Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1984
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19726
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Found at i:3140 original size:13 final size:13
Alignment explanation
Indices: 3118--3149 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
3108 TCGATACATG
*
3118 ATACAATGTATCA
1 ATACATTGTATCA
3131 ATACATTGTATCA
1 ATACATTGTATCA
3144 ATACAT
1 ATACAT
3150 GATGAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (13 bp):
ATACATTGTATCA
Found at i:3148 original size:33 final size:33
Alignment explanation
Indices: 3105--3169 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
3095 TCCACTGTTG
*
3105 GTATCGATACATGAT-ACAATGTATCAATACATT
1 GTATCAATACATGATGA-AATGTATCAATACATT
* *
3138 GTATCAATACATGATGAATTGTATCGATACAT
1 GTATCAATACATGATGAAATGTATCAATACAT
3170 AACTTGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (33 bp):
GTATCAATACATGATGAAATGTATCAATACATT
Found at i:5442 original size:475 final size:476
Alignment explanation
Indices: 4425--10821 Score: 8337
Period size: 475 Copynumber: 13.5 Consensus size: 476
4415 TTTATTTAAG
* * * * *
4425 AGAAAACATTTTCTTGCGACACTAAAGCATCAATGTCAGGTATCTTAATGAAAGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * * *
4489 TTAGC-TCCCAATCTCAAAAAGAATGGAGACTCTTATGAGAATCGATGCTTGTCATATTTAACGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * *
4553 ATGAATTTTGATATTAGGGAAAATAGGGCAAAGAAAAGATTTCCACT-CAAAAGAAAATTGTGAA
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * *
4617 GATCGTTTATACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAACATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATT
* * *
4682 ACT---A-----GTTTGTCTCATTTAAGGCACGAACTTCGACTTTACAAAAATTGGTGGCAAAAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * *
4739 AGCCTTTCTTATGAAACCAAAACATCAATATCGTGTATCCTTACGAGAAGACAAAGTTTATGGTG
323 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
*
4804 CCTAATCATGAAAA-AATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACT
** * *
4868 TTTTTTCTATAAAAAACAGTGGAA
453 TTACTTCTATCAAAAACGGTGGAA
* * * * *
4892 AGAAAACATTTTCTTGCGATGCCAAAGCATGAATGTTAGGTATCCTAATGAAGGAAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * * * * * *
4956 TTAGC-TCCCAATCTCAAAAAGAATGGATACTCTTACGAGAATCGATGCTTGTCATAATTAAGCG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * *
5020 ATGAATTTCGATATTAGGGAAAATAGGGGAAAAAAAAGATTTCTATGCAAAAGAAAATCGTGAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
5085 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTA
*
5150 CTAGGATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* *
5215 GCCTTTGTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGCTTATGGTGC
324 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* *
5280 CTAATCATGAAAAGAATGGGGATTAGCATGACAATTCACGTTTGTCTTATTTAAGAGACAAACTT
389 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
5345 T-TTTCTATGAAAAACAGTGGAA
454 TACTTCTATCAAAAACGGTGGAA
* * * * * *
5367 AGAAAACATTTTCTTGCAACACCAAAGCATCTATGTCAGGTATCTTAATAAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
5432 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTCACGAGAATTGATGCTTGTCATATTTATGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * * * *
5497 GAATTTTGATATTATGTAAAACAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCATCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * * *
5562 CGTTTATCCTAATGAGGAGAATGTGATTATAGTGCTTAATCACAAAATGAATGAGGATCTTTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT
* * *
5627 AGAATCCTCGTTTGCCTCCTTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
5692 CTTTCTTACGAATCCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACAAATTTTATGATGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
5757 AATCGTGAAAAGGGA-GGGGATTAGCATGACAATTCATGTTTGCCTTATTTAAGAGACAAACTTT
391 AATCGTGAAAA-GAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
*
5821 ACTTCTATCAATAACGGTGGAA
455 ACTTCTATCAAAAACGGTGGAA
* * * *
5843 AGAAAACCTTTTCTTGCGATTCCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * *
5908 TGCTTCTCAATCTTGAAAAGAGTGGAGACTTTTATGAGAATTGATGATTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * *
5973 GAATTTTGATATTAAGGAAAATAGGGCAAAAAAAAGATTTCAATG-AAAAAAAAATCGTTAGTAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * *
6037 CATTCATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCA-AAAAATGAATGAAGATCATTAC
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAA-GAATGAAGATCATTAC
* * *
6101 TAGAATCCTCGTTTGTCTCATTTGGGGCACGAACTTAGACTTTGCAGAAATTGGTGGCAAGAAAG
260 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAG
* * * * *
6166 CCTTTCCTACGAAACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACGATGTTTATGCTGCC
325 CCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCC
* ** * * *
6231 TAATCGTGAAAAGAAT-GGGACTAGCATGAGTATT-ATTGTTTGTCTTATTTAGGTGATAAACTT
390 TAATCGTGAAAAGAATGGGGATTAGCATGACAATTCA-TGTTTGTCTTATTTAAGAGACAAACTT
* *
6294 TACTTCTATAAAAAACAGTGGGAA
454 TACTTCTATCAAAAACGGT-GGAA
* * * * *
6318 GGAAATC-TTTTCTTGCGATACCATAGCATCAATGTCTTGTATCCTGATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * *
6381 TTAG-TTCCAAATCTCGAAAAGATTGGAGACTCTTA-GAAGAATCT-ATGCTTGTCATAATTAAG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATG-AGAAT-TGATGCTTGTCATATTTAAG
* * * *
6443 GGCTGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGTTTTCAATGCAAAAGAAAAATCGTC
127 GGATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAG-AAAATCGTC
* *
6508 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGGAA-GAAGATC
191 AATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AGAATGAAGATC
* * * * * * *
6572 ATTACTGGAATCCTCGTTTGCCTTATTTAAGCCACGAACTTCGACTTTACAAAAATTAGTGGCAA
