Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1963
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 463875
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 1 of 4
Found at i:915 original size:19 final size:21
Alignment explanation
Indices: 865--916 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
855 TTCAATAATT
*
865 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
*
886 TATATCGATACA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
*
905 TGTATCAATACA
1 TGTATCGATACA
917 GCGTATCGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 12 0.44
20 4 0.15
21 11 0.41
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:995 original size:13 final size:13
Alignment explanation
Indices: 977--1011 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
967 GTAGAAGTGT
977 TCGATACATTGTA
1 TCGATACATTGTA
990 TCGATACATTGTA
1 TCGATACATTGTA
1003 TCGATACAT
1 TCGATACAT
1012 CGATCTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (13 bp):
TCGATACATTGTA
Found at i:3547 original size:104 final size:103
Alignment explanation
Indices: 3367--3605 Score: 322
Period size: 104 Copynumber: 2.3 Consensus size: 103
3357 TTAAGTTTCT
* * **
3367 CAATTTTTCATAATC-AGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTGATTGTTCCACA
1 CAATTTTTCATAATCGA-GGATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTGTTCCACA
* *
3431 ATCGGGGATACTCCAACTCCGATTTTAATTTTCGAAACAC
65 ATCGGGGATACTCCAACTCCGATTTT-ATTTCCAAAACAC
* * **
3471 CAATTTTCCACAATCGAGGATACTCCAACCCCAGTTTTATTT-TCAAAACACCAATT-TTCCTTT
1 CAATTTTTCATAATCGAGGATACTCCAACCCCAGTTTTATTTCT-AAAACACCAATTGTTCC-AC
3534 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
64 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
*
3574 CAATTTTTCATAATCGGGGATACTCCAACCCC
1 CAATTTTTCATAATCGAGGATACTCCAACCCC
3606 GTTAATCATC
Statistics
Matches: 119, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
103 45 0.38
104 73 0.61
105 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (103 bp):
CAATTTTTCATAATCGAGGATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTGTTCCACAA
TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
Found at i:3658 original size:28 final size:29
Alignment explanation
Indices: 3589--3660 Score: 96
Period size: 27 Copynumber: 2.6 Consensus size: 29
3579 TTTCATAATC
3589 GGGGATACTCCAACCCCGTTAATCATCGA
1 GGGGATACTCCAACCCCGTTAATCATCGA
* **
3618 --GGATACTCCAACCCTGTT-ATTTTCGA
1 GGGGATACTCCAACCCCGTTAATCATCGA
3644 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
3661 CGATTTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 6 0.16
27 17 0.46
28 14 0.38
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (29 bp):
GGGGATACTCCAACCCCGTTAATCATCGA
Found at i:3712 original size:52 final size:51
Alignment explanation
Indices: 3367--3713 Score: 292
Period size: 52 Copynumber: 6.6 Consensus size: 51
3357 TTAAGTTTCT
* * *
3367 CAATTTTTCATAATCAGGGATACTCTAACCCCGGTTTTATTTCTAAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
** * * * *
3418 TGATTGTTCCACAATCGGGGATACTCCAACTCCGATTTTAATTT-TCGAAACAC
1 CAATT-TTTCATAATCGGGGATACTCCAACCCCGATTTT-ATTTCT-AAAACAC
* * *
3471 CAATTTTCCACAATCGAGGATACTCCAACCCC-AGTTTTATTT-TCAAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGA-TTTTATTTCT-AAAACAC
* * * *
3522 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
1 CAATTTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* * * * *
3574 CAATTTTTCATAATCGGGGATACTCCAACCCCG--TTAATCATCGAGGATACTC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTAT-TTCTA--AAACAC
* * ** *
3626 CAACCCTGTT-ATTTTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAACAT
1 CAA--TTTTTCATAATC--GGGGATACTCCAA-CCCCGATTTTATTTCTAAAACAC
3681 CAATTTTTCATAATCGGGGATACTCCAACCCCG
1 CAATTTTTCATAATCGGGGATACTCCAACCCCG
3714 TTATTTTCGA
Statistics
Matches: 237, Mismatches: 41, Indels: 36
0.75 0.13 0.11
Matches are distributed among these distances:
49 4 0.02
50 3 0.01
51 52 0.22
52 119 0.50
53 21 0.09
54 7 0.03
55 19 0.08
56 5 0.02
57 3 0.01
58 4 0.02
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (51 bp):
CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
Found at i:3787 original size:79 final size:80
Alignment explanation
Indices: 3613--3788 Score: 266
Period size: 79 Copynumber: 2.2 Consensus size: 80
3603 CCCGTTAATC
* *
3613 ATCGAGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAA
1 ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAACCCCGATTTTATTTCTAAAA
* *
3678 CATCAATTTTTCATA
66 CACCAATTTCTCATA
*
3693 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACT-CAAACCCCGATTTTATTTCTAAAA
1 ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAACCCCGATTTTATTTCTAAAA
*
3757 CACCAA-TTCTCCTCA
66 CACCAATTTCTCAT-A
*
3772 ATCGAGGATATTCCAAC
1 ATCGAGGATACTCCAAC
3789 TCCGATTTTA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
78 5 0.06
79 44 0.51
80 38 0.44
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (80 bp):
ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAACCCCGATTTTATTTCTAAAA
CACCAATTTCTCATA
Found at i:3798 original size:51 final size:51
Alignment explanation
Indices: 3726--3839 Score: 149
Period size: 51 Copynumber: 2.2 Consensus size: 51
3716 ATTTTCGAGG
* * *
3726 GGATACTCAAACCCCGATTTTA-TTTCTAAAACACCAATTCTCCTCAATCGA
1 GGATACTCCAACTCCGATTTTATTTTC-AAAACACCAATTCTCCACAATCGA
* * * *
3777 GGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTTCACAATCGA
1 GGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTCTCCACAATCGA
3828 GGATACTCCAAC
1 GGATACTCCAAC
3840 CTCGTTATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
51 50 0.93
52 4 0.07
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (51 bp):
GGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTCTCCACAATCGA
Found at i:3859 original size:28 final size:28
Alignment explanation
Indices: 3823--3877 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
3813 ATTTTTCACA
*
3823 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
*
3851 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGAGGATACTCCAACCCCGTTATTT
3878 TCGAGGGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATTTC
Found at i:3885 original size:28 final size:27
Alignment explanation
Indices: 3828--3899 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
3818 TCACAATCGA
*
3828 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTATTTCA-CGG
3856 GGATACTCCAACCCCGTTATTTTCGA-GG
1 GGATACTCCAACCCCGTTA-TTTC-ACGG
* *
3884 GGATGCTCCAATCCCG
1 GGATACTCCAACCCCG
3900 ATTTTATTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (27 bp):
GGATACTCCAACCCCGTTATTTCACGG
Found at i:3905 original size:237 final size:239
Alignment explanation
Indices: 3488--3978 Score: 731
Period size: 237 Copynumber: 2.1 Consensus size: 239
3478 CCACAATCGA
* * *
3488 GGATACTCCAACCCC-AGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC
1 GGATACTCCAACCCCGAGTTTTATTTTCAAAACACCAATTCTCCTTCAATCGAGGATACTCCAAC
* *
3552 TCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTAATCATCG
66 TCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCGTTAATCATCG
* *
3617 AGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAACATC
131 AGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGATTTTATTTCCAAAACATC
* * *
3682 AATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGG
196 AATTTTTCACAACCGGGGATACTCCAACCCCGTTATTTTCAAGG
* *
3726 GGATACTCAAACCCCGA-TTTTA-TTTCTAAAACACCAATTCTCC-TCAATCGAGGATATTCCAA
1 GGATACTCCAACCCCGAGTTTTATTTTC-AAAACACCAATTCTCCTTCAATCGAGGATACTCCAA
* * * *
3788 CTCCGATTTTATTTTCAAAACACTAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTCAT
65 CTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCGTTA-ATCAT
* * * *
3853 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAA-TCCCGATTTTATTTCCAAATCA
129 CGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGATTTTATTTCCAAAACA
* *
3917 TCGATTTTTCACAACCGGGGATACTCCAACCCCGTTATTTTTAAGG
194 TCAATTTTTCACAACCGGGGATACTCCAACCCCGTTATTTTCAAGG
3963 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
3979 TTATTATCTC
Statistics
Matches: 227, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
237 149 0.66
238 77 0.34
239 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (239 bp):
GGATACTCCAACCCCGAGTTTTATTTTCAAAACACCAATTCTCCTTCAATCGAGGATACTCCAAC
TCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCGTTAATCATCG
AGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGATTTTATTTCCAAAACATC
AATTTTTCACAACCGGGGATACTCCAACCCCGTTATTTTCAAGG
Found at i:3908 original size:107 final size:107
Alignment explanation
Indices: 3790--3983 Score: 284
Period size: 107 Copynumber: 1.8 Consensus size: 107
3780 TATTCCAACT
* * *
3790 CCGATTTTATTTTCAAAACA-CTAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTCAT-
1 CCGATTTTATTTCCAAAACATC-AATTTTTCACAACCGAGGATACTCCAACCCCGTTATTT-ATA
*
3853 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAATC
64 AGGGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAATC
* * * *
3897 CCGATTTTATTTCCAAATCATCGATTTTTCACAACCGGGGATACTCCAACCCCGTTATTTTTAAG
1 CCGATTTTATTTCCAAAACATCAATTTTTCACAACCGAGGATACTCCAACCCCGTTATTTATAAG
3962 GGGATACTCCAACCCCGTTATT
66 GGGATACTCCAACCCCGTTATT
3984 ATCTCCAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
106 1 0.01
107 75 0.97
108 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (107 bp):
CCGATTTTATTTCCAAAACATCAATTTTTCACAACCGAGGATACTCCAACCCCGTTATTTATAAG
GGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAATC
Found at i:16285 original size:1 final size:1
Alignment explanation
Indices: 16279--16365 Score: 75
Period size: 1 Copynumber: 87.0 Consensus size: 1
16269 CTTCTCTTCT
* * ** * * * *
16279 AAAAAAAAAACAAAAACAAAAGCAAAAAAACAAAAAAAAACAAAAAACAAAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
16344 AAAAAACAAAACAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAA
16366 GAGAGAAAAG
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.87, C:0.10, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:16299 original size:12 final size:12
Alignment explanation
Indices: 16279--16358 Score: 85
Period size: 12 Copynumber: 6.8 Consensus size: 12
16269 CTTCTCTTCT
16279 AAAAA-AAAAAC
1 AAAAACAAAAAC
*
16290 AAAAACAAAAGC
1 AAAAACAAAAAC
*
16302 AAAAA-AACAAAA
1 AAAAACAA-AAAC
16314 AAAAACAAAAAAC
1 AAAAAC-AAAAAC
*
16327 AAAAAAAAAAAC
1 AAAAACAAAAAC
*
16339 AAAAAAAAAAAC
1 AAAAACAAAAAC
16351 -AAAACAAA
1 AAAAACAAA
16359 GAAAAAAGAG
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
11 14 0.24
12 35 0.59
13 8 0.14
14 2 0.03
ACGTcount: A:0.88, C:0.11, G:0.01, T:0.00
Consensus pattern (12 bp):
AAAAACAAAAAC
Found at i:16305 original size:17 final size:17
Alignment explanation
Indices: 16279--16358 Score: 83
Period size: 19 Copynumber: 4.5 Consensus size: 17
16269 CTTCTCTTCT
16279 AAAAA-AAAAACAAAAA
1 AAAAACAAAAACAAAAA
* *
16295 CAAAAGCAAAAAAACAAAA
1 -AAAAACAAAAACA-AAAA
16314 AAAAACAAAAAACAAAAAA
1 AAAAAC-AAAAAC-AAAAA
16333 AAAAACAAAAA-AAAAA
1 AAAAACAAAAACAAAAA
16349 ACAAAACAAA
1 A-AAAACAAA
16359 GAAAAAAGAG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
16 6 0.11
17 12 0.22
18 16 0.30
19 19 0.35
20 1 0.02
ACGTcount: A:0.88, C:0.11, G:0.01, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAACAAAAA
Found at i:16316 original size:30 final size:29
Alignment explanation
Indices: 16280--16365 Score: 122
Period size: 29 Copynumber: 2.9 Consensus size: 29
16270 TTCTCTTCTA
16280 AAAAAAAAACAAAAACAAAAGCAAAAAAAC
1 AAAAAAAAACAAAAACAAAAG-AAAAAAAC
16310 AAAAAAAAACAAAAAACAAAA-AAAAAAAC
1 AAAAAAAAAC-AAAAACAAAAGAAAAAAAC
*
16339 AAAAAAAAAAACAAAAC-AAAGAAAAAA
1 AAAAAAAAACA-AAAACAAAAGAAAAAA
16366 GAGAGAAAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
28 4 0.08
29 28 0.54
30 10 0.19
31 10 0.19
ACGTcount: A:0.87, C:0.10, G:0.02, T:0.00
Consensus pattern (29 bp):
AAAAAAAAACAAAAACAAAAGAAAAAAAC
Found at i:16374 original size:29 final size:28
Alignment explanation
Indices: 16280--16365 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 28
16270 TTCTCTTCTA
*
16280 AAAAAAAAACAAAAACAAAAGCAAAAAAAC
1 AAAAAAAAACAAAAAC-AAAG-AAAAAAAA
16310 AAAAAAAAACAAAAAACAAA-AAAAAAAA
1 AAAAAAAAAC-AAAAACAAAGAAAAAAAA
*
