAAAA
* * * * * * * * * * *
7305709 ATTAT-AATTTTT-CTTTGCATGATCTTATCCTTGGGGAAACTTCATCCCTACAATTCCAAGGGG
1 ATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCAAGGAG
* * * *
7305772 ATATTCTAACCTTGTTCTACCAAAAA
66 ATACTCTAACCCTGATATA--AAAAA
* * ** * * * * * *
7305798 ATTTCAAAGTTTTCCTTCCTGTAATTTTACCTTTA-AGAATACTCTATCCCTACTATTCCAA
1 ATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAA-ACTCCAACCCTACTACTCCAA
7305859 AGAAATATTC
Statistics
Matches: 253, Mismatches: 61, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
86 8 0.03
87 43 0.17
88 57 0.23
89 32 0.13
90 32 0.13
91 78 0.31
92 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (89 bp):
ATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAACTCCAACCCTACTACTCCAAGGAG
ATACTCTAACCCTGATATAAAAAA
Found at i:7305813 original size:179 final size:177
Alignment explanation
Indices: 7305418--7305841 Score: 424
Period size: 179 Copynumber: 2.4 Consensus size: 177
7305408 CTAAGGGGGC
* * * * *
7305418 ACTCCAACCCTATTCTAC-TAAATATTTTAAATTTTCTTTTCGTATAATTTTATCTTTAGGAAAA
1 ACTCTAACCTTATTCTACAAAAAAATTTTAAATTTTCCTTT-GTATAATTTTATCTTTAGGAAAA
* * * *
7305482 CTCCAACCCAACTACTCCAAGGAGATGCTCTAACCCTGATATTCAAAAATTTAAATTTTTCCTTG
65 CTCCAACCCAACTACTCCAAGGAGATACTCCAACCCAGATATTCAAAAAATTAAATTTTTCCTTG
* * ** *
7305547 TATAATTTTATCCTTAAGGAAACTCTACCCCTATTACTCTAAGAGAGT
130 CATAATCTTATCCTTAAGGAAACTCTACCCCTACAACTCCAAGAGAGT
* *
7305595 ACTCTAACCTTATTCTATAAAAAAATTTTAAATTTTTCCTTTGTATAATTTTATCTTTAGGGAAA
1 ACTCTAACCTTATTCTACAAAAAAATTTTAAA-TTTTCCTTTGTATAATTTTATCTTTAGGAAAA
* * * * *
7305660 CTCCAACCCTACTACTCCGAGGGGATACTCCAATCTCAG-TATTCAAAAAATTATAATTTTTCTT
65 CTCCAACCCAACTACTCCAAGGAGATACTCCAA-CCCAGATATTCAAAAAATTA-AATTTTTCCT
* ** * * *
7305724 TGCATGATCTTATCCTTGGGGAAACT-TCATCCCTACAATTCCAAG-GGGAT
128 TGCATAATCTTATCCTTAAGGAAACTCT-ACCCCTACAACTCCAAGAGAG-T
* * * * ** * * * *
7305774 ATTCTAACCTTGTTCTACCAAAAAATTTCAAAGTTTTCCTTCCTGTAATTTTACCTTTAAGAATA
1 ACTCTAACCTTATTCTACAAAAAAATTTTAAA-TTTTCCTTTGTATAATTTTATCTTTAGGAAAA
7305839 CTC
65 CTC
7305842 TATCCCTACT
Statistics
Matches: 201, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
177 15 0.07
178 77 0.38
179 109 0.54
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (177 bp):
ACTCTAACCTTATTCTACAAAAAAATTTTAAATTTTCCTTTGTATAATTTTATCTTTAGGAAAAC
TCCAACCCAACTACTCCAAGGAGATACTCCAACCCAGATATTCAAAAAATTAAATTTTTCCTTGC
ATAATCTTATCCTTAAGGAAACTCTACCCCTACAACTCCAAGAGAGT
Found at i:7311457 original size:129 final size:130
Alignment explanation
Indices: 7311157--7311494 Score: 478
Period size: 128 Copynumber: 2.6 Consensus size: 130
7311147 ATTTTTTAAT
* *
7311157 AAAAATAATATTTAATTAAGTTTAAAAAAATTTATATTAATAAATTAAAATATTAATT-TT-T-T
1 AAAAATAATATTTAATTAAGTTT-AAAAAATTTACATTAACAAATTAAAATATTAATTATTATGT
*** * *
7311219 TAAAATAAAAAAA--TT-TAAATAAAAAATAAAAAGAGTTTATTATTATTATTTTTTAATAAAAT
65 TTTTATAAAAAAATTTTATAAAAAAAAAATAAAAAGAGTTTATTATTATTAATTTTTAATAAAAT
*
7311281 T
130 A
7311282 AAAAATAATATTTAATTAAGTTTAAAAAA-TTACATTAACAAATTAAAATATTAATTATTATGTT
1 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATGTT
*
7311346 TTTATAAAAAAATTTTATAACAAAAAAAATAAAAA-AGTTTTTTATTA-TAATTTTTAATAAAAT
66 TTTATAAAAAAATTTTATAA-AAAAAAAATAAAAAGAGTTTATTATTATTAATTTTTAATAAAAT
7311409 A
130 A
7311410 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATTGT
