Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1974
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8377
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Found at i:2122 original size:476 final size:476
Alignment explanation
Indices: 4--8336 Score: 15384
Period size: 476 Copynumber: 17.5 Consensus size: 476
1 CCA
*
4 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTT-GTGTCACAAGAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* * *
68 ATTCCGCCATTTTTG-TAGAATGAACGTTTG-CTCTTAAATAAGACAAAC-AGAATGGTCACACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
* *
130 -ATCCCCATTCTTTTCAGGATTAGGCACCATAACTGTAGTCTT-TCCTAAGTATGCATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
193 AAGCTTTGG-TTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
257 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCA-CTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
*
321 G-TATCCTC-TTAGGATAAATGATATTGATGATTTTCTTCTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
*
384 ATTTTCCTT-AAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTGGTAACAATCTCCA
391 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
*
448 TT-TTTTCAAGATTTGCCCCC
456 TTCTTTTCAAGATTTGCACCC
468 AAAAAACACATTCCCTTCATTAGGATACACGACCATTGATGC-TTGGTGTCAC-AGAAAAAGCTT
1 -AAAAACACATTCCCTTCATTAGGATACACGA-CATTGATGCTTTGGTGTCACAAGAAAAA-CTT
*
531 TTCATTCCGCCTATTTTTGATAGAATGAAAGTTTGCCTCTTAAAATAAGACAAAC-AGAAT-GTC
63 TTCATTACGCC-ATTTTTGATAGAATGAAAGTTTGCCTCTT-AAATAAGACAAACAAGAATGGTC
* *
594 AGACTAATCCCCATTC-TTTCAGGATTAGGCACCATAAATGTAGTCTTCTCAT-AGTATGAATGA
126 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGA
*
657 TAATGAAGCTTTGGCTTCTCAAGAAAGG-TTTCTTTCGACCTATTATTATAAAGTCTATGTCTGT
191 TAATGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGT
721 GCCTAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATA
256 GCCTAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATA
786 AACACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTG
321 AACACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTG
851 CCCTTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAAT
386 CCCTTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAAT
916 CTCCATTCTTTTCAAGATTTGCACCC
451 CTCCATTCTTTTCAAGATTTGCACCC
*
942 AAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* * *
1007 ATTATGCAATTTTTGATAGAATG-AAGTTTGCCTCTTAAATAAGAC-AACATGAATGGTCATACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
*
1070 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATACTAGTCTTCTCATAAGTATGCATGATAAT
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAAT-GTAGTCTTCTCATAAGTATGCATGATAAT
1135 GAAGCTTTGGTTTCTCAAG-AAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCT
195 GAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCT
*
1199 AAAATGTGCCAACCAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACA
260 AAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACA
1264 CGTTATCCTCATTAGGAT-AATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
325 CGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
1328 TATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
390 TATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
1393 ATTCTTTTCAAGATTTGCACCC
455 ATTCTTTTCAAGATTTGCACCC
* *
1415 AAAAACACATTCCTTCCTCGTTAGGATACACGACATTGATGCTTTGGTGTTCACAAGAAAAACTT
1 AAAAACACATTCC--CTTCATTAGGATACACGACATTGATGCTTTGGTG-TCACAAGAAAAACTT
*
1480 TTCATTACGCCATTTTTGATTAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCA
63 TTCATTACGCCATTTTTGA-TAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCA
*
1545 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGTATGCATGAT
127 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGAT
1610 AATGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTG
192 AATGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTG
1675 CCTAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAA
257 CCTAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAA
1740 ACACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC
322 ACACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC
1805 CCTTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATC
387 CCTTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATC
1870 TCCATTCTTTTCAAGATTTGCACCC
452 TCCATTCTTTTCAAGATTTGCACCC
* *
1895 AAAAACACATTCTCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* *
1960 ATTATGCAATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
2025 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
2090 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
2155 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
2220 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
2285 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
391 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
2350 TTCTTTTCAAGATTTGCACCC
456 TTCTTTTCAAGATTTGCACCC
*
2371 AAAAACACATTCTCC-TCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
1 AAAAACACATTC-CCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
* * * *
2435 CATTATGCAATTTTTGATAGAATGAAAGTTTGCCTCATAAATAAGACAAACATGAATGGTCATAC
65 CATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATAC
2500 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAATAGTAGTCTTCTCATAAGTATGCATGATAA
130 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAAT-GTAGTCTTCTCATAAGTATGCATGATAA
2565 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
194 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
2630 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
259 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
2695 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
