Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1987
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 242289
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
File 1 of 2
Found at i:4478 original size:25 final size:24
Alignment explanation
Indices: 4429--4479 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
4419 TGATATGAAT
*
4429 TTTGATTTTTTAAACTTTCACTTA
1 TTTGATTTTTTAAACTTTAACTTA
*
4453 TTTGATTCTTTT-AACTTTGAATTTA
1 TTTGATT-TTTTAAACTTT-AACTTA
4478 TT
1 TT
4480 ACAATATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.24, C:0.10, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTGATTTTTTAAACTTTAACTTA
Found at i:6924 original size:30 final size:31
Alignment explanation
Indices: 6860--6925 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
6850 TTTGGTTCCC
* * **
6860 AAATAATATTTTTGATCAAAAATTTTGTCAG
1 AAATAATAATTTTGATCAAAAAATTTCACAG
*
6891 AAATAATAATTTTGA-CAAAAAATTTCACCG
1 AAATAATAATTTTGATCAAAAAATTTCACAG
6921 AAATA
1 AAATA
6926 GTATTTTCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.35
Consensus pattern (31 bp):
AAATAATAATTTTGATCAAAAAATTTCACAG
Found at i:7793 original size:14 final size:15
Alignment explanation
Indices: 7768--7796 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7758 ATAATAAATT
7768 AAATATATTTTTTAA
1 AAATATATTTTTTAA
7783 AAATA-ATTTTTTAA
1 AAATATATTTTTTAA
7797 TTATTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATATATTTTTTAA
Found at i:8737 original size:2 final size:2
Alignment explanation
Indices: 8730--8765 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8720 CATTATTATG
*
8730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8766 GCTGGTATGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:9185 original size:20 final size:20
Alignment explanation
Indices: 9162--9200 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9152 TTTGAAAAAA
*
9162 TAGATTTGGATTAAAAAATT
1 TAGATTTAGATTAAAAAATT
*
9182 TAGATTTAGATTTAAAAAT
1 TAGATTTAGATTAAAAAAT
9201 CCAAATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (20 bp):
TAGATTTAGATTAAAAAATT
Found at i:9629 original size:32 final size:31
Alignment explanation
Indices: 9588--9650 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 31
9578 GTTTTAAAAA
*
9588 TTATTAAATTTACGAA-TAATTATATTTAATAT
1 TTATCAAATTTA-GAAGTAATTATA-TTAATAT
*
9620 TTATCAAATTTATAAGTAATTATATTAATAT
1 TTATCAAATTTAGAAGTAATTATATTAATAT
9651 CCATCAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 9 0.32
32 19 0.68
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (31 bp):
TTATCAAATTTAGAAGTAATTATATTAATAT
Found at i:9657 original size:31 final size:32
Alignment explanation
Indices: 9604--9665 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
9594 AATTTACGAA
**
9604 TAATTATATTTAATATTTATCAAATTTATAAG
1 TAATTATATTTAATATCCATCAAATTTATAAG
*
9636 TAATTATA-TTAATATCCATCAATTTTATAA
1 TAATTATATTTAATATCCATCAAATTTATAA
9666 TCAATATCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 19 0.70
32 8 0.30
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (32 bp):
TAATTATATTTAATATCCATCAAATTTATAAG
Found at i:9959 original size:7 final size:7
Alignment explanation
Indices: 9949--10014 Score: 62
Period size: 7 Copynumber: 9.1 Consensus size: 7
9939 TACAAATAAA
9949 AAATTTT
1 AAATTTT
9956 AAATTTAT
1 AAATTT-T
*
9964 AAATTTA
1 AAATTTT
*
9971 AAAGTTAT
1 AAA-TTTT
9979 AAATTTT
1 AAATTTT
*
9986 AAATATCT
1 AAAT-TTT
9994 AAATTTT
1 AAATTTT
10001 -AATTTT
1 AAATTTT
*
10007 AAAATTT
1 AAATTTT
10014 A
1 A
10015 GCCTAAATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
6 6 0.12
7 24 0.50
8 18 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (7 bp):
AAATTTT
Found at i:9969 original size:15 final size:15
Alignment explanation
Indices: 9949--10013 Score: 78
Period size: 15 Copynumber: 4.4 Consensus size: 15
9939 TACAAATAAA
9949 AAATTTTAAATTTAT
1 AAATTTTAAATTTAT
* *
9964 AAATTTAAAAGTTAT
1 AAATTTTAAATTTAT
* *
9979 AAATTTTAAATATCT
1 AAATTTTAAATTTAT
*
9994 AAATTTTAATTTTA-
1 AAATTTTAAATTTAT
10008 AAATTT
1 AAATTT
10014 AGCCTAAATT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
14 6 0.15
15 35 0.85
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
AAATTTTAAATTTAT
Found at i:13102 original size:13 final size:13
Alignment explanation
Indices: 13054--13103 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
13044 TAAACTTACC
13054 AAAAGCAATTCAT
1 AAAAGCAATTCAT
* *
13067 AAAAACAATTCTAGA
1 AAAAGCAATTC-A-T
13082 AAATAGCAATTCAT
1 AAA-AGCAATTCAT
13096 AAAAGCAA
1 AAAAGCAA
13104 GGCAACATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 15 0.50
14 4 0.13
15 4 0.13
16 7 0.23
ACGTcount: A:0.58, C:0.14, G:0.08, T:0.20
Consensus pattern (13 bp):
AAAAGCAATTCAT
Found at i:14263 original size:24 final size:24
Alignment explanation
Indices: 14202--14254 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
14192 ATATAAAAAT
*
14202 AATATAA-TAAAATAATATATTTA
1 AATATAATTAATATAATATATTTA
* *
14225 AATATAATTAATATAATATTTTTT
1 AATATAATTAATATAATATATTTA
14249 AATATA
1 AATATA
14255 TTATTTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AATATAATTAATATAATATATTTA
Found at i:14282 original size:17 final size:19
Alignment explanation
Indices: 14260--14303 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
14250 ATATATTATT
14260 TATATTTAA-AATTT-TAA
1 TATATTTAATAATTTATAA
*
14277 TATATTTAATAATTTATAT
1 TATATTTAATAATTTATAA
14296 TATATTTA
1 TATATTTA
14304 TATGTATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 9 0.38
18 5 0.21
19 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATTTAATAATTTATAA
Found at i:14301 original size:19 final size:19
Alignment explanation
Indices: 14246--14303 Score: 70
Period size: 18 Copynumber: 3.2 Consensus size: 19
14236 TATAATATTT
14246 TTTAAT-ATATTAT-TTATA
1 TTTAATAAT-TTATATTATA
*
14264 TTTAA-AATTT-TAATATA
1 TTTAATAATTTATATTATA
14281 TTTAATAATTTATATTATA
1 TTTAATAATTTATATTATA
14300 TTTA
1 TTTA
14304 TATGTATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 1 0.03
17 11 0.32
18 12 0.35
19 10 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAATAATTTATATTATA
Found at i:14331 original size:47 final size:47
Alignment explanation
Indices: 14274--14369 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
14264 TTTAAAATTT
*
14274 TAATATATTTAATAATTTATATTATATTTATATGTATACACCAAACA
1 TAATATATTTAATAATTTATATTATATTTATATATATACACCAAACA
*
14321 TAATATATTTAATAATTTATATTATATTTATATATATACATCAAACA
1 TAATATATTTAATAATTTATATTATATTTATATATATACACCAAACA
14368 TA
1 TA
14370 GAAGAAAAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (47 bp):