1 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTA-TGT
*
7311475 TTTTAAAATAAAAAATTTTA
65 TTTT-ATA-AAAAAATTTTA
7311495 AATTAAAAAA
Statistics
Matches: 192, Mismatches: 10, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
123 25 0.13
124 8 0.04
125 24 0.12
126 11 0.06
128 46 0.24
129 45 0.23
130 20 0.10
131 2 0.01
132 11 0.06
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (130 bp):
AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATGTT
TTTATAAAAAAATTTTATAAAAAAAAAATAAAAAGAGTTTATTATTATTAATTTTTAATAAAATA
Found at i:7311502 original size:14 final size:15
Alignment explanation
Indices: 7311475--7311504 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7311465 TTATTATTGT
7311475 TTTTAAAATAAAAAA
1 TTTTAAAATAAAAAA
*
7311490 TTTTAAATTAAAAAA
1 TTTTAAAATAAAAAA
7311505 AAGTTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTTTAAAATAAAAAA
Found at i:7311503 original size:129 final size:129
Alignment explanation
Indices: 7311157--7311521 Score: 497
Period size: 129 Copynumber: 2.9 Consensus size: 129
7311147 ATTTTTTAAT
* *
7311157 AAAAATAATATTTAATTAAGTTTAAAAAAATTTATATTAATAAATT-AAA-A-T-ATTA--ATT-
1 AAAAATAATATTTAATTAAGTTT-AAAAAATTTACATTAACAAATTAAAATATTAATTATTATTG
* * *
7311215 TTTTTAAAATAAAAAAATTTAAATAAAAAATAAAAAGAGTTTATTATTATTATTTTTTAATAAAA
65 TTTTTAAAATAAAAAATTTTAAATAAAAAATAAAAA-AGTTTTTTATTA-TAATTTTTAATAAAA
*
7311280 TT
128 TA
7311282 AAAAATAATATTTAATTAAGTTTAAAAAA-TTACATTAACAAATTAAAATATTAATTATTA-TGT
1 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATTGT
* * *
7311345 TTTTATAA-AAAAATTTTATAACAAAAAAAATAAAAAAGTTTTTTATTATAATTTTTAATAAAAT
66 TTTTAAAATAAAAAATTT-TAA-ATAAAAAATAAAAAAGTTTTTTATTATAATTTTTAATAAAAT
7311409 A
129 A
7311410 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATTGT
1 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATTGT
*
7311475 TTTTAAAATAAAAAATTTTAAAT---TAA-AAAAAAGTTTTTTATTATAAT
66 TTTTAAAATAAAAAATTTTAAATAAAAAATAAAAAAGTTTTTTATTATAAT
7311522 AATATTTTTG
Statistics
Matches: 215, Mismatches: 13, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
123 13 0.06
124 9 0.04
125 45 0.21
126 3 0.01
127 4 0.02
128 52 0.24
129 55 0.26
130 26 0.12
131 8 0.04
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (129 bp):
AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTATTGT
TTTTAAAATAAAAAATTTTAAATAAAAAATAAAAAAGTTTTTTATTATAATTTTTAATAAAATA
Found at i:7311852 original size:38 final size:39
Alignment explanation
Indices: 7311770--7311853 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 39
7311760 ATTAAAATCT
* *
7311770 AAAAGATATTAGTAATGCATAAAATTTTTATTAGATTTT
1 AAAAGATATTAGTAATGCATAAAATTTTTATTAGAATTC
* * *
7311809 GAAAGATATTAGTAAT-TAT-AGATTATTTATTAGAATTC
1 AAAAGATATTAGTAATGCATAAAATT-TTTATTAGAATTC
7311847 AAAAGAT
1 AAAAGAT
7311854 GTGACTAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
37 4 0.11
38 19 0.50
39 15 0.39
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.40
Consensus pattern (39 bp):
AAAAGATATTAGTAATGCATAAAATTTTTATTAGAATTC
Found at i:7312441 original size:95 final size:93
Alignment explanation
Indices: 7312229--7312765 Score: 586
Period size: 95 Copynumber: 5.9 Consensus size: 93
7312219 ATAATGCATG
* ** * *
7312229 GATTGTAAATATCAGATTATAAGGATTAGACTAATGTATAAATTATATCTGAGAATCGGATTCTT
