Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold197
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 573162
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.31
Warning! 46325 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:6730 original size:29 final size:30
Alignment explanation
Indices: 6683--6766 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 30
6673 ATAAATATTT
*
6683 TTTATTTTTTTAATTA-TTTATTAATTAAAA
1 TTTATATTTTT-ATTATTTTATTAATTAAAA
* **
6713 TTTATATTTTTATTATTTTAATAATTAATG
1 TTTATATTTTTATTATTTTATTAATTAAAA
* *
6743 TTTATA-TATTAGTATTTTATTAAT
1 TTTATATTTTTATTATTTTATTAAT
6767 AAACATTAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
29 19 0.41
30 27 0.59
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (30 bp):
TTTATATTTTTATTATTTTATTAATTAAAA
Found at i:6848 original size:21 final size:21
Alignment explanation
Indices: 6809--6849 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
6799 AATAAAAAGT
6809 AATTTCAATATAAAAATATTAC
1 AATTTCAATAT-AAAATATTAC
6831 AATTTCTAATAT-AAATATT
1 AATTTC-AATATAAAATATT
6850 CTAATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 6 0.33
23 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTCAATATAAAATATTAC
Found at i:14436 original size:9 final size:8
Alignment explanation
Indices: 14407--14450 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
14397 TTTTTGATAT
*
14407 AAAATTAA
1 AAAATCAA
*
14415 AAAATAAA
1 AAAATCAA
14423 AAAATCAA
1 AAAATCAA
14431 AGAAAT-AA
1 A-AAATCAA
14439 AAAATCAA
1 AAAATCAA
14447 AAAA
1 AAAA
14451 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 4 0.12
8 24 0.75
9 4 0.12
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (8 bp):
AAAATCAA
Found at i:14440 original size:16 final size:15
Alignment explanation
Indices: 14407--14450 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
14397 TTTTTGATAT
*
14407 AAAATTAAAAAATAAA
1 AAAATCAAAAAAT-AA
14423 AAAATCAAAGAAATAA
1 AAAATCAAA-AAATAA
14439 AAAATCAAAAAA
1 AAAATCAAAAAA
14451 ATAATAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 3 0.12
16 19 0.73
17 4 0.15
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (15 bp):
AAAATCAAAAAATAA
Found at i:14451 original size:9 final size:8
Alignment explanation
Indices: 14407--14460 Score: 56
Period size: 9 Copynumber: 6.5 Consensus size: 8
14397 TTTTTGATAT
*
14407 AAAATTAA
1 AAAATAAA
14415 AAAATAAA
1 AAAATAAA
14423 AAAATCAAA
1 AAAAT-AAA
*
14432 GAAAT-AA
1 AAAATAAA
14439 AAAATCAAA
1 AAAAT-AAA
14448 AAAATAATA
1 AAAATAA-A
14457 AAAA
1 AAAA
14461 AAATGATGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
7 6 0.15
8 14 0.36
9 19 0.49
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.15
Consensus pattern (8 bp):
AAAATAAA
Found at i:14452 original size:16 final size:16
Alignment explanation
Indices: 14413--14459 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 16
14403 ATATAAAATT
14413 AAAAAATAAAAAAATCA
1 AAAAAAT-AAAAAATCA
*
14430 AAGAAATAAAAAATCA
1 AAAAAATAAAAAATCA
14446 AAAAAATAATAAAA
1 AAAAAATAA-AAAA
14460 AAAATGATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 17 0.63
17 10 0.37
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (16 bp):
AAAAAATAAAAAATCA
Found at i:14538 original size:64 final size:64
Alignment explanation
Indices: 14463--14582 Score: 204
Period size: 64 Copynumber: 1.9 Consensus size: 64
14453 AATAAAAAAA
* *
14463 ATGATGATGGCCGAATTAGTGGAGGTTCCACTAATTAAGCCACCTACACCACTAAAAGAAAATG
1 ATGATGATGGCCAAATTAATGGAGGTTCCACTAATTAAGCCACCTACACCACTAAAAGAAAATG
* *
14527 ATGATGATGGCCAAATTAATGGAGGTTCCATTAATTAAGCCACCTACACCATTAAA
1 ATGATGATGGCCAAATTAATGGAGGTTCCACTAATTAAGCCACCTACACCACTAAA
14583 GTGGCAAGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (64 bp):
ATGATGATGGCCAAATTAATGGAGGTTCCACTAATTAAGCCACCTACACCACTAAAAGAAAATG
Found at i:15434 original size:20 final size:19
Alignment explanation
Indices: 15409--15483 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 19
15399 TTTTCACAAT
15409 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATT-TTCA
*
15429 TTGTATCGATACATTACTCA
1 TTGTATCGATACATT-TTCA
15449 TTGTATCGATACATTTTGCA
1 TTGTATCGATACATTTT-CA
15469 TTGTATCGATACATT
1 TTGTATCGATACATT
15484 CAGGCATTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
19 1 0.02
20 50 0.98
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (19 bp):
TTGTATCGATACATTTTCA
Found at i:17859 original size:51 final size:52
Alignment explanation
Indices: 17788--17953 Score: 180
Period size: 51 Copynumber: 3.2 Consensus size: 52
17778 TTTCATCTCG
* * *
17788 GGGATACTCCAA-TCCTGATTTCATTTCCAAAACATCAAATTTT-CTTAATTA
1 GGGATACTCCAACTCC-GATTTTATTTCCAAAACATCAAATTTTCCATAATCA
* ** *
17839 GGGATACTCCAACTCCGATTTTATTTCTAAAACA-CCCATTTTCCATAATCG
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAAATTTTCCATAATCA
* * * *
17890 GGGATACTCCAACTCCGATTTTATTTTCAAAACATCGACTTTT-CACAATC-
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAAATTTTCCATAATCA
17940 GGGAATACTCCAAC
1 GGG-ATACTCCAAC
17954 CTCGTTATTT
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
50 9 0.09
51 81 0.83
52 8 0.08
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.33
Consensus pattern (52 bp):
GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAAATTTTCCATAATCA
Found at i:18060 original size:78 final size:77
Alignment explanation
Indices: 17889--18110 Score: 275
Period size: 78 Copynumber: 2.8 Consensus size: 77
17879 TTCCATAATC
* * * *
17889 GGGGATACTCCAACTCCGATTTTATTT-TCAAAACATCGACTTTTCACAATCGGGAATACTCCAA
1 GGGGATACTTCAAC-CCGATTTTATTTCT-AAAACATCAATTTTTCACAATCGGG-ATATTCCAA
17953 CCTCGTTATTTCCGA
63 CCTCGTTATTTCCGA
* *
17968 GGGGACACTTCAACCCTGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGATATTCCAACC
1 GGGGATACTTCAACCC-GATTTTATTTCTAAAACATCAATTTTTCACAATCGGGATATTCCAACC
**
18033 TCGTTATTTTTGA
65 TCGTTATTTCCGA
* * * *
18046 GGGGATACTTCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGAGGATATTCCAAC
1 GGGGATACTTCAA-CCCGATTTTATTTCTAAAACATCAATTTTTCACAATCG-GGATATTCCAAC
18111 TCCGATTTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
78 65 0.52
79 59 0.47
80 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (77 bp):
GGGGATACTTCAACCCGATTTTATTTCTAAAACATCAATTTTTCACAATCGGGATATTCCAACCT
CGTTATTTCCGA
Found at i:18130 original size:51 final size:51
Alignment explanation
Indices: 18048--18165 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
18038 ATTTTTGAGG
* *
18048 GGATACTTCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGA
1 GGATACTTCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAATCGA
* * * * *
18099 GGATA-TTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGG
1 GGATACTT-CAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAATCGA
*
18150 GGATACGTCAACCCCG
1 GGATACTTCAACCCCG
18166 TTATTTCATC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 2 0.04
51 53 0.95
52 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (51 bp):
GGATACTTCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAATCGA
Found at i:18208 original size:28 final size:28
Alignment explanation
Indices: 18148--18221 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
18138 TTTCACAATC
*
18148 GGGGATACGTCAACCCCGTTATTTCATCA
1 GGGGATACTTCAACCCCGTTATTTCA-CA
18177 -GGGATACTTCAACCCCGTTATTTC-CGA
1 GGGGATACTTCAACCCCGTTATTTCAC-A
*
18204 GGGGATACTCCAACCCCG
1 GGGGATACTTCAACCCCG
18222 GCTTTATTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 39 0.95
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (28 bp):
GGGGATACTTCAACCCCGTTATTTCACA
Found at i:18269 original size:51 final size:51
Alignment explanation
Indices: 18205--18318 Score: 174
Period size: 51 Copynumber: 2.2 Consensus size: 51
18195 TATTTCCGAG
*
18205 GGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCA
1 GGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCA
* * * **
18256 GGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATTG
1 GGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCA
18307 GGGATACTCCAA
1 GGGATACTCCAA
18319 TCCCATTATT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCA
Found at i:18310 original size:158 final size:158
Alignment explanation
Indices: 18019--18313 Score: 337
Period size: 158 Copynumber: 1.9 Consensus size: 158
18009 TTTCATAATC
* ** * * *
18019 GGGATATTCCAACCTCGTTATTTTTGAGGGGATACTTCAACCCCGGTTTTATTTCTAAAACACCA
1 GGGATATTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACACCA
* ** *
18084 ATTCTCCACAATCGAGGATATTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCG
66 ATTCTCCACAATCGAGGATATTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCACAATCG
18149 GGGATACGTCAACCCCGTTATTTCATCA
131 GGGATACGTCAACCCCGTTATTTCATCA
* **
18177 GGGATACTT-CAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATT
1 GGGATA-TTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACACC
* * * * * * *
18241 GATT-TCTCACAATC-AGGGATACTT-CAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATA
65 AATTCTC-CACAATCGA-GGATA-TTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCACA
*
18303 ATTGGGGATAC
127 ATCGGGGATAC
18314 TCCAATCCCA
Statistics
Matches: 112, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.03
158 105 0.94
159 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (158 bp):
GGGATATTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACACCA
ATTCTCCACAATCGAGGATATTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCACAATCG
GGGATACGTCAACCCCGTTATTTCATCA
Found at i:18508 original size:130 final size:129
Alignment explanation
Indices: 18177--18508 Score: 364
Period size: 130 Copynumber: 2.5 Consensus size: 129
18167 TATTTCATCA
* * * * *
18177 GGGATACTTCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTG
1 GGGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCTC-GTTTTATTTCTAAAATATTA
* * *
18242 ATTTCTCACAATCAGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATTG
65 ATTTCTCACAATCAGGGACACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATCG
* * * * * * * *
18307 GGGATACTCCAATCCCATTATTTTC-ACGGGAATACTCCAATCTCGATTTTATTTTTGAAACATC
1 GGGATACTTCAACCCCGTTATTTTCGA-GGGGATACTCCAACCTCG-TTTTATTTCTAAAATAT-
* * * ** * *
18371 TATTTTCT-ATAATCGGGGACACTTCAACCCTTGCCTTATTTCT-AAATCATTGATTTTTTACAA
63 TAATTTCTCACAATCAGGGACACTTCAACCCCGGCCTTATTTCTAAAAT-ATTGATTTCTCACAA
18434 TCG
127 TCG
*
18437 GGGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGTTATTATCTCTAAAATATTA
1 GGGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGTT-TTATTTCTAAAATATT-
18502 AATTTCT
64 AATTTCT
18509 TGTCGGGAGA
Statistics
Matches: 162, Mismatches: 33, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
129 9 0.06
130 146 0.90
131 7 0.04
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (129 bp):
GGGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGTTTTATTTCTAAAATATTAA
TTTCTCACAATCAGGGACACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATCG
Found at i:26716 original size:19 final size:19
Alignment explanation
Indices: 26673--26726 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
26663 AAATTTCCAG
*
26673 ATGTATCGATACAATGATAA
1 ATGTATCGATAC-ATTATAA
*
26693 ATGTATCGATACATTATTA
1 ATGTATCGATACATTATAA
26712 ATGTATCGATACATT
1 ATGTATCGATACATT
26727 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 20 0.62
20 12 0.38
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (19 bp):
ATGTATCGATACATTATAA
Found at i:27684 original size:19 final size:20
Alignment explanation
Indices: 27640--27694 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
27630 AAATGAAAAG
27640 AAAAAC-AAAAAAAAAGTGC
1 AAAAACAAAAAAAAAAGTGC
*
27659 AAAAACAAAAAAAAAAG-GG
1 AAAAACAAAAAAAAAAGTGC
*
27678 AACAACAAAAATAAAAA
1 AAAAACAAAAA-AAAAA
27695 AACAAGGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.78, C:0.09, G:0.09, T:0.04
Consensus pattern (20 bp):
AAAAACAAAAAAAAAAGTGC
Found at i:27909 original size:13 final size:14
Alignment explanation
Indices: 27891--27924 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
27881 GTTCTTTTAG
27891 CAAAAAAA-AAGCA
1 CAAAAAAAGAAGCA
27904 CAAAAAAAGAAGCA
1 CAAAAAAAGAAGCA
27918 -AAAAAAA
1 CAAAAAAA
27925 TCCTTTTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.79, C:0.12, G:0.09, T:0.00
Consensus pattern (14 bp):
CAAAAAAAGAAGCA
Found at i:28984 original size:66 final size:65
Alignment explanation
Indices: 28871--28996 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 65
28861 TATTTTTCCT
* * *
28871 TTTCAAAAGCCTACAAGTCAGTGGCACCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTAATC
1 TTTCAAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGCCA-CCTTTTAATC
28936 C
65 C
* * * *
28937 TTTCAAAAGCCCACGAG-CTAGTGGCACTCTTTTAAAGCCCACGAGTCAGTGCCACCTTTT
1 TTTCAAAAGCCCACAAGTC-AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGCCACCTTTT
28997 CAAAAGCTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
65 7 0.13
66 45 0.87
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (65 bp):
TTTCAAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGCCACCTTTTAATCC
Found at i:29012 original size:29 final size:28
Alignment explanation
Indices: 28937--29088 Score: 112
Period size: 29 Copynumber: 5.2 Consensus size: 28
28927 CTTTTAATCC
*
28937 TTTCAAAAGCCCACGAG-CTAGTGGCACTCT
1 TTTC-AAAGCCCACAAGTC-AGTGGCAC-CT
* *
28967 TTT-AAAGCCCACGAGTCAGTGCCACCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCT
* *
28994 TTTCAAAAGCTCACAAGTCAGTGGTACCCT
1 TTTC-AAAGCCCACAAGTCAGTGGCA-CCT
* *
29024 TTTTAAAGCTTACACAAGTCAGTGGCAACC-
1 TTTCAAAGC--CCACAAGTCAGTGGC-ACCT
* * *
29054 TCTCAAAAGCCCATAAGTCAGTGGCACAT
1 TTTC-AAAGCCCACAAGTCAGTGGCACCT
29083 TTTCAA
1 TTTCAA
29089 TCTTTTCAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
27 5 0.05
28 23 0.23
29 39 0.39
30 11 0.11