324 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
2760 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
389 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
2825 CATTCTTTTCAAGATTTGCACCC
454 CATTCTTTTCAAGATTTGCACCC
*
2848 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* *
2913 ATTCCGCCTATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATAC
66 ATTACGCC-ATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATAC
2978 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTGTAGTCTTCTCATAAGTATGCATGATAA
130 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-TGTAGTCTTCTCATAAGTATGCATGATAA
*
3043 TGAAGCTTTGGCTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
194 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
3108 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
259 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
3173 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
324 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
3238 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
389 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
3303 CATTCTTTTCAAGATTTGCACCC
454 CATTCTTTTCAAGATTTGCACCC
3326 AAAAACACATTCCCTTCAGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
1 AAAAACACATTCCCTTCA-TTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
* *
3391 CATTCCGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATAC
65 CATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATAC
3456 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAATAGTAGTCTTCTCATAAGTATGCATGATAA
130 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAAT-GTAGTCTTCTCATAAGTATGCATGATAA
3521 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
194 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
3586 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
259 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
3651 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
324 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
3716 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
389 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
3781 CATTCTTTTCAAGATTTGCACCC
454 CATTCTTTTCAAGATTTGCACCC
*
3804 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* *
3869 ATTACGCTATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCAGACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
3934 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
3999 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
4064 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
4129 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
4194 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
391 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
4259 TTCTTTTCAAGATTTGCACCC
456 TTCTTTTCAAGATTTGCACCC
*
4280 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* *
4345 ATTCCGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
*
4410 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGTATGCATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
4475 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
4540 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
4605 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
4670 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
391 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
4735 TTCTTTTCAAGATTTGCACCC
456 TTCTTTTCAAGATTTGCACCC
* *
4756 AAAAACACATTCTCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
*
4821 ATTCCGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
4886 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
4951 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
5016 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
5081 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
5146 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
391 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
5211 TTCTTTTCAAGATTTGCACCC
456 TTCTTTTCAAGATTTGCACCC
5232 AAAAACACATTCTCC-TCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
1 AAAAACACATTC-CCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
* * *
5296 CATTCCGCCATTTTAGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATAC
65 CATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATAC
*
5361 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAATATAGTCTTCTCATAAGTATGCATGATAAT
130 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAAT
5426 GAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCT
195 GAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCT
5491 AAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACA
260 AAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACA
5556 CGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
325 CGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
5621 TATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
390 TATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
5686 ATTCTTTTCAAGATTTGCACCC
455 ATTCTTTTCAAGATTTGCACCC
*
5708 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* *
5773 ATTACGCTATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAAC-AGAATGGTCAGACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
5837 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACTGTAGTCTTCTCATAAGTATGCATGATAAT
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAA-TGTAGTCTTCTCATAAGTATGCATGATAAT
5902 GAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCT
195 GAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCT
5967 AAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACA
260 AAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACA