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
* *
7312294 TTTTATAGAAAAAAAAAGAAAAGTTTATT
66 TTTT-TATAAAAAAAAAGAAAAGTTGATT
*
7312323 GATCGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
*
7312388 TTTTTATAAAAAGAAAAAGAAAAGCTGATT
66 TTTTTAT-AAAA-AAAAAGAAAAGTTGATT
* * * *
7312418 GATTGTAAATATCAAACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGAATTCTT
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
***
7312483 TTTTTAT----TTTAA-AAAAGTTGATT
66 TTTTTATAAAAAAAAAGAAAAGTTGATT
* * * * * * **
7312506 GAGTGTAAATATTAGACTGCAA-GAGTTAAACCAATACATGAATTATATCAGAGAATTAGATTC-
1 GATTGTAAATATCAGACTGCAAGGA-TTAGACTAATGCATGAATTATATCTGAGAATCGGATTCT
*
7312569 TTTTTTATAGAAAAAAAGAAAAG-TGATT
65 TTTTTTATAAAAAAAAAGAAAAGTTGATT
* * * * *
7312597 GAGTATAAATATCAGACTGCAAAGATTAGACTAATGTATGAATTATATTTGAGAATCGGA-T-TT
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
*
7312660 TTTTTAT---AGAAAA-AAAAGTTGATT
66 TTTTTATAAAAAAAAAGAAAAGTTGATT
* * * * *
7312684 GATTGTAAATATTATACTACAAGGATTAGACTAATACATGAATTATATCTGAGAATC-GA--ATT
1 GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
*
7312746 TTTTTATAGAAAAAAAGAAA
66 TTTTTATAAAAAAAAAGAAA
7312766 GACTGCAAGA
Statistics
Matches: 373, Mismatches: 54, Indels: 36
0.81 0.12 0.08
Matches are distributed among these distances:
86 16 0.04
87 68 0.18
88 58 0.16
89 7 0.02
90 12 0.03
91 54 0.14
92 7 0.02
93 2 0.01
94 67 0.18
95 82 0.22
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.34
Consensus pattern (93 bp):
GATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTT
TTTTTATAAAAAAAAAGAAAAGTTGATT
Found at i:7312645 original size:179 final size:179
Alignment explanation
Indices: 7312234--7312765 Score: 653
Period size: 179 Copynumber: 2.9 Consensus size: 179
7312224 GCATGGATTG
* ** * *
7312234 TAAATATCAGATTATAAGGATTAGACTAATGTATAAATTATATCTGAGAATCGGATTCTTTTTTA
1 TAAATATCAGACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGGATTCTTTTTT-
* * * *
7312299 TAGAAAAAAAAAGAAAAGTTTATTGATCGTAAATATCAGACTGCAAGGATTAGACTAATGCATGA
65 T----ATAAAAA-AAAAGTTGATTGAT-GTAAATATTAGACTGCAAGGATTAGACTAATACATGA
** * * *
7312364 ATTATATCTGAGAATCGGATTCTTTTTTTATAAAAAGAAAAAGAAAAGCTGATTGATTG
124 ATTATATCTGAGAATTAGATTC-TTTTTTAT-AGAA-AAAAAGAAAAGCTGATTGAGTA
* *
7312423 TAAATATCAAACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGAATTCTTTTTTT
1 TAAATATCAGACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGGATTCTTTTTTT
*** * *
7312488 ATTTTAAAAAAGTTGATTGAGTGTAAATATTAGACTGCAA-GAGTTAAACCAATACATGAATTAT
66 ATAAAAAAAAAGTTGATTGA-TGTAAATATTAGACTGCAAGGA-TTAGACTAATACATGAATTAT
*
7312552 ATCAGAGAATTAGATTCTTTTTTATAGAAAAAAAGAAAAG-TGATTGAGTA
129 ATCTGAGAATTAGATTCTTTTTTATAGAAAAAAAGAAAAGCTGATTGAGTA
*
7312602 TAAATATCAGACTGCAAAGATTAGACTAATGTATGAATTATATTTGAGAATCGGA-T-TTTTTTT
1 TAAATATCAGACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGGATTCTTTTTTT
* *
7312665 ATAGAAAAAAAAGTTGATTGATTGTAAATATTATACTACAAGGATTAGACTAATACATGAATTAT
66 ATA-AAAAAAAAGTTGATTGA-TGTAAATATTAGACTGCAAGGATTAGACTAATACATGAATTAT
* *
7312730 ATCTGAGAA-TCGAAT-TTTTTTATAGAAAAAAAGAAA
129 ATCTGAGAATTAGATTCTTTTTTATAGAAAAAAAGAAA
7312766 GACTGCAAGA
Statistics
Matches: 303, Mismatches: 36, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
176 21 0.07
177 13 0.04
178 60 0.20
179 62 0.20
180 11 0.04
181 3 0.01
182 10 0.03
183 61 0.20