16338 CAAAAAAAAAAACAAAACAAAGAAAAAA
1 -AAAAAAAAACA-AAAACAAAGAAAAAA
16366 GAGAGAAAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
28 8 0.16
29 17 0.34
30 19 0.38
31 6 0.12
ACGTcount: A:0.87, C:0.10, G:0.02, T:0.00
Consensus pattern (28 bp):
AAAAAAAAACAAAAACAAAGAAAAAAAA
Found at i:17421 original size:55 final size:55
Alignment explanation
Indices: 17337--17757 Score: 517
Period size: 55 Copynumber: 7.4 Consensus size: 55
17327 CTCCTTTCAC
17337 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT
1 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT
*
17392 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-
1 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT
17446 TTTTCTAGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGCAT
1 TTTTC-AGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCAT
* *
17502 TTTCCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAT
1 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT
* * * * *
17557 TTTCCAGTCCTCAAAGAGCATGATGCTTTTTCTTTTCAAAGCACACATAAGTTGGTGGCAT
1 TTTTCAGTCCTCAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCAT
* * *
17618 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAA-TTGGTGACAC
1 TTTTCAGTCCTCAAAGAGCAGGACG-C-----C-TTTCAAAGCCCACA-CAAGTTGGTGGCAT
* * * *
17680 CTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACGAGTTGGTAGCACT
1 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-T
*
17736 TTTT-AGTCCTCAAAGAGTAGGA
1 TTTTCAGTCCTCAAAGAGCAGGA
17758 TGCACTTTAT
Statistics
Matches: 329, Mismatches: 23, Indels: 28
0.87 0.06 0.07
Matches are distributed among these distances:
54 8 0.02
55 208 0.63
56 10 0.03
60 1 0.00
61 48 0.15
62 52 0.16
63 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (55 bp):
TTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT
Found at i:18644 original size:19 final size:18
Alignment explanation
Indices: 18620--18711 Score: 87
Period size: 19 Copynumber: 5.5 Consensus size: 18
18610 CCGTAAATGC
18620 ATCGATACATAAGTGTTGT
1 ATCGATACATAAGT-TTGT
18639 ATCGATAC--AA---TGT
1 ATCGATACATAAGTTTGT
18652 ATCGATACATAAGTTTTGT
1 ATCGATACATAAG-TTTGT
18671 ATCGATAC--AA---TGT
1 ATCGATACATAAGTTTGT
18684 ATCGATACATAAGTTTTGT
1 ATCGATACATAAG-TTTGT
18703 ATCGATACA
1 ATCGATACA
18712 ATGTATCGCT
Statistics
Matches: 61, Mismatches: 0, Indels: 24
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.36
15 4 0.07
17 4 0.07
19 31 0.51
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (18 bp):
ATCGATACATAAGTTTGT
Found at i:18654 original size:13 final size:13
Alignment explanation
Indices: 18636--18692 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
18626 ACATAAGTGT
18636 TGTATCGATACAA
1 TGTATCGATACAA
18649 TGTATCGATACATAA
1 TGTATCGATAC--AA
18664 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
18681 TGTATCGATACA
1 TGTATCGATACA
18693 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:18661 original size:32 final size:32
Alignment explanation
Indices: 18615--18719 Score: 192
Period size: 32 Copynumber: 3.3 Consensus size: 32
18605 ACAAACCGTA
* *
18615 AATGCATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTTTTGTATCGATAC
18647 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTTTTGTATCGATAC
18679 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTTTTGTATCGATAC
18711 AATGTATCG
1 AATGTATCG
18720 CTACGAAGCT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
AATGTATCGATACATAAGTTTTGTATCGATAC
Found at i:18766 original size:21 final size:21
Alignment explanation
Indices: 18736--18777 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
18726 AGCTACTGCC
18736 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
*
18757 AAGGAGATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
18778 GTATCAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:21212 original size:51 final size:51
Alignment explanation
Indices: 21155--21393 Score: 309
Period size: 51 Copynumber: 4.6 Consensus size: 51
21145 TTAAGTTTCT
* *
21155 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
1 CAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
** * * * *
21206 TGATTTTCCACAATCGGGGATACTCCAACTCCAATTTTATTTTTGAAACAC
1 CAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
21257 CAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTT-TCAAAACAC
1 CAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACAC
** * * * *
21308 CAATTTTCCTTTAATCGAGGATACTCCAACTCTGATTTTATTTCCAAAAACAC
1 CAATTTTCC-ACAATCGGGGATACTCCAACCCCGATTTTATTT-CTAAAACAC
*
21361 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTCCACAATCGGGGATACTCCAACCCCG
21394 TTATTTTCTA
Statistics
Matches: 159, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
50 1 0.01
51 96 0.60
52 47 0.30
53 15 0.09
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (51 bp):
CAATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
Found at i:21449 original size:80 final size:80
Alignment explanation
Indices: 21326--21548 Score: 308
Period size: 80 Copynumber: 2.8 Consensus size: 80
21316 CTTTAATCGA
* * *
21326 GGATACTCCAACTCT-GATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGATACTCCAACCCTCGGTTTTATTT-CTAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
21390 CCCGTTATTTTCT-AGG
65 CCCGTTATTTT-TGAGG
* * *
21406 GGATACTCCAACCCTCGGTTTTATTTTTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
1 GGATACTCCAACCCTCGGTTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
21471 CCGTTATTTTTGAGG
66 CCGTTATTTTTGAGG
* * * * *
21486 GGATACTCAAACCC-CGGTTTTATTTCTAAAACACCAATTCTCCACAATCGAGGATATTCCAAC
1 GGATACTCCAACCCTCGGTTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
21549 TCCGATTTTA
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 43 0.34
80 75 0.59
81 9 0.07
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (80 bp):
GGATACTCCAACCCTCGGTTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
CCGTTATTTTTGAGG
Found at i:21568 original size:51 final size:51
Alignment explanation
Indices: 21486--21599 Score: 156
Period size: 51 Copynumber: 2.2 Consensus size: 51
21476 ATTTTTGAGG
* * * *
21486 GGATACTCAAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGA
1 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTCTCCACAATCGA
* * * *
21537 GGATATTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGA
1 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTCTCCACAATCGA
21588 GGATACTCCAAC
1 GGATACTCCAAC
21600 CTCGTTATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (51 bp):
GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTCTCCACAATCGA
Found at i:21619 original size:28 final size:28
Alignment explanation
Indices: 21583--21637 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
21573 ATTTTTCACA
*
21583 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
*
21611 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGAGGATACTCCAACCCCGTTATTT
21638 TCGAGGGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATTTC
Found at i:21645 original size:28 final size:27
Alignment explanation
Indices: 21588--21659 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
21578 TCACAATCGA
*
21588 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTATTTCA-CGG
21616 GGATACTCCAACCCCGTTATTTTCGA-GG
1 GGATACTCCAACCCCGTTA-TTTC-ACGG
* *
21644 GGATGCTCCAATCCCG
1 GGATACTCCAACCCCG
21660 ATTTTATTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (27 bp):
GGATACTCCAACCCCGTTATTTCACGG
Found at i:21729 original size:107 final size:107
Alignment explanation
Indices: 21550--21743 Score: 293
Period size: 107 Copynumber: 1.8 Consensus size: 107
21540 TATTCCAACT
* * *
21550 CCGATTTTATTTCCAAAACACTAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCG
1 CCGATTTTATTTCCAAAACACTAATTTTTCACAACCGAGGATACTCCAACCCCGTTATTTCATAG
21615 GGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAATC
66 GGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAATC
* * * *
21657 CCGATTTTATTTCCAAATCA-TCGATTTTTCACAACCGGGGATACTCCAACCCCGTTATTT-TTA
1 CCGATTTTATTTCCAAAACACT-AATTTTTCACAACCGAGGATACTCCAACCCCGTTATTTCAT-
21720 AGGGGATACTCCAACCCCGTTATT
64 AGGGGATACTCCAACCCCGTTATT
21744 ATCTCCAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
106 2 0.03
107 76 0.97
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (107 bp):
CCGATTTTATTTCCAAAACACTAATTTTTCACAACCGAGGATACTCCAACCCCGTTATTTCATAG
GGGATACTCCAACCCCGTTATTTTCGAGGGGATGCTCCAATC
Found at i:23669 original size:19 final size:19
Alignment explanation
Indices: 23646--23685 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
23636 AAAAAGATAA
23646 ATTTTTA-ATTTAAAATTG
1 ATTTTTATATTTAAAATTG
*
23664 ATTTTTATTTTTAAAATTG
1 ATTTTTATATTTAAAATTG
23683 ATT
1 ATT
23686 AAGCCTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTTTTATATTTAAAATTG
Found at i:27838 original size:20 final size:20
Alignment explanation
Indices: 27813--27863 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
27803 AAATTTCCAG
27813 ATGTATCGATACAAAGA-TCA
1 ATGTATCGATACAAAGAGT-A
**
27833 ATGTATCGATACATTGAGTA
1 ATGTATCGATACAAAGAGTA
27853 ATGTATCGATA
1 ATGTATCGATA
27864 AATTTCCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAAAGAGTA
Found at i:28678 original size:100 final size:97
Alignment explanation
Indices: 28564--29161 Score: 510
Period size: 87 Copynumber: 6.3 Consensus size: 97
28554 CGAAGAATGA
* * **
28564 CAATGTGCTGATTCATGGCCAGCGACT-TTAGACTTGAAGAAGAATGCCAATGTGCTGAGACAAG
1 CAATATGCTGATTCAAGGCCAGCGA-TATTAGACTTGAAGAAGAATGCCAATGTGCTGATTCAAG
* *
28628 GCCAACGACATTGGGCTTTAAAGATGACGAAGGCGC
65 GCCAACGACATTGGAC-TTAAAGAT-A-GAAGGTGC
* * *
28664 CAATATGCTGATTCAAGGCCAGCGATCTTAGACTT-AAAAATGAAGGTGCCAATGTACTGATTCA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTGAAGAA-GAA--TGCCAATGTGCTGATTCA
**
28728 AGGCCAGGGACATTGGACTTAAAGAT-GAAGGTGC
63 AGGCCAACGACATTGGACTTAAAGATAGAAGGTGC
* * * * * *
28762 CACTATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATGAAGAGGTGCCGATGTGCTGATTC
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTT---GAAGAAGA-ATGCCAATGTGCTGATTC
* *
28827 AAGGCCAACGACATCGGTCTTAAAGATA-AAGGTGC
62 AAGGCCAACGACATTGGACTTAAAGATAGAAGGTGC
* * **
28862 CAATATGCTGATTCAAGGCCAGCGATACTAGGCTT------G--TGTTAATGTGCTGATTCAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTGAAGAAGAATGCCAATGTGCTGATTCAAGG
* * * *
28919 CCAGCGACATTGGTCTT--AGAGACAAGGTGC
66 CCAACGACATTGGACTTAAAGATAGAAGGTGC
* * *
28949 CAATATGCTGATTCAAGGCCAGTGATATTGGGCTT--------ATGCCAATGTGCTGATTCAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTGAAGAAGAATGCCAATGTGCTGATTCAAGG
* * *
29006 CCAGCGACATTGGTCTTAAAG--ACAAGGTGC
66 CCAACGACATTGGACTTAAAGATAGAAGGTGC
* * * * *
29036 CAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGATACCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTAGACTTGAAGAAG-A-ATGCCAATGTGCTGATTCAA
* * * *
29101 GGCCAGCGACATTGGTCTT--AGAGACAAGGTGC
64 GGCCAACGACATTGGACTTAAAGATAGAAGGTGC
*
29133 CAATATGCTGATTCAAAGCCAGCGATATT
1 CAATATGCTGATTCAAGGCCAGCGATATT
29162 GGGCTTAGAA
Statistics
Matches: 429, Mismatches: 43, Indels: 55
0.81 0.08 0.10
Matches are distributed among these distances:
86 4 0.01
87 117 0.27
88 33 0.08
89 2 0.00
91 1 0.00
95 2 0.00
97 75 0.17
98 38 0.09
99 5 0.01
100 109 0.25
101 10 0.02
102 33 0.08
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (97 bp):
CAATATGCTGATTCAAGGCCAGCGATATTAGACTTGAAGAAGAATGCCAATGTGCTGATTCAAGG
CCAACGACATTGGACTTAAAGATAGAAGGTGC
Found at i:28724 original size:49 final size:50
Alignment explanation
Indices: 28564--29168 Score: 469
Period size: 49 Copynumber: 12.7 Consensus size: 50
28554 CGAAGAATGA
* * * * * *
28564 CAATGTGCTGATTCATGGCCAGCGA-CTTTAGACTTGAAGAAGAA--TGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* ** * * *
28611 CAATGTGCTGAGACAAGGCCAACGA-CATTGGGCTTTAAAGATGACGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGAC-TTAAAGAT---GAAGGTGC
* *
28664 CAATATGCTGATTCAAGGCCAGCGATC-TTAGACTTAAAAATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* * *
28713 CAATGTACTGATTCAAGGCCAGGGA-CATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* *
28762 CACTATGCTGATTCAAGGCTAGCGAT-ATTGGACTTAAAGATGAAGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATG-A-AGGTGC