31 20 0.20
32 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCT
Found at i:29164 original size:155 final size:154
Alignment explanation
Indices: 28883--29240 Score: 409
Period size: 155 Copynumber: 2.3 Consensus size: 154
28873 TCAAAAGCCT
* * * *
28883 ACAAGTCAGTGGCACCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTAATCCTTTCAAAAGCC
1 ACAAGTCAGTGGCAACCTCTCAAAGCCCACAAGTCAGTGGCATCATTTTAATCCTTTCAAAAGCC
* * * *
28948 CACGAGCTAGTGGCACTCTTTTAAAGCCCACGAGTCAGTGCCACCTTTTCAAAAGCTCACAAGTC
66 CACAAGCTAGTGGCACCCTTTTAAAGCCCACAAGTCAATGCCACCTTTTCAAAAGCTCACAAGTC
29013 AGTGGTACCCTTTTTAAAGCTTAC
131 AGTGGTACCCTTTTTAAAGCTTAC
* *
29037 ACAAGTCAGTGGCAACCTCTCAAAAGCCCATAAGTCAGTGGCA-CATTTTCAATCTTTTCAAAAG
1 ACAAGTCAGTGGCAACCTCTC-AAAGCCCACAAGTCAGTGGCATCATTTT-AATCCTTTCAAAAG
* * * **
29101 CCCACAAGTTAGTGGCACCCTTTTCAAAGCCCACAAGTCAATGGCGCCTTTTTTAAAGC-CACAA
64 CCCACAAGCTAGTGGCACCCTTTT-AAAGCCCACAAGTCAATGCCACCTTTTCAAAAGCTCACAA
** ** *
29165 GTCAGTGGCGCCCTTTCAAAAGC--CC
128 GTCAGTGGTACCCTTTTTAAAGCTTAC
* * * * * * * *
29190 ATAAGTAAGTGACACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTTAA
1 ACAAGTCAGTGGCAACCTCTCAAAGCCCACAAGTCAGTGGCATCATTTTAA
29241 AACCCACAAG
Statistics
Matches: 172, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
152 21 0.12
153 22 0.13
154 24 0.14
155 77 0.45
156 28 0.16
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (154 bp):
ACAAGTCAGTGGCAACCTCTCAAAGCCCACAAGTCAGTGGCATCATTTTAATCCTTTCAAAAGCC
CACAAGCTAGTGGCACCCTTTTAAAGCCCACAAGTCAATGCCACCTTTTCAAAAGCTCACAAGTC
AGTGGTACCCTTTTTAAAGCTTAC
Found at i:29596 original size:28 final size:28
Alignment explanation
Indices: 29090--30958 Score: 1017
Period size: 28 Copynumber: 65.8 Consensus size: 28
29080 CATTTTCAAT
*
29090 CTTTTCAAAAGCCCACAAGTTAGTGGCACC
1 CTTTTC-AAAGCCCACAAGTCAGTGGCA-C
* *
29120 CTTTTCAAAGCCCACAAGTCAATGGCGC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
29148 CTTTTTTAAAG-CCACAAGTCAGTGGCGC
1 C-TTTTCAAAGCCCACAAGTCAGTGGCAC
* * * *
29176 CCTTTCAAAAGCCCATAAGTAAGTGACAC
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
* *
29205 CCTTTCAAAGCCCACAAGTTAGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* *
29234 CTTTT-AAAACCCACAAGTCAGTGGTACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
*
29262 CTTTTTAAAGCCCACAAG-CTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTC-AGTGGCAC
* * * *
29290 CCTTTCAAAAGCCCACAAGCCAATTGCA-
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
* * * *
29318 CTATTTTAAAGTCCACAAGTTAGTGGCATA
1 CT-TTTCAAAGCCCACAAGTCAGTGGCA-C
* * *
29348 TTTTTTAAAGCCTACAAG-CTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTC-AGTGGCAC
* *
29376 CCTTTCAAAAGCTCACAAGTCAGTGGCACC
1 CTTTTC-AAAGCCCACAAGTCAGTGGCA-C
*
29406 CTTTT-AAAGCCCACAAGCCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
29433 TCTTTTCAAAGCCCACAAGCCAGTGGCGC
1 -CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
29462 CCTTTCAAAAGCCCACAAGTCAGTGGCA-
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
* * *
29490 CTATTTTAAAGCCTACAAGTTAGTGGCAC
1 CT-TTTCAAAGCCCACAAGTCAGTGGCAC
*
29519 TTTTTTCAAAGCCCACAAG-CTAGTGGCAC
1 -CTTTTCAAAGCCCACAAGTC-AGTGGCAC
**
29548 CTTTTCAAAAGCCCACAAGTCAGTAACAC
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
* *
29577 CTTTTTAAAGCCCACGAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* * * *
29606 C-TTTCAACGCCCACGAGTAAGTAGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
29633 CTTTTCAAAGCCCATAAGTTAGTAGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
29661 CTTTTCAAAGCTCACAAGTTAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
29689 CTATTCAAAGCCCATAAGTTAGTGGCA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
29716 TTCTTTCAAAAGCCCACAAGTTAGTGGCAC
1 CT-TTTC-AAAGCCCACAAGTCAGTGGCAC
* *
29746 CCTTTCAAAACCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * * *
29774 CCTTTCAAAACCCACACGTCAATGGTA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
29801 GTCTTTCAAAGCCCACAAGTCACT-ACAC
1 CT-TTTCAAAGCCCACAAGTCAGTGGCAC
* * *
29829 CTTTTCAGAGCCCATAAGTTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
29857 CCTTTCAAAGCCCACAAGTTAGTGGCAG
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
29885 CTTTTCAAAGCCCACAAGTTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
29913 CCTTTCAGAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
29941 CCTTCCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * *
29969 CTTTCCAAAGCCCACAAGAT-GGCGACAC
1 CTTTTCAAAGCCCACAAG-TCAGTGGCAC
* ** * *
29997 CCTTTCAAAGTGCACATGTCGGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
30025 CCTTTCAAAGCCCACAAGTCGGTAGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* * * *
30054 C-TTTCAAAACCCATAAGTCGGTGGTAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
30081 ATTTT-GAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
30108 CCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
30136 C-CTTCTAAAGCCCACAAGAT-AGTAGCATC
1 CTTTTC-AAAGCCCACAAG-TCAGTGGCA-C
30165 C-TTTCAAAAGCCCAC-A---AGT--CAC
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
*
30187 C-TTTCAAAGCCCACAACTCCA-TGGCACC
1 CTTTTCAAAGCCCACAAGT-CAGTGGCA-C
* * * * * *
30215 CTTTTTAAA-TCCATAACTCCGTGGCTCTC
1 CTTTTCAAAGCCCACAAGTCAGTGG--CAC
* * * * *
30244 CTTTT-TAGGTCCACAACTCTGTGGCACCTTTC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-----C
* * * *
30276 CTTTTTAAAGTCAACAACTCTA-TGGCAC
1 CTTTTCAAAGCCCACAAGTC-AGTGGCAC
* * * *
30304 CTTTCTCTTTTAAAGTCTACAACTCTGTGGCAC
1 CTTT-TC----AAAGCCCACAAGTCAGTGGCAC
* * * * * *
30337 ATTTCCTTTCTAAAGTCCATAACTCCGTGGCATATT
1 ----CTTTTC-AAAGCCCACAAGTCAGTGGC--A-C
* * *** * ** *
30373 TTCTTTCAAAGTCTGTAATTCTTTGGTAC
1 CT-TTTCAAAGCCCACAAGTCAGTGGCAC
* *
30402 TTCTTTT--AAGTCCACAACTCCA-T--CAC
1 --CTTTTCAAAGCCCACAAGT-CAGTGGCAC
** * * *
30428 CTTTTCTTTTAAAGTTCATAACTCTGTGGCAACC
1 CTTTTC----AAAGCCCACAAGTCAGTGGC-A-C
* * * *
30462 CTTTT-TAAGTCCACAACTCCGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
** *
30490 TCTTTTCAAAGTTCACAACTCCA-TGGCACC
1 -CTTTTCAAAGCCCACAAGT-CAGTGGCA-C
* *
30520 TTCTCTTTCAAAGCCTACAAGTTAGTGGCAC
1 --CT-TTTCAAAGCCCACAAGTCAGTGGCAC
* * *
30551 CCTTTCAAAGCCCATAAGTTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
30579 CTTTTCAAAGCCCACAAGTCAATGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
30607 CCTTTCAGAG-CCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
30634 CCTTTCATAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * *
30662 C-CTTCTAAAGCCCATAAGTTAGTGGCAG
1 CTTTTC-AAAGCCCACAAGTCAGTGGCAC
*
30690 CTTTCCAAAGCCCACAAGTC-GATAGG-AC
1 CTTTTCAAAGCCCACAAGTCAG-T-GGCAC
* * * *
30718 CCTTTCAAAGCCCACAAATCGGTAAG-AC
1 CTTTTCAAAGCCCACAAGTCAGT-GGCAC
* * * * * *
30746 CCTTTCAAAGCTCACAAATCGGTAGCATA
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* * *
30775 C-TTTCAAAGCCTACAAGTCGGTGGTAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
30802 CTTTT-GAAGCCCACAAGTCGGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
30829 CTTTTCAAAGCCCATAAGTCAGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* *
30858 CTTTT-AGAGCCCACAAGTCAGTGGTA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
30884 --TTT-ATAGCCCACAAGTCAATGGTAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * * * ** *
30909 CCTTCCAAAGCTCGCAAGACAGTAACAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
30937 CTTTTCAAAAGCCCACAAGTCA
1 CTTTTC-AAAGCCCACAAGTCA
30959 CCTTTCAAAG
Statistics
Matches: 1473, Mismatches: 256, Indels: 221
0.76 0.13 0.11
Matches are distributed among these distances:
21 9 0.01
22 7 0.00
23 2 0.00
24 27 0.02
25 4 0.00
26 3 0.00
27 112 0.08
28 812 0.55
29 331 0.22
30 50 0.03
31 7 0.00
32 39 0.03
33 58 0.04
34 6 0.00
35 1 0.00
36 2 0.00
37 3 0.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:30256 original size:29 final size:28
Alignment explanation
Indices: 30197--30271 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
30187 CTTTCAAAGC
*
30197 CCACAACTCCATGGCACCCTTTTTAAAT
1 CCACAACTCCGTGGCACCCTTTTTAAAT
* * **
30225 CCATAACTCCGTGGCTCTCCTTTTTAGGT
1 CCACAACTCCGTGGCAC-CCTTTTTAAAT
*
30254 CCACAACTCTGTGGCACC
1 CCACAACTCCGTGGCACC
30272 TTTCCTTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 15 0.39
29 23 0.61
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.29
Consensus pattern (28 bp):
CCACAACTCCGTGGCACCCTTTTTAAAT
Found at i:30302 original size:33 final size:33
Alignment explanation
Indices: 30242--30368 Score: 150
Period size: 33 Copynumber: 3.9 Consensus size: 33
30232 TCCGTGGCTC
* *
30242 TCCTTTTT-AGGTCCACAACTCTGTGGCACCTT
1 TCCTTTTTAAAGTCAACAACTCTGTGGCACCTT
*
30274 TCCTTTTTAAAGTCAACAACTCTATGGCACCTT
1 TCCTTTTTAAAGTCAACAACTCTGTGGCACCTT
* *
30307 T-CTCTTTTAAAGTCTACAACTCTGTGGCACATT
1 TCCT-TTTTAAAGTCAACAACTCTGTGGCACCTT
* * * *
30340 TCCTTTCTAAAGTCCATAACTCCGTGGCA
1 TCCTTTTTAAAGTCAACAACTCTGTGGCA
30369 TATTTTCTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
32 10 0.12
33 70 0.85
34 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (33 bp):
TCCTTTTTAAAGTCAACAACTCTGTGGCACCTT
Found at i:30368 original size:66 final size:63
Alignment explanation
Indices: 30256--30490 Score: 207
Period size: 66 Copynumber: 3.8 Consensus size: 63
30246 TTTTAGGTCC
* * **
30256 ACAACTCTGTGGCACCTTTCCTTTTTAAAGTCAACAACTCTATGGCACCTTTCTCTTTTAAAGTC
1 ACAACTCTGTGGCA-CATTCC-TTTTAAAGTCCACAACTCCGTGGCACCTTT-TCTTTTAAAGTC
30321 T
63 T
* ** *
30322 ACAACTCTGTGGCACATTTCCTTTCTAAAGTCCATAACTCCGTGGCATATTTTCTTTCAAAGTCT
1 ACAACTCTGTGGCACA-TTCCTTT-TAAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCT
** * * * *
30387 GTAATTCTTTGGTAC-TT-CTTTT-AAGTCCACAACTCCAT--CACCTTTTCTTTTAAAGT-T
1 ACAACTCTGTGGCACATTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCT
* * *
30444 CATAACTCTGTGGCA-A-CCCTTTTTAAGTCCACAACTCCGTGGCACCT
1 -ACAACTCTGTGGCACATTCCTTTTAAAGTCCACAACTCCGTGGCACCT
30491 CTTTTCAAAG
Statistics
Matches: 137, Mismatches: 24, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
57 1 0.01
58 30 0.22
59 15 0.11
60 14 0.10
61 6 0.04
62 4 0.03
63 2 0.01
65 26 0.19
66 39 0.28
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.37
Consensus pattern (63 bp):
ACAACTCTGTGGCACATTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTCTTTTAAAGTCT
Found at i:30379 original size:33 final size:33
Alignment explanation
Indices: 30252--30385 Score: 128
Period size: 33 Copynumber: 4.1 Consensus size: 33
30242 TCCTTTTTAG
* * * *
30252 GTCCACAACTCTGTGGCACCTTTCCTTTTTAAA
1 GTCCACAACTCCGTGGCACATTTTCTTTCTAAA
* ** *
30285 GTCAACAACTCTATGGCACCTTTCTCTTT-TAAA
1 GTCCACAACTCCGTGGCACATTT-TCTTTCTAAA
* * *
30318 GTCTACAACTCTGTGGCACATTTCCTTTCTAAA
1 GTCCACAACTCCGTGGCACATTTTCTTTCTAAA
* *
30351 GTCCATAACTCCGTGGCATATTTTCTTTC-AAA
1 GTCCACAACTCCGTGGCACATTTTCTTTCTAAA
30383 GTC
1 GTC
30386 TGTAATTCTT
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
32 10 0.11
33 73 0.84
34 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.37
Consensus pattern (33 bp):
GTCCACAACTCCGTGGCACATTTTCTTTCTAAA
Found at i:30465 original size:29 final size:29
Alignment explanation
Indices: 30432--30520 Score: 108
Period size: 29 Copynumber: 3.0 Consensus size: 29
30422 CATCACCTTT
* *
30432 TCTTTTAAAGTTCATAACTCTGTGGCAACC
1 TCTTTTAAAGTTCACAACTCCGTGGC-ACC
* *
30462 -CTTTTTAAGTCCACAACTCCGTGGCACC
1 TCTTTTAAAGTTCACAACTCCGTGGCACC
*
30490 TCTTTTCAAAGTTCACAACTCCATGGCACC
1 TCTTTT-AAAGTTCACAACTCCGTGGCACC
30520 T
1 T
30521 TCTCTTTCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.06
29 26 0.52
30 21 0.42
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (29 bp):
TCTTTTAAAGTTCACAACTCCGTGGCACC
Found at i:30468 original size:30 final size:30
Alignment explanation
Indices: 30434--30520 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
30424 TCACCTTTTC
* *
30434 TTTTAAAGTTCATAACTCTGTGGCAACC-CT
1 TTTTAAAGTTCACAACTCCGTGGC-ACCTCT
*
30464 TTTT-AAGTCCACAACTCCGTGGCACCTCT
1 TTTTAAAGTTCACAACTCCGTGGCACCTCT
* *
30493 TTTCAAAGTTCACAACTCCATGGCACCT
1 TTTTAAAGTTCACAACTCCGTGGCACCT
30521 TCTCTTTCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.06
29 21 0.43
30 25 0.51
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (30 bp):
TTTTAAAGTTCACAACTCCGTGGCACCTCT
Found at i:30517 original size:59 final size:57
Alignment explanation
Indices: 30405--30517 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 57
30395 TTGGTACTTC
* **
30405 TTTTAAGTCCACAACTCCATCACCTTTTCTTTTAAAGTTCATAACTCTGTGGCAACCCT
1 TTTTAAGTCCACAACTCCATCACC--TTCTTTTAAAGTTCACAACTCCATGGCAACCCT
*
30464 TTTTAAGTCCACAACTCCGTGGCACC-TCTTTTCAAAGTTCACAACTCCATGGCA
1 TTTTAAGTCCACAACTCCAT--CACCTTCTTTT-AAAGTTCACAACTCCATGGCA
30518 CCTTCTCTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
58 6 0.13
59 37 0.79
61 4 0.09
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (57 bp):
TTTTAAGTCCACAACTCCATCACCTTCTTTTAAAGTTCACAACTCCATGGCAACCCT
Found at i:30673 original size:111 final size:112
Alignment explanation
Indices: 30524--30881 Score: 411
Period size: 111 Copynumber: 3.2 Consensus size: 112
30514 GGCACCTTCT
* *
30524 CTTTCAAAGCCTACAAGTTAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGCACCTTTTCAAAG
1 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGCACCTTTTCAAAG
* *
30589 CCCACAAGTCAATGGCACCCTTTCAGAG-CCACAAGTCAGTGGCACC
66 CCCACAAGTCGATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
30635 CTTTCATAGCCCACAAGTCAGTGGCACCC-TTCTAAAGCCCATAAGTTAGTGGCAGCTTTCCAAA
1 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC-AAAGCCCATAAGTTAGTGGCACCTTTTCAAA
* * *
30699 GCCCACAAGTCGATAGG-ACCCTTTCAAAGCCCACAAATCGGTAAG-ACC
65 GCCCACAAGTCGAT-GGCACCCTTTCAAAGCCCACAAGTCAGT-GGCACC
* * * * ** * * ** * *
30747 CTTTCAAAGCTCACAAATCGGTAGCATACTTTCAAAGCCTACAAGTCGGTGGTACCTTTT-GAAG
1 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGCACCTTTTCAAAG
* * *