184 4 0.01
188 1 0.00
189 57 0.19
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (179 bp):
TAAATATCAGACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGGATTCTTTTTTT
ATAAAAAAAAAGTTGATTGATGTAAATATTAGACTGCAAGGATTAGACTAATACATGAATTATAT
CTGAGAATTAGATTCTTTTTTATAGAAAAAAAGAAAAGCTGATTGAGTA
Found at i:7312818 original size:68 final size:68
Alignment explanation
Indices: 7312703--7312830 Score: 206
Period size: 68 Copynumber: 1.9 Consensus size: 68
7312693 TATTATACTA
*
7312703 CAAGGATTAGACTAATACATGAATTATATCTGAGAATCGAA-TTTTTTTATAGAAAAAAAGAAAG
1 CAAGAATTAGACTAATACATGAATTATATCTGAGAATCGAATTTTTTTTATA-AAAAAAAGAAAG
7312767 ACTG
65 ACTG
*
7312771 CAAGAATTAGACTAATACATGAATTGTATCTGA-AATCGAATTCTTTTTTATAAAAAAAAG
1 CAAGAATTAGACTAATACATGAATTATATCTGAGAATCGAATT-TTTTTTATAAAAAAAAG
7312831 TTGATTGAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
67 7 0.12
68 40 0.71
69 9 0.16
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.31
Consensus pattern (68 bp):
CAAGAATTAGACTAATACATGAATTATATCTGAGAATCGAATTTTTTTTATAAAAAAAAGAAAGA
CTG
Found at i:7312868 original size:153 final size:154
Alignment explanation
Indices: 7312610--7312918 Score: 437
Period size: 153 Copynumber: 2.0 Consensus size: 154
7312600 TATAAATATC
** * *
7312610 AGACTGCAAAGATTAGACTAATGTATGAATTATATTTGAGAATCGGATTTTTTTTATAGAAAAAA
1 AGACTGCAAAGATTAGACTAATACATGAATTATATCTGAGAATCGAATTTTTTTTATA-AAAAAA
* * *
7312675 AAGTTGATTGATTGTAAATATTATACTACAAGGATTAGACTAATACATGAATTATATCTGAGAAT
65 AAGTTGATTGAGTGTAAATATTAAACTACAAGGATTAGACTAATACATGAATTATATCAGAGAAT
7312740 C-GAATTTTTTTATAGAAAAAAAGAA
130 CAG-ATTTTTTTATAGAAAAAAAGAA
*
7312765 AGACTGC-AAGAATTAGACTAATACATGAATTGTATCTGA-AATCGAATTCTTTTTTAT-AAAAA
1 AGACTGCAAAG-ATTAGACTAATACATGAATTATATCTGAGAATCGAATT-TTTTTTATAAAAAA
* * *
7312827 AAAGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAA
64 AAAGTTGATTGAGTGTAAATATTAAACTACAAGGATTAGACTAATACATGAATTATATCAGAGAA
* *
7312892 TCAGATTTTTTTTTATAAAAAAAGAA
129 TCAGATTTTTTTATAGAAAAAAAGAA
7312918 A
1 A
7312919 AGAAAAGTTG
Statistics
Matches: 138, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
153 87 0.63
154 12 0.09
155 39 0.28
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (154 bp):
AGACTGCAAAGATTAGACTAATACATGAATTATATCTGAGAATCGAATTTTTTTTATAAAAAAAA
AGTTGATTGAGTGTAAATATTAAACTACAAGGATTAGACTAATACATGAATTATATCAGAGAATC
AGATTTTTTTATAGAAAAAAAGAA
Found at i:7313060 original size:334 final size:335
Alignment explanation
Indices: 7312433--7313097 Score: 896
Period size: 334 Copynumber: 2.0 Consensus size: 335
7312423 TAAATATCAA
* ** * **
7312433 ACTGCAAGGATTAGACTAATGTATGAATTATATTTGAGAATCGAATTCTTTTTTTATTTTAAAAA
1 ACTGCAAGAATTAGACTAATACATGAATTATATCTGAGAATCGAATTCTTTTTTTATTAAAAAAA
* *
7312498 AGTTGATTGAGTGTAAATATTAGACTGCAAGAGTTAAACCAATACATGAATTATATCAGAGAATT
66 AGTTGATTGAGTGTAAATATTAAACTGCAAGAGTTAAACCAATACATGAATTATATCAGAGAATC
* * *
7312563 AGATTCTTTTTTATAGAAAAAAAGAAAAGTGATTGAGTATAAATATCAGACTGCAAAGATTAGAC
131 AGATTCTTTTTTATAAAAAAAAAGAAAAGTGATTAAGTATAAATATCAGACTGCAAAGATTAAAC
* * * * *
7312628 TAATGTATGAATTATATTTGAGAATCGGATTTTTTTTATAGAAAAAAAAGTTGATTGATTGTAAA
196 TAATGCATGAATTATATTAGAGAATCAGATTTCTTTTATAGAAAAAAAAGTTGATTAATTGTAAA
* * * *
7312693 TATTATACTACAAGGATTAGACTAATACATGAATTATATCTGAGAATC-GAAT-TTTTTTATAGA
261 TATCAGACTACAAAGATTAGACTAATACATGAATTATATCTAAGAATCAGAATCTTTTTTATA-A