* * * * * *
28813 CGATGTGCTGATTCAAGGCCAACGA-CATCGGTCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
*
28862 CAATATGCTGATTCAAGGCCAGCGAT-ACTAGG-CTT---G-T----GT--
1 CAATATGCTGATTCAAGGCCAGCGATCA-TTGGACTTAAAGATGAAGGTGC
* * * * *
28901 TAATGTGCTGATTCAAGGCCAGCGA-CATTGGTCTTAGAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* *
28949 CAATATGCTGATTCAAGGCCAGTGAT-ATTGGGC-T-----T--A--TGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* * *
28988 CAATGTGCTGATTCAAGGCCAGCGA-CATTGGTCTTAAAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* * *
29036 CAATATGCTGATTCAAGGCCAGCGAT-ATTGGTCTTAAAGATGAAGATAC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* * * *
29085 CAATGTGCTGATTCAAGGCCAGCGA-CATTGGTCTTAGAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
* *
29133 CAATATGCTGATTCAAAGCCAGCGAT-ATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTA
29169 GAAAAAGATG
Statistics
Matches: 453, Mismatches: 62, Indels: 85
0.75 0.10 0.14
Matches are distributed among these distances:
38 3 0.01
39 59 0.13
40 1 0.00
41 3 0.01
42 1 0.00
45 1 0.00
46 4 0.01
47 27 0.06
48 113 0.25
49 159 0.35
50 5 0.01
51 42 0.09
52 7 0.02
53 27 0.06
54 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (50 bp):
CAATATGCTGATTCAAGGCCAGCGATCATTGGACTTAAAGATGAAGGTGC
Found at i:28979 original size:48 final size:48
Alignment explanation
Indices: 28906--29170 Score: 332
Period size: 48 Copynumber: 5.7 Consensus size: 48
28896 TGTGTTAATG
28906 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
* * * *
28954 TGCTGATTCAAGGCCAGTGATATTGGGCTT-------A--TGCCAATG
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
*
28993 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
* * * * * *
29041 TGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAAGATACCAATG
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CAAGGTGCCAATA
29090 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
* * *
29138 TGCTGATTCAAAGCCAGCGATATTGGGCTTAGA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAGA
29171 AAAAGATGCC
Statistics
Matches: 185, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.18
41 1 0.01
46 1 0.01
48 107 0.58
49 42 0.23
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (48 bp):
TGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATA
Found at i:29000 original size:39 final size:39
Alignment explanation
Indices: 28946--29023 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
28936 AGAGACAAGG
* *
28946 TGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
* *
28985 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
29024 AAGACAAGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
Found at i:29154 original size:97 final size:97
Alignment explanation
Indices: 28987--29168 Score: 337
Period size: 97 Copynumber: 1.9 Consensus size: 97
28977 TGGGCTTATG
28987 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
* *
29052 GGCCAGCGATATTGGTCTTAAAGATGAAGATA
66 AGCCAGCGATATTGGGCTTAAAGATGAAGATA
*
29084 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTCAA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
29149 AGCCAGCGATATTGGGCTTA
66 AGCCAGCGATATTGGGCTTA
29169 GAAAAAGATG
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 82 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (97 bp):
CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
AGCCAGCGATATTGGGCTTAAAGATGAAGATA
Found at i:29249 original size:29 final size:29
Alignment explanation
Indices: 29190--29316 Score: 159
Period size: 30 Copynumber: 4.3 Consensus size: 29
29180 CACCAACTTA
**
29190 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
1 TGTGGGCTTTTGAAAGGG-TGCCACTGACT
* *
29219 TGTTGTGCTTTTG-AAGGTTGCCACTGACT
1 TG-TGGGCTTTTGAAAGGGTGCCACTGACT
*
29248 TGTGGGCTTTTGAAAAGGGTGTCACTGACT
1 TGTGGGCTTTTG-AAAGGGTGCCACTGACT
29278 TGTGGGCTTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTG-AAAGGGTGCCACTGACT
29308 TGTGGGCTT
1 TGTGGGCTT
29317 AAAAGGAGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
28 11 0.13
29 14 0.16
30 61 0.71
ACGTcount: A:0.17, C:0.16, G:0.32, T:0.35
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGGTGCCACTGACT
Found at i:29344 original size:33 final size:30
Alignment explanation
Indices: 29296--30091 Score: 411
Period size: 34 Copynumber: 25.7 Consensus size: 30
29286 TTTGAAAAGG
* * *
29296 GTGCCACTGACTTGTGGGCTTAAAAGGAGAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-G-GAAA
*
29328 GATGCCACGGAGTTGTGGACTGAAAAGG---
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAA
*
29356 GTGCCACGGAGTTGTGGATTTAAAAGG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAA
*
29383 GTGCCACTGAGTTGTGGACTTAAAAGG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAA
* *
29410 GTGCCACTGAGTTGTGGACTTAAAGGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGG---AA-A
*
29444 GTGCCACGAAGTTGTGTG-CTTAAAAGG---
1 GTGCCACGGAGTTGTG-GACTTAAAAGGAAA
* ** *
29471 GTGCCATGGAGTCATGGACTTAAAAAGAAAA
1 GTGCCACGGAGTTGTGGACTT-AAAAGGAAA
29502 GGTGCCACGGAGTTGTGGACTTAAAAGG---
1 -GTGCCACGGAGTTGTGGACTTAAAAGGAAA
* * *
29530 GTGCCACAGAGTTGTGGGCTTTAAAGG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAA
* * * *
29557 GTGCCACGAAGTCGTAGACTTAAAAAGAAAA
1 GTGCCACGGAGTTGTGGACTT-AAAAGGAAA
*
29588 GGTGCCACGGAGTTGTGAACTTAAAAGGAACAA
1 -GTGCCACGGAGTTGTGGACTTAAAAGG-A-AA
29621 GGTGCCACGGAGTTGTGGACTTAAAAGGGAAAA
1 -GTGCCACGGAGTTGTGGACTTAAAA-GG-AAA
29654 GATGCCACGGAGTTGTGGACTTAAAAGG---
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAA
* *
29682 GTGCCACAGAGTTGTGGGCTTTAAAAAGAGAAA
1 GTGCCACGGAGTTGTGGAC-TT-AAAAG-GAAA
29715 GGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGA
1 -GTGCCACGGAGTTGTGGACTTAAAA-GG--AA-A
*
29750 GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGG--AAA
*
29782 GAATGCCACGGAGTTGTGGGCTTAAAAGG--A
1 G--TGCCACGGAGTTGTGGACTTAAAAGGAAA
*
29812 -TGCCACGGAGTTGTGGACTTTGGAAAGAGAAAA
1 GTGCCACGGAGTTGTGGAC-TT--AAA-AGGAAA
* * **
29845 GATGCCACTGAGTCGTGGACTTTGAAGAAAAAAA
1 G-TGCCACGGAGTTGTGGAC-TT-AA-AAGGAAA
* * **
29879 GATGCCACTGAGTCGTGGACTTTGAAGAAAAAAA
1 G-TGCCACGGAGTTGTGGAC-TT-AA-AAGGAAA
* * **
29913 GATGCCACTGAGTCGTGGACTTTGAAGAAAAAAA
1 G-TGCCACGGAGTTGTGGAC-TT-AA-AAGGAAA
* * * ** *
29947 GATGCCACTGAGTCGTGAACTTTGAAGAAAA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAA
* * ** *
29978 GATGCCACTGAGTCGTGGACTTTGAA-GAGA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAA
* ** *
30008 GATGCCACTGAGTTGTGGACTTTGAAGAAAA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAA
* * ** *
30039 GATGCCACTGAGTCGTGGACTTTGAAGAAAA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAA
* *
30070 GATGCCACTGAGTCGTGGACTT
1 G-TGCCACGGAGTTGTGGACTT
30092 TGAGAAGAGA
Statistics
Matches: 659, Mismatches: 58, Indels: 95
0.81 0.07 0.12
Matches are distributed among these distances:
26 1 0.00
27 163 0.25
28 15 0.02
29 5 0.01
30 32 0.05
31 98 0.15
32 48 0.07
33 85 0.13
34 190 0.29
35 22 0.03
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (30 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGAAA
Found at i:29360 original size:27 final size:27
Alignment explanation
Indices: 29330--29831 Score: 349
Period size: 27 Copynumber: 16.7 Consensus size: 27
29320 AGGAGAAAGA
*
29330 TGCCACGGAGTTGTGGACTGAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
29357 TGCCACGGAGTTGTGGATTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
29384 TGCCACTGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
29411 TGCCACTGAGTTGTGGACTTAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTT-------AAAAGGG
*
29445 TGCCACGAAGTTGTGTG-CTTAAAAGGG
1 TGCCACGGAGTTGTG-GACTTAAAAGGG
* **
29472 TGCCATGGAGTCATGGACTTAAAAAGAAAAGG
1 TGCCACGGAGTTGTGGACTT-AAAAG----GG
29504 TGCCACGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* * *
29531 TGCCACAGAGTTGTGGGCTTTAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* * *
29558 TGCCACGAAGTCGTAGACTTAAAAAGAAAAGG
1 TGCCACGGAGTTGTGGACTT-AAAAG----GG
*
29590 TGCCACGGAGTTGTGAACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
29623 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAG
1 TGCCACGGAGTTGTGGACTTAAAA-GG----G
29655 ATGCCACGGAGTTGTGGACTTAAAAGGG
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
* *
29683 TGCCACAGAGTTGTGGGCTTTAAAAAGAGAAAGG
1 TGCCACGGAGTTGTGGAC-TT--AAA-AG---GG
29717 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAA--G----G-G
*
29751 TGCCACGGAGTTGTGGGCTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
* *
29783 AATGCCACGGAGTTGTGGGCTTAAAAGGA
1 --TGCCACGGAGTTGTGGACTTAAAAGGG
29812 TGCCACGGAGTTGTGGACTT
1 TGCCACGGAGTTGTGGACTT
29832 TGGAAAGAGA
Statistics
Matches: 395, Mismatches: 37, Indels: 86
0.76 0.07 0.17
Matches are distributed among these distances:
26 1 0.00
27 166 0.42
28 14 0.04
30 4 0.01
31 14 0.04
32 45 0.11
33 60 0.15
34 90 0.23
35 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:29472 original size:61 final size:58
Alignment explanation
Indices: 29290--29776 Score: 317
Period size: 61 Copynumber: 8.1 Consensus size: 58
29280 TGGGCTTTTG
* * * * *
29290 AAAAGGGTGCCACTGACTTGTGGGCTTAAAAGGAGAAAGATGCCACGGAGTTGTGGACTG
1 AAAAGGGTGCCACTGAGTTGTGGACTTAAAGGGA-AAAGGTGCCAC-GAGTTGTGGACTT
* * *
29350 AAAAGGGTGCCACGGAGTTGTGGA-TT-TA---AAAGGGTGCCACTGAGTTGTGGACTT
1 AAAAGGGTGCCACTGAGTTGTGGACTTAAAGGGAAAAGGTGCCAC-GAGTTGTGGACTT
29404 AAAAGGGTGCCACTGAGTTGTGGACTTAAAGGGAAAAAGAGTGCCACGAAGTTGTGTG-CTT
1 AAAAGGGTGCCACTGAGTTGTGGACTTAAAGGG-AAAAG-GTGCCACG-AGTTGTG-GACTT
** **
29465 AAAAGGGTGCCA-TGGAGTCATGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACT-GAGTTGTGGACTTAAAGGGAAAAGGTGCCAC-GAGTTGTGGACTT
* * * *
29524 AAAAGGGTGCCACAGAGTTGTGGGCTTTAAA--G----GGTGCCACGAAGTCGTAGACTT
1 AAAAGGGTGCCACTGAGTTGTGGAC-TTAAAGGGAAAAGGTGCCACG-AGTTGTGGACTT
* * *
29578 AAAAAGAAAAGGTGCCACGGAGTTGTGAACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTT
1 -AAAAG----GGTGCCACTGAGTTGTGGACTTAAAGGGAA-AAGGTGCCAC-GAGTTGTGGACTT
* * *
29643 AAAAGGGAAAAGATGCCACGGAGTTGTGGACTT--A---AAAGGGTGCCACAGAGTTGTGGGCTT
1 AAAA-GG----G-TGCCACTGAGTTGTGGACTTAAAGGGAAAAGGTGCCAC-GAGTTGTGGAC-T
29703 T
58 T
* *
29704 AAAAAGAGAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAGTGCCACGGAGTTGTGGGC
1 --AAA-AG---GGTGCCACTGAGTTGTGGACTT-AAAGGGAAAAG-GTGCCAC-GAGTTGTGGAC
29769 TT
57 TT
29771 AAAAGG
1 AAAAGG
29777 AAAAAGAATG
Statistics
Matches: 347, Mismatches: 32, Indels: 95
0.73 0.07 0.20
Matches are distributed among these distances:
53 1 0.00
54 62 0.18
55 8 0.02
56 1 0.00
58 8 0.02
59 56 0.16
60 58 0.17
61 70 0.20
62 2 0.01
63 4 0.01
64 9 0.03
65 23 0.07
66 21 0.06
67 6 0.02
68 18 0.05
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.21
Consensus pattern (58 bp):
AAAAGGGTGCCACTGAGTTGTGGACTTAAAGGGAAAAGGTGCCACGAGTTGTGGACTT
Found at i:29557 original size:86 final size:86
Alignment explanation
Indices: 29438--29615 Score: 268
Period size: 86 Copynumber: 2.1 Consensus size: 86
29428 CTTAAAGGGA
* * * * *
29438 AAAAGAGTGCCACGAAGTTGTGTGCTTAAAAGGGTGCCATGGAGTCATGGACTTAAAAAGAAAAG
1 AAAAGGGTGCCACGAAGTTGTGGGCTTAAAAGGGTGCCACGAAGTCATAGACTTAAAAAGAAAAG
*
29503 GTGCCACGGAGTTGTGGACTT
66 GTGCCACGGAGTTGTGAACTT
* *
29524 AAAAGGGTGCCAC-AGAGTTGTGGGCTTTAAAGGGTGCCACGAAGTCGTAGACTTAAAAAGAAAA
1 AAAAGGGTGCCACGA-AGTTGTGGGCTTAAAAGGGTGCCACGAAGTCATAGACTTAAAAAGAAAA
29588 GGTGCCACGGAGTTGTGAACTT
65 GGTGCCACGGAGTTGTGAACTT
29610 AAAAGG
1 AAAAGG
29616 AACAAGGTGC
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
85 1 0.01
86 82 0.99
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (86 bp):
AAAAGGGTGCCACGAAGTTGTGGGCTTAAAAGGGTGCCACGAAGTCATAGACTTAAAAAGAAAAG
GTGCCACGGAGTTGTGAACTT
Found at i:29763 original size:68 final size:66
Alignment explanation
Indices: 29576--30101 Score: 334
Period size: 61 Copynumber: 8.2 Consensus size: 66
29566 AGTCGTAGAC
* *
29576 TTAAAAAGA-AAAGGTGCCACGGAGTTGTGAACTTAAAAGGAACAAG-GTGCCACGGAGTTGTGG
1 TTAAAAAGAGAAAGATGCCACGGAGTTGTGGACTTAAAA-GAA-AAGAGTGCCACGGAGTTGTGG
*
29639 AC-
64 GCT
* *
29641 TT-AAAAGGGAAAAGATGCCACGGAGTTGTGGACTTAAAAG----G-GTGCCACAGAGTTGTGGG
1 TTAAAAAGAG-AAAGATGCCACGGAGTTGTGGACTTAAAAGAAAAGAGTGCCACGGAGTTGTGGG
29700 CT
65 CT
*
