Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1977

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4150
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.35


Found at i:3691 original size:33 final size:33

Alignment explanation


    Indices: 3649--3711  Score: 90
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       3639 ATAATCATAG

                                 *           
       3649 TGTATCGATACAAAGCAATTTGTATCGATATAA
          1 TGTATCGATACAAAGCAATTTATATCGATATAA

                       **  *              
       3682 TGTATCGATACTTAGTAATTTATATCGATA
          1 TGTATCGATACAAAGCAATTTATATCGATA

       3712 CATCTAGGTG


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  33   26  1.00

ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38


Consensus pattern (33 bp):   
TGTATCGATACAAAGCAATTTATATCGATATAA
Done.