6032 CGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
325 CGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
6097 TATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
390 TATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
6162 ATTCTTTTCAAGATTTGCACCC
455 ATTCTTTTCAAGATTTGCACCC
*
6184 AAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* * *
6249 ATTCCGCCATTTTAGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
*
6314 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATATAGTCTTCTCATAAGTATGCATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
6379 AAGCTTTGG-TTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
6443 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
6508 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
6573 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
391 ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
6638 TTCTTTTCAAGATTTGCACCC
456 TTCTTTTCAAGATTTGCACCC
6659 AAAAACACATTCCCTTCAGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
1 AAAAACACATTCCCTTCA-TTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
* *
6724 CATTCCGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATAC
65 CATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATAC
*
6789 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAAGTATAGTCTTCTCATAAGTATGCATGATAA
130 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-TGTAGTCTTCTCATAAGTATGCATGATAA
6854 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
194 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
6919 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
259 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAAC
6984 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
324 ACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
7049 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
389 TTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTC
7114 CATTCTTTTCAAGATTTGCACCC
454 CATTCTTTTCAAGATTTGCACCC
*
7137 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
* *
7202 ATTACGCTATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCAGACT
66 ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
*
7267 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATACATGATAATG
131 AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
*
7332 AAGCTTTGGCTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
196 AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
*
7397 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCAC-AACCTTGTGAATGGGCCTTATAAACAC
261 AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
7461 GTTATCCTCATTAGGATAAATGATA-TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
326 GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
7525 ATTTTCCGTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
391 ATTTTCC-TTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCC
7590 ATTCTTTTCAAGATTTGCACCC
455 ATTCTTTTCAAGATTTGCACCC
*
7612 AAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAA-AAAAGC-TTT
1 -AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
* *
7675 CATTACGCTATTTTTGATTAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCAGA
65 CATTACGCCATTTTTGA-TAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATA
*
7740 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATACATGATAA
129 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAA
*
7805 TGAAGCTTTGGCTTCTCAAGAAAGGTTTTCTTTCGACCTA-TATTATAAAGTCTATGTCTGTGCC
194 TGAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCC
7869 T-AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTACACCTTGTGAATGGGCCTTATAAA
259 TAAAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACT-CACCTTGTGAATGGGCCTTATAAA
7933 CACG-TAT-CT-ATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAATCTTTTCTTTGC
323 CACGTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG-AAATCTTTTCTTTGC
7995 CCTTA-TTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATC
387 CCTTATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATC
8059 TCCATTCTTTTCAAGA-TTGCACCC
452 TCCATTCTTTTCAAGATTTGCACCC
*
8083 AAAAACACCATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAA-AAAAGCTTTT
1 AAAAACA-CATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTT
*
8147 CATTACGCTATTTTTGATTAGAATGAAAGTTTGCCTCTT-AATAAGACAAAACAAGAATGGTCAT
65 CATTACGCCATTTTTGA-TAGAATGAAAGTTTGCCTCTTAAATAAGAC-AAACAAGAATGGTCAT
*
8211 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGT-TTCTCATAAGTATGCATGATA
128 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATA
*
8275 ATGAAGC-TTGGCTTTCTCAAGAAAGGTTTTCTTTCGAACCGA-TATTATAAAAGTCTATGTCT
193 ATGAAGCTTTGG-TTTCTCAAGAAAGGTTTTCTTTCG-ACCTATTATTAT-AAAGTCTATGTCT
8337 TTGGGCCTTT
Statistics
Matches: 7715, Mismatches: 95, Indels: 108
0.97 0.01 0.01
Matches are distributed among these distances:
465 39 0.01
466 30 0.00
467 7 0.00
468 14 0.00
469 150 0.02
470 93 0.01
471 156 0.02
472 305 0.04
473 346 0.04
474 292 0.04
475 684 0.09
476 3205 0.42
477 787 0.10
478 1228 0.16
479 234 0.03
480 145 0.02
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (476 bp):
AAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAACTTTTC
ATTACGCCATTTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACT
AATCCCCATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGTATGCATGATAATG
AAGCTTTGGTTTCTCAAGAAAGGTTTTCTTTCGACCTATTATTATAAAGTCTATGTCTGTGCCTA
AAATGTGCCAAACAAGGAATCTAGTATTGATCTTCACTCACCTTGTGAATGGGCCTTATAAACAC
GTTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTT
ATTTTCCTTAAAATCAAAGCTCAACCTTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCA
TTCTTTTCAAGATTTGCACCC
Done.