29702 TTAAAAAGAGAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAGTGCCACGGAGTTGTGG
1 TTAAAAAGAGAAAGATGCCACGGAGTTGTGGACTTAAAA--GAAAAGAGTGCCACGGAGTTGTGG
29767 GC-
64 GCT
* * * *
29769 TTAAAAGGAAAAAGAATGCCACGGAGTTGTGGGCTTAAAAG----GA-TGCCACGGAGTTGTGGA
1 TTAAAAAGAGAAAG-ATGCCACGGAGTTGTGGACTTAAAAGAAAAGAGTGCCACGGAGTTGTGGG
29829 CT
65 CT
** * * * * *
29831 TTGGAAAGAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAAGA-TGCCACTGAGTCGT
1 TTAAAAAGAG-AAAGATGCCACGGAGTTGTGGAC-TT-AA-AAGAAAAGAGTGCCACGGAGTTGT
*
29895 GGACT
62 GGGCT
* * * * *
29900 TTGAAGAAA-A-AAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAAGA-TGCCACTGAGTCG
1 TT-AA-AAAGAGAAAGATGCCACGGAGTTGTGGAC-TT-AA-AAGAAAAGAGTGCCACGGAGTTG
**
29962 TGAACT
61 TGGGCT
* * * ** * * *
29968 TT--GAAGA-AAAGATGCCACTGAGTCGTGGACTTTGAAG-AGAGA-TGCCACTGAGTTGTGGAC
1 TTAAAAAGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGAAAAGAGTGCCACGGAGTTGTGGGC
30028 T
66 T
* * * ** * * *
30029 TT--GAAGA-AAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGAC
1 TTAAAAAGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGAAAAGAGTGCCACGGAGTTGTGGGC
30090 T
66 T
* *
30091 TTGAGAAGAGA
1 TTAAAAAGAGA
30102 GATTTGAAGA
Statistics
Matches: 398, Mismatches: 35, Indels: 56
0.81 0.07 0.11
Matches are distributed among these distances:
60 18 0.05
61 105 0.26
62 56 0.14
63 7 0.02
64 16 0.04
65 30 0.08
66 28 0.07
67 13 0.03
68 100 0.25
69 21 0.05
70 1 0.00
71 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.21
Consensus pattern (66 bp):
TTAAAAAGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGAAAAGAGTGCCACGGAGTTGTGGGC
T
Found at i:43652 original size:20 final size:20
Alignment explanation
Indices: 43627--43741 Score: 162
Period size: 20 Copynumber: 5.8 Consensus size: 20
43617 TTTTCACAAT
43627 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
43647 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
43667 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
* *
43687 ATGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
43707 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
43727 ATGTATCGATACATT
1 TTGTATCGATACATT
43742 CAGGCATTTT
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
19 2 0.02
20 82 0.96
21 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:43692 original size:40 final size:40
Alignment explanation
Indices: 43627--43741 Score: 205
Period size: 40 Copynumber: 2.9 Consensus size: 40
43617 TTTTCACAAT
*
43627 TTGTATCGATACATTGTT-CATTGTATCGATACATTGCTCA
1 TTGTATCGATACATT-TTACAATGTATCGATACATTGCTCA
43667 TTGTATCGATACATTTTACAATGTATCGATACATTGCTCA
1 TTGTATCGATACATTTTACAATGTATCGATACATTGCTCA
43707 TTGTATCGATACATTTTACAATGTATCGATACATT
1 TTGTATCGATACATTTTACAATGTATCGATACATT
43742 CAGGCATTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
39 2 0.03
40 71 0.97
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.42
Consensus pattern (40 bp):
TTGTATCGATACATTTTACAATGTATCGATACATTGCTCA
Found at i:43721 original size:60 final size:60
Alignment explanation
Indices: 43628--43741 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 60
43618 TTTCACAATT
* *
43628 TGTATCGATACATTGTTCATTGTATCGATACATTGCT-CATTGTATCGATACATTTTACAA
1 TGTATCGATACATTGCTCATTGTATCGATACATT-CTACAATGTATCGATACATTTTACAA
*
43688 TGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATACATT
1 TGTATCGATACATTGCTCATTGTATCGATACATTCTACAATGTATCGATACATT
43742 CAGGCATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
59 1 0.02
60 49 0.98
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (60 bp):
TGTATCGATACATTGCTCATTGTATCGATACATTCTACAATGTATCGATACATTTTACAA
Found at i:46135 original size:51 final size:52
Alignment explanation
Indices: 46042--46163 Score: 142
Period size: 51 Copynumber: 2.4 Consensus size: 52
46032 ATTTTTCATC
* * ** * **
46042 TCGGGGATACTCCAA-TCCCGGTTTTATTTCTAAAACGTCAATTTTTCTTAA
1 TCGGGGATACTCCAACTCCCGATTTTATTTCCAAAACACCAATTTCTCACAA
46093 TCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCAATTTCTCACAA
1 TCGGGGATACTCCAACTCCCGATTTTATTTCCAAAACACCAATTTCTCACAA
* *
46144 TTGGGGATACTTCAAC-CCCG
1 TCGGGGATACTCCAACTCCCG
46164 TTATTTTCGC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
51 59 0.98
52 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (52 bp):
TCGGGGATACTCCAACTCCCGATTTTATTTCCAAAACACCAATTTCTCACAA
Found at i:46185 original size:79 final size:79
Alignment explanation
Indices: 46094--46319 Score: 305
Period size: 79 Copynumber: 2.9 Consensus size: 79
46084 TTTTCTTAAT
* * * *
46094 CGGGGATACTCCAACTC-CGATTTTATTTCCAAAACACCAATTTCTCACAATTGGGGATACTTCA
1 CGGGGATACTCCAACTCTCGATTTTATTTCCAAAATACCAATTT-TCATAATCGGGGATACTCCA
46158 ACCCCGTTATTTTCG
65 ACCCCGTTATTTTCG
* * *
46173 CGGGGATACTCCAA-TCTCGATTTTATTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCA
1 CGGGGATACTCCAACTCTCGATTTTATTTCCAAAATACCAATTTTC-ATAATCGGGGATACTCCA
*
46237 ACCCTGTTATTTTCG
65 ACCCCGTTATTTTCG
* * *
46252 AGGGGATACTCCAAC-CTTGATTTTATTTCTAAAATACCAATTTTCCATAATCGGGGATACTCCA
1 CGGGGATACTCCAACTCTCGATTTTATTTCCAAAATACCAATTTT-CATAATCGGGGATACTCCA
46316 ACCC
65 ACCC
46320 TGATTTTATT
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
78 4 0.03
79 124 0.96
80 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
CGGGGATACTCCAACTCTCGATTTTATTTCCAAAATACCAATTTTCATAATCGGGGATACTCCAA
CCCCGTTATTTTCG
Found at i:46316 original size:51 final size:50
Alignment explanation
Indices: 46253--46420 Score: 232
Period size: 51 Copynumber: 3.3 Consensus size: 50
46243 TTATTTTCGA
* *
46253 GGGGATACTCCAACCTTGATTTTATTTCTAAAATACCAATTTTCCATAATC
1 GGGGATACTCCAACCTTGATTTTATTT-TAAAACACCAATTTTCCACAATC
*
46304 GGGGATACTCCAACCCTGATTTTATTTTTAAAACACCAATTTTCCACAATC
1 GGGGATACTCCAACCTTGATTTTA-TTTTAAAACACCAATTTTCCACAATC
* *
46355 GGGGATACTCTAA-CTCCGATTTTATTTTCAAAACACCAA-TTTCTCACAATC
1 GGGGATACTCCAACCT-TGATTTTATTTT-AAAACACCAATTTTC-CACAATC
46406 GGGGATACTCCAACC
1 GGGGATACTCCAACC
46421 CCGTTATTTT
Statistics
Matches: 105, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
50 9 0.09
51 92 0.88
52 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAACCTTGATTTTATTTTAAAACACCAATTTTCCACAATC
Found at i:46416 original size:181 final size:181
Alignment explanation
Indices: 46173--46502 Score: 495
Period size: 181 Copynumber: 1.8 Consensus size: 181
46163 GTTATTTTCG
* * *
46173 CGGGGATACTCCAATCTCGATTTTATTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCAA
1 CGGGGATACTCCAATCTCGATTTTATTTTCAAAACACCAATTTTCTACAATCAGGGATACTCCAA
* *** *
46238 CCCTGTTATTTTCGAGGGGATACTCCAACCTTGATTTTA-TTTCTAAAATACCAATTTTCCATAA
66 CCCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTC-AAAACACCAATTTTCCATAA
*
46302 TCGGGGATACTCCAACCCTGATTTTATTTTTAAAACACCAATTTTCCACAAT
130 TCAGGGATACTCCAACCCTGATTTTATTTTTAAAACACCAATTTTCCACAAT
* *
46354 CGGGGATACTCTAA-CTCCGATTTTATTTTCAAAACACCAA-TTTCTCACAATCGGGGATACTCC
1 CGGGGATACTCCAATCT-CGATTTTATTTTCAAAACACCAATTTTCT-ACAATCAGGGATACTCC
* *
46417 AACCCCGTTATTTTCGCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATA
64 AACCCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCCATA
46482 ATCAGGGATACTCCAACCCTG
129 ATCAGGGATACTCCAACCCTG
46503 TTATTTCCGT
Statistics
Matches: 133, Mismatches: 13, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
180 7 0.05
181 122 0.92
182 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (181 bp):
CGGGGATACTCCAATCTCGATTTTATTTTCAAAACACCAATTTTCTACAATCAGGGATACTCCAA
CCCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCCATAAT
CAGGGATACTCCAACCCTGATTTTATTTTTAAAACACCAATTTTCCACAAT
Found at i:46457 original size:79 final size:78
Alignment explanation
Indices: 46354--46583 Score: 307
Period size: 79 Copynumber: 2.9 Consensus size: 78
46344 TTTCCACAAT
* * *
46354 CGGGGATACTCTAACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATCGGGGATACTCCAA
1 CGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTT-TCATAATCGGGGATACTCCAA
*
46419 CCCCGTTATTTTCG
65 CCCCGTTATTTCCG
* *
46433 CGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAA
1 CGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTC-ATAATCGGGGATACTCCAA
*
46498 CCCTGTTATTTCCG
65 CCCCGTTATTTCCG
* * * * * * *
46512 TGGGGATACTCCAACCTCGATTTTATTTCCAAAACACCGATTTTTTATAATCGGGGATACTCTAG
1 CGGGGATACTCCAACCCCGATTTTATTTTCAAAACACC-AATTTTCATAATCGGGGATACTCCAA
46577 CCCCGTT
65 CCCCGTT
46584 GTTATCTCCA
Statistics
Matches: 132, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
78 2 0.02
79 125 0.95
80 5 0.04
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (78 bp):
CGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCATAATCGGGGATACTCCAAC
CCCGTTATTTCCG
Found at i:46503 original size:260 final size:260
Alignment explanation
Indices: 46042--46573 Score: 832
Period size: 260 Copynumber: 2.0 Consensus size: 260
46032 ATTTTTCATC
* ** * **
46042 TCGGGGATACTCCAATCCCGGTTTTATTTCTAAAACGTCAATTTTTCTTAATCGGGGATACTCCA
1 TCGGGGATACTCCAATCCCGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCA
* *
46107 ACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATTGGGGATACTTCAACCCCGTTATTTTC
66 ACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTC
* * * * *
46172 GCGGGGATACTCCAATCTCGATTTTATTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCA
131 GCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCA
* * * *
46237 ACCCTGTTATTTTCGAGGGGATACTCCAACCTTGATTTTATTTCTAAAATACCAATTTTCCATAA
196 ACCCTGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTTCCATAA
* *
46302 TCGGGGATACTCCAA-CCCTGATTTTATTTTTAAAACACCAATTTTCCACAATCGGGGATACTCT
1 TCGGGGATACTCCAATCCC-GATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCC
*
46366 AACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTT
65 AACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTT
46431 CGCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCC
130 CGCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCC
* * **
46496 AACCCTGTTATTTCCGTGGGGATACTCCAACCTCGATTTTATTTCCAAAACACCGATTTTTTATA
195 AACCCTGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTTCCATA
46561 A
260 A
46562 TCGGGGATACTC
1 TCGGGGATACTC
46574 TAGCCCCGTT
Statistics
Matches: 247, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
259 3 0.01
260 244 0.99
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (260 bp):
TCGGGGATACTCCAATCCCGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCA
ACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTC
GCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCA
ACCCTGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTTCCATAA
Found at i:48948 original size:14 final size:14
Alignment explanation
Indices: 48929--48959 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
48919 TATATTATGT
*
48929 AAAATTAAATCATA
1 AAAATTAAACCATA
48943 AAAATTAAACCATA
1 AAAATTAAACCATA
48957 AAA
1 AAA
48960 GTAGAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATTAAACCATA
Found at i:50399 original size:18 final size:18
Alignment explanation
Indices: 50376--50412 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50366 CAAAAATATC
50376 ATTTTGTGATCTTTTAAA
1 ATTTTGTGATCTTTTAAA
50394 ATTTTGTGATCTTTTAAA
1 ATTTTGTGATCTTTTAAA
50412 A
1 A
50413 ATAACTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (18 bp):
ATTTTGTGATCTTTTAAA
Found at i:50833 original size:79 final size:79
Alignment explanation
Indices: 50739--50932 Score: 230
Period size: 79 Copynumber: 2.5 Consensus size: 79
50729 GAAAAATTTA
* * * * * *
50739 ATATTTTGCAGATAAAAACGGGGTCGGAGTACCCTCTTAGAAATAACGAGGTCAGAGTATCCCTA
1 ATATTTTGAAAATAAAATCGGGGTTGGAGTACCCTCTCAGAAATAACGAGGTCAGAGTATCCCCA
*
50804 A-TGATAAAAAATTG
66 ATTG-TAAAAAATCG
* * *
50818 ATGTTTTGAAAATAAAATCGGGATTGGAGTATCCC-CTCAGAAATAACGGGGTCAGAGTATCCCC
1 ATATTTTGAAAATAAAATCGGGGTTGGAGTA-CCCTCTCAGAAATAACGAGGTCAGAGTATCCCC
**
50882 AATTGTGGAAAATCG
65 AATTGTAAAAAATCG
* *
50897 ATATTTTGGAAATAAAATCGGGGTTGGAGTATCCTC
1 ATATTTTGAAAATAAAATCGGGGTTGGAGTACCCTC
50933 AATTGTGAAC
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.02
79 89 0.93
80 5 0.05
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (79 bp):
ATATTTTGAAAATAAAATCGGGGTTGGAGTACCCTCTCAGAAATAACGAGGTCAGAGTATCCCCA
ATTGTAAAAAATCG
Found at i:50930 original size:51 final size:51