255 ATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAA
* * * * *
6637 TAAAGCTTTTCTTACAAAACCAACGCATCAATATCGTGTATCCCTATGAGAAGACAAAGTTTATG
320 GAAAGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATG
* * * * * * *
6702 GTGCCTAATCGTGAAAAGAGTGGGGATTGGCATGACAATTCGTGTTTATCTTATTTAAGAAATAT
385 GTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAA
* *
6767 ACTTTATTTCTATCAAAAACGATGGAA
450 ACTTTACTTCTATCAAAAACGGTGGAA
* * * * * *
6794 AGAAAAC-TTTTGTTGCGATTCCAAAACGTCAATGTCATGTATCCTAATAAAGGGCATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * *
6858 TGCTTCTCAATCTTGAAAAGAGCGGAGACTTTTATGAGAATTGATGATTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
*
6923 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAAT-CAAAA-AAAATCGTTAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * *
6986 CATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT
* ** *
7051 AGAATCCTCGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTGTAGAAATTGGTGGCAAGAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * *
7116 CTTTCTTATGAAACCAAAGCATCGATATCGTGTATCCTTATGAGAAGACAACGTTTATGGTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* *
7181 AATCGTGAAAAGAGTGGGGATTAGCCTGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
* **
7246 CTTCTATCAAAAATGGCAGAA
456 CTTCTATCAAAAACGGTGGAA
* *
7267 AGAAAACCTTTTCTTGCGATACCAAAGCATTAATGTCATGTATCCT-AT--------T-TGC--T
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * * * * *
7320 T--AT--CAATCTTGAAAAGGGTGGGGACTTTTTTGAGAATTGATGCTTGTCGTATTTAAGGCAC
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * * *
7381 GAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAG-TTTCAAGGGAAAAAGAAAATCGTTAATA
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA-TGCAAAAGAAAATCGTCAATA
* * *
7445 TCGTTTATCCTAAAGAGGAGAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTAC
195 TCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTAC
* *
7510 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACAAAAGTTGGTGGCAAGAAAG
260 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAG
* * *
7575 CCTTTCTTACGAAACCAAAGCATCAATATCGTGAATCCTTATGAGAAGCCAAAGTTTGTGGTGCC
325 CCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCC
* * *
7640 TAGTCGTGAAAAGAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
390 TAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
*
7705 ACTTCTATCAAAAATGGTGGAA
455 ACTTCTATCAAAAACGGTGGAA
* **
7727 AGAAAA-ACTTTTCTTGCGATTCCAAA-CTATCAATGTCATGTATCCTAATGAATTGAATGTGCT
1 AGAAAACA-TTTTCTTGCGATACCAAAGC-ATCAATGTCATGTATCCTAATGAAGGGAATGTGCT
** * * *
7790 TTTGCTTTTCAATCTTGGAAAGAGCGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
64 TTTGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* *
7855 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTTAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * * ** *
7920 ATCATTTATCCTATTAAGGAGAATGTGTTTATAGTGCCTTTTCACAAAATG-ATGAAGATCATTA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTA
* * *
7984 CTAGAATCCTCGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGTAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* * *
8049 GCCTTTCTTACGAAACCAAAGCATCAATATCCTGTATTCTTATGAGAAGACAATGTTTATGGTGC
324 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* * * * * * * *
8114 CTAATTGTGAAAAGAATGGGGACTAGCGTGACTATTCTTGTTTGTCCTATCTAACAGACAAACTT
389 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
*
8179 TACTTCAATCAAAAACGGTGGAA
454 TACTTCTATCAAAAACGGTGGAA
* * * *
8202 AGAAAACTTTTTCTTGCAACACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * * * * *
8266 TTAGC-TCCCAATCTCGAAAAGAATGGAGACTCTTACGAGAATCGATGCTTATCGTAATTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * *
8330 ATGAATTTTGAAATTAATGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATGAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* *
8395 ATCGTTGATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATTATTA
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTA
* * *
8460 CTAGAATCCTCGTTTGTCTCATTTAAGGCATGAACTTAGACTTTAC-AAAATTGGTGACAAGAAA
259 CTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAA
* * * *
8524 GCCTTTCTTATGAAAGCAAAGCATCAATATCATCTATCCTTATGAGAAGACAAAGTTTATGGTGC
324 GCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGC
* * *
8589 CTAATCATGAAAAGAATGGGGATTAGCATGATAATTCATGTTTGTCTTTTTTAAGAGACAAACTT
389 CTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
*
8654 TACTTCTATCAAAAACGGTGGGA
454 TACTTCTATCAAAAACGGTGGAA
* * * * *
8677 AGAAAAGATTTTCTTGTGACACCAAAGCATCAGTGTCCTGTATCCTAATGAAGGGAATGTG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* ** * * ** * * * * *
8741 TTAG-TTCCTAATCTTAAAAAGAATGGAGACTCTTACAAAAATCGATGCCTGTCACAATTAAGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* *
8805 ATGAATTTCGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAAT
* * *
8870 ATCGTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATA-AAAGAAGATCAAT
194 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AGAATGAAGATCATT
* *
8934 ACTCGAATCCTCGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
*
8999 AGCTTTTCTTACG-AACACAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
323 AGCCTTTCTTACGAAAC-CAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGT
* * *
9063 GCCTAATCATGAAAAGAATGGGGACTAGCATGACAATTCGTGTTTGTCTTATTTACA-AGACAAA
387 GCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAA
*
9127 CTTT-CTTCTATCAAAAATC-GTGGAC
451 CTTTACTTCTATCAAAAA-CGGTGGAA
* * * * * * * *
9152 ACAAAACATTTTCTTGGGACACGAAAGCATCAGTGTCCTTTATCCTAATGAAGGGAATATG-TTC
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTT-
* * * ** * * * *
9216 TTAG-TTCCCAATCACGAAAGGAATGGAGACGCTTATGAGAATCGATGCTTGTCGTAATTAGGGG