7312756 AAAAAAGAAAG
325 AAAAAAGAAAG
*
7312767 ACTGCAAGAATTAGACTAATACATGAATTGTATCTGA-AATCGAATTC-TTTTTTA-TAAAAAAA
1 ACTGCAAGAATTAGACTAATACATGAATTATATCTGAGAATCGAATTCTTTTTTTATTAAAAAAA
* * * *
7312829 AGTTGATTGAGTGTAAATGTTAAACTGCAAG-GATTAGACTAATGCATGAATTATATCAGAGAAT
66 AGTTGATTGAGTGTAAATATTAAACTGCAAGAG-TTAAACCAATACATGAATTATATCAGAGAAT
* * *
7312893 CAGATTTTTTTTTATAAAAAAAGAAAAGAAAAGTTGATTAAGTATAAATGTCAGACTGCAAGGAT
130 CAGATTCTTTTTTAT--AAAAA-AAAAGAAAAG-TGATTAAGTATAAATATCAGACTGCAAAGAT
*
7312958 TAAACTAATGCATGAATTATATTAGAGAATCATATTCTCTTTTATAG-AAAAAAA-TTGATTAAT
191 TAAACTAATGCATGAATTATATTAGAGAATCAGATT-TCTTTTATAGAAAAAAAAGTTGATTAAT
* ** * * *
7313021 TGTAAATGTCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTT
255 TGTAAATATCAGACTACAAAGATTAGACTAATACATGAATTATATCTAAGAATCAGAATCTTTTT
7313086 TATAAAAAAAAG
320 TATAAAAAAAAG
7313098 TTAATTGATT
Statistics
Matches: 288, Mismatches: 35, Indels: 15
0.85 0.10 0.04
Matches are distributed among these distances:
330 1 0.00
331 76 0.26
332 7 0.02
333 14 0.05
334 95 0.33
335 77 0.27
336 18 0.06
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (335 bp):
ACTGCAAGAATTAGACTAATACATGAATTATATCTGAGAATCGAATTCTTTTTTTATTAAAAAAA
AGTTGATTGAGTGTAAATATTAAACTGCAAGAGTTAAACCAATACATGAATTATATCAGAGAATC
AGATTCTTTTTTATAAAAAAAAAGAAAAGTGATTAAGTATAAATATCAGACTGCAAAGATTAAAC
TAATGCATGAATTATATTAGAGAATCAGATTTCTTTTATAGAAAAAAAAGTTGATTAATTGTAAA
TATCAGACTACAAAGATTAGACTAATACATGAATTATATCTAAGAATCAGAATCTTTTTTATAAA
AAAAAGAAAG
Found at i:7313073 original size:86 final size:86
Alignment explanation
Indices: 7312765--7313183 Score: 429
Period size: 86 Copynumber: 4.8 Consensus size: 86
7312755 AAAAAAAGAA
* * * * * *
7312765 AGACTGCAAGAATTAGACTAATACATGAATTGTATCTGA-AATC-GAATTCTTTTTTATA-AAAA
1 AGACTGTAAGGATTAGACTAATGCATGAATTATATTTAAGAATCAG-ATTCTTTTTTATAGAAAA
* * *
7312827 AAAGTTGATTGAGTGTAAATGTT
65 AAA-TTGATTAATTGTAAATGTC
* * * *
7312850 AAACTGCAAGGATTAGACTAATGCATGAATTATA-TCAGAGAATCAGATTTTTTTTTATAAAAAA
1 AGACTGTAAGGATTAGACTAATGCATGAATTATATTTA-AGAATCAGATTCTTTTTTAT------
* *
7312914 AGAAAAGAAAAGTTGATTAAGTATAAATGTC
59 AG-AAA-AAAA-TTGATTAATTGTAAATGTC
* * * *
7312945 AGACTGCAAGGATTAAACTAATGCATGAATTATA-TTAGAGAATCATATTCTCTTTTATAGAAAA
1 AGACTGTAAGGATTAGACTAATGCATGAATTATATTTA-AGAATCAGATTCTTTTTTATAGAAAA
7313009 AAATTGATTAATTGTAAATGTC
65 AAATTGATTAATTGTAAATGTC
*
7313031 AGACTGTAAAGATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTTTATA-AAAAA
1 AGACTGTAAGGATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTTTATAGAAAAA
* *
7313095 AAGTTAATTGATTGTAAATGTC
66 AA-TTGATTAATTGTAAATGTC
* * *
7313117 A-ACCTGTAAGGATTAGACTAATGCATAAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAA
1 AGA-CTGTAAGGATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTTTATAGAAAA
7313181 AAA
65 AAA
7313184 AGACTGCAAG
Statistics
Matches: 288, Mismatches: 30, Indels: 30
0.83 0.09 0.09
Matches are distributed among these distances:
85 39 0.14
86 152 0.53
87 15 0.05
88 3 0.01
89 2 0.01
92 1 0.00
94 3 0.01
95 73 0.25
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (86 bp):
AGACTGTAAGGATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTTTATAGAAAAA
AATTGATTAATTGTAAATGTC
Found at i:7313075 original size:181 final size:172
Alignment explanation
Indices: 7312765--7313183 Score: 508