Alignment explanation
Indices: 50872--50982 Score: 136
Period size: 51 Copynumber: 2.2 Consensus size: 51
50862 AACGGGGTCA
* * *
50872 GAGTATCCCCAATTGTGGAA-AATCGATATTTTGGAAATAAAA-TCGGGGTTG
1 GAGTATCCCCAATTGT-GAACAATCGATATTTTAGAAATAAAACT-AGAGTTG
* * *
50923 GAGTATCCTCAATTGTGAACAATCGGTGTTTTAGAAATAAAACTAGAGTTG
1 GAGTATCCCCAATTGTGAACAATCGATATTTTAGAAATAAAACTAGAGTTG
50974 GAGTATCCC
1 GAGTATCCC
50983 TTCGAAAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
50 3 0.06
51 47 0.92
52 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (51 bp):
GAGTATCCCCAATTGTGAACAATCGATATTTTAGAAATAAAACTAGAGTTG
Found at i:50998 original size:79 final size:77
Alignment explanation
Indices: 50915--51309 Score: 375
Period size: 79 Copynumber: 5.0 Consensus size: 77
50905 GAAATAAAAT
* * * *
50915 CGGGGTTGGAGTATCCTCAATTGTGAACAATCGGTGTTTTAGAAATAAAACTAGAGTTGGAGTAT
1 CGGGGTTGGAGTATCC-CAATTGTGAA-AATTGGTGTTTTGGAAATAAAACTGGGGTTGGAGTAT
*
50980 CCCTTC-GAAAATAA
64 CCCCTCAG-AAATAA
* * * * * *
50994 CGGGGTTAGAGTATCCCCGATGGTGAAAAATTAGTATTTTGGAAATAAAA-TCGGGGTTGAAGTA
1 CGGGGTTGGAGTAT-CCCAATTGTG-AAAATTGGTGTTTTGGAAATAAAACT-GGGGTTGGAGTA
*
51058 TCCCCTCAGAAATTA
63 TCCCCTCAGAAATAA
51073 CGGGGTTGGAGTATACCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAA-TCGGGGTTGGAGTA
1 CGGGGTTGGAGTAT-CCCAATTGTG-AAAATTGGTGTTTTGGAAATAAAACT-GGGGTTGGAGTA
51137 TCCCCTC-GAAAATAA
63 TCCCCTCAG-AAATAA
* * * **
51152 TGGGGTTGGAGTATCCCTAATGGTGAAAATTTGATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCC-AATTGTGAAAA-TTGGTGTTTTGGAAATAAAACTGGGGTTGGAGTAT
*
51217 CCCCTCATAAATAA
64 CCCCTCAGAAATAA
* ** * * * * * * * *
51231 CAGGGTCAGTGTATCTCCGATTGTGCAAAATCGGTGCTTTGAAAATAAAACCGGAGTTAGAGTAT
1 CGGGGTTGGAGTATC-CCAATTGTG-AAAATTGGTGTTTTGGAAATAAAACTGGGGTTGGAGTAT
51296 CCCCTCAGAAATAA
64 CCCCTCAGAAATAA
51310 AAACATGAAT
Statistics
Matches: 264, Mismatches: 41, Indels: 22
0.81 0.13 0.07
Matches are distributed among these distances:
78 9 0.03
79 244 0.92
80 11 0.04
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (77 bp):
CGGGGTTGGAGTATCCCAATTGTGAAAATTGGTGTTTTGGAAATAAAACTGGGGTTGGAGTATCC
CCTCAGAAATAA
Found at i:51132 original size:158 final size:156
Alignment explanation
Indices: 50915--51306 Score: 471
Period size: 158 Copynumber: 2.5 Consensus size: 156
50905 GAAATAAAAT
* * *
50915 CGGGGTTGGAGTATCCTCAATTGTGAACAATCGGTGTTTTAGAAATAAAACTAGAGTTGGAGTAT
1 CGGGGTTGGAGTATCC-CAATTGTGAAAAATCGGTGTTTTGGAAATAAAAC-GGAGTTGGAGTAT
* *
50980 CCCTTCGAAAATAACGGGGTTAGAGTATCCCCGATGGTGAAAAATTAG-TATTTTGGAAATAAAA
64 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCAATGGTG-AAAATTAGATATTTTGGAAATAAAA
* * *
51044 TCGGGGTTGAAGTATCCCCTCAGAAATTA
128 CCAGGGTTGAAGTATCCCCTCAGAAATAA
* *
51073 CGGGGTTGGAGTATACCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTAT-CCCAATTGTGAAAAATCGGTGTTTTGGAAATAAAA-CGGAGTTGGAGTAT
* * * * *
51138 CCCCTCGAAAATAATGGGGTTGGAGTATCCCTAATGGTGAAAATTTGATGTTTTGGAAATAAAAC
64 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCAATGGTGAAAATTAGATATTTTGGAAATAAAAC
* *
51203 CAGGGTTGGAGTATCCCCTCATAAATAA
129 CAGGGTTGAAGTATCCCCTCAGAAATAA
* ** * * * * * *
51231 CAGGGTCAGTGTATCTCCGATTGTGCAAAATCGGTGCTTTGAAAATAAAACCGGAGTTAGAGTAT
1 CGGGGTTGGAGTATC-CCAATTGTGAAAAATCGGTGTTTTGGAAATAAAA-CGGAGTTGGAGTAT
51296 CCCCTCAGAAA
64 CCCCTC-GAAA
51307 TAAAAACATG
Statistics
Matches: 200, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
157 8 0.04
158 185 0.93
159 7 0.04
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (156 bp):
CGGGGTTGGAGTATCCCAATTGTGAAAAATCGGTGTTTTGGAAATAAAACGGAGTTGGAGTATCC
CCTCGAAAATAACGGGGTTAGAGTATCCCCAATGGTGAAAATTAGATATTTTGGAAATAAAACCA
GGGTTGAAGTATCCCCTCAGAAATAA
Found at i:54307 original size:13 final size:13
Alignment explanation
Indices: 54289--54313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
54279 TTCAATGATT
54289 TGTATCGATACAA
1 TGTATCGATACAA
54302 TGTATCGATACA
1 TGTATCGATACA
54314 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:60563 original size:29 final size:29
Alignment explanation
Indices: 60531--60626 Score: 72
Period size: 30 Copynumber: 3.3 Consensus size: 29
60521 GCACTATCAT
60531 GTAATTTTATGCATTTTAGGACCATTTTA
1 GTAATTTTATGCATTTTAGGACCATTTTA
* *
60560 GTAAATTTTCATG-A-TTTAAGACTA-TTTA
1 GT-AATTTT-ATGCATTTTAGGACCATTTTA
* * ** *
60588 TGCAATTTCATGCATTTTAAGGGTCATCTTA
1 -GTAATTTTATGCATTTT-AGGACCATTTTA
60619 GTAATTTT
1 GTAATTTT
60627 TCATGATTTA
Statistics
Matches: 49, Mismatches: 11, Indels: 13
0.67 0.15 0.18
Matches are distributed among these distances:
27 3 0.06
28 10 0.20
29 14 0.29
30 16 0.33
31 6 0.12
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (29 bp):
GTAATTTTATGCATTTTAGGACCATTTTA
Found at i:60578 original size:58 final size:59
Alignment explanation
Indices: 60516--60664 Score: 162
Period size: 58 Copynumber: 2.6 Consensus size: 59
60506 TTTCTGATGT
* * *
60516 TTTAAGCACTA-TCATGTAATTTTATGCATTTT-AGGACCATTTTAGTAAATTTTCATGA
1 TTTAAG-ACTATTCATGCAATTTCATGCATTTTAAGGACCATCTTAGTAAATTTTCATGA
* ** *
60574 TTTAAGACTATTTATGCAATTTCATGCATTTTAAGGGTCATCTTAGTAATTTTTCATGA
1 TTTAAGACTATTCATGCAATTTCATGCATTTTAAGGACCATCTTAGTAAATTTTCATGA
* * *
60633 TTTAGGACCT-TT-ATGCATTTTAATGCATTTTA
1 TTTAAGA-CTATTCATGCAATTTCATGCATTTTA
60665 GTATTATTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
57 4 0.05
58 42 0.54
59 30 0.38
60 2 0.03
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (59 bp):
TTTAAGACTATTCATGCAATTTCATGCATTTTAAGGACCATCTTAGTAAATTTTCATGA
Found at i:60913 original size:78 final size:77
Alignment explanation
Indices: 60748--61051 Score: 290
Period size: 78 Copynumber: 3.9 Consensus size: 77
60738 CATTAAAGTC
* * * * * *
60748 ATTTAGGTAAAAGC-ACCTTAAAACCAAGTCTTTAGGGTCATGTAGAAACCTTCATATCAAAA-A
1 ATTTAGGTAATA-CTACCTTAAAACTAAGTCTTTA-GATCATGTAGGAACTTTCATGTCAAAACA
* *
60811 TGTCTATTAGGGTT
64 TGTCCATTAGGGAT
* * * * *
60825 ATTTAGGTAATGCTACCTTAAAACTAAGTCTTTAGCATTATGTGGGAACTTTCATGTCGATACAT
1 ATTTAGGTAATACTACCTTAAAACTAAGTCTTTAG-ATCATGTAGGAACTTTCATGTCAAAACAT
* *
60890 GTCTATTAGGGGT
65 GTCCATTAGGGAT
* * * * * * *
60903 ATTTAGGTAATACGACCTTAAAATTTAGTCCTTAAAATCATGTAGGAATTTTCATGTCAAAACTT
1 ATTTAGGTAATACTACCTTAAAACTAAGT-CTTTAGATCATGTAGGAACTTTCATGTCAAAACAT
*
60968 GTCCATTAGGAAT
65 GTCCATTAGGGAT
* * * * * *
60981 ATTTAAGTAATACTACCTTAAAACAAAGTC-TAAGGTCATGTAGGAACTTTCGTGTCAATACATG
1 ATTTAGGTAATACTACCTTAAAACTAAGTCTTTAGATCATGTAGGAACTTTCATGTCAAAACATG
61045 TCCATTA
66 TCCATTA
61052 AGGTCATGTA
Statistics
Matches: 185, Mismatches: 38, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
76 37 0.20
77 48 0.26
78 96 0.52
79 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (77 bp):
ATTTAGGTAATACTACCTTAAAACTAAGTCTTTAGATCATGTAGGAACTTTCATGTCAAAACATG
TCCATTAGGGAT
Found at i:61094 original size:39 final size:39
Alignment explanation
Indices: 61012--61094 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
61002 AACAAAGTCT
* *
61012 AAGGTCATGTAGGAACTTTCGTGTCAATACATGTCCATT
1 AAGGTCATGTAGGAACCTTCGTGTCAATACATGTCCATC
* *
61051 AAGGTCATGTAGGAACCTTCGTGTTGAA-ACATGTTCATC
1 AAGGTCATGTAGGAACCTTCGTG-TCAATACATGTCCATC
61090 AAGGT
1 AAGGT
61095 TATTTAGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 36 0.92
40 3 0.08
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (39 bp):
AAGGTCATGTAGGAACCTTCGTGTCAATACATGTCCATC
Found at i:62080 original size:23 final size:23
Alignment explanation
Indices: 62054--62098 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
62044 ACTTCAAACG
*
62054 AAATTAAAGTAAATTATGAAAAA
1 AAATGAAAGTAAATTATGAAAAA
* *
62077 AAATGAAATTCAATTATGAAAA
1 AAATGAAAGTAAATTATGAAAA
62099 TATTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.27
Consensus pattern (23 bp):
AAATGAAAGTAAATTATGAAAAA
Found at i:67180 original size:30 final size:30
Alignment explanation
Indices: 67107--67180 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
67097 TATTGGACCT
67107 AAATAAGCCCA-TATCTTCTGACTTGTACCC
1 AAATAAG-CCATTATCTTCTGACTTGTACCC
* *
67137 AAATAAGCCATTATCTTTTGATTTGTACCC
1 AAATAAGCCATTATCTTCTGACTTGTACCC
*
67167 AAATAAGCTATTAT
1 AAATAAGCCATTAT
67181 TTCAAACAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 3 0.08
30 37 0.93
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (30 bp):
AAATAAGCCATTATCTTCTGACTTGTACCC
Found at i:76483 original size:28 final size:28
Alignment explanation
Indices: 76443--76501 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
76433 TTATAATAGT
76443 TGGGAATTCAAGATGAGGAATGTGATTG
1 TGGGAATTCAAGATGAGGAATGTGATTG
76471 TGGGAATTCAAGATGAGGAATGTGATTG
1 TGGGAATTCAAGATGAGGAATGTGATTG
76499 TGG
1 TGG
76502 TGATTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.03, G:0.37, T:0.29
Consensus pattern (28 bp):
TGGGAATTCAAGATGAGGAATGTGATTG
Found at i:79723 original size:16 final size:16
Alignment explanation
Indices: 79702--79733 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79692 AGTTGATTAG
79702 AATGAAGCATTTTGAT
1 AATGAAGCATTTTGAT
79718 AATGAAGCATTTTGAT
1 AATGAAGCATTTTGAT
79734 TATCTTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
AATGAAGCATTTTGAT
Found at i:90133 original size:38 final size:39
Alignment explanation
Indices: 90089--90203 Score: 124
Period size: 41 Copynumber: 2.9 Consensus size: 39
90079 TAATAATTCT
*
90089 ATTATCACTTAAGAT-GTCTTATTCTTTTAAGATATGTA
1 ATTATCACTTAAGATAGTCTTATTCTTTTAAGATATATA
* * *
90127 ATTATCACTTTAGGATAATTCTTATTCTTTTAATATATATA
1 ATTATCAC-TTAAGAT-AGTCTTATTCTTTTAAGATATATA
* * *
90168 ATTATCACTTTAGGATAATTCTTATGCTTTTAAGAT
1 ATTATCAC-TTAAGAT-AGTCTTATTCTTTTAAGAT
90204 TTTTTTTTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
38 8 0.12
39 6 0.09
41 54 0.79
ACGTcount: A:0.32, C:0.10, G:0.09, T:0.49
Consensus pattern (39 bp):
ATTATCACTTAAGATAGTCTTATTCTTTTAAGATATATA
Found at i:90155 original size:41 final size:41
Alignment explanation
Indices: 90105--90203 Score: 171
Period size: 41 Copynumber: 2.4 Consensus size: 41
90095 ACTTAAGATG
*
90105 TCTTATTCTTTTAAGATATGTAATTATCACTTTAGGATAAT
1 TCTTATTCTTTTAAGATATATAATTATCACTTTAGGATAAT
*
90146 TCTTATTCTTTTAATATATATAATTATCACTTTAGGATAAT
1 TCTTATTCTTTTAAGATATATAATTATCACTTTAGGATAAT
*
90187 TCTTATGCTTTTAAGAT
1 TCTTATTCTTTTAAGAT
90204 TTTTTTTTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (41 bp):
TCTTATTCTTTTAAGATATATAATTATCACTTTAGGATAAT
Found at i:91393 original size:11 final size:11
Alignment explanation
Indices: 91374--91409 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
91364 GCTGGCCAAT
*
91374 GAAATGAAAAA
1 GAAAAGAAAAA
91385 GAAAAGAAAAA
1 GAAAAGAAAAA
*
91396 GAGAAGAAAAA
1 GAAAAGAAAAA
91407 GAA
1 GAA
91410 CAAAAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (11 bp):
GAAAAGAAAAA
Found at i:96269 original size:16 final size:16
Alignment explanation
Indices: 96248--96278 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96238 GTGTATATCT
96248 TCTACAGCTAATTCTA
1 TCTACAGCTAATTCTA
*
96264 TCTACAGCTCATTCT
1 TCTACAGCTAATTCT
96279 CTTAAATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.39
Consensus pattern (16 bp):
TCTACAGCTAATTCTA
Found at i:96819 original size:22 final size:24
Alignment explanation
Indices: 96793--96839 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
96783 CTGTTCCTGT
96793 ATAAGC-T-TCAAGTCTTGTGTGC
1 ATAAGCATGTCAAGTCTTGTGTGC
*
96815 ATAAGCTATGTCCAGTCTTGTGTGC
1 ATAAGC-ATGTCAAGTCTTGTGTGC
96840 GAGAGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
24 1 0.05
25 14 0.67
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (24 bp):
ATAAGCATGTCAAGTCTTGTGTGC
Found at i:101950 original size:15 final size:15
Alignment explanation
Indices: 101911--101956 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
101901 TAGTAATTCT
*
101911 AATATCTAAATCCGA
1 AATATCTGAATCCGA
*
101926 ATATTATCTGAATCCGC
1 A-A-TATCTGAATCCGA
101943 AATATCTGAATCCG
1 AATATCTGAATCCG
101957 TAAAAACGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 13 0.48
16 2 0.07
17 12 0.44
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (15 bp):
AATATCTGAATCCGA
Found at i:102286 original size:27 final size:27
Alignment explanation
Indices: 102248--102302 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
102238 AGCTATTCTC
102248 TTTCTAATCCTTCATTTATAAACTCAA