65 TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGG
* * * * * * *
9280 ATGAATATTGAAATTAAGGAAAACAAGGCAAAGAAAAGATTTGC-ATGCAAAAGAAAATCATGAC
129 ATGAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCGTCAA
* * *
9344 TATCGTTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAAAGAATGAGGATCATT
193 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATT
* * **
9409 ACTAGAATCCTCGTTTGTCTCATTTGAGGCATGAACATAGACTTTGGAAAAATTGGTGGCAAGAA
258 ACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA
* * * * * * *
9474 GGCATTTCTTACGAACCCAAAGCATCAATATCCTATATCCTTATGATAAGACAAAGTTTATGGTA
323 AGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTG
* * *
9539 CCTAATCATCAAAAGAATGGGGACTAGCATGACAATTCATGTTTGTCTTATTTACA-AGACAAAT
388 CCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTA-AGAGACAAA-
* * * *
9603 TTTTTCTTCTATCAAAAATGGTAGAA
451 CTTTACTTCTATCAAAAACGGTGGAA
* *
9629 AGAAAACATTTTCTTGCGATACCAAAGCTTTAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* *
9694 TCCTTCCCAATCTCGAAAAGAGTTGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
9759 GAATTTTGATATTAAGGAAAATAGTGCAAAGAAAAGATTTCAATGGAAAAGAAAATCGTCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
9824 TGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCAC-AAAAGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT
* * * * * *
9888 AGAATCCTCCTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAATTTGTTGGCAATAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * *
9953 CTTTCTTATGAACCCAAAGCATCAATATCATGTATCCCTATGAGAAGACAAAGTTTATGGTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* * * * * *
10018 AATCATGAAAACAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
10083 CTTCTATCAAAAACGGTGGAA
456 CTTCTATCAAAAACGGTGGAA
* * * * *
10104 AGAAAAC-TTTTCTTGCAATTCCAAAGCGTCAATGTCATGTATCCTAATAAAGGGTATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * *
10168 TGCTTCTCAGTCTTGAAAAGTGCGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* * *
10233 GAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCAATG-GAAAGAAAATCGTCAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* *
10297 TGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCAC-AAAAGAATGAAGATCATTACT
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT
* * * * * *
10361 AGAATCCTCG-TTGTCTCATTTGAGGTACAAACTTAAACTTTACAAAATTTGTTGGCAATAAAGC
261 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * *
10425 CTTTCTTATGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACAAAGTTTATGGTGCCT
326 CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
* * * *
10490 AATCGTGAAAACAGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAGAGACATACTTTA
391 AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
10555 CTTCTATCAAAAACGGTGGAA
456 CTTCTATCAAAAACGGTGGAA
* * * * *
10576 AGAAAAC-TTTTCTTGCAATTCCAAAGCGTCAATGTCATGTATCCTAATAAAGGGTATGTGCTTT
1 AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
* * * * * ** *
10640 TACTTCTCAGTCTTGAAAAGTGCAGAGACTTTTATGAGAATTGATGATTGTCATATTTAAGGGAT
66 TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
* *
10705 GAAATTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATG-AAAA-AAAATCGTTAATAT
131 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
* * * *
10768 CATTTATCCTACTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
196 CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGA
10822 TGAAAGCTTA
Statistics
Matches: 5260, Mismatches: 592, Indels: 151
0.88 0.10 0.03
Matches are distributed among these distances:
457 6 0.00
458 85 0.02
459 5 0.00
460 315 0.06
461 2 0.00
462 2 0.00
464 3 0.00
465 1 0.00
466 2 0.00
467 235 0.04
469 1 0.00
470 4 0.00
471 51 0.01
472 386 0.07
473 359 0.07
474 392 0.07
475 2033 0.39
476 1093 0.21
477 283 0.05
478 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
AGAAAACATTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTT
TGCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGAT
GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCGTCAATAT
CGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACT
AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
CTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCT
AATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA
CTTCTATCAAAAACGGTGGAA
Found at i:10142 original size:158 final size:157
Alignment explanation
Indices: 9966--10623 Score: 343
Period size: 158 Copynumber: 4.2 Consensus size: 157
9956 TCTTATGAAC
*
9966 CCAAAGCATCAATATCATGTATCCCT-ATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAC
1 CCAAAGCGTCAATATCATGTATCCCTAATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAC
10030 AGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTACTTCTATCAAAA
66 AGTGGGGATT-GCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTACTT-TATCAAAA
*
10095 ACGGTGGAAAGAAAACTTTTC-TTGCAATT
129 ACGGTGGAAAGAAAACTTTTCATTGCAA-A
* *** * * * * * *
10124 CCAAAGCGTCAATGTCATGTAT-CCTAAT-A-AAGGGTATGTGCTTTTGCT-TCTCAGTCTTG-A
1 CCAAAGCGTCAATATCATGTATCCCTAATGAGAAGACAAAGT--TTATGGTGCCT-AATCATGAA
** * * * * ** * *
10184 AA-AGTGCGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGGGATGA-ATTTTGA-TATT
63 AACAGTG-GG-GA-TTGCATGACAATTCATGTTTGTCTTATTTAAAAGA-CATACTTT-ACT-TT
*** * * ** * *
10246 AAGGAAAACAGTGCAAAGAAAAGATTTCAATGGAAA
122 ATCAAAAACGGTGGAAAGAAAACTTTTCATTGCAAA
** * ** * * ** ** *
10282 GAAAATCGTCAATATTGTTTAT-CCTAATGAGGAGA-ATGTGTTTATAATGCCTAATCA-CAAAA
1 CCAAAGCGTCAATATCATGTATCCCTAATGAGAAGACA-AAGTTTATGGTGCCTAATCATGAAAA
* * ** * * * * * * * *
10344 GAATGAAGA-T-CATTACTAGAATCCTCG-TTGTCTCATTT-GAGGTACAAACTTAAACTTTA-C
65 CAGTGGGGATTGCATGAC-A-ATTCAT-GTTTGTCTTATTTAAAAG-ACATACTT-TACTTTATC