Period size: 181 Copynumber: 2.4 Consensus size: 172
7312755 AAAAAAAGAA
* * *
7312765 AGACTGCAAGAATTAGACTAATACATGAATTGTATCTGA-AATCGAATTCTTTTTTATA-AAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATC-AATTCTTTTTTATAGAAAAA
* * *
7312828 AAGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAAT
65 AAGTTGATTAAGTGTAAATGTCAAACTGCAAAGATTAGACTAATGCATGAATTATATCAGAGAAT
*
7312893 CAGATTTTTTTTTATAAAAAAAGAAAAGAAAAGTTGATTAAGTATAAATGTC
130 CAGATTCTTTTTTAT---AAAA-AAAAGAAAA-TTGATT--G--TAAATGTC
* *
7312945 AGACTGCAAGGATTAAACTAATGCATGAATTATAT-TAGAGAATCATATTCTCTTTTATAGAAAA
1 AGACTGCAAGGATTAGACTAATGCATGAATTATATCT-GAGAATCA-ATTCTTTTTTATAGAAAA
* * * *
7313009 AAA-TTGATTAATTGTAAATGTCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTA-AGA
64 AAAGTTGATTAAGTGTAAATGTCAAACTGCAAAGATTAGACTAATGCATGAATTATA-TCAGAGA
**
7313072 ATCAGATTCTTTTTTATAAAAAAAAGTTAATTGATTGTAAATGTC
128 ATCAGATTCTTTTTTATAAAAAAAAGAAAATTGATTGTAAATGTC
* *
7313117 A-ACCTGTAAGGATTAGACTAATGCATAAATTATATCTGAGAATCAGATTCTTTTTTATAGAAAA
1 AGA-CTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCA-ATTCTTTTTTATAGAAAA
7313181 AAA
64 AAA
7313184 AGACTGCAAG
Statistics
Matches: 212, Mismatches: 20, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
171 1 0.00
172 66 0.31
173 1 0.00
174 1 0.00
176 6 0.03
177 7 0.03
178 4 0.02
179 1 0.00
180 34 0.16
181 82 0.39
182 9 0.04
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (172 bp):
AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAATTCTTTTTTATAGAAAAAA
AGTTGATTAAGTGTAAATGTCAAACTGCAAAGATTAGACTAATGCATGAATTATATCAGAGAATC
AGATTCTTTTTTATAAAAAAAAGAAAATTGATTGTAAATGTC
Found at i:7313188 original size:419 final size:414
Alignment explanation
Indices: 7312336--7313511 Score: 1386
Period size: 419 Copynumber: 2.8 Consensus size: 414
7312326 CGTAAATATC
* *
7312336 AGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGGATTCTTTTTTTATAAAAAG
1 AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGA-AATCGAATTC-TTTTTTAT------
* * * * *
7312401 AAAAAGAAAAGCTGATTGATTGTAAATATCAAACTGCAAGGATTAGACTAATGTATGAATTATAT
58 -AAAAGAAAAGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATAT
* *** * * *
7312466 TTGAGAATC-GAATTCTTTTTTTAT---TTTAA-AAAAGTTGATTGAGTGTAAATATTAGACTGC
122 TAGAGAATCAG-ATT-TTTTTTTATAAAAAAAAGAAAAGTTGATTGAGTATAAATGTCAGACTGC
* * * *
7312526 AA-GAGTTAAACCAATACATGAATTATATCAGAGAATTAGATTCTTTTTTATAGAAAAAAAGAAA
185 AAGGA-TTAAACTAATGCATGAATTATATCAGAGAATCATATTC-TTTTTATAG----AAA-AAA
* * * * * *
7312590 AGTGATTGAGTATAAATATCAGACTGCAAAGATTAGACTAATGTATGAATTATATTTGAGAATCG
243 ATTGATTGATTATAAATGTCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTGAGAATCA
* *
7312655 GATTTTTTTTATAGAAAAAAAAGTTGATTGATTGTAAATATTATACTACAAGGATTAGACTAATA
308 GATTTTTTTTAT--AAAAAAAAGTTAATTGATTGTAAATATCATACTACAAGGATTAGACTAATA
*
7312720 CATGAATTATATCTGAGAATCGAATTTTTTTATAGAAAAAAAGAA
371 CATAAATTATATCTGAGAATCGAATTTTTTTATAG-AAAAAAGAA
* *
7312765 AGACTGCAAGAATTAGACTAATACATGAATTGTATCTGAAATCGAATTCTTTTTTATAAAA-AAA
1 AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGAAATCGAATTCTTTTTTATAAAAGAAA
*
7312829 AGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAATC
66 AGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATATTAGAGAATC
*
7312894 AGATTTTTTTTTATAAAAAAAGAAAAGAAAAGTTGATTAAGTATAAATGTCAGACTGCAAGGATT