TAATATATTTAATAATTTATATTATATTTATATATATACACCAAACA
Found at i:17676 original size:24 final size:25
Alignment explanation
Indices: 17627--17681 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
17617 CATAAATTTA
* *
17627 AAATTAA-AAAAATTGGCCCAACAT
1 AAATTAAGTAAAATAGGCCCAACAT
17651 -AATTAAGTAAAATAGGCCCCAA-AT
1 AAATTAAGTAAAATAGG-CCCAACAT
17675 AAATTAA
1 AAATTAA
17682 TCAAATAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 11 0.42
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.22
Consensus pattern (25 bp):
AAATTAAGTAAAATAGGCCCAACAT
Found at i:18076 original size:51 final size:51
Alignment explanation
Indices: 18027--18933 Score: 232
Period size: 51 Copynumber: 18.1 Consensus size: 51
18017 ATCATTATAT
* *
18027 GGTCCTAGCTAATATGGACTTTGGTATCTATAAGGCTTGACCTCCTTATAGA
1 GGTCCTAGCTAATGTGGACTTTGGT-TCTATAAGGCTTGACCTCCTTATACA
* * * * * **
18079 AGTGCTAGCTAATGTGAACTTAGATTCTATAAGGCTTGACCTTTTTATACA
1 GGTCCTAGCTAATGTGGACTTTGGTTCTATAAGGCTTGACCTCCTTATACA
* * * *
18130 GATGCC-AACTAATATGGAC-TTGGATTCTATAAGGCTTGATCTCCTTATACA
1 GGT-CCTAGCTAATGTGGACTTTGG-TTCTATAAGGCTTGACCTCCTTATACA
* *
18181 AGTGCC-AGCTAATGTGGACTTTAGGTTCTATAGGGCTTGACCT-CTCTATACA
1 GGT-CCTAGCTAATGTGGACTTT-GGTTCTATAAGGCTTGACCTCCT-TATACA
* ** * * * * *
18233 GGTGCTAGCTAATGTGGACTTTAATTCTGT-AGCGCATGAGCTCC-CATATA
1 GGTCCTAGCTAATGTGGACTTTGGTTCTATAAG-GCTTGACCTCCTTATACA
** * * * * * *
18283 GGTGCC-AAATAATATAGA-----GCTCT-TCAAGGCTTGAGCT-CTCTACATA
1 GGT-CCTAGCTAATGTGGACTTTGGTTCTAT-AAGGCTTGACCTCCT-TATACA
* * ** * *
18329 GGTGCC-AACTAATATGGACTTTGACTCTATAAGGCTTGACTTCTTTATACA
1 GGT-CCTAGCTAATGTGGACTTTGGTTCTATAAGGCTTGACCTCCTTATACA
* * * *
18380 GGTGCC-AACTAATATGGACATTAGGTTTTAT-AGTGCTTGACCT-C-----C-
1 GGT-CCTAGCTAATGTGGAC-TTTGGTTCTATAAG-GCTTGACCTCCTTATACA
* * ** * * * * *
18425 ---CC-AGCTAGTGTGAACTTTGACTCTATAGGGCTTAACCTCATAATATA
1 GGTCCTAGCTAATGTGGACTTTGGTTCTATAAGGCTTGACCTCCTTATACA
* * * * * * * * *
18472 GGTACAAGTTAACGTGGACTTTGGTATCTAT-TGGACTTAACTTCTTTATATA
1 GGTCCTAGCTAATGTGGACTTTGGT-TCTATAAGG-CTTGACCTCCTTATACA
* * * * * *
18524 GCTGAC-AGCTAGTGTGGAC-TTGGATTTTATAGGGCTTGACCT-CTGTATATA
1 GGT-CCTAGCTAATGTGGACTTTGG-TTCTATAAGGCTTGACCTCCT-TATACA
* * * * * * *
18575 GATGCC-AGCTAGTGTGGAC-TTGCATTCTATAGGGCTAGACCTCTTTATGCA
1 GGT-CCTAGCTAATGTGGACTTTG-GTTCTATAAGGCTTGACCTCCTTATACA
* * * *
18626 GGTGCC-AGCTAATATGGACTTTAGGTTCTACAGGGCTTGACCTCCCTT-TATA
1 GGT-CCTAGCTAATGTGGACTTT-GGTTCTATAAGGCTTGACCT-CCTTATACA
* ** * * * * * * *
18678 GTTTTTAACTAGTGTGGACTTAGATTTTATAGGGCTTGACCT-CTCTATAAA
1 GGTCCTAGCTAATGTGGACTTTGGTTCTATAAGGCTTGACCTCCT-TATACA
* * * * *
18729 GGTGCC-AACTAATATGAACTTTGGGTTTTATAGGGCTTGACCTCCTTATACA
1 GGT-CCTAGCTAATGTGGACTTT-GGTTCTATAAGGCTTGACCTCCTTATACA
* * * *
18781 AGTGCC-AACTAGTGTGGAC-TTGGATTCTATAAGGCTTGACCTCGC-CATACA
1 GGT-CCTAGCTAATGTGGACTTTGG-TTCTATAAGGCTTGACCTC-CTTATACA
* * * ** *
18832 AGTGCTAGCTAATGTGGACTTTGGTT-T-TAA---TAGGACCTATTTATATA
1 GGTCCTAGCTAATGTGGACTTTGGTTCTATAAGGCT-TGACCTCCTTATACA
* * ** * * *
18879 GGTGCTAGCTAATGTGGACTTGGGGTTCTATCGGGCTTGAACTCTTTATATA
1 GGTCCTAGCTAATGTGGACTT-TGGTTCTATAAGGCTTGACCTCCTTATACA
18931 GGT
1 GGT
18934 GCCAACTAGT
Statistics
Matches: 641, Mismatches: 151, Indels: 126
0.70 0.16 0.14
Matches are distributed among these distances:
40 15 0.02
41 12 0.02
44 2 0.00
45 11 0.02
46 24 0.04
47 29 0.05
48 4 0.01
49 6 0.01
50 26 0.04
51 293 0.46
52 208 0.32
53 11 0.02
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (51 bp):
GGTCCTAGCTAATGTGGACTTTGGTTCTATAAGGCTTGACCTCCTTATACA
Found at i:18245 original size:103 final size:101
Alignment explanation
Indices: 18033--18852 Score: 430
Period size: 103 Copynumber: 8.1 Consensus size: 101
18023 ATATGGTCCT
* * * *
18033 AGCTAATATGGACTTTGG-TATCTATAAGGCTTGACCTCCTTATAGAAGTGCTAGCTAATGTGAA
1 AGCTAATATGGAC-TTGGAT-TCTATAAGGCTTGACCTCCTTATACAAGTGCCAACTAATGTGGA
* * * * *
18097 CTTAGATTCTATAAGGCTTGACCTTTTTATACAGATGCC
64 CTT-GGTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
* * *
18136 AACTAATATGGACTTGGATTCTATAAGGCTTGATCTCCTTATACAAGTGCCAGCTAATGTGGACT
1 AGCTAATATGGACTTGGATTCTATAAGGCTTGACCTCCTTATACAAGTGCCAACTAATGTGGAC-
*
18201 TTAGGTTCTATAGGGCTTGACCTCTCTATACAGGTGCT
65 TT-GGTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
* ** * * * * * * * * *
18239 AGCTAATGTGGACTTTAATTCTGT-AGCGCATGAGCTCC-CATATAGGTGCCAAATAATATAGAG
1 AGCTAATATGGACTTGGATTCTATAAG-GCTTGACCTCCTTATACAAGTGCCAACTAATGTGGA-
* * * *
18302 C-T-CTTC-A-A-GGCTTGAGCTCTCTACATAGGTGCC
64 CTTGGTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
* * * * * * *
18335 AACTAATATGGACTTTGACTCTATAAGGCTTGACTTCTTTATACAGGTGCCAACTAATATGGACA
1 AGCTAATATGGACTTGGATTCTATAAGGCTTGACCTCCTTATACAAGTGCCAACTAATGTGGAC-
* *
18400 TTAGGTTTTATAGTGCTTGA-C-CTC----C-----CC
65 TT-GGTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
* * * * * * * * * * * * * *
18427 AGCTAGTGTGAACTTTGACTCTATAGGGCTTAACCTCATAATATAGGT-ACAAGTTAACGTGGAC
1 AGCTAATATGGACTTGGATTCTATAAGGCTTGACCTCCTTATACAAGTGCCAA-CTAATGTGGAC
* * * * * * * *
18491 TTTGGTATCTATTGGACTTAACTTCTTTATATAGCTGAC
65 -TTGGT-TCTATAGGGCTTGACCTCTCTATACAGGTGCC
* * * * * * *
18530 AGCTAGTGTGGACTTGGATTTTATAGGGCTTGACCT-CTGTATA-TAGATGCCAGCTAGTGTGGA
1 AGCTAATATGGACTTGGATTCTATAAGGCTTGACCTCCT-TATACAAG-TGCCAACTAATGTGGA
* * * *
18593 CTTGCATTCTATAGGGCTAGACCTCTTTATGCAGGTGCC
64 CTTG-GTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
* * * *** *
18632 AGCTAATATGGACTTTAGG-TTCTACAGGGCTTGACCTCCCTT-TA-TAGTTTTTAACTAGTGTG
1 AGCTAATATGGAC-TT-GGATTCTATAAGGCTTGACCT-CCTTATACAAG-TGCCAACTAATGTG
* * *
18694 GACTTAGATTTTATAGGGCTTGACCTCTCTATAAAGGTGCC
62 GACTT-GGTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
* * * * * *
18735 AACTAATATGAACTTTGGGTTTTATAGGGCTTGACCTCCTTATACAAGTGCCAACTAGTGTGGAC
1 AGCTAATATGGAC-TTGGATTCTATAAGGCTTGACCTCCTTATACAAGTGCCAACTAATGTGGAC
* * * * *
18800 TTGGATTCTATAAGGCTTGACCTCGCCATACAAGTGCT
65 TTGG-TTCTATAGGGCTTGACCTCTCTATACAGGTGCC
*
18838 AGCTAATGTGGACTT
1 AGCTAATATGGACTT
18853 TGGTTTTAAT
Statistics
Matches: 550, Mismatches: 128, Indels: 79
0.73 0.17 0.10
Matches are distributed among these distances:
91 6 0.01
92 59 0.11
94 2 0.00
96 48 0.09
97 23 0.04
98 2 0.00
99 3 0.01
100 2 0.00
101 5 0.01
102 114 0.21
103 276 0.50
104 8 0.01
105 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (101 bp):
AGCTAATATGGACTTGGATTCTATAAGGCTTGACCTCCTTATACAAGTGCCAACTAATGTGGACT
TGGTTCTATAGGGCTTGACCTCTCTATACAGGTGCC
Found at i:18705 original size:154 final size:154
Alignment explanation
Indices: 18532--18823 Score: 372
Period size: 154 Copynumber: 1.9 Consensus size: 154