1 TTTCTAATCCTTCATTTATAAACTCAA
* *
102275 TTTCTATTCCTTTATTTATAAACTCAA
1 TTTCTAATCCTTCATTTATAAACTCAA
102302 T
1 T
102303 CTAAAACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (27 bp):
TTTCTAATCCTTCATTTATAAACTCAA
Found at i:106270 original size:16 final size:16
Alignment explanation
Indices: 106249--106298 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
106239 TCTATTTCAA
*
106249 TTCAAGCTTTTTTGAG
1 TTCAAGCTTTTTCGAG
*
106265 TTCAAG-TCTTTCGAG
1 TTCAAGCTTTTTCGAG
*
106280 TTTAAGCTTTTTCGAG
1 TTCAAGCTTTTTCGAG
106296 TTC
1 TTC
106299 GAGTTCAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.48
Consensus pattern (16 bp):
TTCAAGCTTTTTCGAG
Found at i:106919 original size:19 final size:18
Alignment explanation
Indices: 106892--106935 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
106882 TTTCTAAATA
* *
106892 ATATTTTTACTTAGTATAT
1 ATATCTTTAATTA-TATAT
106911 ATATCTTTAATTATATAT
1 ATATCTTTAATTATATAT
106929 -TATCTTT
1 ATATCTTT
106936 TATTTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 5 0.22
19 11 0.48
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (18 bp):
ATATCTTTAATTATATAT
Found at i:109048 original size:10 final size:10
Alignment explanation
Indices: 109033--109090 Score: 59
Period size: 10 Copynumber: 6.1 Consensus size: 10
109023 GGCAAGTAGT
*
109033 GAGAAAAAGA
1 GAGAAAAAAA
109043 GAGAAAAAAA
1 GAGAAAAAAA
*
109053 AAGAAAAAAA
1 GAGAAAAAAA
*
109063 GAG-AAAATA
1 GAGAAAAAAA
109072 GA-AAAAAAA
1 GAGAAAAAAA
*
109081 -AAAAAAAAA
1 GAGAAAAAAA
109090 G
1 G
109091 CTAAACCCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 1 0.03
9 19 0.47
10 20 0.50
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (10 bp):
GAGAAAAAAA
Found at i:109059 original size:8 final size:8
Alignment explanation
Indices: 109048--109086 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
109038 AAAGAGAGAA
109048 AAAAAAAG
1 AAAAAAAG
109056 AAAAAAAG
1 AAAAAAAG
*
109064 AGAAAATAG
1 A-AAAAAAG
109073 AAAAAAA-
1 AAAAAAAG
109080 AAAAAAA
1 AAAAAAA
109087 AAAGCTAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 7 0.25
8 14 0.50
9 7 0.25
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:109064 original size:22 final size:24
Alignment explanation
Indices: 109036--109086 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
109026 AAGTAGTGAG
* *
109036 AAAAAGAGAGAA-A-AAAAAAGAA
1 AAAAAGAGAAAATAGAAAAAAAAA
109058 AAAAAGAGAAAATAGAAAAAAAAA
1 AAAAAGAGAAAATAGAAAAAAAAA
109082 AAAAA
1 AAAAA
109087 AAAGCTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 11 0.44
23 1 0.04
24 13 0.52
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (24 bp):
AAAAAGAGAAAATAGAAAAAAAAA
Found at i:109079 original size:20 final size:20
Alignment explanation
Indices: 109034--109083 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
109024 GCAAGTAGTG
*
109034 AGAAAAAGAGAGAAAAAAAA
1 AGAAAAAAAGAGAAAAAAAA
109054 AGAAAAAAAGAGAAAATAGAAA
1 AGAAAAAAAGAGAAAA-A-AAA
109076 A-AAAAAAA
1 AGAAAAAAA
109084 AAAAAAGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 15 0.56
21 8 0.30
22 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (20 bp):
AGAAAAAAAGAGAAAAAAAA
Found at i:112570 original size:152 final size:149
Alignment explanation
Indices: 112294--112743 Score: 422
Period size: 152 Copynumber: 2.9 Consensus size: 149
112284 AAAACTCATG
**
112294 AAAATAAATGAATTTTTGAAACTAATTTAATATGAATTAAATAATAATATTTGATAAATTTTAAA
1 AAAATAAATGAATTTTTGAAACTAATTTAATACAAATTAAATAATAATATTTGATAAATTTTAAA
* * *
112359 AATTAAAAACGAAAAAAATCCTTCCAAAAATATTTACGGAGTAGAAAATTTTGTATTTTAGAAAC
66 AACTAAAAACGAAAAAAATCCTTCCAAAAATATTTACGGAGTAGAAAACTCTGTATTTTAGAAAC
112424 ATGGGAAGGAAAAAAATGA
131 ATGGGAAGGAAAAAAATGA
* * *
112443 AAAATGAATGAATTTTTGAAAAGTGATTTAATACAAATTAAATTAATAATATTTGATAAATTTTA
1 AAAATAAATGAATTTTTG-AAACTAATTTAATACAAATTAAA-TAATAATATTTGATAAATTTTA
* * *
112508 AAAACTAAAAACTAAGAAAAATTCAC-T-CAAAAATATTTACGTAGTAGAAAACTCTGTGTTTTA
64 AAAACTAAAAACGAA-AAAAA-TC-CTTCCAAAAATATTTACGGAGTAGAAAACTCTGTATTTTA
* *
112571 GAAACATGGGAGTTTCAAGAAAAAAATAAAA
126 GAAACATGGGA-----AGGAAAAAAAT--GA
* * **
112602 AAACTCATGAAAATGAATAAATTTTTAAAAACTAATCTAATGTAAATTAAATAATAATATTTGAT
1 AAA---AT--AAATG----AATTTTT-GAAACTAATTTAATACAAATTAAATAATAATATTTGAT
* * * * * * * * * *
112667 GAATTTTAATAA-TTAAAACTAAGAAATTCCCTCCGAAAACATTTACGGAGTAGAAAACTTTGTA
56 AAATTTTAAAAACTAAAAACGAAAAAAATCCTTCCAAAAATATTTACGGAGTAGAAAACTCTGTA
112731 TTTT-GAAAACATG
121 TTTTAG-AAACATG
112744 AAAAATTCTT
Statistics
Matches: 246, Mismatches: 30, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
149 17 0.07
150 19 0.08
151 35 0.14
152 48 0.20
153 3 0.01
154 1 0.00
157 10 0.04
159 4 0.02
162 2 0.01
163 1 0.00
164 8 0.03
165 40 0.16
166 9 0.04
167 24 0.10
168 25 0.10
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.32
Consensus pattern (149 bp):
AAAATAAATGAATTTTTGAAACTAATTTAATACAAATTAAATAATAATATTTGATAAATTTTAAA
AACTAAAAACGAAAAAAATCCTTCCAAAAATATTTACGGAGTAGAAAACTCTGTATTTTAGAAAC
ATGGGAAGGAAAAAAATGA
Found at i:112651 original size:168 final size:165
Alignment explanation
Indices: 112443--112743 Score: 399
Period size: 165 Copynumber: 1.8 Consensus size: 165
112433 AAAAAAATGA
* * * * *
112443 AAAATGAATGAATTTTTGAAAAGTGATTTAATACAAATTAAATTAATAATATTTGATAAATTTTA
1 AAAATGAATAAATTTTTAAAAACTAATCTAATACAAATTAAA-TAATAATATTTGATAAATTTTA
* * *
112508 AAAACTAAAAACTAAGAAAAATTCACT-CAAAAATATTTACGTAGTAGAAAACTCTGTGTTTT-A
65 AAAA-TAAAAACTAAG--AAATTCACTCCAAAAACATTTACGGAGTAGAAAACTCTGTATTTTGA
112571 GAAACATGGGAGTTTCAAGAAAAAAATAAAAAAACTCATG
127 -AAACATGGGAGTTTCAAGAAAAAAATAAAAAAACTCATG
** *
112611 AAAATGAATAAATTTTTAAAAACTAATCTAATGTAAATTAAATAATAATATTTGATGAATTTTAA
1 AAAATGAATAAATTTTTAAAAACTAATCTAATACAAATTAAATAATAATATTTGATAAATTTTAA
* * * * *
112676 TAATTAAAACTAAGAAATTCCCTCCGAAAACATTTACGGAGTAGAAAACTTTGTATTTTGAAAAC
66 AAATAAAAACTAAGAAATTCACTCCAAAAACATTTACGGAGTAGAAAACTCTGTATTTTGAAAAC
112741 ATG
131 ATG
112744 AAAAATTCTT
Statistics
Matches: 115, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
164 8 0.07
165 37 0.32
166 11 0.10
167 24 0.21
168 35 0.30
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (165 bp):
AAAATGAATAAATTTTTAAAAACTAATCTAATACAAATTAAATAATAATATTTGATAAATTTTAA
AAATAAAAACTAAGAAATTCACTCCAAAAACATTTACGGAGTAGAAAACTCTGTATTTTGAAAAC
ATGGGAGTTTCAAGAAAAAAATAAAAAAACTCATG
Found at i:112794 original size:165 final size:167
Alignment explanation
Indices: 112477--112796 Score: 366
Period size: 165 Copynumber: 1.9 Consensus size: 167
112467 GATTTAATAC
*
112477 AAATTAAATTAATAATATTTGATAAATTTTAAAAACTAAAAACTAAGAAAAATTCACTCAAAAAT
1 AAATTAAATTAATAATATTTGATAAATTTTAAAAACTAAAAACTAAG-AAAATTCACTCAAAAAC
* * ** **
112542 ATTTACGTAGTAGAAAACTCTGTGTTTTAGAAACATGGGAGTTTCAAGAAAAAAATAAAAAAACT
65 ATTTACGGAGTAGAAAACTCTGTATTTTAGAAACATGAAAAATTCAAGAAAAAAATAAAAAAACT
* *
112607 CATGAAAATGAATAAATTTTTAAAAACTAATCTAATGT
130 CATGAAAATAAAAAAATTTTTAAAAACTAATCTAATGT
* * * * *
112645 AAATTAAA-TAATAATATTTGATGAATTTTAATAA-TTAAAACTAAG-AAATTCCCTCCGAAAAC
1 AAATTAAATTAATAATATTTGATAAATTTTAAAAACTAAAAACTAAGAAAATTCACT-CAAAAAC
* * * * *
112707 ATTTACGGAGTAGAAAACTTTGTATTTT-GAAAACATGAAAAATTCTTA-AAGAAAAT-CAATAA
65 ATTTACGGAGTAGAAAACTCTGTATTTTAG-AAACATGAAAAATTC-AAGAAAAAAATAAAAAAA
*
112769 CTCAT-AAAATAAAAAGAATTTTTTAAAA
128 CTCATGAAAATAAAAA-AATTTTTAAAAA
112797 TTGATTTAAT
Statistics
Matches: 128, Mismatches: 20, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
163 8 0.06
164 29 0.23
165 48 0.38
166 11 0.09
167 24 0.19
168 8 0.06
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (167 bp):
AAATTAAATTAATAATATTTGATAAATTTTAAAAACTAAAAACTAAGAAAATTCACTCAAAAACA
TTTACGGAGTAGAAAACTCTGTATTTTAGAAACATGAAAAATTCAAGAAAAAAATAAAAAAACTC
ATGAAAATAAAAAAATTTTTAAAAACTAATCTAATGT
Found at i:114730 original size:112 final size:112
Alignment explanation
Indices: 114533--114758 Score: 452
Period size: 112 Copynumber: 2.0 Consensus size: 112
114523 TCATGAAAGA
114533 TCAAAGCATATTGATGTGAGGTTAAATTGCATTTGGGATATAATTGAAGAAAAGTTATTCTCCAT
1 TCAAAGCATATTGATGTGAGGTTAAATTGCATTTGGGATATAATTGAAGAAAAGTTATTCTCCAT
114598 AGAGAAAATAGCCATAACATCCAGCAGATATGTTAATAAAGTCATTG
66 AGAGAAAATAGCCATAACATCCAGCAGATATGTTAATAAAGTCATTG
114645 TCAAAGCATATTGATGTGAGGTTAAATTGCATTTGGGATATAATTGAAGAAAAGTTATTCTCCAT
1 TCAAAGCATATTGATGTGAGGTTAAATTGCATTTGGGATATAATTGAAGAAAAGTTATTCTCCAT
114710 AGAGAAAATAGCCATAACATCCAGCAGATATGTTAATAAAGTCATTG
66 AGAGAAAATAGCCATAACATCCAGCAGATATGTTAATAAAGTCATTG
114757 TC
1 TC
114759 TGCAGAGAAG
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 114 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (112 bp):
TCAAAGCATATTGATGTGAGGTTAAATTGCATTTGGGATATAATTGAAGAAAAGTTATTCTCCAT
AGAGAAAATAGCCATAACATCCAGCAGATATGTTAATAAAGTCATTG
Found at i:117378 original size:3 final size:3
Alignment explanation
Indices: 117372--117396 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
117362 TATTTTTTTT
117372 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
117397 CTCATAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:121544 original size:26 final size:26
Alignment explanation
Indices: 121430--121548 Score: 100
Period size: 26 Copynumber: 4.4 Consensus size: 26
121420 CAGTTAGACA
121430 ATTAAGTTAAAATTTAAATATTTTAAT
1 ATTAA-TTAAAATTTAAATATTTTAAT
*
121457 ATTAATTAAAA-ATAAATTTGATTTTATAT
1 ATTAATTAAAATTTAAA--T-ATTTTA-AT
* * * *
121486 TTTATTTTAAATTTAATTA-TTT-AT
1 ATTAATTAAAATTTAAATATTTTAAT
121510 ATTTGAATTAAAATTTAAATATTTTAAT
1 A-TT-AATTAAAATTTAAATATTTTAAT
*
121538 ACTAATTAAAA
1 ATTAATTAAAA
121549 ATAAATTATA
Statistics
Matches: 72, Mismatches: 11, Indels: 19
0.71 0.11 0.19
Matches are distributed among these distances:
24 2 0.03
25 6 0.08
26 30 0.42
27 11 0.15
28 10 0.14
29 10 0.14
30 3 0.04
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (26 bp):
ATTAATTAAAATTTAAATATTTTAAT
Found at i:121792 original size:13 final size:14
Alignment explanation
Indices: 121773--121828 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 14
121763 ATTTAATATT
121773 TTAAAAAAATTAAA
1 TTAAAAAAATTAAA
*
121787 -TAAAAATATTAAA
1 TTAAAAAAATTAAA
*
121800 TTTAAAAAA-TAAA
1 TTAAAAAAATTAAA
121813 CTTAAAAATAATTAAA
1 -TTAAAAA-AATTAAA
121829 ATTTATTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 16 0.47
14 12 0.35
15 2 0.06
16 4 0.12
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
TTAAAAAAATTAAA
Found at i:121803 original size:28 final size:30
Alignment explanation
Indices: 121772--121833 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 30
121762 AATTTAATAT
121772 TTTAAAAAAATTAAA-TAAAAAT-ATT-AAA
1 TTTAAAAAAA-TAAACTAAAAATAATTAAAA
121800 TTT-AAAAAATAAACTTAAAAATAATTAAAA
1 TTTAAAAAAATAAAC-TAAAAATAATTAAAA
121830 TTTA
1 TTTA
121834 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
26 4 0.14
27 6 0.21
28 10 0.34
29 3 0.10
30 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (30 bp):
TTTAAAAAAATAAACTAAAAATAATTAAAA
Found at i:128979 original size:20 final size:20
Alignment explanation
Indices: 128954--129053 Score: 84
Period size: 20 Copynumber: 5.7 Consensus size: 20
128944 GTTTGAAGCA
128954 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
*
128974 ATGTATCGAT---A--T--A
1 ATGTATCGATACAATGTGCC
128987 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
*
129007 ATGTATCGAT---A--T--A
1 ATGTATCGATACAATGTGCC
129020 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
129040 ATGTATCGATACAA
1 ATGTATCGATACAA
129054 ACAGTGGTAG
Statistics
Matches: 62, Mismatches: 4, Indels: 28
0.66 0.04 0.30
Matches are distributed among these distances:
13 20 0.32
15 2 0.03
16 2 0.03
17 2 0.03
18 2 0.03
20 34 0.55
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:128992 original size:13 final size:13
Alignment explanation
Indices: 128974--129036 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 13
128964 ACAATGTGCC
*
128974 ATGTATCGATATA
1 ATGTATCGATACA
128987 ATGTATCGATACA
1 ATGTATCGATACA
*
129000 ATG--T-G---CC
1 ATGTATCGATACA
*
129007 ATGTATCGATATA
1 ATGTATCGATACA
129020 ATGTATCGATACA
1 ATGTATCGATACA
129033 ATGT
1 ATGT
129037 GCCATGTATC
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
7 4 0.10
9 1 0.03
10 2 0.05
11 1 0.03
13 31 0.79