** * * * * * *
10404 AAAATTTGTTGGCAATAAAGCCTTTCTTATG-AAA
125 AAAA-ACGGTGGAAAGAAAACTTTTCAT-TGCAAA
* *
10438 CCAAAGCATCAATATCATGTATCCCT-ATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAC
1 CCAAAGCGTCAATATCATGTATCCCTAATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAC
*
10502 AGTGGGGATTGGCATGACAATTCATGTTTGTCTTATTTAAGAGACATACTTTACTTCTATCAAAA
66 AGTGGGGATT-GCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTACTT-TATCAAAA
*
10567 ACGGTGGAAAGAAAACTTTTC-TTGCAATT
129 ACGGTGGAAAGAAAACTTTTCATTGCAA-A
*
10596 CCAAAGCGTCAATGTCATGTAT-CCTAAT
1 CCAAAGCGTCAATATCATGTATCCCTAAT
10624 AAAGGGTATG
Statistics
Matches: 345, Mismatches: 116, Indels: 78
0.64 0.22 0.14
Matches are distributed among these distances:
154 3 0.01
155 8 0.02
156 84 0.24
157 41 0.12
158 177 0.51
159 22 0.06
160 10 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (157 bp):
CCAAAGCGTCAATATCATGTATCCCTAATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAC
AGTGGGGATTGCATGACAATTCATGTTTGTCTTATTTAAAAGACATACTTTACTTTATCAAAAAC
GGTGGAAAGAAAACTTTTCATTGCAAA
Found at i:13998 original size:476 final size:475
Alignment explanation
Indices: 13093--14024 Score: 1239
Period size: 476 Copynumber: 2.0 Consensus size: 475
13083 AATAGGGCAA
* * * * *
13093 AGAAGACAAAGTTTATGGTGCCTAATCGTTAAATGAATAGGGACGAGCATGGCAATTCATGTTTG
1 AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGCATGACAATTCATGTTTG
* * * ** * *
13158 TCTTATTTAAGAGACAAACTTTTCTTCTATCAAAAATGGTGGAACGTAAACATTTTCTTGCGACA
66 TCTTATTGAAGAGACAAACTTTACTGCTATCAAAAATAATGGAAAGAAAACATTTTCTTGCGACA
* ** * * *
13223 CCAAAGCATCAACTTCATGTATCCTAATGTAGGGAATGTGCTTTTGCTTCCCAATCTCGAAAAGA
131 CCAAAGCATCAACTTCAAGTATCCTAATAAAGGGAATGTGCTATAGCTTCCCAATCTCAAAAAGA
* * * * *** * *
13288 GTGGAGACTTTTATGAGAATTGGTGCTTGTCATATTTAAGGGATGAATTTTGATATTAAGAAAAA
196 ATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAA
* * * *
13353 TAAGGCAACAGAAAGATTTCTATGCAAAAGAAAATCATGAATATCATTCACCATAGTAAGGAGAA
261 TAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATGAATATCATTCACCAAAG-AAGGAGAA
* * *
13418 TGTGTTTGTAGTGCCTAATCACAGAAAGAATGAAAATCATTACTAGAATCCTCGTTTCTCTCACT
325 TGTGTTTATAATGCCTAATCACAGAAAGAATGAAAATCATTACTAGAATCCTCATTTCTCTCACT
* *
13483 TGAGGCACGAACTTAGACTTTGCAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAAAGCA
390 TGAGGAACGAACTTAGACTTTACAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAAAGCA
13548 TCAATATCGTGTATCCTTCTG
455 TCAATATCGTGTATCCTTCTG
**
13569 AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATGACAATTCATGTTTG
1 AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGCATGACAATTCATGTTTG
*
13634 TCTTATTGAAGAGACAAACTTTACTGCTA-CCAAAATCAATGGAAAGAAAACATTTTCTTGCGAC
66 TCTTATTGAAGAGACAAACTTTACTGCTATCAAAAAT-AATGGAAAGAAAACATTTTCTTGCGAC
* *
13698 ACCAAAGCATCAA-TGTCAAGTATCCTAATAAAGGGAAAATGTTC-ATAGC-TCCCATTCTCAAA
130 ACCAAAGCATCAACT-TCAAGTATCCTAATAAAGGG--AATGTGCTATAGCTTCCCAATCTCAAA
*
13760 AAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTATGA
192 AAGAATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGA
* * * *
13825 AAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCTTGAATATCGTTTATCCTAAAG-AG
257 AAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATGAATATCATTCA-CC-AAAGAAG
* * *
13889 GAGAATGTGTTTATAATGCCTAATCATA-AAAGGAATGAAGATCATTACTAGAATCCTCATTTGT
320 GAGAATGTGTTTATAATGCCTAATCACAGAAA-GAATGAAAATCATTACTAGAATCCTCATTTCT
* * * * * *
13953 CTCATTTGAGGAACGAATTTGGACTTTACAAAAAGT-GGTGACAAGAAAGCCTTTCTTTCGAAAC
384 CTCACTTGAGGAACGAACTTAGACTTTACAAAAA-TCGGGGACAAGAAAGCCTTTCTTACAAAAC
14017 CAAAGCAT
448 CAAAGCAT
14025 GGATATTGTG
Statistics
Matches: 393, Mismatches: 55, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
475 10 0.03
476 368 0.94
477 6 0.02
478 9 0.02
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (475 bp):
AGAAAACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGACGAGCATGACAATTCATGTTTG
TCTTATTGAAGAGACAAACTTTACTGCTATCAAAAATAATGGAAAGAAAACATTTTCTTGCGACA
CCAAAGCATCAACTTCAAGTATCCTAATAAAGGGAATGTGCTATAGCTTCCCAATCTCAAAAAGA
ATGGAGACTCTTACGAAAATCAATGCTTGCCATAATTAAGGGATGAATTTTGATATTAAGAAAAA
TAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATGAATATCATTCACCAAAGAAGGAGAAT
GTGTTTATAATGCCTAATCACAGAAAGAATGAAAATCATTACTAGAATCCTCATTTCTCTCACTT
GAGGAACGAACTTAGACTTTACAAAAATCGGGGACAAGAAAGCCTTTCTTACAAAACCAAAGCAT
CAATATCGTGTATCCTTCTG
Found at i:15760 original size:475 final size:475
Alignment explanation
Indices: 14052--17047 Score: 3563
Period size: 473 Copynumber: 6.4 Consensus size: 475
14042 TCGAAACTAA
* * * *
14052 AGCATGAGAATTCATGTTTGTCTTATTTAAGAGAAAAACTTTACTTTTATCAAAAACAGTGGAAA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGTGGAAA
** * * * * *
14117 GAAAACCCTTTCTTGCGAAACCAAAGCATCAACGTCATGCATCCTAATAAAGGGAACGTGCTTC-
66 GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTCT
* * ** * * *
14181 T-GCTTCTCAATGTTTAAAAGAGTGGAGACTTTTACGAGAATTGATGCTTGTCATATTTAAGGGA
130 TAGC-TCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTCATAATTAAGGGA
* *
14245 TGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAGGATTTTAATGGAAAAGAAAATCATCAATA
194 TGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTT-ATGCAAAAGAAAATCATCAATA
* * * * * *
14310 T-GTTTATCCTAAAGAGCAGAACGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTCC
258 TCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
*** * *
14373 TAGAATCCTCGTTTGTCTCATCCAAGGCACGGACATAGACTTTACAAAAATTGGTGGCAAGAAAG
323 TAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAG
14438 CCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAC--AGTTTATGGTGCC
388 CCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACAAAGTTTATGGTGCC
14501 TAAT-ATTGAAAAGAATGGGGATT