30811 CCCACAAGTCGGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCACC
66 CCCACAAGTCGATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACC
* *
30858 CTTTTAGAGCCCACAAGTCAGTGG
1 CTTTCAAAGCCCACAAGTCAGTGG
30882 TATTTATAGC
Statistics
Matches: 203, Mismatches: 37, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
110 6 0.03
111 136 0.67
112 57 0.28
113 4 0.02
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (112 bp):
CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGCACCTTTTCAAAG
CCCACAAGTCGATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACC
Found at i:30892 original size:24 final size:24
Alignment explanation
Indices: 30860--30907 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
30850 GTGGCACCCT
*
30860 TTTAGAGCCCACAAGTCAGTGGTA
1 TTTAGAGCCCACAAGTCAATGGTA
*
30884 TTTATAGCCCACAAGTCAATGGTA
1 TTTAGAGCCCACAAGTCAATGGTA
30908 CCCTTCCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (24 bp):
TTTAGAGCCCACAAGTCAATGGTA
Found at i:31056 original size:32 final size:31
Alignment explanation
Indices: 30974--31176 Score: 156
Period size: 29 Copynumber: 6.7 Consensus size: 31
30964 CAAAGCCTAT
*
30974 AACTCCGTGGCACC--CC-TTTTAAATTCAC
1 AACTCCGTGGCACCTTCCTTTTTAAATCCAC
* *
31002 AACTCCATGGC-TC-TCCTTTTTAAATCCAC
1 AACTCCGTGGCACCTTCCTTTTTAAATCCAC
*
31031 AACTCCGTGGCACCTTTCCTTTTTAAGTCCAC
1 AACTCCGTGGCACC-TTCCTTTTTAAATCCAC
* * * *
31063 AACTTCGTGGCACATT-TTCTTTTAAAGTCCAT
1 AACTCCGTGGCACCTTCCT-TTTTAAA-TCCAC
* * *
31095 AACTCCGTGGTAAC--CCTTTTTAAGTCCAC
1 AACTCCGTGGCACCTTCCTTTTTAAATCCAC
* * *
31124 AACTCCATGGAACC-T-CTTTTCAAAGTCCAC
1 AACTCCGTGGCACCTTCCTTTTTAAA-TCCAC
*
31154 AACTCCATGGCACCTTCTCTTTT
1 AACTCCGTGGCACCTTC-CTTTT
31177 AAAGCCAACA
Statistics
Matches: 138, Mismatches: 24, Indels: 21
0.75 0.13 0.11
Matches are distributed among these distances:
27 1 0.01
28 12 0.09
29 43 0.31
30 26 0.19
31 10 0.07
32 41 0.30
33 5 0.04
ACGTcount: A:0.24, C:0.32, G:0.11, T:0.33
Consensus pattern (31 bp):
AACTCCGTGGCACCTTCCTTTTTAAATCCAC
Found at i:31177 original size:61 final size:59
Alignment explanation
Indices: 30961--31178 Score: 171
Period size: 61 Copynumber: 3.6 Consensus size: 59
30951 ACAAGTCACC
* * *
30961 TTTCAAAG-CCTATAACTCCGTGGCACCC-CTTTTAAATTCACAACTCCATGG--CTCTCCT
1 TTTCAAAGTCC-ACAACTCCGTGGCACCCTCTTTTAAGTCCACAACTCCATGGAAC-CT-CT
* * * * **
31019 TTTTAAA-TCCACAACTCCGTGGCACCTTTCCTTTTTAAGTCCACAACTTCGTGGCACATTTTCT
1 TTTCAAAGTCCACAACTCCGTGGCACC-CT-C-TTTTAAGTCCACAACTCCATGG-A-A-CCTCT
* *
31083 TTT-AAAGTCCATAACTCCGTGGTAACCCT-TTTTAAGTCCACAACTCCATGGAACCTCT
1 TTTCAAAGTCCACAACTCCGTGG-CACCCTCTTTTAAGTCCACAACTCCATGGAACCTCT
*
31141 TTTCAAAGTCCACAACTCCATGGCACCTTCTCTTTTAA
1 TTTCAAAGTCCACAACTCCGTGGCACC--CTCTTTTAA
31179 AGCCAACACA
Statistics
Matches: 125, Mismatches: 19, Indels: 29
0.72 0.11 0.17
Matches are distributed among these distances:
57 15 0.12
58 17 0.14
59 18 0.14
60 4 0.03
61 44 0.35
63 3 0.02
64 20 0.16
65 4 0.03
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (59 bp):
TTTCAAAGTCCACAACTCCGTGGCACCCTCTTTTAAGTCCACAACTCCATGGAACCTCT
Found at i:31261 original size:62 final size:62
Alignment explanation
Indices: 31184--31317 Score: 153
Period size: 62 Copynumber: 2.2 Consensus size: 62
31174 TTTAAAGCCA
* * * * * *
31184 ACACAAGTTGGTGGCACCCTAATCAAAGT-TCACACGAGTTGGCGACACTTGAGTCAAAACCC
1 ACACAAGTTGCTGGCACCATAATCAAA-TCCCACACAAGTTGGCGACACCTAAGTCAAAACCC
* * * *
31246 ACACAAGTTGCTGGCACCATAGTCAAATCCCGCACAAGTTGGCGGCACCTAAGTCAAAGCCC
1 ACACAAGTTGCTGGCACCATAATCAAATCCCACACAAGTTGGCGACACCTAAGTCAAAACCC
*
31308 GCACAAGTTG
1 ACACAAGTTG
31318 ACAGCACCTT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
61 1 0.02
62 59 0.98
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (62 bp):
ACACAAGTTGCTGGCACCATAATCAAATCCCACACAAGTTGGCGACACCTAAGTCAAAACCC
Found at i:31270 original size:31 final size:29
Alignment explanation
Indices: 31177--31341 Score: 123
Period size: 31 Copynumber: 5.3 Consensus size: 29
31167 CTTCTCTTTT
* * *
31177 AAAGCCAACACAAGTTGGTGGCACCCTAATC
1 AAAGCCCACACAAGTT-GCGGCA-CCTAGTC
** * * *
31208 AAAGTTCACACGAGTTGGCGACACTTGAGTC
1 AAAGCCCACACAAGTT-GCGGCACCT-AGTC
*
31239 AAAACCCACACAAGTTGCTGGCACCATAGTC
1 AAAGCCCACACAAGTTGC-GGCACC-TAGTC
* *
31270 AAATCCCGCACAAGTTGGCGGCACCTAAGTC
1 AAAGCCCACACAAGTT-GCGGCACCT-AGTC
* *
31301 AAAGCCCGCACAAGTTGACAGCACCTTAGTC
1 AAAGCCCACACAAGTTG-CGGCACC-TAGTC
31332 AAAGCCCACA
1 AAAGCCCACA
31342 TGAGCACCTT
Statistics
Matches: 108, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
30 6 0.06
31 98 0.91
32 4 0.04
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.16
Consensus pattern (29 bp):
AAAGCCCACACAAGTTGCGGCACCTAGTC
Found at i:32165 original size:8 final size:8
Alignment explanation
Indices: 32154--32200 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
32144 TATAAAATTT
32154 AAAAATAA
1 AAAAATAA
32162 AAAAATTAA
1 AAAAA-TAA
* *
32171 AGAAATCA
1 AAAAATAA
*
32179 AAAAATCA
1 AAAAATAA
32187 AAAAATAA
1 AAAAATAA
32195 AAAAAT
1 AAAAAT
32201 TCAAAAAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
8 27 0.79
9 7 0.21
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (8 bp):
AAAAATAA
Found at i:32176 original size:25 final size:24
Alignment explanation
Indices: 32147--32208 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
32137 TTTTTGATAT
*
32147 AAAATTTAAAAATAAAAAAATTAAA
1 AAAATTAAAAAATAAAAAAA-TAAA
* * *
32172 GAAATCAAAAAATCAAAAAATAAA
1 AAAATTAAAAAATAAAAAAATAAA
32196 AAAATTCAAAAAA
1 AAAATT-AAAAAA
32209 AGATGATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 8 0.27
25 22 0.73
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.18
Consensus pattern (24 bp):
AAAATTAAAAAATAAAAAAATAAA
Found at i:32204 original size:17 final size:17
Alignment explanation
Indices: 32154--32208 Score: 78
Period size: 17 Copynumber: 3.3 Consensus size: 17
32144 TATAAAATTT
32154 AAAAATAAAAAAATT-A
1 AAAAATAAAAAAATTCA
*
32170 AAGAAATCAAAAAA-TCA
1 AA-AAATAAAAAAATTCA
32187 AAAAATAAAAAAATTCA
1 AAAAATAAAAAAATTCA
32204 AAAAA
1 AAAAA
32209 AGATGATGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 13 0.38
17 21 0.62
ACGTcount: A:0.78, C:0.05, G:0.02, T:0.15
Consensus pattern (17 bp):
AAAAATAAAAAAATTCA
Found at i:33886 original size:31 final size:33
Alignment explanation
Indices: 33845--34048 Score: 219
Period size: 33 Copynumber: 6.3 Consensus size: 33
33835 AATTCTTCAA
33845 ATCTCTTTTCTTCAAAGTCCACGACT-TAGTGGC
1 ATCT-TTTTCTTCAAAGTCCACGACTCTAGTGGC
33878 ATC-TTTTCTTCAAAGTCCACGACT-TAGTGGC
1 ATCTTTTTCTTCAAAGTCCACGACTCTAGTGGC
** *
33909 ATC-CCTTC-CCAAAGTCCACGACTCTA-TGGC
1 ATCTTTTTCTTCAAAGTCCACGACTCTAGTGGC
*
33939 ACCTTTTTCTTTCAAAGTCCACGACTCT-GTGGC
1 ATCTTTTTC-TTCAAAGTCCACGACTCTAGTGGC
*
33972 ACCTTTTTCTTTCAAAGTCCACGACTCT-GTGGC
1 ATCTTTTTC-TTCAAAGTCCACGACTCTAGTGGC
** *
34005 ACTCTTTTTCCTTTTAAGTCCACGACTCT-GTGTC
1 A-TCTTTTT-CTTCAAAGTCCACGACTCTAGTGGC
34039 ACTCTTTTTC
1 A-TCTTTTTC
34049 CTTTTAAGTC
Statistics
Matches: 153, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
30 20 0.13
31 39 0.25
33 58 0.38
34 35 0.23
35 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.37
Consensus pattern (33 bp):
ATCTTTTTCTTCAAAGTCCACGACTCTAGTGGC
Found at i:33924 original size:30 final size:31
Alignment explanation
Indices: 33852--33939 Score: 117
Period size: 31 Copynumber: 2.9 Consensus size: 31
33842 CAAATCTCTT
* **
33852 TTCTTCAAAGTCCACGACTTAGTGGCATCTT
1 TTCTCCAAAGTCCACGACTTAGTGGCATCCC
*
33883 TTCTTCAAAGTCCACGACTTAGTGGCATCCC
1 TTCTCCAAAGTCCACGACTTAGTGGCATCCC
33914 TTC-CCAAAGTCCACGACTCTA-TGGCA
1 TTCTCCAAAGTCCACGACT-TAGTGGCA
33940 CCTTTTTCTT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
30 19 0.36
31 34 0.64
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (31 bp):
TTCTCCAAAGTCCACGACTTAGTGGCATCCC
Found at i:34024 original size:34 final size:33
Alignment explanation
Indices: 33920--35451 Score: 1300
Period size: 34 Copynumber: 45.8 Consensus size: 33
33910 TCCCTTCCCA
* * *
33920 AAGTCCACGACTCTATGGCACCTTTTT-CTTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTT-T
* *
33953 AAGTCCACGACTCTGTGGCACCTTTTT-CTTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTT-T
*
33986 AAGTCCACGACTCTGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
* *
34020 AAGTCCACGACTCTGTGTCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
* * *
34054 AAGTCTACAACTCCGTAGCACCCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
*
34088 AAGTCCACAACTCTGTGGCACCCTTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
* *
34122 AAG-CCTACAACTCTGTGGCACCCTCTTCTCTTTT
1 AAGTCC-ACAACTCTGTGGCACCTTTTTC-CTTTT
* * *
34156 AAGCCCACAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* * * *
34189 AAGCCCATAACTCCGTGGCACC-TTTTCTTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
** * *
34221 AAGTCCATGACTTTGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* * *
34254 AAGCCCA-AGACTCTGTGGCACATTTTT-CTTTCA
1 AAGTCCACA-ACTCTGTGGCACCTTTTTCCTTT-T
* * *
34287 AAGTCCACGACTCTAT-GCACCTTTTT-CTTCCTA
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTT--TT
* *
34320 AAGTCCACGACTCTTTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
** * *
34354 AAGTCCACAACTCCATGACACCCTTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
* * * *
34388 AAGCCCACAACTTTGTGGCACCCTCTTCTCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTC-CTTTT
* * *
34422 AAGCCCATAACT-TCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCT-GTGGCACCTTTTTCCTTTT
* * *
34455 AAG-CCTAAAACTCCGTGGCACC-TTTTCTTTTT
1 AAGTCC-ACAACTCTGTGGCACCTTTTTCCTTTT
** *
34487 AAGTCCATGACTCTGTGACACCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* *
34520 AAGTCCACAACTCCGTGACACTCTTTTTCC-TTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
* *
34553 AAGTCCACAACTCTGTGGTACCTTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTTCCTTTT
* *
34587 AAGTCCACAACTCTGTGGCGCCATTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTTCCTTTT
* * * * *
34621 AA-ACCTACGACTCAGTGGCACCCTCTTCTCTTTT
1 AAGTCC-ACAACTCTGTGGCACCTTTTTC-CTTTT
* * * *
34655 ATGCCCACAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* * *
34688 AAGCCCATAACTCCGTGGCACCTTTTT--TTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* *
34719 CAAAGTCCACGACTCTGTGGCACCTTTTT-CTTTAA
1 --AAGTCCACAACTCTGTGGCACCTTTTTCCTTT-T
* *
34754 AAGTCCACGACACTGTGGCACCTTTTT-CTTTCT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTT-T
* * * * *
34787 AAAGTCCACGACTCTATTGCATTCTTTTTCTTTTT
1 -AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
*
34822 AAGTCCACAACTCCGTGGCACCTTTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTT-CCTTTT
* * *
34856 AAG-CTCACGACTCTATGGCACCATTTTCCCTTTT
1 AAGTC-CACAACTCTGTGGCACC-TTTTTCCTTTT
* * * *
34890 AAG-CCTATACCTCTGTGGCACCCTCTTCCCTTTT
1 AAGTCC-ACAACTCTGTGGCA-CCTTTTTCCTTTT
*
34924 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
*
34958 AAGTCCACAACTCCGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
** *
34992 AAGTCCACAACTCCATGGCACCCTTTTCTCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTC-CTTTT
* * * * *
35026 AAGCCCACGACTCTATGGCACCCTCTTCTCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTC-CTTTT
* * *
35060 AAGCCCACAACTCCGTAGCA-CTTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTT-TTCCTTTT
* * * * *
35093 AAGCCCACAACTCCGTGACA-TTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* *
35125 AAGTCCACAACTCTGTGGCACCTTTCT-CTTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTT-T
* * *
35158 AAGTCCACGACTCTGTGGCACATTTTT--TTCCTA
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTT--TT
* * *
35191 AAGTCCACGACTTTGTGGCACTTTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
* *
35225 AAGTCCACAACT-TCATGGCACTATTTTTCCTTTT
1 AAGTCCACAACTCT-GTGGCAC-CTTTTTCCTTTT
35259 AAGTCCACAACTCTGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
* *
35293 AAGTCTACAACT-TCGTGGCACCCTTTTCCTTTTT
1 AAGTCCACAACTCT-GTGGCACCTTTTTCC-TTTT
* * * *
35327 AAGCCCACGACTCTATGGCACCCTTTTCCTTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCC-TTTT
* * *
35361 AAGCCCACACCTCTGTGGCACCCTCTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
* *
35395 AAGCCCACAACTCCGTGGCACCTTTTT-CTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
**
35427 AAGTCCACAACTCCATGGCACCTTT
1 AAGTCCACAACTCTGTGGCACCTTT
35452 AAATCCAATA
Statistics
Matches: 1266, Mismatches: 174, Indels: 119
0.81 0.11 0.08
Matches are distributed among these distances:
31 4 0.00
32 124 0.10
33 425 0.34
34 663 0.52
35 42 0.03
36 8 0.01
ACGTcount: A:0.19, C:0.32, G:0.12, T:0.37
Consensus pattern (33 bp):
AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
Found at i:35520 original size:49 final size:49
Alignment explanation
Indices: 35448--35544 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 49
35438 TCCATGGCAC
*
35448 CTTTAAATCCAATATCGCTGGCCTTGAATCGGCA-TATTGGCACCTTTAT
1 CTTTAAATCCAATATCGCTGGCCTTGAATCAGCACT-TTGGCACCTTTAT
* *
35497 CTTTAAGA-CCAATGTCGTTGGCCTTGAATCAGCACTTTGGCACCTTTA
1 CTTTAA-ATCCAATATCGCTGGCCTTGAATCAGCACTTTGGCACCTTTA
35545 AGTCGAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 41 0.95
50 2 0.05
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (49 bp):
CTTTAAATCCAATATCGCTGGCCTTGAATCAGCACTTTGGCACCTTTAT
Found at i:35562 original size:43 final size:43
Alignment explanation
Indices: 35442--35569 Score: 132
Period size: 49 Copynumber: 2.8 Consensus size: 43
35432 CACAACTCCA
* *
35442 TGGCACCTTTAAATCCAATATCGCTGGCCTTGAATCGGCATAT
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * *
35485 TGGCACCTTTATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACT-T
1 TGGCA-C-----CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA-TAT
*
35534 TGGCACCTTTAAGTCGAATATCGCTGGCCTTGAATC
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATC
35570 GATACAATGT
