genome.fa.s1985.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1985
Parameters: 2 7 7 80 10 50 1000
Length:  83953

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6115--6179	34	1.9	34	93	6	114	30	24	12	32	1.92
6851--6897	21	2.2	21	96	0	85	44	14	12	27	1.82
9232--9263	10	3.1	11	91	8	50	37	0	25	37	1.56
9425--9481	29	2.0	29	82	6	71	36	17	17	28	1.93
9549--9585	10	3.7	10	85	0	56	51	21	2	24	1.61
18540--18688	75	2.0	76	84	7	196	22	18	19	38	1.93
26057--26082	4	6.5	4	100	0	52	76	0	0	23	0.78
30166--30209	21	2.0	22	86	13	63	50	9	9	31	1.65
30165--30213	21	2.3	20	80	19	55	48	8	8	34	1.62
30678--30737	9	6.3	10	75	21	58	41	0	0	58	0.98
30680--30737	27	2.1	28	84	9	75	41	0	0	58	0.98
32930--32963	14	2.5	13	81	9	50	58	0	2	38	1.13
33375--33415	14	3.0	14	86	13	59	48	0	0	51	1.00
34235--34292	12	5.0	12	76	12	50	37	1	0	60	1.07
35021--35074	21	2.6	21	82	5	65	64	0	1	33	1.04
35029--35074	7	6.7	7	85	2	58	63	0	2	34	1.07
38200--38233	2	17.0	2	100	0	68	50	0	0	50	1.00
41749--41874	8	15.9	8	68	21	54	40	0	0	58	1.03
41821--41900	26	3.0	27	77	15	85	35	0	0	65	0.93
41887--41939	24	2.2	24	83	6	63	49	1	0	49	1.12
42491--42515	13	1.9	13	100	0	50	32	8	0	60	1.26
46997--47029	17	2.1	17	88	11	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47239--47277	19	2.1	19	90	9	62	84	2	12	0	0.72
47941--47980	2	20.0	2	100	0	80	50	0	0	50	1.00
54887--54951	34	1.9	34	90	0	103	30	4	16	47	1.67
55505--55531	13	2.1	13	100	0	54	55	14	7	22	1.64
56585--56652	23	3.0	23	75	12	68	47	0	0	52	1.00
56580--56667	34	2.6	34	76	13	85	46	0	0	53	1.00
56828--56862	18	1.9	18	88	0	52	40	0	5	54	1.24
59681--59784	16	6.4	16	78	1	82	49	25	11	13	1.76
59681--59752	16	4.4	16	84	5	83	50	27	11	11	1.72
59747--59801	16	3.4	16	74	0	65	47	16	14	21	1.82
59708--59802	32	2.9	33	84	9	124	47	23	12	16	1.81
59795--59853	23	2.6	23	73	10	66	49	22	6	22	1.73
60380--60480	16	6.2	16	68	5	69	42	27	14	14	1.85
60407--60469	32	2.0	32	84	6	83	39	31	15	12	1.85
61899--61973	20	3.8	20	80	0	96	33	13	12	41	1.81
61899--61976	40	2.0	39	89	2	120	33	12	12	41	1.82
66375--66401	13	2.1	13	100	0	54	29	14	14	40	1.86
66387--66441	19	2.8	19	76	10	58	34	14	14	36	1.87
71050--71115	20	3.7	20	73	26	83	39	15	18	27	1.90
71070--71127	13	4.9	13	72	23	65	37	15	17	29	1.90
71049--71127	33	2.4	33	100	0	158	39	15	17	27	1.90
71173--71201	13	2.2	13	100	0	58	31	13	17	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78476--78550	20	3.8	20	80	3	80	40	12	13	34	1.81
78473--78550	40	2.0	39	87	2	111	39	12	12	34	1.82
78939--79047	45	2.3	48	81	6	125	31	19	29	20	1.97
79078--79967	32	27.9	32	90	4	1290	17	17	32	31	1.94
79963--81218	27	46.6	28	79	13	490	29	14	32	23	1.94
79963--81218	55	23.3	54	83	9	1405	29	14	32	23	1.94
80089--81214	27	41.9	27	86	7	1488	29	14	32	23	1.94
80089--81214	55	20.9	54	85	7	1463	29	14	32	23	1.94
80525--80564	21	1.9	21	89	0	62	25	20	30	25	1.99
80733--80775	21	2.0	21	95	0	77	23	18	30	27	1.98
80000--81214	82	15.1	81	83	8	1470	29	14	32	23	1.94
82232--82263	11	2.8	12	95	4	57	0	0	9	90	0.45
82541--82590	22	2.2	23	85	3	66	6	12	10	72	1.28

Tables:   1

The End!