453 TAATCA-TGAAAAGAATGGGGATT
* * * *
14524 AGCATGACAATTCAAG-TTGCCTTATTAAAGAGACAAACTTTACCTTCTATCAAAAACGGTGGAA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTA-CTTCTATCAAAAACTGTGGAA
* ** * *
14588 AGAAAAACAATTTCTTGTAACATCAAAGCATCAATGTCATGTATCCTAATTAAGGGAATGTGCTT
65 AG-AAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TT
* * * *
14653 -TT-GCTTTCCCAATCTC-AAAAGAATGGACACTTTTATGAGAATTGATGCTTGTCATATTTAAG
128 CTTAGC--TCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTCATAATTAAG
* * * * * *
14715 CGATGAA-CTTGATATTTAGGAAAACAGGGCAAAGAAAAGATTTCAATGGAAAA-ATAAATCGTC
191 GGATGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTT-TATGCAAAAGA-AAATCATC
* *
14778 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCAC-AAATGAATGAAGATCA
254 AATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
14842 TTACTAGAATCCTTGTGTGTCTCATCTGAGGCACGAACATAGACTTTTACAAAAATTGGTGGCAA
319 TTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTGGTGGCAA
* * * * * * *
14907 GAAA-ACTTTCTTACGAAACCAGATCATCATTGTCGTGTATCCTTATGAGAAGACAAAGTTTATG
383 GAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACAAAGTTTATG
*
14971 GTGCCTAATCATGAAAAGAATGAGG---
448 GTGCCTAATCATGAAAAGAATGGGGATT
* * * * * * * *
14996 -GCAAGATAATACATGTTTTTTTTTATTTAAGAGACAAACTTTTCTTATATCAAAAA-TGGCGGA
1 AGCATGACAATTCATG-TTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACT-GTGGA
* * *
15059 AAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATATGCTT
64 AAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TT
* * * *
15124 -TT-GCTTCCCAATCTCGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAAGG
128 CTTAGC-TCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTCATAATTAAGG
* * *
15187 GATGAATTTTGATATTAAGTAAAACAGGGCAAAGAAAAAATTTCCACTG-AAAA-AAAATCATCA
192 GATGAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTT-TA-TGCAAAAGAAAATCATCA
* * * * * * * *
15250 ATATCGTTTATCCTAATGAGGAGAATATGTTTATAGTACCTAATAACAAAACGAATGGAGGTCAT
255 ATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * * * *
15315 TACTAGAATCTTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAGATACTGGTGACAAGA
320 TACTAGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGA
*
15380 AAGCCTTTCTTACGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAAACAAAGTTTATGGT
385 AAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACAAAGTTTATGGT
*
15445 GCCTAATCATGAAAAGAATAGGGATT
450 GCCTAATCATGAAAAGAATGGGGATT
* * * * *
15471 AGCATGACAATTTATGTTTGTCTTTTTTAAAAGACAAACTTTGCTTCTATCAAAAACTGTGTAAA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGTGGAAA
* *
15536 GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAAAGAAGGGAATGTGTTCTT
66 GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* *
15601 AGCTCCCAATCTCG-AAAGAATAGAGACCTTTT-CGAAAATCGATGCTTGTCATAATTAAGGGAT
131 AGCTCCCAATCTCGAAAAGAATGGAGA-CTTTTACGAGAATCGATGCTTGTCATAATTAAGGGAT
* * *
15664 GAATTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCTTGAATAT
195 GAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTT-TATGCAAAAGAAAATCATCAATAT
* * * * * * *
15729 CATTCATCATAGTTAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAAAGAAAATCACTACT
259 CATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
15794 AGAATCCACGTTTGTCTCACTTGAGGCACGAACTTAGACTTTACAAAAGTTGGTGACAAAAAAGC
324 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * * ** *
15859 CTTTCTTACAAAACCAAAGCGTCAATATCATGTATCCTTACGAGTAGGCGAAGTTTATGGTGCCT
389 CTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACAAAGTTTATGGTGCCT
15924 AATCATGAAAAGAATGGGGATT
454 AATCATGAAAAGAATGGGGATT
* * *
15946 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTCACTTCTATCAAAAGCGGTGGAAA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGTGGAAA
* * *
16011 GAAAACATTTTCTTGCGACACCACAGCATCAATGTCATGTATACTAACGAAGGGAATGTGTTCTT
66 GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* * * *
16076 AGCTCCCAATCTCGAAAAAAATGGAGACTCTTAC--G-ATCAATGCTTGTCATAATTAAAGGATG
131 AGCTCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTCATAATTAAGGGATG
** * * * * *
16138 AATTTTGATACAAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCAGAAGAAAATCTTGAATATC
196 AATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTT-ATGCAAAAGAAAATCATCAATATC
* * * * *
16203 GTTTAT-ACTAATGAGGAGAATGTTTTTATACTGCCTAATCACAAAAAGATTGAAGATCATTACT
260 ATTTATCA-TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * *
16267 AGAATCCTCATTTGTCTCATTTGAGGAACGAACTTAGACTTTTCAAAATTTGGTGGCAAGAAAGC
324 AGAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
* * * * *
16332 CTTTCTTTCAAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGACAAAGTTTATGGTGCCT
389 CTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACAAAGTTTATGGTGCCT
*
16397 AATCACGAAAAGAATGGGGATT
454 AATCATGAAAAGAATGGGGATT
* *
16419 AGCATGGCAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACCTCTATCAAAAA-TGGTGGAA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACT-GTGGAA
* * * * *
16483 AGAAAACGTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTAT
65 AGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCT
* * * * *
16548 TAGCTCCCAACCTCGAAAAGAATGGAGACTCTTAAGAAAATCGATGCTTGTCATAATTAAAGGAT
130 TAGCTCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTCATAATTAAGGGAT
** * *
16613 GAATTTTGATACAAAGGAAAATAGGGCAAAG-AAA-A---TA-G-----G-------GC-A-A--
195 GAATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTTATGCAAAAGAAAATCATCAATATC
** * * *
16656 A-GGA--A-AAT-AGGAGAATTTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTA
260 ATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
*
16716 GAATCCTCGTTTGTCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCC