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:128995 original size:33 final size:33
Alignment explanation
Indices: 128953--129050 Score: 196
Period size: 33 Copynumber: 3.0 Consensus size: 33
128943 CGTTTGAAGC
128953 AATGTATCGATACAATGTGCCATGTATCGATAT
1 AATGTATCGATACAATGTGCCATGTATCGATAT
128986 AATGTATCGATACAATGTGCCATGTATCGATAT
1 AATGTATCGATACAATGTGCCATGTATCGATAT
129019 AATGTATCGATACAATGTGCCATGTATCGATA
1 AATGTATCGATACAATGTGCCATGTATCGATA
129051 CAAACAGTGG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (33 bp):
AATGTATCGATACAATGTGCCATGTATCGATAT
Found at i:129129 original size:19 final size:20
Alignment explanation
Indices: 129083--129134 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
129073 TGCCAGTTTT
**
129083 ATGTATCGATACAATTGTCC
1 ATGTATCGATACAATTGAAC
*
129103 ATGAATCGATACAA-TGAAC
1 ATGTATCGATACAATTGAAC
129122 ATGTATCGATACA
1 ATGTATCGATACA
129135 TTGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACAATTGAAC
Found at i:129139 original size:13 final size:13
Alignment explanation
Indices: 129123--129147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
129113 ACAATGAACA
129123 TGTATCGATACAT
1 TGTATCGATACAT
129136 TGTATCGATACA
1 TGTATCGATACA
129148 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:129727 original size:21 final size:23
Alignment explanation
Indices: 129701--129745 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
129691 GGCTCTCGTT
*
129701 AAAAAA-TT-TTCCCTTTGATAA
1 AAAAAATTTCTTCCCCTTGATAA
129722 AAAAAATTTCTTCCCCTTGATAA
1 AAAAAATTTCTTCCCCTTGATAA
129745 A
1 A
129746 CGGTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.29
22 2 0.10
23 13 0.62
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (23 bp):
AAAAAATTTCTTCCCCTTGATAA
Found at i:129763 original size:31 final size:30
Alignment explanation
Indices: 129719--129829 Score: 103
Period size: 31 Copynumber: 3.9 Consensus size: 30
129709 TTCCCTTTGA
*
129719 TAAAAAAAATTTCTTCCCCTTGATAAACGGT
1 TAAAAAGAATTTC-TCCCCTTGATAAACGGT
* *
129750 TAAAAAGATTTTCTCCCCCT--T-AA----
1 TAAAAAGAATTTCTCCCCTTGATAAACGGT
129773 TAAAAA-AATTTCTCCCCTTTGATAAACGGT
1 TAAAAAGAATTTCTCCCC-TTGATAAACGGT
*
129803 TAAAAAGATTTTCTCCCCCTTGATAAA
1 TAAAAAGAATTTCT-CCCCTTGATAAA
129830 AATTTATTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
22 10 0.16
23 7 0.11
25 1 0.02
26 2 0.03
27 2 0.03
28 1 0.02
30 12 0.19
31 25 0.39
32 4 0.06
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (30 bp):
TAAAAAGAATTTCTCCCCTTGATAAACGGT
Found at i:129777 original size:22 final size:22
Alignment explanation
Indices: 129750--129798 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
129740 GATAAACGGT
*
129750 TAAAAAGATTTTCTCCCCCTTAA
1 TAAAAA-AATTTCTCCCCCTTAA
* *
129773 TAAAAAAATTTCTCCCCTTTGA
1 TAAAAAAATTTCTCCCCCTTAA
129795 TAAA
1 TAAA
129799 CGGTTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (22 bp):
TAAAAAAATTTCTCCCCCTTAA
Found at i:129784 original size:53 final size:53
Alignment explanation
Indices: 129721--129831 Score: 197
Period size: 53 Copynumber: 2.1 Consensus size: 53
129711 CCCTTTGATA
129721 AAAAAAATTTCTTCCCC-TTGATAAACGGTTAAAAAGATTTTCTCCCCCTTAAT
1 AAAAAAATTTC-TCCCCTTTGATAAACGGTTAAAAAGATTTTCTCCCCCTTAAT
*
129774 AAAAAAATTTCTCCCCTTTGATAAACGGTTAAAAAGATTTTCTCCCCCTTGAT
1 AAAAAAATTTCTCCCCTTTGATAAACGGTTAAAAAGATTTTCTCCCCCTTAAT
129827 AAAAA
1 AAAAA
129832 TTTATTTTCA
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
52 5 0.09
53 51 0.91
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (53 bp):
AAAAAAATTTCTCCCCTTTGATAAACGGTTAAAAAGATTTTCTCCCCCTTAAT
Found at i:135973 original size:3 final size:3
Alignment explanation
Indices: 135965--135995 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
135955 TCCGAGTCAC
*
135965 CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
135996 GTCTTTGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:137385 original size:13 final size:13
Alignment explanation
Indices: 137367--137396 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
137357 ACAATTCATC
*
137367 ATGTATCGATATA
1 ATGTATCGATACA
137380 ATGTATCGATACA
1 ATGTATCGATACA
137393 ATGT
1 ATGT
137397 GCCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:137474 original size:20 final size:20
Alignment explanation
Indices: 137451--137499 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
137441 TCACGTATTA
*
137451 ATACAATTGTCCATGTATCG
1 ATACAATTGTACATGTATCG
*
137471 ATACAA-TGAACATGTATCG
1 ATACAATTGTACATGTATCG
137490 ATAC-ATTGTA
1 ATACAATTGTA
137500 TCGATACAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 18 0.72
20 6 0.24
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (20 bp):
ATACAATTGTACATGTATCG
Found at i:137501 original size:13 final size:13
Alignment explanation
Indices: 137483--137507 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137473 ACAATGAACA
137483 TGTATCGATACAT
1 TGTATCGATACAT
137496 TGTATCGATACA
1 TGTATCGATACA
137508 ACGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:137524 original size:33 final size:32
Alignment explanation
Indices: 137464--137528 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
137454 CAATTGTCCA
*
137464 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAACGAACATGTATCGATACAT
137496 TGTATCGATACAACGCATA-ATGTATCGATACAT
1 TGTATCGATACAACG-A-ACATGTATCGATACAT
137529 CTGGGTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAACGAACATGTATCGATACAT
Found at i:138930 original size:79 final size:79
Alignment explanation
Indices: 138826--139140 Score: 404
Period size: 79 Copynumber: 4.0 Consensus size: 79
138816 ATTCATGTTT
* * * *
138826 TTATTTCCGAGGGGATACTCTAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATTGAGG
1 TTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGG
*
138891 ATACTCTAACCTCG
66 ATACTCCAACCTCG
* * *
138905 TTATTTCCGAGGGGATGCTCCAACCCC-AGTTTTATTTCC-AAATACTAATTTTTCACAATC-AG
1 TTATTTCCGAGGGGATACTCCAACCCCGA-TTTTATTTCCAAAACACCAATTTTTCACAATCGA-
* * *
138967 GGATATTCTAATCC-CA
64 GGATACTCCAA-CCTCG
* * * * *
138983 TTATTTCCGAGGGGATACTCTAACCCCGGTTTTATTTCCAAAACACTAATTTTTCATAATCGGGG
1 TTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGG
139048 ATACTCCAACCTCG
66 ATACTCCAACCTCG
* * *
139062 TTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGG
1 TTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGG
139127 ATACTCCAACCTCG
66 ATACTCCAACCTCG
139141 GTTTTATTTC
Statistics
Matches: 205, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
77 1 0.00
78 66 0.32
79 138 0.67
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (79 bp):
TTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAGG
ATACTCCAACCTCG
Found at i:139037 original size:157 final size:158
Alignment explanation
Indices: 138826--139129 Score: 488
Period size: 157 Copynumber: 1.9 Consensus size: 158
138816 ATTCATGTTT
* *
138826 TTATTTCCGAGGGGATACTCTAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATTGAGG
1 TTATTTCCGAGGGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGAGG
* *
138891 ATACTCTAACCTCGTTATTTCCGAGGGGATGCTCCAACCCC-AGTTTTATTTCCAAATAC-T-AA
66 ATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGA-TTTTATTTCCAAA-ACATCAA
138953 TTTTTCACAATCAGGGATATTCTAATCCCA
129 TTTTTCACAATCAGGGATATTCTAATCCCA
* * *
138983 TTATTTCCGAGGGGATACTCTAACCCCGGTTTTATTTCCAAAACACTAATTTTTCATAATCGGGG
1 TTATTTCCGAGGGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGAGG
*
139048 ATACTCCAACCTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATT
66 ATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATT
*
139113 TTTCACAATCGGGGATA
131 TTTCACAATCAGGGATA
139130 CTCCAACCTC
Statistics
Matches: 135, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
156 2 0.01
157 112 0.83
158 21 0.16
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (158 bp):
TTATTTCCGAGGGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGAGG
ATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATT
TTTCACAATCAGGGATATTCTAATCCCA
Found at i:139156 original size:130 final size:130
Alignment explanation
Indices: 138993--139268 Score: 516
Period size: 130 Copynumber: 2.1 Consensus size: 130
138983 TTATTTCCGA
* *
138993 GGGGATACTCTAACCCCGGTTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAAATTTTCATAATCGGGGATACTCCAAC
139058 CTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCACAATC
66 CTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCACAATC
*
139123 GGGGATACTCCAACCTCGGTTTTATTTCCAAAACACTAAATTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAAATTTTCATAATCGGGGATACTCCAAC
*
139188 CTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCATAATC
66 CTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCACAATC
139253 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
139269 TGTTATTTTT
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 141 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (130 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAAATTTTCATAATCGGGGATACTCCAAC
CTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCACAATC
Found at i:139189 original size:51 final size:51
Alignment explanation
Indices: 139072--139191 Score: 188
Period size: 51 Copynumber: 2.4 Consensus size: 51
139062 TTATTTCTGA
* *
139072 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCACAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAAATTTTCACAATC
* *
139123 GGGGATACTCCAACCTCGGTTTTATTTCCAAAACA-CTAAATTTTCATAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAACATC-AAATTTTCACAATC
139174 GGGGATACTCCAACCTCG
1 GGGGATACTCCAACCTCG
139192 TTATTTCTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 1 0.02
51 63 0.98
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAAATTTTCACAATC
Found at i:139206 original size:79 final size:79
Alignment explanation
Indices: 139123--139486 Score: 457
Period size: 79 Copynumber: 4.6 Consensus size: 79
139113 TTTCACAATC
* * *
139123 GGGGATACTCCAACCTCGGTTTTATTTCCAAAACACTAAATTTTCATAATCGGGGATACTCCAA-
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAAC
*
139187 CCTCGTTATTTCTGA
66 CCT-GTTATTTTTGA
139202 GGGGATACTCCAACCCCGATTTTATTTCCAAAACA-TCAATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACT-AATTTTTCATAATCGGGGATACTCCAA
139266 CCCTGTTATTTTTGA
65 CCCTGTTATTTTTGA
* * * * *
139281 GGGGATACTCTAACCCCGATTTTATTTCTAAAATATCT-ATTTTTCATAATCGGAGATACTTCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACA-CTAATTTTTCATAATCGGGGATACTCCAA
*
139345 CCCTATTATTTTTGA
65 CCCTGTTATTTTTGA
* * * * ** *
139360 AGGGATACTCCAACCCCAATTTTATTTCTAGAACACCGATTTTTCATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAAC
139425 CCTGTTATTTTTGA
66 CCTGTTATTTTTGA
** * * *
139439 AAGGATACTCCAACCCCG-TCTTTATCTCCAAAATATTAAATTTTTCAT
1 GGGGATACTCCAACCCCGAT-TTTATTTCCAAAACACT-AATTTTTCAT
139487 CAATGAGTAT
Statistics
Matches: 249, Mismatches: 29, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
78 3 0.01
79 233 0.94
80 12 0.05
81 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTCATAATCGGGGATACTCCAAC
CCTGTTATTTTTGA
Found at i:139227 original size:209 final size:208
Alignment explanation
Indices: 138915--139347 Score: 620
Period size: 209 Copynumber: 2.1 Consensus size: 208
138905 TTATTTCCGA
* * * * *
138915 GGGGATGCTCCAACCCCAGTTTTATTTCCAAATACTAATTTTTCACAATCAGGGATATTCTAATC
1 GGGGATACTCCAACCCCAGTTTTATTTCCAAACACTAAATTTTCACAATCAGGGATACTCCAATC
* *
138980 CCATTATTTCCGAGGGGATACTCTAACCCCGGTTTTATTTCCAAAACA-CTAATTTTTCATAATC
66 CCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATC-AATTTTTCATAATC
139044 GGGGATACTCCAA-CCTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAT
130 GGGGATACTCCAACCCT-GTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAT
139108 CAATTTTTCACAATC
194 CAATTTTTCACAATC
* * * *
139123 GGGGATACTCCAACCTCGGTTTTATTTCCAAAACACTAAATTTTCATAATCGGGGATACTCCAA-
1 GGGGATACTCCAACCCCAGTTTTATTTCC-AAACACTAAATTTTCACAATCAGGGATACTCCAAT
* *
139187 CCTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCATAAT
65 CC-CATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCATAAT
* * * *
139252 CGGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTCTAACCCCGATTTTATTTCTAAAATAT
129 CGGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAT
