genome.fa.s1975.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1975
Parameters: 2 7 7 80 10 50 1000
Length:  226568

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--63433	477	133.0	476	88	2	83102	30	19	14	36	1.91
50815--50890	40	1.9	40	94	0	134	31	25	3	39	1.74
51041--56999	159	37.5	156	64	13	894	31	19	13	35	1.91
63439--64907	477	3.1	473	85	3	1951	31	18	14	35	1.91
64906--75948	477	23.3	477	88	2	15497	30	19	14	35	1.91
75556--76356	403	2.0	404	89	1	1241	31	17	12	37	1.88
75959--88824	953	13.6	952	87	2	17923	31	19	13	35	1.91
77213--88824	477	24.5	475	87	3	16510	31	19	13	35	1.91
89382--89407	13	2.0	13	100	0	52	38	15	15	30	1.88
89363--89428	33	2.0	34	87	3	98	42	16	13	27	1.86
95695--95740	21	2.2	20	81	11	58	32	19	4	43	1.71
98041--110865	477	27.2	477	88	3	18137	30	19	14	35	1.91
97106--166234	953	71.9	954	81	7	62001	30	19	14	35	1.91
110602--111121	257	2.0	257	87	2	758	30	17	13	37	1.89
110125--111596	734	2.0	731	87	2	2141	31	18	14	36	1.90
116750--116856	42	2.5	42	90	0	178	9	46	2	41	1.50
116750--116868	42	2.8	42	85	2	168	8	45	3	42	1.51
118481--166234	477	100.2	477	89	1	69692	30	18	14	36	1.91
118481--166234	953	50.1	954	90	0	70074	30	18	14	36	1.91
118619--179984	160	386.2	160	63	13	2793	30	18	14	36	1.91
165104--166392	158	8.1	158	67	12	573	30	18	15	35	1.92
165580--166841	635	2.0	635	96	0	2308	30	19	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164704--167903	158	20.1	158	64	13	461	29	18	15	36	1.91
166215--184135	477	37.6	477	89	1	25686	30	18	14	35	1.91
183939--184315	200	1.9	200	89	2	596	29	15	16	37	1.90
183556--184812	676	1.9	669	91	1	1910	30	18	14	36	1.91
184138--195801	477	24.5	477	89	1	16916	30	19	14	35	1.91
197401--197489	42	2.4	34	73	22	81	43	3	44	7	1.49
197410--197519	42	2.6	42	88	5	168	40	3	46	9	1.53
201692--201863	85	2.0	85	98	0	335	25	13	26	35	1.92
203283--203944	158	4.2	156	64	12	326	30	19	14	36	1.91
202598--204376	477	3.7	477	94	0	2982	30	19	14	35	1.92
204227--204704	158	3.0	157	65	13	384	29	18	17	34	1.94
204050--204704	317	2.1	316	90	1	1040	29	18	16	35	1.94
203573--205182	794	2.0	794	90	0	2524	30	19	15	35	1.92
204367--210133	477	12.1	477	91	1	9320	30	18	13	36	1.90
213724--213778	22	2.5	22	100	0	110	61	9	10	18	1.54
214689--214763	20	3.8	20	80	3	80	40	12	13	34	1.81
214686--214763	40	2.0	39	87	2	111	39	12	12	34	1.82
215257--217276	86	23.5	86	89	4	2951	22	17	32	28	1.96
215239--217276	29	71.2	29	88	4	2894	22	17	32	28	1.96
215239--217279	143	14.3	143	91	2	3060	22	17	32	28	1.96
218496--218570	12	6.6	12	82	13	63	1	2	9	86	0.72
218508--218570	1	63.0	1	77	0	63	0	1	9	88	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218496--218570	23	3.3	22	77	15	73	1	2	9	86	0.72
218497--218570	24	2.8	27	84	15	86	1	2	9	86	0.73
218491--218569	19	4.1	19	79	12	81	2	3	8	84	0.82
218508--218571	25	2.8	22	82	13	83	0	1	10	87	0.61

Tables:   1

The End!