18522 TAGCTGACAG
* * * * * * *
18532 CTAGTGTGGACTTGGATTTTATAGGGCTTGACCTCTGTATATAGATGCCAGCTAGTGTGGAC-TT
1 CTAGTGTGGACTTAGATTTTATAGGGCTTGACCTCTCTATAAAGATGCCAACTAATATGAACTTT
* * * * *
18596 GCATTCTATAGGGCTAGACCTCTTTATGCAGGTGCCAGCTAATATGGACTTTAGG-TTCTACAGG
66 GCATTCTATAGGGCTAGACCTCCTTATACAAGTGCCAACTAATATGGAC-TT-GGATTCTACAAG
18660 GCTTGACCTCCCTTTATAGTTTTTAA
129 GCTTGACCTCCCTTTATAGTTTTTAA
*
18686 CTAGTGTGGACTTAGATTTTATAGGGCTTGACCTCTCTATAAAGGTGCCAACTAATATGAACTTT
1 CTAGTGTGGACTTAGATTTTATAGGGCTTGACCTCTCTATAAAGATGCCAACTAATATGAACTTT
** * * * * *
18751 GGGTTTTATAGGGCTTGACCTCCTTATACAAGTGCCAACTAGTGTGGACTTGGATTCTATAAGGC
66 GCATTCTATAGGGCTAGACCTCCTTATACAAGTGCCAACTAATATGGACTTGGATTCTACAAGGC
18816 TTGACCTC
131 TTGACCTC
18824 GCCATACAAG
Statistics
Matches: 116, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
153 2 0.02
154 73 0.63
155 41 0.35
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (154 bp):
CTAGTGTGGACTTAGATTTTATAGGGCTTGACCTCTCTATAAAGATGCCAACTAATATGAACTTT
GCATTCTATAGGGCTAGACCTCCTTATACAAGTGCCAACTAATATGGACTTGGATTCTACAAGGC
TTGACCTCCCTTTATAGTTTTTAA
Found at i:20033 original size:16 final size:16
Alignment explanation
Indices: 19973--20034 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
19963 GCACGAGCAC
*
19973 AAAA-GCATGTGAATG
1 AAAATGCATGTGATTG
* *
19988 AGAATGCATGTGAGTG
1 AAAATGCATGTGATTG
* *
20004 TAAATGCTTGTGATTG
1 AAAATGCATGTGATTG
*
20020 AAAATGCATATGATT
1 AAAATGCATGTGATT
20035 ACGAATGAGA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
15 3 0.08
16 34 0.92
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (16 bp):
AAAATGCATGTGATTG
Found at i:20154 original size:80 final size:79
Alignment explanation
Indices: 20038--20194 Score: 190
Period size: 80 Copynumber: 2.0 Consensus size: 79
20028 TATGATTACG
* * * *
20038 AATGAGATGAGTGTGATTGCACAACAGTATAGATGCTCGTAAGTGCAAATGGACATAAATAGGAA
1 AATGAGATAAGTGCGATTGCACAACAGTATAGATGCTCGTAAGTACAAATGAACATAAATAGGAA
20103 TGCACATGAGTGCA
66 TGCACATGAGTGCA
** * * * * *
20117 AATGTAGATAAGTGCGATTGCACATGAGTAT-GAATGCTTGTGAGTACGAATGAACATGAATGGG
1 AATG-AGATAAGTGCGATTGCACAACAGTATAG-ATGCTCGTAAGTACAAATGAACATAAATAGG
20181 AATGCACATGAGTG
64 AATGCACATGAGTG
20195 TGAAGGCACA
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 5 0.08
80 60 0.92
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.24
Consensus pattern (79 bp):
AATGAGATAAGTGCGATTGCACAACAGTATAGATGCTCGTAAGTACAAATGAACATAAATAGGAA
TGCACATGAGTGCA
Found at i:20193 original size:32 final size:32
Alignment explanation
Indices: 20157--20221 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
20147 TGAATGCTTG
* * *
20157 TGAGTACGAATGAACATGAATGGGAATGCACA
1 TGAGTACGAAGGAACATAAATGAGAATGCACA
** *
20189 TGAGTGTGAAGGCACATAAATGAGAATGCACA
1 TGAGTACGAAGGAACATAAATGAGAATGCACA
20221 T
1 T
20222 AACTGTAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.20
Consensus pattern (32 bp):
TGAGTACGAAGGAACATAAATGAGAATGCACA
Found at i:20222 original size:16 final size:16
Alignment explanation
Indices: 20164--20223 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
20154 TTGTGAGTAC
* * *
20164 GAATGAACATGAATGG
1 GAATGCACATAAATGA
* * *
20180 GAATGCACATGAGTGT
1 GAATGCACATAAATGA
*
20196 GAAGGCACATAAATGA
1 GAATGCACATAAATGA
20212 GAATGCACATAA
1 GAATGCACATAA
20224 CTGTAAATGC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (16 bp):
GAATGCACATAAATGA
Found at i:20320 original size:10 final size:10
Alignment explanation
Indices: 20305--20334 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
20295 GGTTCGTGAG
20305 CATGAATGCA
1 CATGAATGCA
20315 CATGAATGCA
1 CATGAATGCA
*
20325 GATGAATGCA
1 CATGAATGCA
20335 TGTGAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (10 bp):
CATGAATGCA
Found at i:21169 original size:13 final size:13
Alignment explanation
Indices: 21151--21180 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
21141 GCTAAAACTC
21151 ACATTGTATCAAT
1 ACATTGTATCAAT
*
21164 ACATTGTATCGAT
1 ACATTGTATCAAT
21177 ACAT
1 ACAT
21181 GAAGGATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
ACATTGTATCAAT
Found at i:21211 original size:20 final size:20
Alignment explanation
Indices: 21168--21220 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
21158 ATCAATACAT
* *
21168 TGTATCGATACATGAAGGAT
1 TGTATCGATACATGAAGAAA
**
21188 TGTATCGATACATGGTGAAA
1 TGTATCGATACATGAAGAAA
*
21208 TGTATCAATACAT
1 TGTATCGATACAT
21221 TGAGTCCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAA
Found at i:25092 original size:32 final size:32
Alignment explanation
Indices: 25056--25120 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
25046 CATTTTTCAT
* * *
25056 TGTTCATGTATTGATACATTACTGTTCATCAC
1 TGTTCATGAATCGATACATCACTGTTCATCAC
25088 TGTTCATGAATCGATACATCACTGTTCATCAC
1 TGTTCATGAATCGATACATCACTGTTCATCAC
25120 T
1 T
25121 ATACATTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.40
Consensus pattern (32 bp):
TGTTCATGAATCGATACATCACTGTTCATCAC
Found at i:25180 original size:20 final size:20
Alignment explanation
Indices: 25155--25208 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
25145 TTTCAAATGC
25155 TTGTATCGATACATTATGAA
1 TTGTATCGATACATTATGAA
*
25175 TTGTATCGATACGTTATGAA
1 TTGTATCGATACATTATGAA
* *
25195 TTATATCAATACAT
1 TTGTATCGATACAT
25209 AGGAGCGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTATGAA
Found at i:28630 original size:33 final size:33
Alignment explanation
Indices: 28574--28638 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
28564 ACTGCCCAGA
*
28574 TGTATTGATGCTACGTTCCTAGTATCGATACAT
1 TGTATTGATACTACGTTCCTAGTATCGATACAT
** *
28607 TGTATTGATACTGTGTTCTTAGTATCGATACA
1 TGTATTGATACTACGTTCCTAGTATCGATACA
28639 AGGGCACTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (33 bp):
TGTATTGATACTACGTTCCTAGTATCGATACAT
Found at i:31289 original size:13 final size:13
Alignment explanation
Indices: 31271--31295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31261 ACATATTGCT
31271 TTGTATCGATACG
1 TTGTATCGATACG
31284 TTGTATCGATAC
1 TTGTATCGATAC
31296 ATGTTCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACG
Found at i:31294 original size:33 final size:32
Alignment explanation
Indices: 31252--31314 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
31242 CACACCCAAA
* *
31252 TGTATCGATACATATTGCTTTGTATCGATACGT
1 TGTATCGATACATATT-CATTGTATCAATACGT
*
31285 TGTATCGATACATGTTCATTGTATCAATAC
1 TGTATCGATACATATTCATTGTATCAATAC
31315 ACACTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATATTCATTGTATCAATACGT
Found at i:35727 original size:13 final size:13
Alignment explanation