325 GAATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCC
* * * * *
16781 TTTCTTAAGAAATCAAGGCATCAATATCGTGTATCCTTATGAGAAGAA-AAAGTTTATAGTGCCT
390 TTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACAAAGTTTATGGTGCCT
* *
16845 AATCTTGAAAAGAATGGGAATT
454 AATCATGAAAAGAATGGGGATT
* * * * * *
16867 AGCATTACAATTCATGTTTTTCTTATTTATGAGACAAACTTTGCTTCTATCCAAAACTGTGGAGA
1 AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGTGGAAA
* *
16932 GAAAACATTTTCTTGCGAAACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
66 GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* *
16997 AGCTCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATCGAAGCTTGTC
131 AGCTCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTC
17048 GAAAAGAAAA
Statistics
Matches: 2212, Mismatches: 273, Indels: 102
0.86 0.11 0.04
Matches are distributed among these distances:
448 340 0.15
449 5 0.00
451 1 0.00
452 1 0.00
455 1 0.00
456 1 0.00
464 1 0.00
469 1 0.00
470 11 0.00
471 215 0.10
472 275 0.12
473 683 0.31
474 115 0.05
475 480 0.22
476 82 0.04
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29
Consensus pattern (475 bp):
AGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACTGTGGAAA
GAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
AGCTCCCAATCTCGAAAAGAATGGAGACTTTTACGAGAATCGATGCTTGTCATAATTAAGGGATG
AATTTTGATATTAAGGAAAACAGGGCAAAGAAAAGATTTTATGCAAAAGAAAATCATCAATATCA
TTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
AATCCTCGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCT
TTCTTACGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACAAAGTTTATGGTGCCTAA
TCATGAAAAGAATGGGGATT
Found at i:16661 original size:15 final size:15
Alignment explanation
Indices: 16624--16666 Score: 79
Period size: 14 Copynumber: 2.9 Consensus size: 15
16614 AATTTTGATA
16624 CAAAGGAAAATAGGG
1 CAAAGGAAAATAGGG
16639 CAAA-GAAAATAGGG
1 CAAAGGAAAATAGGG
16653 CAAAGGAAAATAGG
1 CAAAGGAAAATAGG
16667 AGAATTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.56, C:0.07, G:0.30, T:0.07
Consensus pattern (15 bp):
CAAAGGAAAATAGGG
Found at i:18861 original size:474 final size:474
Alignment explanation
Indices: 17997--18861 Score: 1354
Period size: 474 Copynumber: 1.8 Consensus size: 474
17987 CATTTATCCT
17997 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCTCG
1 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCTCG
* * * *
18062 TTTGTCTCATTTGAGGCACGGACTTAAACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAG
66 TTTGTCTCATCTAAGGCACGGAATTAAACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTAAG
* * * * *
18127 AAATCAAAGCATCAATATCGTGTATCATTATGAGAGGATAAAGTTTATGGTGACTAATCTTGAAA
131 AAATCAAAGCATCAATATCATGTATCAGTATGAGAAGACAAAGTTTATGGTGACTAATCTTCAAA
*** * *
18192 AGAATGGGGATTAGCATTCCAATTCATTTTTGTCCTATTTAAGAGACAAACTTTACTTCTATCAA
196 AGAATGGGGATTAGCAAGACAATTCATGTGTGTCCTATTTAAGAGACAAACTTTACTTCTATCAA
** * *
18257 AAATGGTGGGGAGAAAACATTTTCTTGTGACACCAAAGCATCAATGTCATGTATTCGAATGAAAC
261 AAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCGAATGAAAC
* * * *
18322 GAACATGCTTTCGCTTCTCAATGTAGAAAAGAGTGGGGACTTTTATGAGAATTGATGCTTGTCAT
326 GAACATGCTTTCGCTTCACAATCTAGAAAAGAGTGGGGACTTTAACGAGAATTGATGCTTGTCAT
18387 AATTAAGGGATGAATTTTGAAATTAAGGAAAATAGGGTAAAAAAAGTTTTCATGCAAAAGAAAAT
391 AATTAAGGGATGAATTTTGAAATTAAGGAAAATAGGGTAAAAAAAGTTTTCATGCAAAAGAAAAT
18452 CATAAATATCGTTCATCAC
456 CATAAATATCGTTCATCAC
*
18471 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCG
1 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCTCG
* *
18536 TTTGTCTCATCTAAGGCAC-GAATATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTAC
66 TTTGTCTCATCTAAGGCACGGAAT-TAAACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTAA
* *
18600 GAAATCAAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAA
130 GAAATCAAAGCATCAATATCATGTATCAGTATGAGAAGACAAAGTTTATGGTGACTAATCTTCAA
* * * *
18665 AAGAATGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTTTGTCA
195 AAGAATGGGGATTAGCAAGACAATTCATGTGTGTCCTATTTAAGAGACAAACTTTACTTCTATCA
* * *
18730 AAAATGGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
260 AAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCGAATGAAA
* ** * * *
18795 GGAATGTGCTTTTGCTTCACAATCTCGAAAAGAGTGGTGACTTTAACGAGAATTGATGCTTGTCA
325 CGAACATGCTTTCGCTTCACAATCTAGAAAAGAGTGGGGACTTTAACGAGAATTGATGCTTGTCA
18860 TA
390 TA
18862 TTTCAGTGGA
Statistics
Matches: 350, Mismatches: 40, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
473 3 0.01
474 347 0.99
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (474 bp):
AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCTCG
TTTGTCTCATCTAAGGCACGGAATTAAACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTAAG
AAATCAAAGCATCAATATCATGTATCAGTATGAGAAGACAAAGTTTATGGTGACTAATCTTCAAA
AGAATGGGGATTAGCAAGACAATTCATGTGTGTCCTATTTAAGAGACAAACTTTACTTCTATCAA
AAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCGAATGAAAC
GAACATGCTTTCGCTTCACAATCTAGAAAAGAGTGGGGACTTTAACGAGAATTGATGCTTGTCAT
AATTAAGGGATGAATTTTGAAATTAAGGAAAATAGGGTAAAAAAAGTTTTCATGCAAAAGAAAAT
CATAAATATCGTTCATCAC
Found at i:19014 original size:903 final size:903
Alignment explanation
Indices: 16664--19714 Score: 4424
Period size: 903 Copynumber: 3.4 Consensus size: 903
16654 AAAGGAAAAT
* * *
16664 AGGAGAATTTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCTCGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTG
*** * * * *
16729 TCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAGAAAT
66 TCTCATCCAAGGCACGAACATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAAT
* * * * * *
16794 CAAGGCATCAATATCGTGTATCCTTATGAGAAGAAAAAGTTTATAGTGCCTAATCTTGAAAAGAA
131 CAAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAA
