genome.fa.s1971.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1971
Parameters: 2 7 7 80 10 50 1000
Length:  65231

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4508--4558	19	2.6	20	87	3	77	33	15	19	31	1.93
5588--5628	21	1.9	22	95	5	75	31	24	14	29	1.95
5659--5822	20	7.8	20	79	15	136	27	16	14	41	1.87
8177--8250	28	2.7	27	81	8	87	22	29	20	27	1.98
8126--8434	107	2.9	108	80	3	356	25	28	16	29	1.97
8281--8357	28	2.8	28	81	0	91	20	31	23	24	1.98
9080--9153	20	3.7	20	81	3	103	35	13	20	31	1.91
9098--9173	21	3.7	21	82	3	109	40	11	18	28	1.86
9080--9173	41	2.3	41	100	0	188	38	12	19	29	1.89
9212--9237	13	2.0	13	100	0	52	38	15	15	30	1.88
14448--14505	19	2.9	18	74	18	53	56	1	0	41	1.09
15277--15314	19	2.0	19	90	10	60	44	0	0	55	0.99
15755--15820	16	3.9	17	75	22	68	40	0	0	59	0.98
15754--15826	38	1.9	38	83	5	94	41	0	0	58	0.98
15836--15889	8	6.4	8	77	12	54	29	0	0	70	0.88
15845--15889	18	2.6	16	83	13	54	33	0	0	66	0.92
15761--15901	35	4.1	33	72	16	101	36	0	0	61	1.06
15845--15901	16	3.4	15	76	21	51	35	1	0	63	1.05
21891--21927	1	37.0	1	100	0	74	100	0	0	0	0.00
22399--22423	13	1.9	13	100	0	50	44	0	8	48	1.32
22434--22510	33	2.3	32	73	13	75	45	0	6	48	1.28
22651--22701	25	2.0	25	92	0	84	52	0	1	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22848--22893	19	2.6	17	80	19	51	54	0	2	43	1.12
22849--22895	18	2.5	18	86	6	67	57	0	2	40	1.11
23963--24015	21	2.6	21	87	3	81	58	0	1	39	1.09
23963--24021	21	2.7	22	82	12	77	57	0	1	40	1.09
24584--24629	23	2.0	23	83	8	58	69	6	4	19	1.28
26189--26234	17	2.8	17	75	15	51	50	0	0	50	1.00
26680--26734	24	2.2	24	84	15	69	43	1	0	54	1.10
26972--27006	6	5.8	6	100	0	70	17	0	0	82	0.66
27232--27268	17	2.2	17	90	0	56	40	0	0	59	0.97
27418--27443	10	2.6	10	100	0	52	73	0	0	26	0.84
29359--29408	3	16.7	3	91	0	73	64	2	4	30	1.23
30309--30367	23	2.5	25	81	8	70	52	1	0	45	1.10
30332--30404	23	2.9	23	78	13	65	52	4	0	43	1.20
31278--31305	14	2.0	14	100	0	56	57	0	0	42	0.99
31293--31351	21	2.8	21	80	10	57	47	3	1	47	1.29
32266--32290	13	1.9	13	100	0	50	32	16	16	36	1.90
32279--32424	52	2.8	51	87	10	215	34	19	18	28	1.95
35127--35784	52	12.6	52	93	0	1091	24	26	15	33	1.95
36388--36835	52	8.6	52	94	0	770	24	26	15	33	1.95
37032--37056	13	1.9	13	100	0	50	36	16	16	32	1.90
37012--37078	33	2.0	33	88	0	98	32	11	14	40	1.83
37119--37143	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37152--37272	52	2.3	52	97	0	224	34	18	18	28	1.94
44191--44217	14	1.9	14	100	0	54	77	7	7	7	1.12
44185--44235	16	3.2	16	72	16	52	76	15	3	3	1.08
44482--44515	17	2.0	17	88	0	50	82	8	8	0	0.85
45341--45378	16	2.3	17	86	4	51	44	23	2	28	1.67
45478--45630	32	4.9	31	84	8	177	24	30	15	29	1.96
45478--45639	64	2.6	62	83	8	202	22	32	14	30	1.94
45614--45729	34	3.4	34	92	1	180	19	36	13	30	1.91
45706--45766	28	2.2	27	82	2	68	22	31	13	32	1.92
45770--45838	32	2.2	32	92	5	115	28	34	17	18	1.94
45873--47008	52	22.0	52	93	2	1849	25	26	15	33	1.95
47775--47799	13	1.9	13	100	0	50	36	16	16	32	1.90
47755--47821	33	2.0	33	88	0	98	32	11	14	40	1.83
47862--47886	13	1.9	13	100	0	50	32	16	16	36	1.90
47895--48015	52	2.3	52	97	0	224	34	18	18	28	1.94
58338--58379	19	2.2	20	86	4	59	7	19	50	23	1.72

Tables:   1

The End!