Indices: 35709--35735 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35699 CTAGCCGTTA
35709 TGTATCGATACAT
1 TGTATCGATACAT
35722 TGTATCGATACAT
1 TGTATCGATACAT
35735 T
1 T
35736 TTAGGATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35864 original size:20 final size:21
Alignment explanation
Indices: 35816--35868 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
35806 CCCAATGACC
**
35816 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
**
35837 AATATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
35857 TGTATCGATACA
1 TGTATCGATACA
35869 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:35874 original size:13 final size:13
Alignment explanation
Indices: 35856--35880 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35846 ACATTTGGTC
35856 ATGTATCGATACA
1 ATGTATCGATACA
35869 ATGTATCGATAC
1 ATGTATCGATAC
35881 TGTGCAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:35923 original size:20 final size:19
Alignment explanation
Indices: 35870--35924 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
35860 ATCGATACAA
**
35870 TGTATCGATACTGTGCAAAT
1 TGTATCGATACT-TTTAAAT
35890 TGTATCGATACTTTTAAAT
1 TGTATCGATACTTTTAAAT
35909 GTGTATCGATACTTTT
1 -TGTATCGATACTTTT
35925 CAGGGTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.16
20 27 0.84
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (19 bp):
TGTATCGATACTTTTAAAT
Found at i:37998 original size:20 final size:19
Alignment explanation
Indices: 37952--38008 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
37942 TTGTATCAAT
*
37952 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGC
* *
37971 TCATTGTATTGATACATGC
1 ACATTGTATCGATACATGC
37990 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
38009 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:38072 original size:13 final size:13
Alignment explanation
Indices: 38054--38105 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
38044 GATACATGGC
38054 ACATTGTATCGAT
1 ACATTGTATCGAT
38067 ACATTGTATCGAT
1 ACATTGTATCGAT
38080 ACA-TG-AT-G--
1 ACATTGTATCGAT
38088 A-ATTGTATCGAT
1 ACATTGTATCGAT
38100 ACATTG
1 ACATTG
38106 CTTCAAACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:38074 original size:33 final size:32
Alignment explanation
Indices: 38037--38105 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 32
38027 CTACCACTAT
38037 TTGTATCGATACATG-GCACATTGTATCGATACA
1 TTGTATCGATACATGAG-A-ATTGTATCGATACA
38070 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGA-GAATTGTATCGATACA
38103 TTG
1 TTG
38106 CTTCAAACAG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 32 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACATGAGAATTGTATCGATACA
Found at i:44979 original size:164 final size:162
Alignment explanation
Indices: 44648--45051 Score: 399
Period size: 164 Copynumber: 2.5 Consensus size: 162
44638 TCCGTAAATG
*
44648 TTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTTATATTAAATTAGTTT
1 TTTTCTTGGTTTTTAATTTTT-AAA-TCATCAAATATTATTATTTAATTCATATTAAATTAGTTT
** * * * * * *
44713 TCAAAAATTCATTCATTTTCATTCATTTTCCATTTTTATTGAAATTCCCTTGTTTTTGAAAAGTA
64 AAAAAAATTCATTCATTTTCATGCATTTTCCATTTTTATTGAAATCCCCCTATTTGTGAAAAATA
* * * *
44778 GAGTTTTTTGCTTCTAAAATGTTTTCGGTGGGAT
129 GAGTTTTCTACTCCTAAAATGTTTTCGGGGGGAT
* *
44812 TTTTCTTAGTTTTTAATTTTTAAA-CATCAAATATTATTATTTAATTCATATTAAATTCGTTTAA
1 TTTTCTTGGTTTTTAATTTTTAAATCATCAAATATTATTATTTAATTCATATTAAATTAGTTTAA
* * *
44876 AAAAATTCATTTATTTTCATG-AGCTTTT-TATTTTTTCTTTGAAATCCCCCCTATTTGTGAAAA
66 AAAAATTCATTCATTTTCATGCA--TTTTCCA-TTTTT-ATTGAAAT-CCCCCTATTTGTGAAAA
44939 ATCA-AGTTTTCTACTCCGT-AAATGTTTT-GGGGGAGAT
126 AT-AGAGTTTTCTACTCC-TAAAATGTTTTCGGGGG-GAT
** * * * * * *
44976 TTTTCTTGGTTTAAAATTTTTAAAATTCATCTAGTATTATCATTTAACTC-TCATTAAATCAATT
1 TTTTCTTGGTTTTTAATTTTT-AAA-TCATCAAATATTATTATTTAATTCAT-ATTAAATTAGTT
*
45040 TTAAAAAATTCA
63 TAAAAAAATTCA
45052 GTTTATTTCA
Statistics
Matches: 199, Mismatches: 29, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
160 1 0.01
161 56 0.28
162 9 0.05
163 14 0.07
164 74 0.37
165 5 0.03
166 1 0.01
167 39 0.20
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (162 bp):
TTTTCTTGGTTTTTAATTTTTAAATCATCAAATATTATTATTTAATTCATATTAAATTAGTTTAA
AAAAATTCATTCATTTTCATGCATTTTCCATTTTTATTGAAATCCCCCTATTTGTGAAAAATAGA
GTTTTCTACTCCTAAAATGTTTTCGGGGGGAT
Found at i:45417 original size:25 final size:25
Alignment explanation
Indices: 45363--45418 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
45353 TTCATATGAA
* *
45363 AAAGAAAAGAGAAAAAGGGAGAAAGG
1 AAAG-AAAGAGAAAAAGGAAGAAAAG
*
45389 AAAGAAAGA-AAAAAGAGAAGAAAAT
1 AAAGAAAGAGAAAAAG-GAAGAAAAG
45414 AAAGA
1 AAAGA
45419 GAAAATTGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 6 0.23
25 16 0.62
26 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (25 bp):
AAAGAAAGAGAAAAAGGAAGAAAAG
Found at i:51015 original size:20 final size:20
Alignment explanation
Indices: 50990--51088 Score: 73
Period size: 15 Copynumber: 5.7 Consensus size: 20
50980 GTTTGAAGCA
50990 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
51010 ATG--T--AT-CAATACAT-
1 ATGTATCGATACAATTCATC
51024 -TGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
51043 ATG--T--AT-CAATACAT-
1 ATGTATCGATACAATTCATC
51057 -TGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
51076 ATGTATCAATACA
1 ATGTATCGATACA
51089 TTGTATCGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 28
0.65 0.05 0.30
Matches are distributed among these distances:
13 4 0.07
15 16 0.27
16 4 0.07
17 4 0.07
18 16 0.27
20 16 0.27
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:51029 original size:13 final size:12
Alignment explanation
Indices: 51009--51101 Score: 58
Period size: 13 Copynumber: 8.2 Consensus size: 12
50999 TACAATTCAT
51009 CATGTATCAATA
1 CATGTATCAATA
*
51021 CATTGTATCGATA
1 CA-TGTATCAATA
*
51034 CA-AT-TC-AT-
1 CATGTATCAATA
51042 CATGTATCAATA
1 CATGTATCAATA
*
51054 CATTGTATCGATA
1 CA-TGTATCAATA
*
51067 CA-AT-TC-AT-
1 CATGTATCAATA
51075 CATGTATCAATA
1 CATGTATCAATA
*
51087 CATTGTATCGATA
1 CA-TGTATCAATA
51100 CA
1 CA
51102 ATATGCCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 21
0.69 0.08 0.23
Matches are distributed among these distances:
8 4 0.06
9 6 0.10
10 8 0.13
11 6 0.10
12 6 0.10
13 33 0.52
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (12 bp):
CATGTATCAATA
Found at i:51033 original size:33 final size:33
Alignment explanation
Indices: 50991--51103 Score: 226
Period size: 33 Copynumber: 3.4 Consensus size: 33
50981 TTTGAAGCAA
50991 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCATCATGTATCAATACAT