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
43 31 0.45
44 1 0.01
48 1 0.01
49 35 0.51
50 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (43 bp):
TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
Found at i:35629 original size:15 final size:16
Alignment explanation
Indices: 35609--35640 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
35599 CAAGGAAATG
35609 TATCGATACATT-ATC
1 TATCGATACATTGATC
35624 TATCGATACATTGATC
1 TATCGATACATTGATC
35640 T
1 T
35641 TTGTATCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (16 bp):
TATCGATACATTGATC
Found at i:36060 original size:19 final size:19
Alignment explanation
Indices: 36036--36111 Score: 152
Period size: 19 Copynumber: 4.0 Consensus size: 19
36026 GTACCCTCAC
36036 TTTGTTGGAAACAAACCAT
1 TTTGTTGGAAACAAACCAT
36055 TTTGTTGGAAACAAACCAT
1 TTTGTTGGAAACAAACCAT
36074 TTTGTTGGAAACAAACCAT
1 TTTGTTGGAAACAAACCAT
36093 TTTGTTGGAAACAAACCAT
1 TTTGTTGGAAACAAACCAT
36112 GATCTTTCTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 57 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
TTTGTTGGAAACAAACCAT
Found at i:36797 original size:15 final size:15
Alignment explanation
Indices: 36777--36810 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36767 CCTAGTTGAA
36777 CAAATCTCAATTCTT
1 CAAATCTCAATTCTT
**
36792 CAAATCTCTTTTCTT
1 CAAATCTCAATTCTT
36807 CAAA
1 CAAA
36811 GTCTACGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.41
Consensus pattern (15 bp):
CAAATCTCAATTCTT
Found at i:36891 original size:31 final size:31
Alignment explanation
Indices: 36798--36962 Score: 122
Period size: 31 Copynumber: 5.3 Consensus size: 31
36788 TCTTCAAATC
36798 TCTTTTCTTCAAAGTCTACGACTTAGTGGCAA
1 TCTTTTCTTCAAAGTCTACGACTTAGTGGC-A
* * * * *
36830 TATCTTC-TCAAAGTCCACGACTCAATGGCA
1 TCTTTTCTTCAAAGTCTACGACTTAGTGGCA
* *
36860 TCTTTTCTTTAAAGTCTATGACTTAGTGGCA
1 TCTTTTCTTCAAAGTCTACGACTTAGTGGCA
** * * *
36891 TCCCTTC-CCAAAATCCACGACTCTA-TGGCA
1 TCTTTTCTTCAAAGTCTACGACT-TAGTGGCA
* * *
36921 CCTTTTTTTCAAAGTCCACGACTCT-GTGGCA
1 TCTTTTCTTCAAAGTCTACGACT-TAGTGGCA
*
36952 CCTTTTTCTTC
1 TC-TTTTCTTC
36963 CTAAAGTTCA
Statistics
Matches: 102, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
30 24 0.24
31 66 0.65
32 12 0.12
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (31 bp):
TCTTTTCTTCAAAGTCTACGACTTAGTGGCA
Found at i:36935 original size:61 final size:62
Alignment explanation
Indices: 36799--36951 Score: 186
Period size: 61 Copynumber: 2.5 Consensus size: 62
36789 CTTCAAATCT
* * * * *
36799 CTTTTCTTCAAAGTCTACGACTTAGTGGCAATATCTTCTCAAAGTCCACGACTCAATGGCAT
1 CTTTTTTTCAAAGTCTACGACTTAGTGGCAATACCTTCCCAAAATCCACGACTCAATGGCAC
* * *
36861 CTTTTCTTT-AAAGTCTATGACTTAGTGGC-ATCCCTTCCCAAAATCCACGACTCTATGGCAC
1 CTTTT-TTTCAAAGTCTACGACTTAGTGGCAATACCTTCCCAAAATCCACGACTCAATGGCAC
*
36922 CTTTTTTTCAAAGTCCACGACTCT-GTGGCA
1 CTTTTTTTCAAAGTCTACGACT-TAGTGGCA
36952 CCTTTTTCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
60 3 0.04
61 47 0.61
62 25 0.32
63 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.33
Consensus pattern (62 bp):
CTTTTTTTCAAAGTCTACGACTTAGTGGCAATACCTTCCCAAAATCCACGACTCAATGGCAC
Found at i:36978 original size:34 final size:32
Alignment explanation
Indices: 36800--37793 Score: 314
Period size: 34 Copynumber: 30.1 Consensus size: 32
36790 TTCAAATCTC
* *
36800 TTTTCTTCAAAGTCTACGACT-TAGTGGCA-AT
1 TTTTCTTCAAAGTCCACGACTCT-GTGGCACCT
* ** *
36831 ATCTTC-TCAAAGTCCACGACTCAATGGCATC-
1 -TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
* * *
36862 TTTTCTTTAAAGTCTATGACT-TAGTGGCATCC-
1 TTTTCTTCAAAGTCCACGACTCT-GTGGCA-CCT
* * * *
36894 -CTTC-CCAAAATCCACGACTCTATGGCACCT
1 TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
36924 TTTT-TTCAAAGTCCACGACTCTGTGGCACCT
1 TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
* * *
36955 TTTTCTTCCTAAAGTTCATGACTCCGTGGCACTCT
1 TTTTCTT-C-AAAGTCCACGACTCTGTGGCAC-CT
** * * *
36990 TTTTCCTTTTAAGTCCACAACTCCGTAGCACCCT
1 TTTT-CTTCAAAGTCCACGACTCTGTGGCA-CCT
* * * *
37024 TTTTCCGTT-TAAGTCCGCAACTCCGTGGCACCCT
1 TTTT-C-TTCAAAGTCCACGACTCTGTGGCA-CCT
* ** * *
37058 TTTCCCTTTTAAGCCCACAACTCTGTGGCACCCT
1 TTT-TCTTCAAAGTCCACGACTCTGTGGCA-CCT
* ** * *
37092 CTTCTCTTTTAAG-CTCACAACTCCGTGGCACCT
1 -TTTTCTTCAAAGTC-CACGACTCTGTGGCACCT
* ** * * **
37125 TATTCTTTTTAAGCCCACAACTCCATGGCACCGT
1 TTTTC-TTCAAAGTCCACGACTCTGTGGCACC-T
* * *
37159 TTCTT-TT-TAAGTCCACGACTCTATGGCACAT
1 TT-TTCTTCAAAGTCCACGACTCTGTGGCACCT
** **
37190 TTTTCTTTTTAAGTTTACGACTCTGTGGCACCT
1 TTTTC-TTCAAAGTCCACGACTCTGTGGCACCT
* *
37223 TTTTCTTTCAAAGTCCACGACTCTGTAGCACAT
1 TTTTC-TTCAAAGTCCACGACTCTGTGGCACCT
*
37256 TTTTCTTCCTAAAGTCCACGACTCTGTGGCACTAT
1 TTTTCTT-C-AAAGTCCACGACTCTGTGGCAC-CT
** * **
37291 TTTTCCTTTTAAGTCCACAACTCTGTGGCAGTTT
1 TTTT-CTTCAAAGTCCACGACTCTGTGGCA-CCT
** * * *
37325 TTTTCCTTTTAAGTCCACAAGTTTGTGGCACTCT
1 TTTT-CTTCAAAGTCCACGACTCTGTGGCAC-CT
* ** * * **
37359 TTTCCTTTTAAGTCCACAACTCCGTAACA-CT
1 TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
** * *
37390 ATTTTCCTTTTAAGCCCACAACTCTGTGGCACCCT
1 -TTTT-CTTCAAAGTCCACGACTCTGTGGCA-CCT
* ** * * *
37425 CTTCTCTTTTAAGCCCACAACTCCGTGGCACCT
1 -TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
* ** * * *
37458 TGTTCCTTTTAAGCCCAC-ATCTCCGTGACACC-
1 T-TTTCTTCAAAGTCCACGA-CTCTGTGGCACCT
** * *
37490 TTTTCTTTTTAAGTCCACGACTCCGTGGCACAT
1 TTTTC-TTCAAAGTCCACGACTCTGTGGCACCT
37523 TTTTCTTTCAAAGTCCACGACTCTGTGGCACCT
1 TTTTC-TTCAAAGTCCACGACTCTGTGGCACCT
* *
37556 TTTTCTTCCTAAAGTCCATGACTCTATGGCACTCT
1 TTTTCTT-C-AAAGTCCACGACTCTGTGGCAC-CT
** * * * *
37591 TTTTCCTTTTAAGTCCACAACTCCGTGACACTAT
1 TTTT-CTTCAAAGTCCACGACTCTGTGGCAC-CT
** * * *
37625 TTTTCCTTTTAAGTCCACAACTCTATGGCATCAT
1 TTTT-CTTCAAAGTCCACGACTCTGTGGCA-CCT
* ** * * *
37659 TTTCCCTTTTAAGCCCACGACTCCGTGGCGCACT
1 TTT-TCTTCAAAGTCCACGACTCTGTGGCAC-CT
**
37693 TTTCTCTTTTAAG-CACAC-ACCTCTGTGGCACCCT
1 TTT-TCTTCAAAGTC-CACGA-CTCTGTGGCA-CCT
** ** * * *
37727 CTTCCCTTTTAAGCCCACAACTCCGTGGCACCT
1 -TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
* ** * *
37760 TTTCCTTTTAAGTCCACAACTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
37792 TT
1 TT
37794 ACGTCTAGTA
Statistics
Matches: 785, Mismatches: 122, Indels: 110
0.77 0.12 0.11
Matches are distributed among these distances:
29 2 0.00
30 21 0.03
31 77 0.10
32 94 0.12
33 196 0.25
34 350 0.45
35 36 0.05
36 9 0.01
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (32 bp):
TTTTCTTCAAAGTCCACGACTCTGTGGCACCT
Found at i:37144 original size:33 final size:33
Alignment explanation
Indices: 36916--37793 Score: 688
Period size: 34 Copynumber: 26.3 Consensus size: 33
36906 CACGACTCTA
** * *
36916 TGGCACCTTTTT--TTCAAAGTCCACGACTCTG
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
* * **
36947 TGGCACCTTTTT-CTTCCTAAAGTTCATGACTCCG
1 TGGCACCTTTTTCCTT--TTAAGTCCACAACTCCG
36981 TGGCACTCTTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCG
* * *
37015 TAGCACCCTTTTTCCGTTTAAGTCCGCAACTCCG
1 TGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCG
* * *
37049 TGGCACCCTTTTCCCTTTTAAGCCCACAACTCTG
1 TGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCG
* *
37083 TGGCACCCTCTTCTCTTTTAAG-CTCACAACTCCG
1 TGGCACCTTTTTC-CTTTTAAGTC-CACAACTCCG
* * * *
37117 TGGCACCTTATTCTTTTTAAGCCCACAACTCCA
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
* * * **
37150 TGGCACC-GTTTCTTTTTAAGTCCACGACTCTA
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
* * ** * *
37182 TGGCACATTTTTCTTTTTAAGTTTACGACTCTG
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
* * *
37215 TGGCACCTTTTT-CTTTCAAAGTCCACGACTCTG
1 TGGCACCTTTTTCCTTT-TAAGTCCACAACTCCG
* * * * *
37248 TAGCACATTTTT-CTTCCTAAAGTCCACGACTCTG
1 TGGCACCTTTTTCCTT--TTAAGTCCACAACTCCG
* *
37282 TGGCACTATTTTTCCTTTTAAGTCCACAACTCTG
1 TGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCG
** * **
37316 TGGCAGTTTTTTTCCTTTTAAGTCCACAAGTTTG
1 TGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCG
37350 TGGCA-CTCTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCACCT-TTTTCCTTTTAAGTCCACAACTCCG
** * *
37383 TAACA-CTATTTTCCTTTTAAGCCCACAACTCTG
1 TGGCACCT-TTTTCCTTTTAAGTCCACAACTCCG
* * *
37416 TGGCACCCTCTTCTCTTTTAAGCCCACAACTCCG
1 TGGCACCTTTTTC-CTTTTAAGTCCACAACTCCG
* * *
37450 TGGCACCTTGTTCCTTTTAAGCCCACATCTCCG
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
* * *
37483 TGACACC-TTTTCTTTTTAAGTCCACGACTCCG
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
* * * *
37515 TGGCACATTTTT-CTTTCAAAGTCCACGACTCTG
1 TGGCACCTTTTTCCTTT-TAAGTCCACAACTCCG
* ** **
37548 TGGCACCTTTTT-CTTCCTAAAGTCCATGACTCTA
1 TGGCACCTTTTTCCTT--TTAAGTCCACAACTCCG
37582 TGGCACTCTTTTTCCTTTTAAGTCCACAACTCCG
1 TGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCG
* * **
37616 TGACACTATTTTTCCTTTTAAGTCCACAACTCTA
1 TGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCG
* * * *
37650 TGGCATCATTTTCCCTTTTAAGCCCACGACTCCG
1 TGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCG
* * *
37684 TGGCGCAC-TTTTCTCTTTTAAG-CACACACCTCTG
1 TGGCAC-CTTTTTC-CTTTTAAGTC-CACAACTCCG
* * *
37718 TGGCACCCTCTTCCCTTTTAAGCCCACAACTCCG
1 TGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCG
37752 TGGCACC-TTTTCCTTTTAAGTCCACAACTCCG
1 TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
37784 TGGCACCTTT
1 TGGCACCTTT
37794 ACGTCTAGTA
Statistics
Matches: 705, Mismatches: 109, Indels: 64
0.80 0.12 0.07
Matches are distributed among these distances:
31 12 0.02
32 89 0.13
33 211 0.30
34 357 0.51
35 27 0.04
36 9 0.01
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.36
Consensus pattern (33 bp):
TGGCACCTTTTTCCTTTTAAGTCCACAACTCCG
Found at i:38042 original size:39 final size:39
Alignment explanation
Indices: 37983--38061 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
37973 CACTTTGTCT
* *
37983 CAAGACCAATGTCTCTGGCCTTGAATCAGCACAATGGCA
1 CAAGACCAATATCGCTGGCCTTGAATCAGCACAATGGCA
* * *
38022 CAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CAAGACCAATATCGCTGGCCTTGAATCAGCACAATGGCA
38061 C
1 C
38062 CTTGTCTCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
CAAGACCAATATCGCTGGCCTTGAATCAGCACAATGGCA
Found at i:38063 original size:137 final size:141
Alignment explanation
Indices: 37807--38064 Score: 353
Period size: 137 Copynumber: 1.8 Consensus size: 141
37797 TCTAGTACTG
*
37807 CTGGCCTTGAATCAGCATATTGGCACCATTATCTTTAAGACCAATGTCGCTAGCCCTGAATCAGC
1 CTGGCCTTGAATCAGCATATTGGCACCATTATCTTCAAGACCAATGTCGCTAGCCCTGAATCAGC
** * * *
37872 ACTTTGGCACCTTTAAGTCGAATATTGCTGGCCTTGAATCAGCATATTGACACCTTTACCATTTT
66 ACAATGGCACC--TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTACCATTTT
37937 GAGTCCAATATCA
129 GAGTCCAATATCA
* * * * * *
37950 CTGGCCTTGAATCGGCATATTGGCA-CTTTGTC-TCAAGACCAATGTCTCTGGCCTTGAATCAGC
1 CTGGCCTTGAATCAGCATATTGGCACCATTATCTTCAAGACCAATGTCGCTAGCCCTGAATCAGC
*
38013 ACAATGGCA-C-AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
66 ACAATGGCACCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTT
38065 GTCTCTAAGA
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
137 38 0.37
140 1 0.01
141 34 0.33
142 5 0.05
143 24 0.24
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (141 bp):
CTGGCCTTGAATCAGCATATTGGCACCATTATCTTCAAGACCAATGTCGCTAGCCCTGAATCAGC
ACAATGGCACCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTACCATTTTGA
GTCCAATATCA
Found at i:44805 original size:18 final size:19
Alignment explanation
Indices: 44770--44824 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 19
44760 AGTAATAATC
*
44770 AAAA-TATTTTAATATTAA
1 AAAATTATTTAAATATTAA
*
44788 ATAATTATTTAAAT-TTAA
1 AAAATTATTTAAATATTAA
* *
44806 AAAATTAATAAAATATTAA
1 AAAATTATTTAAATATTAA
44825 TATATAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 18 0.60
19 12 0.40
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTATTTAAATATTAA
Found at i:45133 original size:44 final size:44
Alignment explanation
Indices: 45085--45185 Score: 152
Period size: 43 Copynumber: 2.3 Consensus size: 44
45075 CAAATTATGG
* *
45085 ACTAATTTTTTTCTTACCAAAGTTGCAATTTATTCAAGTGTGTA
1 ACTAATTTTTTTCTCACCAAAGTTGCAATATATTCAAGTGTGTA
* *
45129 ACTAA-TTTTTTCTCACCAAAGTTTCAATATATTCAAGTTTGTA
1 ACTAATTTTTTTCTCACCAAAGTTGCAATATATTCAAGTGTGTA
45172 ACT-ATTTTTTTCTC
1 ACTAATTTTTTTCTC
45186 CTATTTTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.02
43 46 0.88
44 5 0.10
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.48
Consensus pattern (44 bp):
ACTAATTTTTTTCTCACCAAAGTTGCAATATATTCAAGTGTGTA
Found at i:47132 original size:2 final size:2
Alignment explanation
Indices: 47125--47168 Score: 72
Period size: 2 Copynumber: 22.0 Consensus size: 2
47115 AGGAAAACGA
47125 AT AT AT AT GA- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47167 AT
1 AT
47169 TCTTATATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.03
2 38 0.95
3 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47664 original size:39 final size:39
Alignment explanation
Indices: 47610--47687 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
47600 GAAAGAATAA
**
47610 TTAATTCGCAGCATGGTATAGAACCTTTGTTTTCATTAT
1 TTAATTCGCAGCATGGTATAGAACCTTCATTTTCATTAT
47649 TTAATTCGCAGCATGGTATAGAACCTTCATTTTCATTAT
1 TTAATTCGCAGCATGGTATAGAACCTTCATTTTCATTAT
47688 CTGTTTTGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (39 bp):
TTAATTCGCAGCATGGTATAGAACCTTCATTTTCATTAT
Found at i:52626 original size:15 final size:16
Alignment explanation
Indices: 52606--52641 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
52596 AGGGCTCGAA
52606 TATTTTG-ATTTGAAT
1 TATTTTGAATTTGAAT
52621 TATTTTGAATTTGAAT
1 TATTTTGAATTTGAAT
*
52637 CATTT
1 TATTT
52642 CGAGTGTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (16 bp):
TATTTTGAATTTGAAT
Found at i:52933 original size:6 final size:6
Alignment explanation