* ** * * * * * *
16859 TGGGAATTAGCATTACAATTCATGTTTTTCTTATTTATGAGACAAACTTTGCTTCTATCCAAAAC
196 TGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTCTGT-CAAAAA
* * * *
16924 T-GTGGAGAGAAAACATTTTCTTGCGAAACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAA
260 TGGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * * * *
16988 TGTG-TTCTTAGC-TCCCAATCTCGAAAAGAATGGAGACTTTTATGAGAATCGAAGCTTGTCGAA
325 TGTGCTT-TT-GCTTCACAATCTCGAAAAGAGTGGAGACTTTAACGAGAATTGATGCTTGTC---
* * * * * * *
17051 AAGAAAATATTTTCA-TGCAAAAGAAAATCATGAATATCGTTCATCATAATGAGGAGAACGTGTT
385 ------ATA-TTTCAGTGGAAAAGCAAATCATCAACATCGTTTATCCTAATGAGGAGAATGTGTT
* * * * * *
17115 TATAATGCGTAATCACAAAATGAATGAATATTATTACTATAATCCTCGTTTGTCTCATTTAAGGC
443 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGC
* * * * *
17180 GCGAACTTAGACTTTACAAAAATTAGG-GACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
508 ACGGACTTAGACTTTACAAAAATT-GGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAAT
* * **
17244 ATCATGTATCCTTATGAGAAGACAGAGTTTATGGTGCCTAATGATGAAAAGAATGGGGATTAGCA
572 ATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCA
** * * * * * ** *
17309 AGACAATTTATGTTTGTCTTTTTTAAGAGACAAAATTTATTTCTATAAAAAACGCAGGAAAGAAA
637 TTACAATTCATGTTTGTCCTTTTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAGAGAAA
* * *
17374 ACCTTTTCTTACGACACCAAAGCATTAATGTCTTGTATCCGAATGAAGGGAACGTGCTTTCGCTT
702 ACATTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCGAATGAAGGGAACGTGCTTTCGCTT
* * * *
17439 CCCAATCTTGAAAAGAGTGGAGACTTTTTTGAGAATTGATGCTTGTCATATTTAAGGGATGAATT
767 CTCAATGTTGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAATT
* * * * * * * * * * *
17504 TTGATATTAAGGAAAACAAGGCAAAGAAAAGATTTCAACGGAAAAGAAATTCGTCAATATCATTT
832 TTGAAATTAAGGAAAATAGGGCAAA-AAAAGTTTTC-ATGCAAAAGAAAATCATAAATATCGTTC
**
17569 ATCGTAATG
895 ATCACAATG
* * * *
17578 AGGAGAATGTGTTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTAGAATCCGCGCTT
1 AGGAGAATGTG-TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTT
* *
17643 GTCTCATCCAAGGCACGAACATAGACTTTACAAAAAGTGGTAGCAAAAAAGCCTTTCTTACGAAA
65 GTCTCATCCAAGGCACGAACATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAA
*
17708 -CAAAAGCATCAATATCATGGATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAG
130 TC-AAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAG
* *
17772 AATGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGAGAAACTTTCCTTCTGTTAAAT
194 AATGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTCTGTCAAA-
* * * *
17837 AAGGGTGGAAAG---A-A----TTTGTGACATCAAAGCATCAATGTCATGTATCCTAATCAAGGG
258 AATGGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
* *
17894 AATGTGCTTTTGCTTCGCAATCTCGAAAAAAGTGGAGACTTTAACGAGAATTGATGCTTGTCATA
323 AATGTGCTTTTGCTTCACAATCTCGAAAAGAGTGGAGACTTTAACGAGAATTGATGCTTGTCATA
*
17959 TTTCAGTGGAAAAGCAAATCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
388 TTTCAGTGGAAAAGCAAATCATCAACATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* *
18024 AATCACAAAATAAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGGACTTAA
453 AATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGGACTTAG
*
18089 ACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCGTGTATCA
518 ACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCGTGTATCC
* * * *
18154 TTATGAGAGGATAAAGTTTATGGTGACTAATCTTGAAAAGAATGGGGATTAGCATTCCAATTCAT
583 TTATGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTACAATTCAT
* * * *
18219 TTTTGTCCTATTTAAGAGACAAACTTTACTTCTATCAAAAATGGTGGGGAGAAAACATTTTCTTG
648 GTTTGTCCTTTTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAGAGAAAACATTTTCTTG
* * * ** * *
18284 TGACACCAAAGCATCAATGTCATGTATTCGAATGAAACGAACATGCTTTCGCTTCTCAATGTAGA
713 CGACACCAAAGCATTAATGTCATGTATCCGAATGAAGGGAACGTGCTTTCGCTTCTCAATGTTGA
*
18349 AAAGAGTGGGGACTTTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAATTTTGAAATTAAG
778 AAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAATTTTGAAATTAAG
*
18414 GAAAATAGGGTAAAAAAAGTTTTCATGCAAAAGAAAATCATAAATATCGTTCATCACAATG
843 GAAAATAGGGCAAAAAAAGTTTTCATGCAAAAGAAAATCATAAATATCGTTCATCACAATG
18475 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTG
* *
18540 TCTCATCTAAGGCACGAATATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAAT
66 TCTCATCCAAGGCACGAACATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAAT
18605 CAAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAA
131 CAAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAA
*
18670 TGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTTTGTCAAAAAT
196 TGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTCTGTCAAAAAT
18735 GGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
261 GGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
*
18800 GTGCTTTTGCTTCACAATCTCGAAAAGAGTGGTGACTTTAACGAGAATTGATGCTTGTCATATTT
326 GTGCTTTTGCTTCACAATCTCGAAAAGAGTGGAGACTTTAACGAGAATTGATGCTTGTCATATTT
* *
18865 CAGTGGAAAAGCAAATCATCAACATCGTTTATCCTAATGGGGAGAATGTGTTTATAGTGCCAAAT
391 CAGTGGAAAAGCAAATCATCAACATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* *
18930 CGCAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGGACTTAGACT
456 CACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGGACTTAGACT
*
18995 TTACAAAAACTGGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCGTGTATCCTTA
521 TTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCGTGTATCCTTA
19060 TGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTACAATTCATGTT
586 TGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTACAATTCATGTT
* *
19125 TGTACTTTTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGAGAGAAAACATTTTCTTGCGA
651 TGTCCTTTTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAGAGAAAACATTTTCTTGCGA
**
19190 CACCAAAGCATTAATGTCATGTATCCGAATGAAGGGAACGCACTTTCGCTTCTCAATGTTGAAAA
716 CACCAAAGCATTAATGTCATGTATCCGAATGAAGGGAACGTGCTTTCGCTTCTCAATGTTGAAAA
* *
19255 GAGTGGAGACTTTTATGAGAATTGATGCTTGTCGTAATTAAGGGATGAATTGTGAAATTAAGGAA
781 GAGTGGAGACTTTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAATTTTGAAATTAAGGAA
* * *
19320 AATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATGAATATCGTTCATCACAATG
846 AATAGGGCAA-AAAAAG-TTTTCATGCAAAAGAAAATCATAAATATCGTTCATCACAATG
*
19380 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCTCGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTG
* * *
19445 TCTCATCCAAGGCATGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACAAAAT
66 TCTCATCCAAGGCACGAACATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAAT
* *
19510 CAAAGCATCAATATTATGTATCTGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAA
131 CAAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAA
* * * *
19575 GGGGGATTAGCAAGACAATTCATGTGTGTCTTAATTAAGACACAAACTTTCCTTTTGTCAAAAAT
196 TGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTCTGTCAAAAAT
* *
19640 GGTGGAAAAAAAACATTTTTTTGCGACTCCAAAGCATCAAT-TCA-GTATCCTAATGAAGGGAAT
261 GGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
19703 GTGCTTTTGCTT
326 GTGCTTTTGCTT
19715 TGCAAATCTC
Statistics
Matches: 1929, Mismatches: 189, Indels: 49
0.89 0.09 0.02
Matches are distributed among these distances:
895 11 0.01
896 232 0.12
897 40 0.02
898 17 0.01
899 401 0.21
903 569 0.29
904 8 0.00
905 328 0.17
907 2 0.00
908 86 0.04
909 2 0.00
912 1 0.00
913 1 0.00
914 13 0.01
915 211 0.11
916 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (903 bp):
AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTG
TCTCATCCAAGGCACGAACATAGACTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAAT
CAAAGCATCAATATCATGTATCCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAA
TGGGGATTAGCAAGACAATTCATGTGTGTCTTATTTAAGAGACAAACTTTCCTTCTGTCAAAAAT
GGTGGAAAGAAAACATTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
GTGCTTTTGCTTCACAATCTCGAAAAGAGTGGAGACTTTAACGAGAATTGATGCTTGTCATATTT
CAGTGGAAAAGCAAATCATCAACATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCACGGACTTAGACT
TTACAAAAATTGGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCGTGTATCCTTA
TGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTACAATTCATGTT
TGTCCTTTTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAGAGAAAACATTTTCTTGCGA
CACCAAAGCATTAATGTCATGTATCCGAATGAAGGGAACGTGCTTTCGCTTCTCAATGTTGAAAA
GAGTGGAGACTTTTATGAGAATTGATGCTTGTCATAATTAAGGGATGAATTTTGAAATTAAGGAA
AATAGGGCAAAAAAAGTTTTCATGCAAAAGAAAATCATAAATATCGTTCATCACAATG
Found at i:19256 original size:429 final size:428
Alignment explanation
Indices: 18434--19287 Score: 1291
Period size: 429 Copynumber: 2.0 Consensus size: 428
18424 TAAAAAAAGT
* *
18434 TTTCATGCAAAAGAAAATCATAAATATCGTTCATCACAATGAGGAGAATGTGTTTATAGTGCCTA
1 TTTCATGCAAAAGAAAATCATAAACATCGTTCATCACAATGAGGAGAATGTGTTTATAGTGCCAA
18499 ATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATCTAAGGCACGAATATAGA
66 ATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATCTAAGGCACGAATATAGA
* *
18564 CTTTACAAAAATTGGTAGCAAGAAAGCCTTTCTTACGAAATCAAAGCATCAATATCATGTATCCG
131 CTTTACAAAAACTGGTAGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCATGTATCCG
18629 TATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCAAGACAATTCATG
196 TATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCAAGACAATTCATG
* * * * *
18694 TGTGTCTTATTTAAGAGACAAACTTTCCTTTTGTCAAAAATGGTGGAAAGAAAACATTTTTTTGC
261 TGTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGC
* * ** *
18759 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGCTTCACAATCTCGAA
326 GACACCAAAGCATCAATGTCATGTATCCGAATGAAGGGAACGCACTTTCGCTTCACAATCTCGAA
*
18824 AAGAGTGGTGACTTTAACGAGAATTGATGCTTGTCATA
391 AAGAGTGGAGACTTTAACGAGAATTGATGCTTGTCATA
* * * * *
18862 TTTCAGTGGAAAAGCAAATCATCAACATCGTTTATC-CTAATGGGGAGAATGTGTTTATAGTGCC
1 TTTCA-TGCAAAAGAAAATCATAAACATCGTTCATCAC-AATGAGGAGAATGTGTTTATAGTGCC
* * * * *
18926 AAATCGCAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGGCATGGACT-T
64 AAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATCTAAGGCA-CGAATAT
* *
18990 AGACTTTACAAAAACTGGTGGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCGTGTAT
128 AGACTTTACAAAAACTGGTAGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCATGTAT
* * **
19055 CCTTATGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTACAATTC
193 CCGTATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCAAGACAATTC
* * *
19120 ATGTTTGTACTT-TTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGAGAGAAAACATTTTC
258 ATGTGTGT-CTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTC
* * *
19184 TTGCGACACCAAAGCATTAATGTCATGTATCCGAATGAAGGGAACGCACTTTCGCTTCTCAATGT
322 TTGCGACACCAAAGCATCAATGTCATGTATCCGAATGAAGGGAACGCACTTTCGCTTCACAATCT
* * *
19249 TGAAAAGAGTGGAGACTTTTATGAGAATTGATGCTTGTC
387 CGAAAAGAGTGGAGACTTTAACGAGAATTGATGCTTGTC
19288 GTAATTAAGG
Statistics
Matches: 382, Mismatches: 40, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
428 6 0.02
429 370 0.97
430 6 0.02
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (428 bp):
TTTCATGCAAAAGAAAATCATAAACATCGTTCATCACAATGAGGAGAATGTGTTTATAGTGCCAA
ATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATCTAAGGCACGAATATAGA
CTTTACAAAAACTGGTAGCAAGAAAGCCTTTCTTAAGAAATCAAAGCATCAATATCATGTATCCG
TATGAGAAGACAAAGTTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCAAGACAATTCATG
TGTGTCTTATTTAAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGC
GACACCAAAGCATCAATGTCATGTATCCGAATGAAGGGAACGCACTTTCGCTTCACAATCTCGAA
AAGAGTGGAGACTTTAACGAGAATTGATGCTTGTCATA
Done.