51024 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCATCATGTATCAATACAT
51057 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCATCATGTATCAATACAT
51090 TGTATCGATACAAT
1 TGTATCGATACAAT
51104 ATGCCATGTA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (33 bp):
TGTATCGATACAATTCATCATGTATCAATACAT
Found at i:51112 original size:33 final size:32
Alignment explanation
Indices: 50991--51121 Score: 201
Period size: 33 Copynumber: 4.0 Consensus size: 32
50981 TTTGAAGCAA
50991 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCA-CATGTATCAATACAT
51024 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCA-CATGTATCAATACAT
51057 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCA-CATGTATCAATACAT
*
51090 TGTATCGATACAATATGC-CATGTATCTATACA
1 TGTATCGATACAAT-T-CACATGTATCAATACA
51122 AATAGTGGTA
Statistics
Matches: 95, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
33 93 0.98
34 1 0.01
35 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (32 bp):
TGTATCGATACAATTCACATGTATCAATACAT
Found at i:51195 original size:19 final size:19
Alignment explanation
Indices: 51151--51206 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
51141 CTGCCAGTTT
**
51151 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
51171 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
51190 CATGTATCGATATAATG
1 CATGTATCGATACAATG
51207 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:51748 original size:30 final size:30
Alignment explanation
Indices: 51649--51798 Score: 133
Period size: 30 Copynumber: 4.7 Consensus size: 30
51639 GCTCTCCTTT
*
51649 AAAAATTTCTCCCCCTTGATAA-CTGTTTAA
1 AAAAATTTCTCCCCCTTGATAATCT-TTAAA
* *
51679 AAGATTTTCTCCCCCTTGATAATCATTTTTTTAAAA
1 AAAAATTTCTCCCCCTTGATAATC-----TTT-AAA
51715 AAAAATTTC-CCCCCTTGATAATCATTTAAA
1 AAAAATTTCTCCCCCTTGATAATC-TTTAAA
* * *
51745 AAAAATTGTTTCTCCCTTGATAATCGTTAAA
1 AAAAATT-TCTCCCCCTTGATAATCTTTAAA
*
51776 AAAATTTTTCTCCCCCTTGATAA
1 AAAA-ATTTCTCCCCCTTGATAA
51799 AAATTTATTT
Statistics
Matches: 98, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
30 30 0.31
31 27 0.28
32 15 0.15
35 16 0.16
36 10 0.10
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.39
Consensus pattern (30 bp):
AAAAATTTCTCCCCCTTGATAATCTTTAAA
Found at i:51762 original size:32 final size:30
Alignment explanation
Indices: 51708--51798 Score: 103
Period size: 31 Copynumber: 2.9 Consensus size: 30
51698 TAATCATTTT
* * *
51708 TTTAAAAAAAAATTTCCCCCCTTGATAATC
1 TTTAAAAAAAATTTTTCTCCCTTGATAATC
51738 ATTTAAAAAAAATTGTTTCTCCCTTGATAATC
1 -TTTAAAAAAAATT-TTTCTCCCTTGATAATC
*
51770 GTT-AAAAAAATTTTTCTCCCCCTTGATAA
1 TTTAAAAAAAATTTTTCT--CCCTTGATAA
51799 AAATTTATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
29 5 0.09
30 9 0.17
31 24 0.45
32 15 0.28
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.37
Consensus pattern (30 bp):
TTTAAAAAAAATTTTTCTCCCTTGATAATC
Found at i:52777 original size:27 final size:27
Alignment explanation
Indices: 52747--52820 Score: 130
Period size: 27 Copynumber: 2.7 Consensus size: 27
52737 TTTATTCGTC
52747 GGGGACACTCCAACCCCATTCCTCCGA
1 GGGGACACTCCAACCCCATTCCTCCGA
**
52774 GGGGACACTCCAACCCCATTCCTTGGA
1 GGGGACACTCCAACCCCATTCCTCCGA
52801 GGGGACACTCCAACCCCATT
1 GGGGACACTCCAACCCCATT
52821 TTCAACCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.23, C:0.41, G:0.20, T:0.16
Consensus pattern (27 bp):
GGGGACACTCCAACCCCATTCCTCCGA
Found at i:55165 original size:13 final size:13
Alignment explanation
Indices: 55147--55173 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
55137 ATAGTAACCG
55147 ATGTATCGATACA
1 ATGTATCGATACA
55160 ATGTATCGATACA
1 ATGTATCGATACA
55173 A
1 A
55174 AGAATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:56133 original size:401 final size:402
Alignment explanation
Indices: 55390--56185 Score: 1540
Period size: 401 Copynumber: 2.0 Consensus size: 402
55380 CAAAAATCAC
*
55390 AAGATCACAAAGTTTAACCAAATAAAACACCAAAAGTGCGACATTTCATTTCAAGTGACCGAAGA
1 AAGATCACAAAGTTTAACCAAATAAAACACCAAAAGTGCAACATTTCATTTCAAGTGACCGAAGA
* * *
55455 TGACACTTGTGTACACATAAGTTCATTAAATAAGATTTTTCATAAAAGAATGATAAAGATAATAA
66 TGACAATTATGTACACATAAGGTCATTAAATAAGATTTTTCATAAAAGAATGATAAAGATAATAA
55520 AAAATATAAGTATGAGAGATATTTAAGAAAAATAAAAACTTAGCATAAACATGAAATCAAGGTGG
131 AAAATATAAGTATGAGAGATATTTAAGAAAAATAAAAACTTAGCATAAACATGAAATCAAGGTGG
55585 ATTCATAAGACCAAGTTCTCTTCTAATGGTGCAAAATCTACTTTTGTCAAGTGGTTTACTGAAAA
196 ATTCATAAGACCAAGTTCTCTTCTAATGGTGCAAAATCTACTTTTGTCAAGTGGTTTACTGAAAA
55650 TATCGGCTAGTTGGTGCAAGGTATCTACAAATTCTATTACAACATCCCTTTTTTGCACATGATCT
261 TATCGGCTAGTTGGTGCAAGGTATCTACAAATTCTATTACAACATCCCTTTTTTGCACATGATCT
*
55715 CTAATGAAGTGATGTCTAATTTCAATGTGCTTAGTCCTAGAATGTTGTACCCGATTTTT-GTAAG
326 CTAATGAAGTGATGTCTAATTTCAATGTGCTTAGTCCTAGAATGTTGTACCAGATTTTTAGTAAG
55779 ACATAATTAAAA
391 ACATAATTAAAA
55791 AAGATCACAAAGTTTAACCAAATAAAACACCAAAAGTGCAACATTTCATTTCAAGTGACCGAAGA
1 AAGATCACAAAGTTTAACCAAATAAAACACCAAAAGTGCAACATTTCATTTCAAGTGACCGAAGA
55856 TGACAATTATGTACACATAAGGTCATTAAATAAGATTTTTCATAAAAGAATGATAAAGATAATAA
66 TGACAATTATGTACACATAAGGTCATTAAATAAGATTTTTCATAAAAGAATGATAAAGATAATAA
55921 AAAATATAAGTATGAGAGATATTTAAGAAAAATAAAAACTTAGCATAAACATGAAATCAAGGTGG
131 AAAATATAAGTATGAGAGATATTTAAGAAAAATAAAAACTTAGCATAAACATGAAATCAAGGTGG
55986 ATTCATAAGACCAAGTTCTCTTCTAATGGTGCAAAATCTACTTTTGTCAAGTGGTTTACTGAAAA
196 ATTCATAAGACCAAGTTCTCTTCTAATGGTGCAAAATCTACTTTTGTCAAGTGGTTTACTGAAAA
56051 TATCGGCTAGTTGGTGCAAGGTATCTACAAATTCTATTACAACATCCCTTTTTTGCACATGATCT
261 TATCGGCTAGTTGGTGCAAGGTATCTACAAATTCTATTACAACATCCCTTTTTTGCACATGATCT
56116 CTAATGAAGTGATGTCTAATTTCAATGTGCTTAGTCCTAGAATGTTGTACCAGATTTTTAGTAAG
326 CTAATGAAGTGATGTCTAATTTCAATGTGCTTAGTCCTAGAATGTTGTACCAGATTTTTAGTAAG
56181 ACATA
391 ACATA
56186 TTGCACTAGC
Statistics
Matches: 389, Mismatches: 5, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
401 379 0.97
402 10 0.03
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (402 bp):
AAGATCACAAAGTTTAACCAAATAAAACACCAAAAGTGCAACATTTCATTTCAAGTGACCGAAGA
TGACAATTATGTACACATAAGGTCATTAAATAAGATTTTTCATAAAAGAATGATAAAGATAATAA
AAAATATAAGTATGAGAGATATTTAAGAAAAATAAAAACTTAGCATAAACATGAAATCAAGGTGG
ATTCATAAGACCAAGTTCTCTTCTAATGGTGCAAAATCTACTTTTGTCAAGTGGTTTACTGAAAA
TATCGGCTAGTTGGTGCAAGGTATCTACAAATTCTATTACAACATCCCTTTTTTGCACATGATCT
CTAATGAAGTGATGTCTAATTTCAATGTGCTTAGTCCTAGAATGTTGTACCAGATTTTTAGTAAG
ACATAATTAAAA
Found at i:65088 original size:15 final size:15
Alignment explanation
Indices: 65068--65098 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65058 AAAAGATAAA
*
65068 AATGACATGTCTATT
