genome.fa.s1982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1982
Parameters: 2 7 7 80 10 50 1000
Length:  40774

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112--204	40	2.4	39	87	10	136	35	12	19	32	1.90
2481--2525	21	2.1	21	84	8	56	53	4	20	22	1.63
4327--4357	15	2.1	15	93	0	53	48	16	22	12	1.80
6360--6439	20	3.8	20	75	15	79	26	15	15	43	1.85
6425--6463	13	3.0	13	96	0	69	30	17	15	35	1.91
8231--8327	49	2.0	49	100	0	194	32	4	27	35	1.76
9039--9064	13	2.0	13	100	0	52	38	15	15	30	1.88
9119--9155	20	1.9	20	94	5	67	45	13	10	29	1.77
11940--11979	19	2.3	16	87	12	53	17	5	0	77	0.94
13019--13090	33	2.2	33	79	0	81	37	20	4	37	1.72
16942--16966	13	1.9	13	100	0	50	40	0	4	56	1.18
16932--16976	17	2.6	17	82	3	54	40	0	2	57	1.11
17848--17904	15	3.8	15	77	15	64	43	1	0	54	1.10
17803--17921	38	3.2	39	81	9	135	44	0	0	54	1.05
17852--17921	18	4.0	17	75	12	70	42	1	0	55	1.08
17758--17897	20	6.9	20	65	15	65	40	2	0	57	1.16
18260--18320	31	2.0	31	84	12	81	34	1	8	55	1.39
18230--18313	16	5.3	16	73	8	64	32	1	8	58	1.35
18270--18320	16	3.2	16	72	10	52	33	0	7	58	1.27
18449--18481	17	1.9	17	88	11	50	72	0	0	27	0.85
19015--19044	15	2.0	15	93	0	51	56	0	0	43	0.99
19361--19446	20	4.2	20	81	11	111	58	13	11	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22298--22471	20	8.8	20	74	18	123	27	14	15	42	1.86
22356--22385	13	2.3	13	100	0	60	30	16	13	40	1.87
24761--25057	79	3.8	79	84	2	368	28	26	13	31	1.94
24995--25110	51	2.3	51	89	3	180	31	30	9	29	1.89
24962--25298	158	2.1	157	81	4	383	27	28	13	30	1.95
25092--25167	28	2.8	26	84	8	80	26	31	17	25	1.97
25152--25270	51	2.3	51	88	2	186	27	27	13	31	1.94
25120--25400	130	2.2	131	94	0	483	27	27	14	30	1.96
25202--25350	79	1.9	80	88	1	228	26	27	16	29	1.97
25281--25400	52	2.3	51	90	4	188	26	28	15	29	1.96
25120--25424	131	2.3	129	89	5	470	27	27	14	30	1.95
25120--25480	131	2.8	130	86	2	429	26	27	14	31	1.95
31635--32201	62	9.2	61	85	3	724	25	28	18	27	1.98
31635--32190	122	4.5	123	87	3	742	25	28	18	27	1.98
33959--34415	161	2.8	162	89	2	702	42	12	10	33	1.78
38631--38711	35	2.4	33	83	6	99	23	24	12	39	1.89
38632--38949	33	10.1	32	73	8	118	23	29	12	34	1.91
38766--38868	30	3.5	30	79	2	127	26	34	13	25	1.93
38671--38876	59	3.4	59	78	4	178	25	32	13	28	1.93
38856--38946	31	2.8	33	78	8	96	21	29	10	37	1.88
40428--40526	34	2.9	35	81	15	118	17	15	38	29	1.90

Tables:   1

The End!