Indices: 52922--52946 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
52912 TTTGATATAT
52922 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
52947 CTTTTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:53577 original size:22 final size:23
Alignment explanation
Indices: 53544--53587 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
53534 TTTGTTAAAT
*
53544 TTTATTTTATTAGATTTTTTTAG
1 TTTATTTTATTAGAATTTTTTAG
*
53567 TTTA-TTTATTATAATTTTTTA
1 TTTATTTTATTAGAATTTTTTA
53588 AGGTTGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (23 bp):
TTTATTTTATTAGAATTTTTTAG
Found at i:53597 original size:25 final size:22
Alignment explanation
Indices: 53544--53599 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
53534 TTTGTTAAAT
* *
53544 TTTATTTTATTAGATTTTTTTAG
1 TTTA-TTTATTAAATTTTTTAAG
53567 TTTATTTATTATAATTTTTTAAGG
1 TTTATTTATTA-AATTTTTTAA-G
53591 TTGTATTTA
1 TT-TATTTA
53600 GAAATTTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 7 0.25
23 12 0.43
24 3 0.11
25 6 0.21
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (22 bp):
TTTATTTATTAAATTTTTTAAG
Found at i:54411 original size:24 final size:24
Alignment explanation
Indices: 54374--54444 Score: 61
Period size: 24 Copynumber: 3.0 Consensus size: 24
54364 AAAGAAGGAT
* *
54374 AAAATATAACTAAAAATAACAATA
1 AAAATAAAAATAAAAATAACAATA
** * *
54398 AAAATAAAAATAAATCTTATAATA
1 AAAATAAAAATAAAAATAACAATA
* * *
54422 AAATTAAAAAAAAAAAAAACAAT
1 AAAATAAAAATAAAAATAACAAT
54445 GCGCCTAATG
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (24 bp):
AAAATAAAAATAAAAATAACAATA
Found at i:55819 original size:30 final size:30
Alignment explanation
Indices: 55785--55844 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
55775 TACTTTTAAT
55785 ATATATTAAAAATATTTTAATAAATCATAC
1 ATATATTAAAAATATTTTAATAAATCATAC
55815 ATATATTAAAAATATTTTAATAAATCATAC
1 ATATATTAAAAATATTTTAATAAATCATAC
55845 TTAATAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (30 bp):
ATATATTAAAAATATTTTAATAAATCATAC
Found at i:55861 original size:30 final size:30
Alignment explanation
Indices: 55785--55864 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
55775 TACTTTTAAT
*
55785 ATATATTAAAAATATTTTAATAAATCATAC
1 ATATAATAAAAATATTTTAATAAATCATAC
*
55815 ATATATTAAAAATATTTTAATAAATCATAC
1 ATATAATAAAAATATTTTAATAAATCATAC
55845 -T-TAATAATAAATTATTTTAA
1 ATATAATAA-AAA-TATTTTAA
55865 GAGAATATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
28 5 0.11
29 4 0.09
30 38 0.81
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (30 bp):
ATATAATAAAAATATTTTAATAAATCATAC
Found at i:57873 original size:17 final size:17
Alignment explanation
Indices: 57851--57899 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
57841 ACTACCAAAA
57851 AAAAAAAAAAGAGAAAG
1 AAAAAAAAAAGAGAAAG
* *
57868 AAAAAAAAGAGAAAAAG
1 AAAAAAAAAAGAGAAAG
*
57885 -AAAGAAAAAGAGAAA
1 AAAAAAAAAAGAGAAA
57900 AAATAAGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAGAGAAAG
Found at i:57883 original size:12 final size:12
Alignment explanation
Indices: 57852--57919 Score: 54
Period size: 12 Copynumber: 6.0 Consensus size: 12
57842 CTACCAAAAA
57852 AAAAAAAAAGAG
1 AAAAAAAAAGAG
*
57864 AAAGAAAAA-A-
1 AAAAAAAAAGAG
* *
57874 AAGAGAAAA-AG
1 AAAAAAAAAGAG
*
57885 AAAGAAAAAGAG
1 AAAAAAAAAGAG
*
57897 AAAAAATAAG-G
1 AAAAAAAAAGAG
*
57908 AAAAAAATAGAG
1 AAAAAAAAAGAG
57920 TTTCTTCAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
10 7 0.17
11 16 0.38
12 19 0.45
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAGAG
Found at i:57894 original size:18 final size:17
Alignment explanation
Indices: 57847--57901 Score: 78
Period size: 18 Copynumber: 3.3 Consensus size: 17
57837 TTTCACTACC
57847 AAAAA-AAAAAAAA-AG
1 AAAAAGAAAAAAAAGAG
*
57862 AGAAAGAAAAAAAAGAG
1 AAAAAGAAAAAAAAGAG
57879 AAAAAGAAAGAAAAAGAG
1 AAAAAGAAA-AAAAAGAG
57897 AAAAA
1 AAAAA
57902 ATAAGGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
15 4 0.11
16 8 0.23
17 10 0.29
18 13 0.37
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAGAG
Found at i:57900 original size:17 final size:16
Alignment explanation
Indices: 57848--57900 Score: 72
Period size: 15 Copynumber: 3.2 Consensus size: 16
57838 TTCACTACCA
*
57848 AAAAAAAAAAAAAGAG
1 AAAAGAAAAAAAAGAG
57864 -AAAGAAAAAAAAGAG
1 AAAAGAAAAAAAAGAG
57879 AAAAAGAAAGAAAAAGAG
1 -AAAAGAAA-AAAAAGAG
57897 AAAA
1 AAAA
57901 AATAAGGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
15 14 0.42
17 11 0.33
18 8 0.24
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAGAG
Found at i:63740 original size:31 final size:32
Alignment explanation
Indices: 63674--63778 Score: 142
Period size: 31 Copynumber: 3.3 Consensus size: 32
63664 GATCAAATAT
63674 ACACAAGTCGGTGGCAACTCTTCTCTAAAGCCC
1 ACACAAGTCGGTGGCAACTCTT-TCTAAAGCCC
* * *
63707 ACACAAGTTGGTGGCAACT-TTTTTAAAGACC
1 ACACAAGTCGGTGGCAACTCTTTCTAAAGCCC
**
63738 ACACAAGTCAATGGCAA-TCTTTCTAAAGCCC
1 ACACAAGTCGGTGGCAACTCTTTCTAAAGCCC
63769 ACACAAGTCG
1 ACACAAGTCG
63779 AGCACGCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.02
31 41 0.66
32 2 0.03
33 18 0.29
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (32 bp):
ACACAAGTCGGTGGCAACTCTTTCTAAAGCCC
Found at i:69292 original size:30 final size:31
Alignment explanation
Indices: 69253--69332 Score: 81
Period size: 34 Copynumber: 2.5 Consensus size: 31
69243 CAAAGTCTAT
*
69253 GACTTAGTGGCATCTCTTC-TCCAAGTCCAC
1 GACTCAGTGGCATCTCTTCTTCCAAGTCCAC
* * *
69283 GACTCAGTGGCATCCTTTTTTCTTCCAAGTTCAT
1 GACTCAGTGGCAT-C--TCTTCTTCCAAGTCCAC
*
69317 GACTCCGTGGCATCTC
1 GACTCAGTGGCATCTC
69333 ATTTAAAGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
30 12 0.30
31 2 0.05
33 5 0.12
34 21 0.52
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.34
Consensus pattern (31 bp):
GACTCAGTGGCATCTCTTCTTCCAAGTCCAC
Found at i:69351 original size:29 final size:30
Alignment explanation
Indices: 69259--69714 Score: 270
Period size: 29 Copynumber: 15.2 Consensus size: 30
69249 CTATGACTTA
* * * *
69259 GTGGCATCTCTTCTCCAAGTCCACGACTCA
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * * **
69289 GTGGCATCCTTTTTTCTTCCAAGTTCATGACTCC
1 GTGGCAT-C--TCTT-TTCAAAGTCCACAACTCC
* *
69323 GTGGCATCTCATTT-AAAGTCCATAACTCC
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* **
69352 GTGGCATCCCTTTTCAAAGTTTACAACTCC
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * *
69382 ATGGCAT-T-TTTGTTATAGTCCACAACTCC
1 GTGGCATCTCTTT-TCAAAGTCCACAACTCC
* * * **
69411 GTGGCACCTTTTTCTTCCAAGTCCACAACTTT
1 GTGGCATC-TCTT-TTCAAAGTCCACAACTCC
* *
69443 GTGGCATCTC-TTTCAAAGTCTACAACTCT
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* *
69472 ATGGCATCTCTTTT-AAAGTCCACAACTCT
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * *
69501 GTGACATCCCTTGTCAAAGTCCACAACTCC
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * *
69531 GTCGTATCCCTTTTCAAAGTCCACAACTCC
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * * * * *
69561 TTGACACCTTTTTTTAAAGTCCACAACTCT
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * ** *
69591 ATGGTA-C-CTTTTTTAAGTCCACAACTCT
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
* * ** *
69619 ATGGCACCT-TTTTTGAAGTTCACAACTCC
1 GTGGCATCTCTTTTCAAAGTCCACAACTCC
*
69648 GTGGCATCAT-TTTT-AAAGTCCACAACTCT
1 GTGGCATC-TCTTTTCAAAGTCCACAACTCC
*
69677 GTGACA-CAT-TTTTCTTGAAAGTCCACAACTCC
1 GTGGCATC-TCTTTTC---AAAGTCCACAACTCC
69709 GTGGCA
1 GTGGCA
69715 CCCTTTCGAA
Statistics
Matches: 337, Mismatches: 70, Indels: 36
0.76 0.16 0.08
Matches are distributed among these distances:
28 34 0.10
29 132 0.39
30 100 0.30
31 5 0.01
32 40 0.12
33 5 0.01
34 21 0.06
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (30 bp):
GTGGCATCTCTTTTCAAAGTCCACAACTCC
Found at i:69450 original size:120 final size:121
Alignment explanation
Indices: 69276--69661 Score: 288
Period size: 120 Copynumber: 3.2 Consensus size: 121
69266 CTCTTCTCCA
* * **
69276 AGTCCACGACTCAGTGGCATCCTTTTTTCTTCCAAGTTCATGACTCCGTGGCATCTCATTT-AAA
1 AGTCCACAACTCAGTGGCATCCTTTTTTCTTCCAAGTCCACAACTCCGTGGCATCTC-TTTCAAA
* * **
69340 GTCCATAACTCCGTGGCATCCCTTTTCAAAGTTTACAACTCCATGGCATTTTTGTTAT
65 GTCCACAACTCCATGGCATCCCTTTT-AAAGTCCACAACTCCATGGCATTTTTGTTAT
* **
69398 AGTCCACAACTCCGTGGCA-CC-TTTTTCTTCCAAGTCCACAACTTTGTGGCATCTCTTTCAAAG
1 AGTCCACAACTCAGTGGCATCCTTTTTTCTTCCAAGTCCACAACTCCGTGGCATCTCTTTCAAAG
* * * ** * ** * *
69461 TCTACAACTCTATGGCATCTCTTTTAAAGTCCACAACTCTGTGACATCCCTTGTCAA
66 TCCACAACTCCATGGCATCCCTTTTAAAGTCCACAACTCCATGGCAT-TTTTGTTAT
* * * * * * * * * *
69518 AGTCCACAACTCCGTCGTATCC---CTT-TTCAAAGTCCACAACTCCTTGACACCTTTTTTTAAA
1 AGTCCACAACTCAGTGGCATCCTTTTTTCTTCCAAGTCCACAACTCCGTGGCATC-TCTTTCAAA
* * * * * *
69579 GTCCACAACTCTATGGTA-CCTTTTTTAAGTCCACAACTCTATGGCACCTTTTT-TGA-
65 GTCCACAACTCCATGGCATCCCTTTTAAAGTCCACAACTCCATGGCA--TTTTTGTTAT
* * *
69635 AGTTCACAACTCCGTGGCATCATTTTT
1 AGTCCACAACTCAGTGGCATCCTTTTT
69662 AAAGTCCACA
Statistics
Matches: 208, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
117 18 0.09
118 45 0.22
119 47 0.23
120 77 0.37
121 4 0.02
122 17 0.08
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.35
Consensus pattern (121 bp):
AGTCCACAACTCAGTGGCATCCTTTTTTCTTCCAAGTCCACAACTCCGTGGCATCTCTTTCAAAG
TCCACAACTCCATGGCATCCCTTTTAAAGTCCACAACTCCATGGCATTTTTGTTAT
Found at i:69467 original size:90 final size:88
Alignment explanation
Indices: 69337--69732 Score: 347
Period size: 90 Copynumber: 4.4 Consensus size: 88
69327 CATCTCATTT
* * *
69337 AAAGTCCATAACTCCGTGGCATCCCTTTTCAAAGTTTACAACTCCATGGCAT-TTTTGTTATAGT
1 AAAGTCCACAACTCCGTGGCATCCC-TTTCAAAGTCTACAACTCCATGGCATCTTTT-TTAAAGT
* *
69401 CCACAACTCCGTGGCACCTTTTTCTTC
64 CCACAACTCTGTGACACC-TTTT-TTC
* ** * * *
69428 CAAGTCCACAACTTTGTGGCATCTCTTTCAAAGTCTACAACTCTATGGCATCTCTTTTAAAGTCC
1 AAAGTCCACAACTCCGTGGCATCCCTTTCAAAGTCTACAACTCCATGGCATCTTTTTTAAAGTCC
* *
69493 ACAACTCTGTGACATCC-CTTGTC
66 ACAACTCTGTGACA-CCTTTTTTC
* * * * * *
69516 AAAGTCCACAACTCCGTCGTATCCCTTTTCAAAGTCCACAACTCCTTGACACCTTTTTTTAAAGT
1 AAAGTCCACAACTCCGTGGCATCCC-TTTCAAAGTCTACAACTCCATGGCATC-TTTTTTAAAGT
* **
69581 CCACAACTCTATGGTACCTTTTTT-
64 CCACAACTCTGTGACACCTTTTTTC
** * ** * *
69605 -AAGTCCACAACTCTATGGCA-CCTTTTTTGAAGT-TCACAACTCCGTGGCATCATTTTTAAAGT
1 AAAGTCCACAACTCCGTGGCATCC-CTTTCAAAGTCT-ACAACTCCATGGCATCTTTTTTAAAGT
* *
69667 CCACAACTCTGTGACACATTTTTCTTG
64 CCACAACTCTGTGACAC-CTTTT-TTC
*
69694 AAAGTCCACAACTCCGTGGCA-CCCTTTCGAAAGCCTACA
1 AAAGTCCACAACTCCGTGGCATCCCTTTC-AAAGTCTACA
69733 CAAGTCGGTG
Statistics
Matches: 240, Mismatches: 52, Indels: 27
0.75 0.16 0.08
Matches are distributed among these distances:
86 24 0.10
87 26 0.11
88 39 0.16
89 29 0.12
90 96 0.40
91 26 0.11
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (88 bp):
AAAGTCCACAACTCCGTGGCATCCCTTTCAAAGTCTACAACTCCATGGCATCTTTTTTAAAGTCC
ACAACTCTGTGACACCTTTTTTC
Found at i:69766 original size:31 final size:32
Alignment explanation
Indices: 69700--70059 Score: 214
Period size: 31 Copynumber: 11.5 Consensus size: 32
69690 CTTGAAAGTC
* * *
69700 CACAACTCCGTGGC-ACCCTT-TCGAAAGCCTA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCC-A
*
69731 CACAAGTCGGTGGCAACCCTTCCCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
* ** * *
69764 CAAAAGTTAGTGGCAACCC-T-TCGAAAACC-
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCA
** *
69793 CAC-A-TAAGTGGCAACCCTTCTTTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
* * *
69824 CACAAGTCAGCGGCAACCC--CTCTAAAACCCA
1 CACAAGTCGGTGGCAACCCTTCTCT-AAAGCCA
* *
69855 CACAAGTCGGTGGCAACCC-T-TCGAAAGCTTA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGC-CA
* * *
69886 CACAAGTCGATGGCAACCTTTCTTTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
* * *
69919 CATAAGTTGGTGACAACCC-T-TCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
* * * *
69950 CATAAGTCAGTGGCAA-CATTTTC-AAAGTCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
* *
69981 CACATGTCAGTGGCAACCCTT-TCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
* * * *
70013 CACAAGTTGGTAGTAACCC-TCTCAAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAG-CCA
70045 CACAAGTCGGTGGCA
1 CACAAGTCGGTGGCA
70060 TCTTCTTCTA
Statistics
Matches: 256, Mismatches: 53, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
27 12 0.05
28 2 0.01
29 6 0.02
30 9 0.04
31 110 0.43
32 61 0.24
33 53 0.21
34 3 0.01
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.19
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCTTCTCTAAAGCCA
Found at i:69787 original size:64 final size:62
Alignment explanation
Indices: 69709--70059 Score: 293
Period size: 64 Copynumber: 5.6 Consensus size: 62
69699 CCACAACTCC
* *
69709 GTGGC-ACCCTTTCGAAAGCCTACACAAGTCGGTGGCAACCCTTCCCTAAAGCCCACAAAAGTTA
1 GTGGCAACCC-TTCGAAAGCCCACACAAGTCGGTGGCAACCCTT--CTAAAGCCCACACAAGTTA
* * *
69773 GTGGCAACCCTTCGAAAACCCACATAA----GTGGCAACCCTTCTTTAAAGCCCACACAAGTCA
1 GTGGCAACCCTTCGAAAGCCCACACAAGTCGGTGGCAACCCTTC--TAAAGCCCACACAAGTTA
* * * * * ** *
69833 GCGGCAACCCCTCTAAAACCCACACAAGTCGGTGGCAACCCTTCGAAAGCTTACACAAG-TC
1 GTGGCAACCCTTCGAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTTA
* * * * * * *
69894 GATGGCAACCTTTCTTTAAAGCCCACATAAGTTGGTGACAACCCTTCTAAAGCCCACATAAGTCA
1 G-TGGCAACCCTTC--GAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTTA
** * * * *
69959 GTGGCAACATTTTC-AAAGTCCACACATGTCAGTGGCAACCCTTTCTAAAGCCCACACAAGTTG
1 GTGGCAAC-CCTTCGAAAGCCCACACAAGTCGGTGGCAACCC-TTCTAAAGCCCACACAAGTTA
* * *
70022 GTAGTAACCCTCTCAAAAGCCCACACAAGTCGGTGGCA
1 GTGGCAACCCT-TCGAAAGCCCACACAAGTCGGTGGCA
70060 TCTTCTTCTA
Statistics
Matches: 228, Mismatches: 44, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
58 1 0.00
60 51 0.22
61 1 0.00
62 43 0.19
63 26 0.11
64 97 0.43
65 9 0.04
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.20
Consensus pattern (62 bp):
GTGGCAACCCTTCGAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTTA
