genome.fa.s1969.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1969
Parameters: 2 7 7 80 10 50 1000
Length:  27087

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5232--5288	29	2.0	29	100	0	114	33	10	21	35	1.87
6484--6537	19	2.8	19	91	2	81	29	14	18	37	1.91
6566--6592	13	2.1	13	100	0	54	29	14	14	40	1.86
10389--10413	13	1.9	13	100	0	50	36	16	16	32	1.90
10484--10508	13	1.9	13	100	0	50	32	16	16	36	1.90
10517--10637	52	2.3	52	97	0	224	34	18	18	28	1.94
17520--17591	1	72.0	1	77	0	72	88	11	0	0	0.50
17523--17591	14	4.6	15	85	10	81	88	11	0	0	0.52
17520--17591	12	5.8	12	79	10	83	88	11	0	0	0.50
17832--17863	16	2.0	16	93	0	55	84	9	6	0	0.78
18946--19035	27	3.1	27	77	20	99	22	36	15	25	1.93
18973--19691	66	10.9	66	85	9	900	20	37	12	29	1.89
18851--19698	33	26.1	32	81	13	818	20	37	12	29	1.90
19740--19845	32	3.3	31	86	11	151	29	36	18	15	1.92
19740--19837	34	2.9	34	91	7	157	28	36	18	16	1.92
19843--20363	49	10.5	49	83	5	624	24	25	17	32	1.97
19843--20431	99	5.9	100	87	8	781	24	25	16	32	1.96
19843--20364	192	2.7	193	90	4	805	24	25	17	32	1.97
20321--20608	122	2.3	124	94	1	501	25	25	13	36	1.92
20444--20963	169	3.1	170	96	1	936	24	24	13	36	1.92
21777--21801	13	1.9	13	100	0	50	36	16	16	32	1.90
21867--21891	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21900--22020	52	2.3	52	97	0	224	34	18	18	28	1.94
25677--25708	16	2.0	17	88	11	50	50	12	21	15	1.77

Tables:   1

The End!