131 AGATTTTTTTTTAT---AAAA-AAAAGAAAAGTTGATTGAGTATAAATGTCAGACTGCAAGGATT
* * *
7312959 AAACTAATGCATGAATTATATTAGAGAATCATATTCTCTTTTATAGAAAAAAATTGATTAATTGT
192 AAACTAATGCATGAATTATATCAGAGAATCATATTCT-TTTTATAGAAAAAAATTGATTGATTAT
*
7313024 AAATGTCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTTTAT
256 AAATGTCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTGAGAATCAGATT-TTTTTTAT
* ** *
7313089 AAAAAAAAGTTAATTGATTGTAAATGTCA-ACCTGTAAGGATTAGACTAATGCATAAATTATATC
320 AAAAAAAAGTTAATTGATTGTAAATATCATA-CTACAAGGATTAGACTAATACATAAATTATATC
*
7313153 TGAGAATCAGATTCTTTTTTATAG-AAAAA-AA
384 TGAGAATC-GAAT-TTTTTTATAGAAAAAAGAA
* * * *
7313184 AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGAAATTGGATTTTTTTTTGTAAAAAAAT
1 AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGAAA-TCGAATTCTTTTT-T-ATAAAA-
* * * ** * *
7313249 GAAAAGTTGATTGAGTGTAAATGCTAGACTGTAAAAATTAGACTAATGCATAAATTATATTAAAG
62 GAAAAGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATATTAGAG
* * * * *
7313314 AATCATATTCTTTTTTATAGAAAAAAAGAAAAGTTGATTGTGTATAAATGTCGGATTGCAAGGAT
127 AATCAGATTTTTTTTTATA-AAAAAAAGAAAAGTTGATTGAGTATAAATGTCAGACTGCAAGGAT
* *
7313379 TAGACTAATGCATGAATTATATCAGAGAATCATATT-TTTTTATAGAAAAAAGTTGATTGATTAT
191 TAAACTAATGCATGAATTATATCAGAGAATCATATTCTTTTTATAGAAAAAAATTGATTGATTAT
* * * *
7313443 AAATGTTAGACTGTAAAGATTAGACTAATGCATAAATTATATTTGATAATCA-AATTTTTTTATA
256 AAATGTCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTTTTTTTATA
*
7313507 GAAAA
321 AAAAA
7313512 GCAAAAAAGT
Statistics
Matches: 655, Mismatches: 71, Indels: 54
0.84 0.09 0.07
Matches are distributed among these distances:
417 13 0.02
418 11 0.02
419 178 0.27
420 84 0.13
421 140 0.21
422 29 0.04
424 72 0.11
425 3 0.00
426 70 0.11
427 10 0.02
428 9 0.01
429 36 0.05
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (414 bp):
AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGAAATCGAATTCTTTTTTATAAAAGAAA
AGTTGATTGAGTGTAAATGTTAAACTGCAAGGATTAGACTAATGCATGAATTATATTAGAGAATC
AGATTTTTTTTTATAAAAAAAAGAAAAGTTGATTGAGTATAAATGTCAGACTGCAAGGATTAAAC
TAATGCATGAATTATATCAGAGAATCATATTCTTTTTATAGAAAAAAATTGATTGATTATAAATG
TCAGACTGTAAAGATTAGACTAATGCATGAATTATATTTGAGAATCAGATTTTTTTTATAAAAAA
AAGTTAATTGATTGTAAATATCATACTACAAGGATTAGACTAATACATAAATTATATCTGAGAAT
CGAATTTTTTTATAGAAAAAAGAA
Found at i:7313316 original size:157 final size:153
Alignment explanation
Indices: 7313042--7313340 Score: 390
Period size: 157 Copynumber: 1.9 Consensus size: 153
7313032 GACTGTAAAG
* * *
7313042 ATTAGACTAATGCATGAATTATATTTAAGAATCAGATTCTTTTTTATAAAAAAAAGTTAATTGAT
1 ATTAGACTAATGCATGAATTATATCTAAGAATCAGATTCTTTTTTAAAAAAAAAAGTTAATTGAG
** *
7313107 TGTAAATGTCAACCTGTAAGGATTAGACTAATGCATAAATTATATCTGAGAATCAGATTCTTTTT
66 TGTAAATGTCAACCTGTAAAAATTAGACTAATGCATAAATTATATCTAAGAATCAGATTCTTTTT
7313172 TATAGAAAAAAAAGACTGCAAGA
131 TATAGAAAAAAAAGACTGCAAGA
* ** * *
7313195 ATTAGACTAATGCATGAATTATATCTGA-AATTGGATTTTTTTTTGTAAAAAAATGAAAAGTTGA
1 ATTAGACTAATGCATGAATTATATCTAAGAATCAGA-TTCTTTTT-T-AAAAAA--AAAAGTTAA
*
7313259 TTGAGTGTAAATG-CTAGA-CTGTAAAAATTAGACTAATGCATAAATTATAT-TAAAGAATCATA
61 TTGAGTGTAAATGTC-A-ACCTGTAAAAATTAGACTAATGCATAAATTATATCT-AAGAATCAGA
7313321 TTCTTTTTTATAGAAAAAAA
123 TTCTTTTTTATAGAAAAAAA
7313341 GAAAAGTTGA
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
152 5 0.04
153 33 0.26