Found at i:69805 original size:91 final size:91
Alignment explanation
Indices: 69709--69880 Score: 222
Period size: 91 Copynumber: 1.9 Consensus size: 91
69699 CCACAACTCC
* * * * *
69709 GTGGC-ACCCTT-TCGAAAGCCTACACAAGTCGGTGGCAACCCTTCCCTAAAGCCCACAAAAGTT
1 GTGGCAACCCTTCTCGAAAGCCCACACAAGTCAGCGGCAACCC--CCCTAAAACCCACAAAAGTC
69772 AGTGGCAACCCTTCGAAAACCCACATAA
64 AGTGGCAACCCTTCGAAAACCCACATAA
** * * *
69800 GTGGCAACCCTTCTTTAAAGCCCACACAAGTCAGCGGCAACCCCTCTAAAACCCACACAAGTCGG
1 GTGGCAACCCTTCTCGAAAGCCCACACAAGTCAGCGGCAACCCCCCTAAAACCCACAAAAGTCAG
69865 TGGCAACCCTTCGAAA
66 TGGCAACCCTTCGAAA
69881 GCTTACACAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
91 38 0.55
92 6 0.09
93 25 0.36
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.17
Consensus pattern (91 bp):
GTGGCAACCCTTCTCGAAAGCCCACACAAGTCAGCGGCAACCCCCCTAAAACCCACAAAAGTCAG
TGGCAACCCTTCGAAAACCCACATAA
Found at i:69812 original size:60 final size:60
Alignment explanation
Indices: 69740--69861 Score: 172
Period size: 60 Copynumber: 2.0 Consensus size: 60
69730 ACACAAGTCG
* * * *
69740 GTGGCAACCCTTCCCTAAAGCCCACAAAAGTTAGTGGCAACCCTTCGAAAACCCACATAA
1 GTGGCAACCCTTCCCTAAAGCCCACAAAAGTCAGCGGCAACCCCTCGAAAACCCACACAA
** * *
69800 GTGGCAACCCTTCTTTAAAGCCCACACAAGTCAGCGGCAACCCCTCTAAAACCCACACAA
1 GTGGCAACCCTTCCCTAAAGCCCACAAAAGTCAGCGGCAACCCCTCGAAAACCCACACAA
69860 GT
1 GT
69862 CGGTGGCAAC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.34, C:0.35, G:0.15, T:0.16
Consensus pattern (60 bp):
GTGGCAACCCTTCCCTAAAGCCCACAAAAGTCAGCGGCAACCCCTCGAAAACCCACACAA
Found at i:69936 original size:95 final size:95
Alignment explanation
Indices: 69723--70059 Score: 275
Period size: 95 Copynumber: 3.6 Consensus size: 95
69713 CACCCTTTCG
* * * * * * **
69723 AAAGCCTACACAAGTCGGTGGCAACCCTTCCCTAAAGCCCACAAAAGTTAGTGGCAAC-CCTTCG
1 AAAGCCCACACAAGTTGGTGACAACCC--CTCTAAAACCCACACAAGTCGGTGGCAACACCTTC-
* * *
69787 AAA-ACC-CAC-A-TAAGTGGCAACCCTTCTTT
63 AAAGTCCACACAAGTCAGTGGCAACCTTTCTTT
** * *
69816 AAAGCCCACACAAGTCAGCGGCAACCCCTCTAAAACCCACACAAGTCGGTGGCAAC-CCTTCGAA
1 AAAGCCCACACAAGTTGGTGACAACCCCTCTAAAACCCACACAAGTCGGTGGCAACACCTTC-AA
*
69880 AG-CTTACACAAGTC-GATGGCAACCTTTCTTT
65 AGTC-CACACAAGTCAG-TGGCAACCTTTCTTT
* * * * * **
69911 AAAGCCCACATAAGTTGGTGACAACCCTTCTAAAGCCCACATAAGTCAGTGGCAACATTTTCAAA
1 AAAGCCCACACAAGTTGGTGACAACCCCTCTAAAACCCACACAAGTCGGTGGCAACACCTTCAAA
*
69976 GTCCACACATGTCAGTGGCAACCCTTTC--T
66 GTCCACACAAGTCAGTGGCAA-CCTTTCTTT
*
70005 AAAGCCCACACAAGTTGGT-AGTAA-CCCTCTCAAAAGCCCACACAAGTCGGTGGCA
1 AAAGCCCACACAAGTTGGTGA-CAACCCCTCT-AAAA-CCCACACAAGTCGGTGGCA
70060 TCTTCTTCTA
Statistics
Matches: 201, Mismatches: 30, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
91 34 0.17
93 33 0.16
94 26 0.13
95 97 0.48
96 11 0.05
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.19
Consensus pattern (95 bp):
AAAGCCCACACAAGTTGGTGACAACCCCTCTAAAACCCACACAAGTCGGTGGCAACACCTTCAAA
GTCCACACAAGTCAGTGGCAACCTTTCTTT
Found at i:70200 original size:52 final size:52
Alignment explanation
Indices: 70126--70378 Score: 190
Period size: 52 Copynumber: 4.9 Consensus size: 52
70116 CCATCTTTTT
* * *
70126 TTAAGTCTAATATCACTGGCCTTGAATCAGCACATTGGCACATTTTTCTTTC
1 TTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * * * *
70178 TTAAGTCCAATGTCGCTAGCCTTAAATCAGCATATTGGTACCTTTGTC-ATC
1 TTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * * *
70229 TTTAAGTCCGATATCACTAGCCTTGAATCAACATATTGGCATCTTTATCATTC
1 -TTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
* * * * * **
70282 CTAAGCCCAATATCGCTGGCCTTGAGTCAGCACATAAGCACCTTTTTCATTT-
1 TTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTTTC-TTTC
* * * * *
70334 TTAAG-CTCAATGTTACTGGCCTTAAAT-ATGCACATTAGCACCTTT
1 TTAAGTC-CAATATCACTAGCCTTGAATCA-GCACATTGGCACCTTT
70379 GTCATTATAA
Statistics
Matches: 157, Mismatches: 39, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
51 4 0.03
52 149 0.95
53 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (52 bp):
TTAAGTCCAATATCACTAGCCTTGAATCAGCACATTGGCACCTTTTTCTTTC
Found at i:70356 original size:104 final size:103
Alignment explanation
Indices: 70123--70356 Score: 245
Period size: 104 Copynumber: 2.2 Consensus size: 103
70113 AAACCATCTT
* * * * *
70123 TTTTTAAGTCTAATATCACTGGCCTTGAATCAGCACATTGGCACATTTTTCTTTCTTAAGTCCAA
1 TTTTTAAGTC-AATATCACTGGCCTTGAATCAACACATTGGCACATTTATCATTCCTAAGCCCAA
* * ** *
70188 TGTCGCTAGCCTTAAATCAGCATATTGGTACCTTTGTCA
65 TATCGCTAGCCTTAAATCAGCACATAAGCACCTTTGTCA
* * * *
70227 TCTTTAAGTCCGATATCACTAGCCTTGAATCAACATATTGGCATC-TTTATCATTCCTAAGCCCA
1 TTTTTAAGT-CAATATCACTGGCCTTGAATCAACACATTGGCA-CATTTATCATTCCTAAGCCCA
* * * *
70291 ATATCGCTGGCCTTGAGTCAGCACATAAGCACCTTTTTCA
64 ATATCGCTAGCCTTAAATCAGCACATAAGCACCTTTGTCA
* *
70331 TTTTTAAGCTCAATGTTACTGGCCTT
1 TTTTTAAG-TCAATATCACTGGCCTT
70357 AAATATGCAC
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
104 101 0.97
105 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (103 bp):
TTTTTAAGTCAATATCACTGGCCTTGAATCAACACATTGGCACATTTATCATTCCTAAGCCCAAT
ATCGCTAGCCTTAAATCAGCACATAAGCACCTTTGTCA
Found at i:70898 original size:20 final size:20
Alignment explanation
Indices: 70870--70944 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
70860 TTTTACCTTG
70870 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
70890 ATATATCGATACATATATGA
1 ATGTATCGATACATTTTTCA
* * *
70910 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
*
70930 ATGTATCAATACATT
1 ATGTATCGATACATT
70945 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:70942 original size:40 final size:39
Alignment explanation
Indices: 70870--70947 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
70860 TTTTACCTTG
* * *
70870 ATGTATCGATACATTTTTCAATATATCGATACATATATGA
1 ATGTATCGATACATTCTACAATATATCAATACAT-TATGA
* *
70910 ATGTATCGATATATTCTACAATGTATCAATACATTATG
1 ATGTATCGATACATTCTACAATATATCAATACATTATG
70948 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCAATACATTATGA
Found at i:70986 original size:20 final size:20
Alignment explanation
Indices: 70961--71034 Score: 148
Period size: 20 Copynumber: 3.7 Consensus size: 20
70951 TTTTACCTAG
70961 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
70981 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
71001 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
71021 ATGTATCGATACAT
1 ATGTATCGATACAT
71035 CTAGTTAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:71024 original size:91 final size:91
Alignment explanation
Indices: 70859--71034 Score: 223
Period size: 91 Copynumber: 1.9 Consensus size: 91
70849 AAAAGTCACA
* ** *
70859 TTTTTACCTTGATGTATCGATACATTTTTCAATATATCGATACATATATGAATGTATCGATATAT
1 TTTTTACCTAGATGTATCGATACATTAATCAATATATCGATACATATATGAATGTATCGATACAT
*
70924 TCTACAATGTATCAATACATTATGTC
66 TCAACAATGTATCAATACATTATGTC
*
70950 TTTTTACCTAGATGTATCGATACATTGAAT-AATGTATCGATACAT-TGAAT-AATGTATCGATA
1 TTTTTACCTAGATGTATCGATACATT-AATCAATATATCGATACATAT--ATGAATGTATCGATA
* * *
71012 CATTGAATAATGTATCGATACAT
63 CATTCAACAATGTATCAATACAT
71035 CTAGTTAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 69 0.95
92 3 0.04
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (91 bp):
TTTTTACCTAGATGTATCGATACATTAATCAATATATCGATACATATATGAATGTATCGATACAT
TCAACAATGTATCAATACATTATGTC
Found at i:79488 original size:54 final size:54
Alignment explanation
Indices: 79404--80691 Score: 524
Period size: 59 Copynumber: 22.6 Consensus size: 54
79394 AGTGTGACCT
* *
79404 CTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* *
79458 TTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CC
* *
79513 CTTTTAAGACCACAACTCCGTGGCACCGTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * *
79567 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACC
* * *
79622 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTTAGTCCATAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * *
79677 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAATCCACAACTCAGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * * * * ** * * * *
79731 CTTTCGAAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACT
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTT-TTAAGTCCACAACTCCGTGGCACC
* * * * * * * *
79787 CTTTCAAAGACCACAAGTCAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGAACTC
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTTTT-AAG-TC-CACAACTCCGTGGCAC-C
* * * ** * * * ** *
79846 CTTTCAAAGCCCACAAGTTAGTGGCACTCCTTTCAAAGCCCACAAGTTAGTGGCACT
1 CTTT-TAAGTCCACAACTCCGTGGCAC-CCTTT-TAAGTCCACAACTCCGTGGCACC
* * * * * * * *
79903 CTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTT--AAGTCCACAACTCCGTGGCACCCTTTT--AAGTCCACAACTCCGTGGCACC
* * * * * * * *
79961 CTTTCAAAGCCCACACAAGTCGGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCC
1 CTTT-TAAG-TC-CACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCA-CC
* * * ** * * ** *
80020 CTTTCAAAGCCCACGCAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACT
1 CTTT-TAAGTCCA--CAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC
* * * * * * *
80078 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTT--AAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACC
* * * * * * *
80135 CTTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTCGAAGCCCACAAGTCAGTGGCACC
1 CTTTT--AAGTCCA--CAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACC
* ** * * * * * * * *
80194 ATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTT-TTAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACC
* * ** * * * *
80250 CTTTTAAAGCCCACACAAGTTAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTC
1 CTTTT-AAG-TC-CACAACTCCGTGGCAC-CCTTT-TAAGTCCACAACTCCGTGGCAC-C
* ** * * * * * * * * *
80310 CTTTCAAAACCCAAAAGTCAGTGGCACTCTTTTCAAAGCCCATAAATCAGTGGCACT
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTTTT--AAGTCCACAACTCCGTGGCACC
* * * * * * * *
80367 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCATACAAGTCGGTGGCACC
1 CTTTT--AAGTCCACAACTCCGTGGCACCCTTT-TAAGTCC--ACAACTCCGTGGCACC
* * * * * * * **
80426 CTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTAGTGGCACC
1 CTTT-TAAGTCCACAACTCCGTGGCA-CCCTTT-TAAGTCCA--CAACTCCGTGGCACC
* * ** * * * *
80485 CTTTTAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT--AAGTCCACAACTCCGTGGCACC
* * * * * * *
80542 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCACGCAAGTCAGTGGCACC
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTTTT--AAGTCCA--CAACTCCGTGGCACC
* * * * ** * * * *
80601 CTTTTGAAGCCCACAAGTCAGTGGCACCATTGCAAAGCCCACAATTCAGTGGCACT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTT-TTAAGTCCACAACTCCGTGGCACC
* * * *
80657 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAA
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAA
80692 AGCCCACACA
Statistics
Matches: 1054, Mismatches: 125, Indels: 109
0.82 0.10 0.08
Matches are distributed among these distances:
54 121 0.11
55 135 0.13
56 154 0.15
57 136 0.13
58 207 0.20
59 286 0.27
60 15 0.01
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (54 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
Found at i:79545 original size:82 final size:81
Alignment explanation
Indices: 79404--79821 Score: 489
Period size: 82 Copynumber: 5.1 Consensus size: 81
79394 AGTGTGACCT
* * *
79404 CTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
79469 ACAACTCCATGGCACC
66 ACAACTCCATGGCACC
* *
79485 CTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGACCACAACTCCGTGGCACCGTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
79550 CACAACTCCGTGGCACC
65 CACAACTCCATGGCACC
* * *
79567 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
*
79632 CCACAACTCCGTGGCACC
64 CCACAACTCCATGGCACC
* * * * *
79650 CTTTTTAGTCCATAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAATCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
79715 ACAACT-CAGTGGCACC
66 ACAACTCCA-TGGCACC
* * * * * ** * * * * *
79731 CTTTCGAAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAG
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTT-TTAAGTCCACAACTCCGTGGCACCCTTT-TAAG
* *
79796 ACCACAAGT-CAGTGGCACC
63 TCCACAACTCCA-TGGCACC
79815 CTTTTAA
1 CTTTTAA
79822 AGCCCACACA
Statistics
Matches: 298, Mismatches: 33, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.00
81 45 0.15
82 160 0.54
83 69 0.23
84 23 0.08
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (81 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCATGGCACC
Found at i:79753 original size:28 final size:28
Alignment explanation
Indices: 79404--81110 Score: 1768
Period size: 28 Copynumber: 59.8 Consensus size: 28
79394 AGTGTGACCT
* *
79404 CTTT-AAAGCCCACAACTCCGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * *
79431 CTTT-TAAGTCCACAACTCCGTGGCA-C
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
** * *
79457 CTTTTTAAGTCCACAACTCCA-TGGCACC
1 CTTTCAAAGCCCACAAGT-CAGTGGCACC
* * * *
79485 CTTT-TAAGTCCACAACTCCGTGGCATCC
1 CTTTCAAAGCCCACAAGTCAGTGGCA-CC
* * * *
79513 CTTT-TAAGACCACAACTCCGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * *
79540 GTTT-TAAGTCCACAACTCCGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * * *
79567 CTTT-TAAGTCCATAACTCCGTGGCATCT
1 CTTTCAAAGCCCACAAGTCAGTGGCA-CC
* * * *
79595 CTTT-TAAGTCCACAACTCTGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * *
79622 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
** * * * *
79650 CTTT-TTAGTCCATAACTCTGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * *
79677 CTTT-TAAGTCCACAACTCTGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
79704 CTTTTAAA-TCCACAACTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
79731 CTTTCGAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * *
79759 ATTGCGAAGCCCACAATTCAGTGGCACT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