1 AATGACATGTCCATT
65083 AATGACATGTCCATT
1 AATGACATGTCCATT
65098 A
1 A
65099 TCCTTGCTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (15 bp):
AATGACATGTCCATT
Found at i:65849 original size:30 final size:30
Alignment explanation
Indices: 65815--65873 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
65805 GTACTCAGTC
* *
65815 AAGTCTTTCT-TCACTTGACTATATTCGATT
1 AAGTCTTT-TATCACTGGACTATACTCGATT
65845 AAGTCTTTTATCACTGGACTATACTCGAT
1 AAGTCTTTTATCACTGGACTATACTCGAT
65874 CAAATTTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (30 bp):
AAGTCTTTTATCACTGGACTATACTCGATT
Found at i:66182 original size:40 final size:41
Alignment explanation
Indices: 66008--66196 Score: 122
Period size: 44 Copynumber: 4.4 Consensus size: 41
65998 GATTTTTCCT
66008 TGGTC-AACTCTTTTATTCATTTAATGTGATAGTTTTGCCC
1 TGGTCAAACTCTTTTATTCATTTAATGTGATAGTTTTGCCC
* * * * **
66048 TGGTCAAACTCATTTTATTTCGGTCTAACGT-AT-GGTTACCACC
1 TGGTCAAACTC-TTTTA-TTC-ATTTAATGTGATAGTTTTGC-CC
* * *
66091 TTGGTCAAATCCCTTTTCA-TCA-TTAGT-TGACTTTATCGATTTTGCCT
1 -TGGTCAAA-CTCTTTT-ATTCATTTAATGTGA---TA--G-TTTTGCCC
66138 TGGTC-AACTCTTTTATTCATTTAATGTGATAGTTTTGCCC
1 TGGTCAAACTCTTTTATTCATTTAATGTGATAGTTTTGCCC
66178 TGGTCAAACTCATTTTATT
1 TGGTCAAACTC-TTTTATT
66197 TCGGTCTAAC
Statistics
Matches: 110, Mismatches: 18, Indels: 40
0.65 0.11 0.24
Matches are distributed among these distances:
40 18 0.16
41 14 0.13
42 16 0.15
43 12 0.11
44 28 0.25
45 9 0.08
46 8 0.07
47 2 0.02
48 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (41 bp):
TGGTCAAACTCTTTTATTCATTTAATGTGATAGTTTTGCCC
Found at i:66185 original size:130 final size:130
Alignment explanation
Indices: 65952--66227 Score: 543
Period size: 130 Copynumber: 2.1 Consensus size: 130
65942 GATTGTATCA
*
65952 GTTACCACCTTGGTCAAATCCCTTTTCATCATTAGTTGACTTTATCGATTTTTCCTTGGTCAACT
1 GTTACCACCTTGGTCAAATCCCTTTTCATCATTAGTTGACTTTATCGATTTTGCCTTGGTCAACT
66017 CTTTTATTCATTTAATGTGATAGTTTTGCCCTGGTCAAACTCATTTTATTTCGGTCTAACGTATG
66 CTTTTATTCATTTAATGTGATAGTTTTGCCCTGGTCAAACTCATTTTATTTCGGTCTAACGTATG
66082 GTTACCACCTTGGTCAAATCCCTTTTCATCATTAGTTGACTTTATCGATTTTGCCTTGGTCAACT
1 GTTACCACCTTGGTCAAATCCCTTTTCATCATTAGTTGACTTTATCGATTTTGCCTTGGTCAACT
66147 CTTTTATTCATTTAATGTGATAGTTTTGCCCTGGTCAAACTCATTTTATTTCGGTCTAACGTATG
66 CTTTTATTCATTTAATGTGATAGTTTTGCCCTGGTCAAACTCATTTTATTTCGGTCTAACGTATG
66212 GTTACCACCTTGGTCA
1 GTTACCACCTTGGTCA
66228 GATTCTTTTC
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 145 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (130 bp):
GTTACCACCTTGGTCAAATCCCTTTTCATCATTAGTTGACTTTATCGATTTTGCCTTGGTCAACT
CTTTTATTCATTTAATGTGATAGTTTTGCCCTGGTCAAACTCATTTTATTTCGGTCTAACGTATG
Found at i:66452 original size:133 final size:132
Alignment explanation
Indices: 66203--66502 Score: 372
Period size: 133 Copynumber: 2.3 Consensus size: 132
66193 TATTTCGGTC
* * * *
66203 TAACGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTAATTTGATGCATGGTTACCACCCTA
1 TAACCTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTAATTTGATGCATAGTTACCACCATA
* *
66268 GTCAAATCTACCTCTTTCCAGTTTGGCGTATGCTTACCACCCTTGTGAAACTCCTTCTCATTTTG
66 GTCAAATCTACCTCCTTCCAGTTTGACGTATGCTTACCACCCTTGTGAAACT-CTTCTCATTTTG
* *
66333 GTT
130 ATA
* * * *
66336 TAATGC-ATGGTTACCACCCTGGTCAGATTTTTTTCATTCTAATTTGACT-TATAGTTACCATCA
1 TAA-CCTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTAATTTGA-TGCATAGTTACCACCA
* ** * *
66399 TGGTCAAATCTACCTCCTTCTTGTTTGACGTATGGTTACCA-CCTTGGTTAAACTCTTCTCATTT
64 TAGTCAAATCTACCTCCTTCCAGTTTGACGTATGCTTACCACCCTT-GTGAAACTCTTCTCATTT
66463 TGATA
128 TGATA
* *
66468 TGACCTATGGTTACCACCCTAGTCAGATTCTTTTC
1 TAACCTATGGTTACCACCCTGGTCAGATTCTTTTC
66503 GCATGGTTAC
Statistics
Matches: 142, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
131 1 0.01
132 46 0.32
133 94 0.66
134 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (132 bp):
TAACCTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTAATTTGATGCATAGTTACCACCATA
GTCAAATCTACCTCCTTCCAGTTTGACGTATGCTTACCACCCTTGTGAAACTCTTCTCATTTTGA
TA
Found at i:66680 original size:44 final size:44
Alignment explanation
Indices: 66565--66696 Score: 149
Period size: 44 Copynumber: 3.0 Consensus size: 44
66555 ACCAACCTGG
* *
66565 TCAAACTCTTGCTCATTTCGGTTTGACGTACGGTTACCACCCTAG
1 TCAAACTCTT-CTCATTTCAGTTTGACGTACGGTTACCACCCTAA
* * * *
66610 TTAAA-TCTACCTCATTCCCGTTTGACGTACGGTTACCACCCTAA
1 TCAAACTCT-TCTCATTTCAGTTTGACGTACGGTTACCACCCTAA
* * * *
66654 TCAAACTCTTCTTATTTTAGTCTGACGTATGGTTACCACCCTA
1 TCAAACTCTTCTCATTTCAGTTTGACGTACGGTTACCACCCTA
66697 GTCAGATTCT
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
44 65 0.90
45 7 0.10
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.35
Consensus pattern (44 bp):
TCAAACTCTTCTCATTTCAGTTTGACGTACGGTTACCACCCTAA
Found at i:66763 original size:75 final size:75
Alignment explanation
Indices: 66640--66808 Score: 232
Period size: 75 Copynumber: 2.3 Consensus size: 75
66630 TTTGACGTAC
* * * * * *
66640 GGTTACCACCCTAATCAAACTCTTCTTATTTTAGTCTGACGTATGGTTACCACCCTAGTCAGATT
1 GGTTACCACCCTAGTCAAACTCTTCTCATTTCAATCTGACATATGGTTACCACCCTAGTCAAATT
*
66705 CTTTTT-GTAT
66 -TTTTTCGCAT
* * *
66715 GGTTACCACCCTAGTCAAACTTTTCTCATTTCAATCTGACATATGGTTACCACTCTGGTCAAATT
1 GGTTACCACCCTAGTCAAACTCTTCTCATTTCAATCTGACATATGGTTACCACCCTAGTCAAATT
66780 TTTTTCGCAT
66 TTTTTCGCAT
66790 GGTTACCACCCTAGTCAAA
1 GGTTACCACCCTAGTCAAA
66809 TCAGCCTCTT
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
74 5 0.06
75 78 0.94
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.37
Consensus pattern (75 bp):
GGTTACCACCCTAGTCAAACTCTTCTCATTTCAATCTGACATATGGTTACCACCCTAGTCAAATT
TTTTTCGCAT
Found at i:67278 original size:85 final size:83
Alignment explanation
Indices: 67188--67424 Score: 235
Period size: 83 Copynumber: 2.8 Consensus size: 83
67178 AGTCCTTACC
* * *
67188 AAACTCTTTTACCTTTTTTTGACTTATCGATTCAGCCTTAGTCAAGCTTCTATTCCCTTGTTTAC
1 AAACTCCTTTACCTTTTATTGACTTATCGGTTCAGCCTTAGTCAA-CTT-TATTCCCTTGTTTAC
* *
67253 CTATCAGCTCAATCCCTCGT
64 CTATCAGCTCAATACCTAGT
* * * **
67273 GAACTCCTTTA-CTCTTTATTGACTTATCGGTTTAGCCTTGGTCAACTTT-TTATCTATGTTTAC
1 AAACTCCTTTACCT-TTTATTGACTTATCGGTTCAGCCTTAGTCAACTTTATTCCCT-TGTTTAC
* * *
67336 TTGTCAGCTCAATACGTAGT
64 CTATCAGCTCAATACCTAGT
* * * * * * *
67356 AAACTCCCTTACCCTTTGTTGACTTATTGGTTCAGCCCTAGTTAACCTTTAATCCCTTGTTTACC
1 AAACTCCTTTACCTTTTATTGACTTATCGGTTCAGCCTTAGTCAA-CTTTATTCCCTTGTTTACC
67421 TATC
65 TATC
67425 GGTCTCGAGT
Statistics
Matches: 120, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
82 4 0.03
83 57 0.47
84 20 0.17
85 39 0.32
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (83 bp):