* *
139317 CTATTTTTCATAATC
194 CAATTTTTCACAATC
* *
139332 GGAGATACTTCAACCC
1 GGGGATACTCCAACCC
139348 TATTATTTTT
Statistics
Matches: 199, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
208 28 0.14
209 167 0.84
210 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (208 bp):
GGGGATACTCCAACCCCAGTTTTATTTCCAAACACTAAATTTTCACAATCAGGGATACTCCAATC
CCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTCATAATCG
GGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCA
ATTTTTCACAATC
Found at i:143544 original size:16 final size:16
Alignment explanation
Indices: 143523--143553 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
143513 CAACATTTCC
*
143523 TCTATTAAAACTTTTT
1 TCTATTAAAAATTTTT
143539 TCTATTAAAAATTTT
1 TCTATTAAAAATTTT
143554 GAAAGCCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
TCTATTAAAAATTTTT
Found at i:148403 original size:13 final size:13
Alignment explanation
Indices: 148385--148474 Score: 77
Period size: 13 Copynumber: 7.0 Consensus size: 13
148375 TGCATGAACT
148385 TGTATCGATACAA
1 TGTATCGATACAA
148398 TGTATCGATACAA
1 TGTATCGATACAA
148411 TGAACATTTATCGATACAA
1 TG------TATCGATACAA
148430 TGTATCGATAC-A
1 TGTATCGATACAA
148442 ---AT-GA-AC-A
1 TGTATCGATACAA
148449 TGTATCGATACAA
1 TGTATCGATACAA
148462 TGTATCGATACAA
1 TGTATCGATACAA
148475 AGCATTATGT
Statistics
Matches: 65, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
7 3 0.05
8 2 0.03
9 2 0.03
10 2 0.03
11 2 0.03
12 3 0.05
13 38 0.58
19 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:148423 original size:32 final size:32
Alignment explanation
Indices: 148378--148474 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
148368 ACAATTGTGC
148378 ATGAAC-TTGTATCGATACAATGTATCGATACA
1 ATGAACATT-TATCGATACAATGTATCGATACA
148410 ATGAACATTTATCGATACAATGTATCGATACA
1 ATGAACATTTATCGATACAATGTATCGATACA
*
148442 ATGAACATGTATCGATACAATGTATCGATACA
1 ATGAACATTTATCGATACAATGTATCGATACA
148474 A
1 A
148475 AGCATTATGT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 61 0.97
33 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.30
Consensus pattern (32 bp):
ATGAACATTTATCGATACAATGTATCGATACA
Found at i:148424 original size:19 final size:18
Alignment explanation
Indices: 148400--148463 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
148390 CGATACAATG
148400 TATCGATACAATGAACATT
1 TATCGATACAATGAACA-T
148419 TATCGATACAATG-----
1 TATCGATACAATGAACAT
148432 TATCGATACAATGAACAT
1 TATCGATACAATGAACAT
148450 GTATCGATACAATG
1 -TATCGATACAATG
148464 TATCGATACA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 13 0.33
19 26 0.67
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (18 bp):
TATCGATACAATGAACAT
Found at i:150686 original size:19 final size:18
Alignment explanation
Indices: 150663--150745 Score: 64
Period size: 19 Copynumber: 4.6 Consensus size: 18
150653 ATTATTTTAC
150663 TATAGTTATTTTATTTTT
1 TATAGTTATTTTATTTTT
** *
150681 TGATAGTTATTACATAATTT
1 T-ATAGTTATTTTAT-TTTT
* *
150701 T-T--CTATTTTATTTTAC
1 TATAGTTATTTTATTTT-T
150717 TATAGTTATTTTATTTTT
1 TATAGTTATTTTATTTTT
150735 TGATAGTTATT
1 T-ATAGTTATT
150746 ACATAATTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 13
0.68 0.14 0.18
Matches are distributed among these distances:
15 2 0.04
16 7 0.15
17 1 0.02
18 3 0.06
19 31 0.65
20 4 0.08
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (18 bp):
TATAGTTATTTTATTTTT
Found at i:150715 original size:54 final size:54
Alignment explanation
Indices: 150654--150762 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
150644 AGTTAAATGA
150654 TTATTTTACTATAGTTATTTTATTTTTTGATAGTTATTACATAATTTTTCTATT
1 TTATTTTACTATAGTTATTTTATTTTTTGATAGTTATTACATAATTTTTCTATT
150708 TTATTTTACTATAGTTATTTTATTTTTTGATAGTTATTACATAATTTTTCTATT
1 TTATTTTACTATAGTTATTTTATTTTTTGATAGTTATTACATAATTTTTCTATT
150762 T
1 T
150763 AGATAAGGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63
Consensus pattern (54 bp):
TTATTTTACTATAGTTATTTTATTTTTTGATAGTTATTACATAATTTTTCTATT
Found at i:154723 original size:23 final size:23
Alignment explanation
Indices: 154682--154739 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
154672 TGAAAAGTTA
* *
154682 TCTAAATAAATAAAATTAACAAT
1 TCTAATTAAATTAAATTAACAAT
*
154705 T-TAATTAGAATTAAATTAAGAAT
1 TCTAATTA-AATTAAATTAACAAT
154728 TCTAATTAAATT
1 TCTAATTAAATT
154740 CCTTACCAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 5 0.17
23 19 0.63
24 6 0.20
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (23 bp):
TCTAATTAAATTAAATTAACAAT
Found at i:155890 original size:164 final size:162
Alignment explanation
Indices: 155665--156168 Score: 532
Period size: 164 Copynumber: 3.1 Consensus size: 162
155655 TTTAAAAATC
* * *
155665 AAAATT-ATTTAAATATCATCATTTAATTCGCATTAAATTAGTTTTGAAAATTTCTTTTTATTTC
1 AAAATTCA-TTAAATATCATCATTTAATTCACATTAAATCAGTTTTAAAAATTTC-TTTTATTTC
** *
155729 ATAAATGTT-TCATATTTTTTT-AAATTTTTTTGTTTTCGAAATACGAAGTTTTTTACTCCGTAA
64 ATAAAT-TTATCAT-TTTTTTTAAAATTTTCATGTTTTCGAAATACGAAGTTTTTTATTCCGTAA
* *
155792 ATGTTTTCAAGAGGATTTTTCTTGGTTTAAAATATTT
127 ATGTTTTCAGGGGGATTTTTCTTGGTTTAAAAT-TTT
* *
155829 AAAATTCATTAAATATTATCATTTAATTCACATTAAATCAGTTTTAAAAAATTTCTTTTATTTAA
1 AAAATTCATTAAATATCATCATTTAATTCACATTAAATCAGTTTT-AAAAATTTCTTTTATTTCA
* * * * ** *
155894 TGAATTTATCATTTTTTCTTAAAATTTTCATGTTTTCGAAGTATGGAGTTTTCAATTTCGTAAAT
65 TAAATTTATCATTTTTT-TTAAAATTTTCATGTTTTCGAAATACGAAGTTTTTTATTCCGTAAAT
* *
155959 G-TTTCAGGGGGATTTTTCTTGGTTTGTAATTTTT
129 GTTTTCAGGGGGATTTTTCTTGGTTT-AAAATTTT
* * * *
155993 AAAATTCATTAAATATCATCATTTAATTCATAGTGAATCAGTTTTGAAAAA-TTCATTTATTTTC
1 AAAATTCATTAAATATCATCATTTAATTCACATTAAATCAGTTTT-AAAAATTTCTTTTA-TTTC
* * * * * * **
156057 ATAAGTTTGTCATTTTTTCTTTGAAATTCTCATGTTTTCGAAAAACTAAGTTTTTTATTCAATAA
64 ATAAATTTATCA-TTTTT-TTTAAAATTTTCATGTTTTCGAAATACGAAGTTTTTTATTCCGTAA
* * **
156122 ATATTTTTAGGGGGATTTTTTCTCAGTTTAAAATTTT
127 ATGTTTTCAGGGGGA-TTTTTCTTGGTTTAAAATTTT
156159 AAAAATTCAT
1 -AAAATTCAT
156169 CTAACATTGT
Statistics
Matches: 281, Mismatches: 47, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
163 14 0.05
164 142 0.51
165 88 0.31
166 17 0.06
167 20 0.07
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (162 bp):
AAAATTCATTAAATATCATCATTTAATTCACATTAAATCAGTTTTAAAAATTTCTTTTATTTCAT
AAATTTATCATTTTTTTTAAAATTTTCATGTTTTCGAAATACGAAGTTTTTTATTCCGTAAATGT
TTTCAGGGGGATTTTTCTTGGTTTAAAATTTT
Found at i:156717 original size:11 final size:10
Alignment explanation
Indices: 156699--156741 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
156689 AAAAAAACTT
*
156699 AGAGAAAAAG
1 AGAGAAAAAA
156709 AG-GAAAAAA
1 AGAGAAAAAA
156718 AGAGAAAAAAA
1 AGAG-AAAAAA
*
156729 AAAGAAAAAA
1 AGAGAAAAAA
156739 AGA
1 AGA
156742 AAATATAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AGAGAAAAAA
Found at i:157575 original size:7 final size:7
Alignment explanation
Indices: 157563--157601 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
157553 TAAAATTTTT
157563 AAAAATA
1 AAAAATA
157570 AAAAATA
1 AAAAATA
157577 AAAAATAA
1 AAAAAT-A
157585 ATAAAATA
1 A-AAAATA
157593 AAAAATA
1 AAAAATA
157600 AA
1 AA
157602 TATTATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.70
8 4 0.13
9 5 0.17
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:157590 original size:16 final size:16
Alignment explanation
Indices: 157563--157603 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
157553 TAAAATTTTT
157563 AAAAAT-AA-AAAATA
1 AAAAATAAATAAAATA
157577 AAAAATAAATAAAATA
1 AAAAATAAATAAAATA
157593 AAAAATAAATA
1 AAAAATAAATA
157604 TTATTTTATC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.24
15 2 0.08
16 17 0.68
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAATAAATAAAATA
Found at i:157778 original size:141 final size:140
Alignment explanation
Indices: 157617--157989 Score: 457
Period size: 140 Copynumber: 2.7 Consensus size: 140
157607 TTTTATCACT
* * **
157617 AAATAAAAATTATTATCTTAATTTTTCAATACTTCTAATATTCCTATAATTTTCCAAAGGGGTAT
1 AAATAAAAATTATTATCTTAATTTTTCAAGA-TTCTAATATTCCTATGATTTTCCGTAGGGGTAT
* * * ** *
157682 AAAAATCTTCAAAACTTTTTGTATTTTTTTGGTTTTTCATTAAGGTACAAAATGAATTTTCTT-A
65 AGAAATCTTCAAAACTTTTTGTATCTTTTTAGTACTCCATTAAGGTACAAAATGAATTTT-TTGA
157746 AAATTAAAAATC
129 AAATTAAAAATC
* * * *
157758 AAATAAAAATTATTATCTTAATTTTTCAAGATGTCTAATATTCCCATGATATTCTGTAGGGGTAG
1 AAATAAAAATTATTATCTTAATTTTTCAAGAT-TCTAATATTCCTATGATTTTCCGTAGGGGTAT
* ** *
157823 AGAAATCTTCACAAC-TTTCATATCTTTTTAGTACTCCATTAAGGTACGAAATGAATTTTTTGAA
65 AGAAATCTTCAAAACTTTTTGTATCTTTTTAGTACTCCATTAAGGTACAAAATGAATTTTTTGAA
*
157887 AATTAAAAATT
130 AATTAAAAATC
* * * *
157898 AAATGAAAATTATTGTCTTAATTTTTCAAGATTTCT-ATATTCTTATGGTTTTCCGTA-GGGTAT
1 AAATAAAAATTATTATCTTAATTTTTCAAGA-TTCTAATATTCCTATGATTTTCCGTAGGGGTAT
* *
157961 AGAAATATACAAAACTTTTTGTATCTTTT
65 AGAAATCTTCAAAACTTTTTGTATCTTTT
157990 CGTTTCTTCG
Statistics
Matches: 196, Mismatches: 32, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
138 17 0.09
139 29 0.15
140 81 0.41
141 69 0.35
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (140 bp):
AAATAAAAATTATTATCTTAATTTTTCAAGATTCTAATATTCCTATGATTTTCCGTAGGGGTATA
GAAATCTTCAAAACTTTTTGTATCTTTTTAGTACTCCATTAAGGTACAAAATGAATTTTTTGAAA
ATTAAAAATC
Found at i:158599 original size:149 final size:148
Alignment explanation
Indices: 158269--158827 Score: 554
Period size: 155 Copynumber: 3.7 Consensus size: 148
158259 AGGTATCCCC
* * * * * ** **
158269 TAGGAGCATTTTCATAATTTTTCAAGAACCAATTCCTAATTTGTGACTGGTTTGCTTCTATGCCG
1 TAGGGGCATTTTCATAATTTTTCTAGAACCAAGTCCTAATTTATCACCAGTTCACTTCTATGCCG
* * * ** *
158334 AGGGTACGTTTTAGGCATAGGTTCGAATTTT-CTTTTTAAGTTCTTTTGGGTTACCAAATACTTT
66 AGGGTACATATTAGGCGTAGGTTCGTCTTTTCCTTTTTAAG-TCTTTTAGGTTACCAAATACTTT
*
158398 CATGTCGAAGGTATACCTA
130 CATGTCGAAGGCATACCTA
* * * * *
158417 TAGGGGTATTTTCATAA-TTTTCTTAGAACCAAGTTCTAATTCATCACCAGTTCACTTGTATGTC
1 TAGGGGCATTTTCATAATTTTTC-TAGAACCAAGTCCTAATTTATCACCAGTTCACTTCTATGCC
* * *
158481 GAGGGTACATATTAGGCGTAGGTTTG-CTTTTCCTTTTTAAGTCTTATAAGGTTACCGATATACT
65 GAGGGTACATATTAGGCGTAGGTTCGTCTTTTCCTTTTTAAGTCTT-TTAGGTTACC-AAATACT
*
158545 TTCATGTTGAAGGCATACCTA
128 TTCATGTCGAAGGCATACCTA
* * * ** * *
158566 TAGGGGCATTTTCATAATTTTTCTACAATCAAGTCCTAATTTGTCACTTGGTT-GCTTCTATGCG
1 TAGGGGCATTTTCATAATTTTTCTAGAACCAAGTCCTAATTTATCAC-CAGTTCACTTCTATGCC
* ** * *
158630 GAGGGTACACATTAGATGTAGGTTTGTTTTTCCTTTTCCTTTTTAAGTCTTTTAGGATTACCAGG
65 GAGGGTACATATTAGGCGTAGGTTCG----T-CTTTTCCTTTTTAAGTCTTTTAGG-TTACCA-A
*
158695 ATACTTTCATGTCGAAGGCATACCCA
123 ATACTTTCATGTCGAAGGCATACCTA
** * **
158721 TAAAGGCATTTTCATAATTTTTCTAGAACCGAGTCCTAATTTATCATTGAG-TCACTTCTATGCC
1 TAGGGGCATTTTCATAATTTTTCTAGAACCAAGTCCTAATTTATCA-CCAGTTCACTTCTATGCC
* *
158785 GAGGGTACATATTAGGTGTAGGTTCG-CTTTTTCTTTTTAAGTC
65 GAGGGTACATATTAGGCGTAGGTTCGTCTTTTCCTTTTTAAGTC
158828 CTCTAGGATA
Statistics
Matches: 337, Mismatches: 58, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
147 13 0.04
148 83 0.25
149 106 0.31
150 8 0.02
154 6 0.02
155 121 0.36
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.40
Consensus pattern (148 bp):
TAGGGGCATTTTCATAATTTTTCTAGAACCAAGTCCTAATTTATCACCAGTTCACTTCTATGCCG
AGGGTACATATTAGGCGTAGGTTCGTCTTTTCCTTTTTAAGTCTTTTAGGTTACCAAATACTTTC
ATGTCGAAGGCATACCTA
Found at i:162596 original size:13 final size:14
Alignment explanation
Indices: 162578--162615 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
162568 AATAAGAAAC
162578 AAAAGAAAAAAAG-
1 AAAAGAAAAAAAGA
*
162591 AAAAG-AAAAATGA
1 AAAAGAAAAAAAGA
162604 AAAAGAAAAAAA
1 AAAAGAAAAAAA
162616 AAGCATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 5 0.24
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAAAGA
Found at i:162612 original size:25 final size:26
Alignment explanation
Indices: 162578--162636 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
162568 AATAAGAAAC
162578 AAAAGAAAAAAAGAAAAG-A-AAAATGA
1 AAAAG-AAAAAA-AAAAGCATAAAATGA
*
162604 AAAAG-AAAAAAAAAGCATGAAATGA
1 AAAAGAAAAAAAAAAGCATAAAATGA
162629 AAAAGAAA
1 AAAAGAAA
162637 GTGCAAATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 5 0.17
24 6 0.21
25 11 0.38
26 7 0.24
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (26 bp):
AAAAGAAAAAAAAAAGCATAAAATGA
Done.