154 1 0.01
155 5 0.04
156 2 0.02
157 79 0.63
158 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.36
Consensus pattern (153 bp):
ATTAGACTAATGCATGAATTATATCTAAGAATCAGATTCTTTTTTAAAAAAAAAAGTTAATTGAG
TGTAAATGTCAACCTGTAAAAATTAGACTAATGCATAAATTATATCTAAGAATCAGATTCTTTTT
TATAGAAAAAAAAGACTGCAAGA
Found at i:7313357 original size:90 final size:88
Alignment explanation
Indices: 7313184--7313527 Score: 285
Period size: 92 Copynumber: 3.9 Consensus size: 88
7313174 TAGAAAAAAA
* * * * * *
7313184 AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGAA-ATTGGAT-TTTTTTTTGTA-AAAA
1 AGACTGCAAAAATTAGACTAATGCATAAATTATAT-TAAAGAAT-CATATTTTTTTTATAGAAAA
*
7313246 AATGAAAAGTTGATTGAGTGTAAATGCT
64 AAAGAAAAGTTGATT--GTGTAAATG-T
*
7313274 AGACTGTAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTCTTTTTTATAGAAAAA
1 AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATT-TTTTTTATAGAAAAA
7313339 AAGAAAAGTTGATTGTGTATAAATGT
65 AAGAAAAGTTGATTGTG--TAAATGT
* * ** * * *
7313365 CGGATTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAATCATA-TTTTTTTATAG-AAAA
1 -AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTTTTTTTATAGAAAAA
*** *
7313428 AAGTTGA-TTGA-T-TATAAATGTT
65 AAGAAAAGTTGATTGTGTAAATG-T
* * ** * * *
7313450 AGACTGTAAAGATTAGACTAATGCATAAATTATATTTGATAATCA-AATTTTTTTATAGAAAAGC
1 AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTTTTTTTATAGAAAA-A
7313514 AA-AAAAGTTGATTG
65 AAGAAAAGTTGATTG
7313528 ATTTACAGAA
Statistics
Matches: 208, Mismatches: 32, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
83 1 0.00
84 54 0.26
85 5 0.02
86 7 0.03
87 2 0.01
88 4 0.02
89 13 0.06
90 49 0.24
91 10 0.05
92 63 0.30
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (88 bp):
AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTTTTTTTATAGAAAAAA
AGAAAAGTTGATTGTGTAAATGT
Found at i:7313381 original size:92 final size:90
Alignment explanation
Indices: 7313184--7313527 Score: 307
Period size: 84 Copynumber: 3.9 Consensus size: 90
7313174 TAGAAAAAAA
* * * * * *
7313184 AGACTGCAAGAATTAGACTAATGCATGAATTATATCTGAA-ATTGGAT-TTTTTTTTGTA-AAAA
1 AGACTGCAAAAATTAGACTAATGCATAAATTATAT-TAAAGAAT-CATATTTTTTTTATAGAAAA
* * *
7313246 AATGAAAAGTTGATTGAGTGTAAATG-C
64 AA-AAAAAGTTGATTGTGTATAAATGTC
*
7313273 TAGACTGTAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTCTTTTTTATAGAAAA
1 -AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATT-TTTTTTATAGAAAA
7313338 AAAGAAAAGTTGATTGTGTATAAATGTC
64 AAA-AAAAGTTGATTGTGTATAAATGTC
* * ** * * *
7313366 GGATTGCAAGGATTAGACTAATGCATGAATTATATCAGAGAATCATA-TTTTTTTATAG-----A
1 AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTTTTTTTATAGAAAAAA
*
7313425 AAAAAGTTGATTGAT-TATAAATGTT
66 AAAAAGTTGATTG-TGTATAAATGTC
* * ** * * *
7313450 AGACTGTAAAGATTAGACTAATGCATAAATTATATTTGATAATCA-AATTTTTTTATAGAAAAGC
1 AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTTTTTTTATAGAAAA-A
7313514 AAAAAAGTTGATTG
65 AAAAAAGTTGATTG
7313528 ATTTACAGAA
Statistics
Matches: 213, Mismatches: 27, Indels: 28
0.79 0.10 0.10
Matches are distributed among these distances:
83 1 0.00
84 69 0.32
85 3 0.01
89 5 0.02
90 60 0.28
91 9 0.04
92 65 0.31
93 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (90 bp):
AGACTGCAAAAATTAGACTAATGCATAAATTATATTAAAGAATCATATTTTTTTTATAGAAAAAA
AAAAAGTTGATTGTGTATAAATGTC
Done.