AAACTCCTTTACCTTTTATTGACTTATCGGTTCAGCCTTAGTCAACTTTATTCCCTTGTTTACCT
ATCAGCTCAATACCTAGT
Found at i:68691 original size:165 final size:164
Alignment explanation
Indices: 68509--69037 Score: 599
Period size: 165 Copynumber: 3.2 Consensus size: 164
68499 CATTGACCCA
* * *
68509 AAATTTTT-GAATTCATCAAATATTATTATTTTATTCATATTAAATCAATTTTTAAAAATTCATT
1 AAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTTAAAAAATTCATT
*
68573 CATTTTCATTCATTTTTCATTTTTTTC-TTGAATTTTCATATTTTTGAAAAATAGAGTTTTCTAC
66 CATTTTCATTCATTTTTC-TTTTTTTCTTTGAATTTTC-TATTTTCGAAAAATAGAGTTTTCTAC
* * * **
68637 TTCGTAAATGTTTTTGGGGGGATTTTTCTTCATTTT
129 TCCATAAATGTTTTCGGGGGGATTTTTCTTGGTTTT
* * * *
68673 TAATTTTTAAAATTCATCAAATAATATTACTTAATTCATATTAAAT-TATTTTAAAAAAATTCAT
1 AAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTT-AAAAAATTCAT
* * *
68737 TCATTTTCATTCA-TTTTCTATTTTTTCTTTGAAATTCTTCGATTTTCGAAAAATGAAAATTTT-
65 TCATTTTCATTCATTTTTCT-TTTTTTCTTTG-AATT-TTCTATTTTCGAAAAAT-AGAGTTTTC
* *
68800 TTCTCCAAAAATGTTTTCGGGGGGATTTTTCTTGGTTTT
126 TACTCCATAAATGTTTTCGGGGGGATTTTTCTTGGTTTT
* * * *
68839 CAA-TTTTACAATTCATCAAATATTATTATATAATTCATATTAAATCAGTTTTAAAAAATTCATT
1 AAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTTAAAAAATTCATT
* * * *
68903 TATTTTCA-TGAGTTTTTCTTTTTTTCTTTGAAATCCCTT-TATTTTCAAAAAAGTAG-GTTTTC
66 CATTTTCATTCA-TTTTTCTTTTTTTCTTTG-AAT--TTTCTATTTTCGAAAAA-TAGAGTTTTC
* * *
68965 TACTCCATAAATGTTTTCAGGGGGATTTTTCTTGGTGTA
126 TACTCCATAAATGTTTTCGGGGGGATTTTTCTTGGTTTT
* * *
69004 AAATTTTTAAAATTCATCTAATATTGTCATTTAA
1 AAATTTTTAAAATTCATCAAATATTATTATTTAA
69038 CTCTCATTAA
Statistics
Matches: 307, Mismatches: 43, Indels: 28
0.81 0.11 0.07
Matches are distributed among these distances:
163 1 0.00
164 30 0.10
165 179 0.58
166 88 0.29
167 9 0.03
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (164 bp):
AAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAATTTTAAAAAATTCATT
CATTTTCATTCATTTTTCTTTTTTTCTTTGAATTTTCTATTTTCGAAAAATAGAGTTTTCTACTC
CATAAATGTTTTCGGGGGGATTTTTCTTGGTTTT
Found at i:74961 original size:20 final size:20
Alignment explanation
Indices: 74928--74968 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74918 AAAGGTCAAA
*
74928 ACCTTGAAAAGTATCGATAC
1 ACCTTCAAAAGTATCGATAC
*
74948 ACCTTCAAATGTATCGATAC
1 ACCTTCAAAAGTATCGATAC
74968 A
1 A
74969 GATTGCACAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (20 bp):
ACCTTCAAAAGTATCGATAC
Found at i:74996 original size:13 final size:13
Alignment explanation
Indices: 74978--75002 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74968 AGATTGCACA
74978 GTATCGATACATT
1 GTATCGATACATT
74991 GTATCGATACAT
1 GTATCGATACAT
75003 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:75015 original size:20 final size:21
Alignment explanation
Indices: 74990--75042 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
74980 ATCGATACAT
*
74990 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
75010 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
75031 TGTATCGATACA
1 TGTATCGATACA
75043 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:75110 original size:13 final size:13
Alignment explanation
Indices: 75092--75117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75082 ACACACAAGA
75092 TGTATCGATACAT
1 TGTATCGATACAT
75105 TGTATCGATACAT
1 TGTATCGATACAT
75118 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:75113 original size:32 final size:33
Alignment explanation
Indices: 75072--75139 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
75062 CCTTAACTGT
*
75072 TTGTATCGATACA-CACAAGATGTATCGATACA
1 TTGTATCGATACATCACAAAATGTATCGATACA
* *
75104 TTGTATCGATACATCCCAAAATGTATCGATATA
1 TTGTATCGATACATCACAAAATGTATCGATACA
75137 TTG
1 TTG
75140 GCTTGTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATGTATCGATACA
Found at i:77311 original size:14 final size:14
Alignment explanation
Indices: 77292--77329 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
77282 TTAAGGAAGA
77292 AAAAGAAACA-TTTG
1 AAAAGAAA-ATTTTG
77306 AAAAGAAAATTTTG
1 AAAAGAAAATTTTG
77320 AAAAGAAAAT
1 AAAAGAAAAT
77330 AAATGAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 1 0.04
14 22 0.96
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.21
Consensus pattern (14 bp):
AAAAGAAAATTTTG
Found at i:78310 original size:23 final size:25
Alignment explanation
Indices: 78275--78320 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
78265 AATAAAAATT
78275 AGCCATCAA-TTTTGACAAACAACA
1 AGCCATCAATTTTTGACAAACAACA
78299 AGCCAT-AATTTTTGACAAACAA
1 AGCCATCAATTTTTGACAAACAA
78321 AAAAGGATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.24
Consensus pattern (25 bp):
AGCCATCAATTTTTGACAAACAACA
Found at i:78352 original size:27 final size:27
Alignment explanation
Indices: 78306--78378 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
78296 ACAAGCCATA
* * *
78306 ATTTTTGACAAACAAAAAAGGATCCACC
1 ATTTTTGACAAA-TACAAAGGAACCACC
*
78334 ATTTTTGACAAATACAAAGTAACCACC
1 ATTTTTGACAAATACAAAGGAACCACC
78361 ATTTTTGACAAATACAAA
1 ATTTTTGACAAATACAAA
78379 TGGCAGCTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 29 0.71
28 12 0.29
ACGTcount: A:0.47, C:0.19, G:0.08, T:0.26
Consensus pattern (27 bp):
ATTTTTGACAAATACAAAGGAACCACC
Found at i:81136 original size:13 final size:13
Alignment explanation
Indices: 81118--81143 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81108 CAATTTTTTG
81118 TGTATCGATACAT
1 TGTATCGATACAT
81131 TGTATCGATACAT
1 TGTATCGATACAT
81144 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:81208 original size:21 final size:21
Alignment explanation
Indices: 81182--81257 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
81172 CTGCCAAGAA
81182 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
81203 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
81223 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
81244 ATGTATCGATACAT
1 ATGTATCGATACAT
81258 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:81227 original size:20 final size:20
Alignment explanation
Indices: 81202--81275 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
81192 ACATCTTTTT
81202 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
81222 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
81243 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
81263 CATGTATCGATAC
1 CATGTATCGATAC
81276 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:81239 original size:41 final size:41
Alignment explanation
Indices: 81182--81275 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
81172 CTGCCAAGAA