79787 CTTTCAAAGACCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
79815 CTTTTAAAGCCCACACAAGTCAGTGGAACTC
1 CTTTCAAAG-CC-CACAAGTCAGTGGCAC-C
*
79846 CTTTCAAAGCCCACAAGTTAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
*
79875 CTTTCAAAGCCCACAAGTTAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* *
79904 TTTTCAAAGCCCACAAATCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* *
79933 TTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
79961 CTTTCAAAGCCCACACAAGTCGGTGGCACC
1 CTTTCAAAG-CC-CACAAGTCAGTGGCACC
79991 CTTTCAAAGCCCACAAGTCAGTGGCACCC
1 CTTTCAAAGCCCACAAGTCAGTGGCA-CC
*
80020 CTTTCAAAGCCCACGCAAGTTAGTGGCACC
1 CTTTCAAAGCCCA--CAAGTCAGTGGCACC
* *
80050 CTTTTAAAGCCCACAAGTTAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
*
80079 TTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80107 CTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80135 CTTTTCAAAGCCCACGCAAGTCAGTGGCACC
1 C-TTTCAAAGCCCA--CAAGTCAGTGGCACC
*
80166 CTTTCGAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * *
80194 ATTGCGAAGCCCACAATTCAGTGGCACT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80222 CTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
80250 CTTTTAAAGCCCACACAAGTTAGTGGCACTC
1 CTTTCAAAG-CC-CACAAGTCAGTGGCAC-C
80281 CTTTCAAAGCCCACAAGTCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* *
80310 CTTTCAAAACCCAAAAGTCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* * *
80339 TTTTCAAAGCCCATAAATCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* *
80368 TTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
80396 CTTTCAAAGCCCATACAAGTCGGTGGCACC
1 CTTTCAAAGCCC--ACAAGTCAGTGGCACC
80426 CTTTCAAAGCCCACAAGTCAGTGGCACCC
1 CTTTCAAAGCCCACAAGTCAGTGGCA-CC
*
80455 CTTTCAAAGCCCACGCAAGTTAGTGGCACC
1 CTTTCAAAGCCCA--CAAGTCAGTGGCACC
* *
80485 CTTTTAAAGCCCACAAGTTAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
*
80514 TTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80542 CTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80570 CTTTTCAAAGCCCACGCAAGTCAGTGGCACC
1 C-TTTCAAAGCCCA--CAAGTCAGTGGCACC
**
80601 CTTTTGAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * *
80629 ATTGCAAAGCCCACAATTCAGTGGCACT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80657 CTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
80685 CTTTTAAAGCCCACACAAGTCAGTGGCACTC
1 CTTTCAAAG-CC-CACAAGTCAGTGGCAC-C
* * *
80716 CTTTTAAAGCTCACGCAAGTCAGTGGTACC
1 CTTTCAAAGC-C-CACAAGTCAGTGGCACC
* * * *
80746 TTTTCAAATCCCACGAGTCAGTGGCACT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
80774 CTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
80802 CTTTCAAAGCCCACGAGTTAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80830 CTTTCAAAGCCCACACAAGTCAGTGGCACTC
1 CTTTCAAAG-CC-CACAAGTCAGTGGCAC-C
80861 CTTTCAAAGCCCACGCAAGTCAGTGGCACC
1 CTTTCAAAGCCCA--CAAGTCAGTGGCACC
* * *
80891 TTTTCAAAGCCCACGAGTCAGTGGCACT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
80919 CTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* ** *
80947 CTTTC-AGGCCCATGAGTCAGTGGTACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
80974 TTTTCAAAGCCCACGAGTCAGTGGCA-C
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
81001 CTTTCAAAGCCCACAAGTTAGTGGCACT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
81029 CTTTCAAAGCCCACGAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
81057 CTTTTAAAGCCAACGCAAATCAGTGGCACC
1 CTTTCAAAGCC--CACAAGTCAGTGGCACC
* *
81087 CTTTTAAAGCTCACGCAAGTCAGT
1 CTTTCAAAGC-C-CACAAGTCAGT
81111 AACACTCTTT
Statistics
Matches: 1482, Mismatches: 151, Indels: 91
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.00
27 232 0.16
28 591 0.40
29 307 0.21
30 221 0.15
31 125 0.08
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (28 bp):
CTTTCAAAGCCCACAAGTCAGTGGCACC
Found at i:80014 original size:145 final size:144
Alignment explanation
Indices: 79687--81110 Score: 1816
Period size: 145 Copynumber: 9.9 Consensus size: 144
79677 CTTTTAAGTC
* * * * * *
79687 CACAACTCTGTGGCACCCTTTTAAA-TCCACAACTCAGTGGCACCCTTTCGAAGCCCACAAGTCA
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
* * * * *
79751 GTGGCAC-CATTGCGAAGCCCACAATTCAGTGGCACTC-TTTCAAAGACCACAAGTCAGTGGCAC
66 GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC
*
79814 CCTTTTAAAGCCCA
131 CCTTTCAAAGCCCA
* *
79828 CACAAGTCAGTGGAACTCCTTTCAAAGCCCACAAGTTAGTGGCACTCCTTTCAAAGCCCACAAGT
1 CACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGT
* *
79893 TAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC
64 CAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC
*
79958 ATCCTTTCAAAGCCCA
129 ACCCTTTCAAAGCCCA
*
79974 CACAAGTCGGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAG
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCA--CAAG
* * *
80039 TTAGTGGCACCCTTTT-AAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
63 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
80103 CACCCTTTCAAAG-CC-
128 CACCCTTTCAAAGCCCA
*
80118 CACAAGTCAGTGGCACCCTTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTCGAAGCCCACAAG
1 CACAAGTCAGTGGCACCC-TTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
* * * *
80183 TCAGTGGCAC-CATTGCGAAGCCCACAATTCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGG
63 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
*
80246 CACCCTTTTAAAGCCCA
128 CACCCTTTCAAAGCCCA
* * *
80263 CACAAGTTAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAACCCAAAAGT
1 CACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGT
* *
80328 CAGTGGCACTCTTTTCAAAGCCCATAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC
64 CAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC
*
80393 ATCCTTTCAAAGCCCA
129 ACCCTTTCAAAGCCCA
* *
80409 TACAAGTCGGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAG
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCA--CAAG
* * *
80474 TTAGTGGCACCCTTTT-AAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
63 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
80538 CACCCTTTCAAAG-CC-
128 CACCCTTTCAAAGCCCA
**
80553 CACAAGTCAGTGGCACCCTTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTGAAGCCCACAAG
1 CACAAGTCAGTGGCACCC-TTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
* * *
80618 TCAGTGGCAC-CATTGCAAAGCCCACAATTCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGG
63 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
*
80681 CACCCTTTTAAAGCCCA
128 CACCCTTTCAAAGCCCA
* * * * * *
80698 CACAAGTCAGTGGCACTCCTTTTAAAGCTCACGCAAGTCAGTGGTACCTTTTCAAATCCCACGAG
1 CACAAGTCAGTGGCAC-CCTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
* * *
80763 TCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACGAGTTAGTGG
63 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
80826 CACCCTTTCAAAGCCCA
128 CACCCTTTCAAAGCCCA
* *
80843 CACAAGTCAGTGGCACTCCTTTCAAAGCCCACGCAAGTCAGTGGCACCTTTTCAAAGCCCACGAG
1 CACAAGTCAGTGGCAC-CCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
* * **
80908 TCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTC-AGGCCCATGAGTCAGTGG
63 TCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
* *
80970 TACCTTTTCAAAG-CC-
128 CACCCTTTCAAAGCCCA
* * * *
80985 CACGAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTCAAAGCCCACGAGTCA
1 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
* * * *
81049 GTGGCA-TCCTTTT-AAAGCCAACGCAAATCAGTGGCACCCTTTT-AAAGCTCACGCAAGTCAGT
66 GTGGCACT-CTTTTCAAAGCC--CACAAGTCAGTGGCACTCTTTTCAAAGC-C-CACAAGTCAGT
81111 AACACTCTTT
Statistics
Matches: 1143, Mismatches: 97, Indels: 84
0.86 0.07 0.06
Matches are distributed among these distances:
137 1 0.00
138 45 0.04
139 3 0.00
140 28 0.02
141 20 0.02
142 23 0.02
143 116 0.10
144 186 0.16
145 406 0.36
146 252 0.22
147 63 0.06
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (144 bp):
CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
GTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC
CCTTTCAAAGCCCA
Found at i:80530 original size:435 final size:432
Alignment explanation
Indices: 79614--81054 Score: 2197
Period size: 435 Copynumber: 3.3 Consensus size: 432
79604 CCACAACTCT
* * * * * * * * *
79614 GTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-TAGTCCATAACTCTGTGGCACCC
1 GTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACTCTTTTCAAGCCCACAAGTCAGTGGCACCC
* * * * * *
79678 TTT-TAAGTCCACAACTCTGTGGCACCCTTTT-AAA-TCCACAACTCAGTGGCACCCTTTCGAAG
66 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCGAAG
*
79740 CCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGACCACAAGT
131 CCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACAAGT
* *
79805 CAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGAACTCCTTTCAAAGCCCACAAGTTAGTGG
196 CAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGG
* *
79870 CACTCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTT
261 CACTCCTTTCAAAACCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTT
79935 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCGGTGGCACCCTTTCAAAG
326 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCGGTGGCACCCTTTCAAAG
80000 CCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTA
391 CCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTA
*
80042 GTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACC
1 GTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACTCTTTTC-AAGCCCACAAGTCAGTGGCACC
80107 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTCG
65 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCG
80172 AAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACA
128 AAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACA
*
80237 AGTCAGTGGCACCCTTTTAAAGCCCACACAAGTTAGTGGCACTCCTTTCAAAGCCCACAAGTCAG
193 AGTCAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAG
* *
80302 TGGCACTCCTTTCAAAACCCAAAAGTCAGTGGCACTCTTTTCAAAGCCCATAAATCAGTGGCACT
258 TGGCACTCCTTTCAAAACCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACT
*
80367 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCATACAAGTCGGTGGCACCCTTTCA
323 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCGGTGGCACCCTTTCA
80432 AAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTA
388 AAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTA
*
80477 GTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACC
1 GTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACTCTTTTC-AAGCCCACAAGTCAGTGGCACC
*
80542 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTG
65 CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCG
*
80607 AAGCCCACAAGTCAGTGGCACCATTGCAAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACA
128 AAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACA
* *
80672 AGTCAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTTAAAGCTCACGCAAGTC
193 AGTCAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTCAAAGC-C-CACAAGTC
* * * * *
80737 AGTGGTAC-CTTTTCAAATCCCACGAGTCAGTGGCACTC-TTTCAAAGCCCACAAGTCAGTGGCA
256 AGTGGCACTCCTTTCAAAACCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCA
* * * * *
80800 -TCCTTTCAAAGCCCACGAGTTAGTGGCACCCTTTCAAAGCCCACACAAGTCAGTGGCACTCCTT
321 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCGGTGGCAC-CCTT
* *
80864 TCAAAGCCCACGCAAGTCAGTGGCA-CCTTTTCAAAGCCCACG--AGTCA
385 TCAAAGCCCA--CAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTA
* * * * ** * *
80911 GTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAGGCCCATGAGTCAGTGGTACCT
1 GTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACTCTTTTCAAGCCCACAAGTCAGTGGCACCC
* * * *
80975 TTTCAAAGCCCACGAGTCAGTGGCA-CC-TTTCAAAGCCCACAAGTTAGTGGCACTCTTTCAAAG
66 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCGAAG
*
81038 CCCACGAGTCAGTGGCA
131 CCCACAAGTCAGTGGCA
81055 TCCTTTTAAA
Statistics
Matches: 941, Mismatches: 60, Indels: 24
0.92 0.06 0.02
Matches are distributed among these distances:
428 72 0.08
430 33 0.04
431 26 0.03
432 45 0.05
433 8 0.01
434 89 0.09
435 598 0.64
436 43 0.05
437 27 0.03
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.22
Consensus pattern (432 bp):
GTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACTCTTTTCAAGCCCACAAGTCAGTGGCACCC
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCGAAG
CCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCACAAGT
CAGTGGCACCCTTTTAAAGCCCACACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGG
CACTCCTTTCAAAACCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTT
TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCGGTGGCACCCTTTCAAAG
CCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACGCAAGTTA
Found at i:81768 original size:20 final size:20
Alignment explanation
Indices: 81740--81814 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
81730 TTTTACCTTG
81740 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
81760 ATATATCGATACATATATGA
1 ATGTATCGATACATTTTTCA
* * *
81780 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
*
81800 ATGTATCAATACATT
1 ATGTATCGATACATT
81815 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:81812 original size:40 final size:39
Alignment explanation
Indices: 81740--81817 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
81730 TTTTACCTTG
* * *
81740 ATGTATCGATACATTTTTCAATATATCGATACATATATGA
1 ATGTATCGATACATTCTACAATATATCAATACAT-TATGA
* *
81780 ATGTATCGATATATTCTACAATGTATCAATACATTATG
1 ATGTATCGATACATTCTACAATATATCAATACATTATG
81818 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCAATACATTATGA
Found at i:85550 original size:13 final size:13
Alignment explanation
Indices: 85532--85556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85522 TAATTCTTCA
85532 TGTATCGATACAT
1 TGTATCGATACAT
85545 TGTATCGATACA
1 TGTATCGATACA
85557 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:87668 original size:20 final size:20
Alignment explanation
Indices: 87621--87671 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
87611 AGCTACCTGG
* *
87621 TTGCGACCTGAGTGTGCCGA
1 TTGCGACTTGGGTGTGCCGA
87641 TTGCGACTTGGGTGTGCCGA
1 TTGCGACTTGGGTGTGCCGA
87661 TTGCGACTTGG
1 TTGCGACTTGG
87672 AGAGGCTGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.22, G:0.37, T:0.29
Consensus pattern (20 bp):
TTGCGACTTGGGTGTGCCGA
Found at i:90796 original size:21 final size:21
Alignment explanation
Indices: 90745--90796 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
90735 ATCACATTTT
*
90745 GGTCCAAATGTATCGATACAT
1 GGTCCAAATGTATCGATACAA
* *
90766 TGT-TAGAATGTATCGATACAA
1 GGTCCA-AATGTATCGATACAA
*
90787 GGTCCCAATG
1 GGTCCAAATG
90797 GTCAAAAATT
Statistics
Matches: 23, Mismatches: 6, Indels: 4
0.70 0.18 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (21 bp):
GGTCCAAATGTATCGATACAA
Found at i:90861 original size:13 final size:13
Alignment explanation
Indices: 90843--90867 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90833 CATAAAATGT
90843 TGTATCGATACAA
1 TGTATCGATACAA
90856 TGTATCGATACA
1 TGTATCGATACA
90868 TATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:90883 original size:32 final size:33
Alignment explanation
Indices: 90823--90888 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
90813 TTCAACGATT
90823 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
** *
90856 TGTATCGATACAT-ATTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
90888 T
1 T
90889 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:90947 original size:13 final size:13
Alignment explanation
Indices: 90929--90953 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90919 ATTACTCAAA
90929 TGTATCGATACAT
1 TGTATCGATACAT
90942 TGTATCGATACA
1 TGTATCGATACA
90954 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:91089 original size:52 final size:52
Alignment explanation
Indices: 90962--91090 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
90952 CACTGATCTT
* * *
90962 TGTATCGATACATGTAGGCAAATCTACCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
* *
91014 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
*
91066 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
91091 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
Found at i:100740 original size:19 final size:20
Alignment explanation
Indices: 100695--100741 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
100685 AAATTCTATT
100695 GATACAATAAGTGAATGTATC
1 GATAC-ATAAGTGAATGTATC
*
100716 GATACATAAGTGAAT-TATG
1 GATACATAAGTGAATGTATC
100735 GATACAT
1 GATACAT
100742 GTATGAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 10 0.40
20 10 0.40
21 5 0.20
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.30
Consensus pattern (20 bp):
GATACATAAGTGAATGTATC
Found at i:100912 original size:52 final size:52
Alignment explanation
Indices: 100839--100983 Score: 218
Period size: 52 Copynumber: 2.8 Consensus size: 52
100829 ACATTTTCGG
* *
100839 TTTGATCCAAATGTATCGATACATTCTTCATTGTAACGATACATTATGGGTT
1 TTTGACCCAAATGTATCGATACATTCTTCATTGTATCGATACATTATGGGTT
* * *
100891 TTTGACCCAAATGTATTGATACATTATTCATTGTATCGATACATTCTGGGTT
1 TTTGACCCAAATGTATCGATACATTCTTCATTGTATCGATACATTATGGGTT
* * *
100943 TTTTACCTAAATGTATCGATACATTCTTCAATGTATCGATA
1 TTTGACCCAAATGTATCGATACATTCTTCATTGTATCGATA
100984 TATCTAGTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 83 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (52 bp):
TTTGACCCAAATGTATCGATACATTCTTCATTGTATCGATACATTATGGGTT
Found at i:104548 original size:11 final size:11
Alignment explanation
Indices: 104532--104574 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
104522 CAATCAATTA
*
104532 ATTAATTTTTT
1 ATTAATATTTT
104543 ATTAATATTTT
1 ATTAATATTTT
*
104554 AAT-A-ATTTT
1 ATTAATATTTT
104563 ATTAATATTTT
1 ATTAATATTTT
104574 A
1 A
104575 AATTTATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 18 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:105181 original size:26 final size:26
Alignment explanation
Indices: 105134--105184 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
105124 AATATAATAA
** *
105134 TTAATAAATTTATTTATTTATTATTT
1 TTAATAAATTTATAAATATATTATTT
*
105160 TTAATATATTTATAAATATATTATT
1 TTAATAAATTTATAAATATATTATT
105185 ATATATAGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (26 bp):
TTAATAAATTTATAAATATATTATTT
Found at i:105546 original size:23 final size:21
Alignment explanation
Indices: 105505--105556 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 21
105495 AACAATCATC
105505 TTATTTT-TATATTTTTATAA
1 TTATTTTATATATTTTTATAA
105525 TTATTTTATATAATTTTTTATAA
1 TTATTTTATAT-A-TTTTTATAA
105548 TTACTTTTA
1 TTA-TTTTA
105557 ATTAAACGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.25
21 3 0.11
22 1 0.04
23 12 0.43
24 5 0.18
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (21 bp):
TTATTTTATATATTTTTATAA
Found at i:105555 original size:13 final size:12
Alignment explanation
Indices: 105514--105556 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
105504 CTTATTTTTA
105514 TATTTTTATAAT
1 TATTTTTATAAT
105526 TATTTTATATAA-
1 TATTTT-TATAAT
105538 T-TTTTTATAAT
1 TATTTTTATAAT
*
105549 TACTTTTA
1 TATTTTTA
105557 ATTAAACGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 5 0.19
11 5 0.19
12 12 0.44
13 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTTTTATAAT
Found at i:105715 original size:18 final size:18
Alignment explanation
Indices: 105668--105715 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
105658 AACCAAAAAA
105668 CAAAGAGCAAGAGCAAAAGC
1 CAAAGA-CAA-AGCAAAAGC
* * *
105688 CAACGCCAAAGCCAAAGC
1 CAAAGACAAAGCAAAAGC
105706 CAAAGACAAA
1 CAAAGACAAA
105716 ACATTGTTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 16 0.70
19 3 0.13
20 4 0.17
ACGTcount: A:0.54, C:0.27, G:0.19, T:0.00
Consensus pattern (18 bp):
CAAAGACAAAGCAAAAGC
Found at i:106245 original size:23 final size:25
Alignment explanation
Indices: 106198--106244 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
106188 TACTCAGTTA
106198 ATTTTTAATATATTAAAATTAAAAT
1 ATTTTTAATATATTAAAATTAAAAT
106223 ATTTTTAA-A-ATTATAAATTAAA
1 ATTTTTAATATATTA-AAATTAAA
106245 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 9 0.43
25 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTTTTAATATATTAAAATTAAAAT
Found at i:106703 original size:27 final size:25
Alignment explanation
Indices: 106633--106720 Score: 79
Period size: 27 Copynumber: 3.4 Consensus size: 25
106623 ACAAAATAAC
106633 AAAA-AAAAATTAAAATATAATATTA
1 AAAATAAAAATTAAAATA-AATATTA
* *
106658 AAAATAATATAAATAAAATAAATGTTA
1 AAAATAA-A-AATTAAAATAAATATTA
*
106685 AAAATAAAAATTTATAAATAAAAATTA
1 AAAATAAAAA-TTA-AAATAAATATTA
**
106712 TTAATAAAA
1 AAAATAAAA
106721 TAAATTTACA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
25 6 0.12
26 5 0.10
27 31 0.61
28 9 0.18
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (25 bp):
AAAATAAAAATTAAAATAAATATTA
Found at i:106705 original size:14 final size:13
Alignment explanation
Indices: 106637--106720 Score: 55
Period size: 13 Copynumber: 6.3 Consensus size: 13
106627 AATAACAAAA
106637 AAAAATTA-AAAT
1 AAAAATTATAAAT
* *
106649 ATAATATTAAAAAT
1 A-AAAATTATAAAT
*
106663 AATATAAATA-AAAT
1 AA-A-AATTATAAAT
** *
106677 AAATGTTAAAAAT
1 AAAAATTATAAAT
106690 AAAAATTTATAAAT
1 AAAAA-TTATAAAT
*
106704 AAAAATTATTAAT
1 AAAAATTATAAAT
106717 AAAA
1 AAAA
106721 TAAATTTACA
Statistics
Matches: 56, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
12 3 0.05
13 26 0.46
14 24 0.43
15 3 0.05
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (13 bp):
AAAAATTATAAAT
Found at i:107060 original size:2 final size:2
Alignment explanation
Indices: 107053--107091 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
107043 TTTCTCAACG
* *
107053 TC TC TC TC TC TC TC AC TT TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
107092 GATCAAAGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.03, C:0.46, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:113459 original size:28 final size:28
Alignment explanation
Indices: 113427--113518 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
113417 ATATTATATT
* *
113427 AAAATATGTATATATAATAAATTATTAA
1 AAAATATATATATATAATAAATTAATAA
* *
113455 AAAATATATATTTATATTAAA-TAATAA
1 AAAATATATATATATAATAAATTAATAA
* * * *
113482 AATATATTTATATTAAAAAATAAATTAATAT
1 AA-A-ATATATA-TATATAATAAATTAATAA
113513 AAAATA
1 AAAATA
113519 ATTAAAAAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
27 7 0.14
28 19 0.39
29 8 0.16
30 8 0.16
31 7 0.14
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (28 bp):
AAAATATATATATATAATAAATTAATAA
Found at i:113486 original size:23 final size:23
Alignment explanation
Indices: 113449--113505 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
113439 TATAATAAAT
113449 TATTAAAAAAT---ATATATTTA
1 TATTAAAAAATAAAATATATTTA
*
113469 TATTAAATAATAAAATATATTTA
1 TATTAAAAAATAAAATATATTTA
113492 TATTAAAAAATAAA
1 TATTAAAAAATAAA
113506 TTAATATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 10 0.31
23 22 0.69
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TATTAAAAAATAAAATATATTTA
Found at i:113503 original size:18 final size:17
Alignment explanation
Indices: 113470--113516 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
113460 ATATATTTAT
*
113470 ATTAA-ATAATAAAATAT
1 ATTAATATAA-AAAATAA
*
113487 ATTTATATTAAAAAATAA
1 ATTAATA-TAAAAAATAA
113505 ATTAATATAAAA
1 ATTAATATAAAA
113517 TAATTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 9 0.36
18 13 0.52
19 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTAATATAAAAAATAA
Found at i:115449 original size:21 final size:21
Alignment explanation
Indices: 115415--115454 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
115405 ATATTTTATT
115415 TAAATTTAATTATAAAATATA
1 TAAATTTAATTATAAAATATA
115436 TAAATATTAA-TATAAAATA
1 TAAAT-TTAATTATAAAATA
115455 ATTTTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTTAATTATAAAATATA
Found at i:116770 original size:13 final size:13
Alignment explanation
Indices: 116752--116808 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
116742 TTCAACGATT
116752 TGTATCGATACAA
1 TGTATCGATACAA
116765 TGTATCGATACATAA
1 TGTATCGATAC--AA
116780 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
116797 TGTATCGATACA
1 TGTATCGATACA
116809 TAAGTTTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:116789 original size:19 final size:18
Alignment explanation
Indices: 116765--116826 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 18
116755 ATCGATACAA
116765 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
116784 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
116797 TGTATCGATACATAAGTT
1 TGTATCGATACATAAGTT
*
116815 TATATCGATACA
1 TGTATCGATACA
116827 ATATATCACT
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
18 11 0.30
19 11 0.30
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:116792 original size:32 final size:31
Alignment explanation
Indices: 116750--116833 Score: 141
Period size: 32 Copynumber: 2.7 Consensus size: 31
116740 ATTTCAACGA
116750 TTTGTATCGATACAATGTATCGATACATAAG
1 TTTGTATCGATACAATGTATCGATACATAAG
116781 TGTTGTATCGATACAATGTATCGATACATAAG
1 T-TTGTATCGATACAATGTATCGATACATAAG
* *
116813 TTTATATCGATACAATATATC
1 TTTGTATCGATACAATGTATC
116834 ACTACGAAGC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
31 19 0.38
32 31 0.62
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTGTATCGATACAATGTATCGATACATAAG
Found at i:116957 original size:52 final size:52
Alignment explanation
Indices: 116912--117040 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
116902 CACTGATCTT
116912 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
116964 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
117016 TGTATTGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
117041 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:122588 original size:14 final size:15
Alignment explanation
Indices: 122571--122599 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
122561 GATAAAGTGT
122571 TTGAAAAAAA-AAAA
1 TTGAAAAAAATAAAA
122585 TTGAAAAAAATAAAA
1 TTGAAAAAAATAAAA
122600 AAATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
TTGAAAAAAATAAAA
Found at i:122599 original size:8 final size:8
Alignment explanation
Indices: 122574--122614 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
122564 AAAGTGTTTG
122574 AAAAA-AA
1 AAAAATAA
*
122581 AAAATTGAA
1 AAAAAT-AA
122590 AAAAATAA
1 AAAAATAA
122598 AAAAATAA
1 AAAAATAA
122606 AAAAATAA
1 AAAAATAA
122614 A
1 A
122615 TGTATCGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 4 0.13
8 19 0.63
9 7 0.23
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:122639 original size:21 final size:21
Alignment explanation
Indices: 122613--122669 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
122603 TAAAAAAATA
122613 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
* *
122634 AATGTATCAATACATTTGTGG
1 AATGTATCGATACATTTGTAG
122655 AATGTATCGATACAT
1 AATGTATCGATACAT
122670 CCTACAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:122749 original size:19 final size:19
Alignment explanation
Indices: 122725--122792 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
122715 AATTCAATAA
122725 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
122744 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
122759 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
122776 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
122793 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Done.