81182 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
81223 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
81264 ATGTATCGATAC
1 ATGTATCGATAC
81276 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:83744 original size:13 final size:13
Alignment explanation
Indices: 83726--83764 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
83716 ATAATCACCC
*
83726 TGTATCGATACAG
1 TGTATCGATACAA
83739 TGTATCGATACAA
1 TGTATCGATACAA
83752 TGTATCGATACAA
1 TGTATCGATACAA
83765 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:83775 original size:20 final size:20
Alignment explanation
Indices: 83750--83828 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
83740 GTATCGATAC
83750 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
83770 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
83795 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
83815 CATGTATCGATACA
1 AATGTATCGATACA
83829 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:87706 original size:21 final size:21
Alignment explanation
Indices: 87677--87721 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
87667 AAGTTTTCAT
*
87677 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
87697 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
87719 TTT
1 TTT
87722 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:89953 original size:13 final size:13
Alignment explanation
Indices: 89935--89960 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
89925 CAATTTTTTG
89935 TGTATCGATACAT
1 TGTATCGATACAT
89948 TGTATCGATACAT
1 TGTATCGATACAT
89961 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:90025 original size:21 final size:21
Alignment explanation
Indices: 89999--90074 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
89989 CTGCCAAGAA
89999 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
90020 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
90040 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
*
90061 ATGTATTGATACAT
1 ATGTATCGATACAT
90075 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:90044 original size:20 final size:20
Alignment explanation
Indices: 90019--90092 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
90009 ACATCTTTTT
90019 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
90039 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
*
90060 CATGTATTGATACATTGCAA
1 CATGTATCGATACATTGCAA
90080 CATGTATCGATAC
1 CATGTATCGATAC
90093 TTTGAATTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 28 0.65
21 15 0.35
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:90056 original size:41 final size:41
Alignment explanation
Indices: 89999--90092 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
89989 CTGCCAAGAA
89999 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
90040 ATGTATCGATACATCTTTTTCATGTATTGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
90081 ATGTATCGATAC
1 ATGTATCGATAC
90093 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:91185 original size:6 final size:6
Alignment explanation
Indices: 91163--91208 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
91153 TAATAAGTAA
* *
91163 AAATTC AAAATTC AAATTT AAATTC AAATTT AAATTC AAATTC AAA
1 AAATTC -AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAA
91209 AAATAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (6 bp):
AAATTC
Found at i:91414 original size:26 final size:26
Alignment explanation
Indices: 91309--91410 Score: 188
Period size: 26 Copynumber: 4.0 Consensus size: 26
91299 TGAAAACTTA
91309 CAGCATGGGAAAGGAAATAGAAAATG
1 CAGCATGGGAAAGGAAATAGAAAATG
91335 CAGCATGGGAAAGGAAATAGAAAATG
1 CAGCATGGGAAAGGAAATAGAAAATG
*
91361 CAGCATGGGAAAGGAAATAAAAAATG
1 CAGCATGGGAAAGGAAATAGAAAATG
91387 CAGCATGGGAAAGGAAATA-AAAAT
1 CAGCATGGGAAAGGAAATAGAAAAT
91411 TGCAATTGGA
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
25 5 0.07
26 70 0.93
ACGTcount: A:0.52, C:0.08, G:0.28, T:0.12
Consensus pattern (26 bp):
CAGCATGGGAAAGGAAATAGAAAATG
Found at i:91743 original size:43 final size:43
Alignment explanation
Indices: 91682--91817 Score: 193
Period size: 43 Copynumber: 3.2 Consensus size: 43
91672 GAAGAATAAG
* * * *
91682 CAGCAGCACCAACTCCAGCGGCGGC-GACAGCTCTAGCACGCAA
1 CAGCAGCAACAACTCCAGCAGCGACTG-CAGCTCCAGCACGCAA
* *
91725 CAGCAGCAGCAACTCCAGCAGCGACTGCAGTTCCAGCACGCAA
1 CAGCAGCAACAACTCCAGCAGCGACTGCAGCTCCAGCACGCAA
*
91768 CAGCAGCAACAACTCCAGCAACGACTGCAGCTCCAGCACGCAA
1 CAGCAGCAACAACTCCAGCAGCGACTGCAGCTCCAGCACGCAA
91811 CAGCAGC
1 CAGCAGC
91818 TCCAGCGAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 83 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.39, G:0.23, T:0.07
Consensus pattern (43 bp):
CAGCAGCAACAACTCCAGCAGCGACTGCAGCTCCAGCACGCAA
Found at i:92822 original size:51 final size:51
Alignment explanation
Indices: 92767--93431 Score: 271
Period size: 51 Copynumber: 12.7 Consensus size: 51
92757 CAATTGCTCA
92767 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTT
* * *
92818 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTT--TT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCCTT
* * * * * ***** * * * **
92868 CACAATCGAGGATACTTCAACCTCGTTATTTCATCGGGGATACTCCAA--CCCCG
1 --TAATCGGGGATACTCCAACCCCGGT-TTT-ATTTTCAAAACACCAATTTCCTT
* * * * *** *
92921 TAACCTCCGAGGGGATACTCCAACCCCGGCTTTACTTCCAAAATATTGATTT-CTCA
1 TAA--T-C--GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCT-T
* * *
92977 TAATGGGGGATACTCCAACCCCGGTTTTA-TTTCTGAAACACTAATTT--TT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCCTT
** * *
93026 CATAATCACGGATACTCTAACCCCGGTTTTATTTTTCAAAACATCGAATTTCCTT
1 --TAATCGGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACA-CCAATTTCCTT
* * *
93081 TAATCGGGGATACTCTAACTCCGATTTTATTTTCAAAAACACCAATTT--TT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCCTT
* * * * ***** * * ** *
93131 CACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAA-CCCCGT
1 --TAATCGGGGATACTCCAACCCCGGT-TTT-ATTTTCAAAACACCAATTTCCTT
* * * * * ** *** *
93185 TACCTCCGAGGGGATACCCCAACCCTGGCTTTATTTCCAAAGTATTGATTT-CTCA
1 TA-AT-C--GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCT-T
* ** * * *
93240 TAATTGGGGATACTTTAACCCCGGTTTTA-TTTCTAAAAGACTAATTTTCC-A
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAA-TTTCCTT
* * *
93291 TAATTGGGGATACTCTAACCCCGGTTTTATTTTTTAAAACACCAAATTTCCTT
1 TAATCGGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACACC-AATTTCCTT
* * *
93344 TAATCGGGGATACTCC-ATCCCAGTTTTATTTTTAAAACACCAATTTCCTT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTT
* * *
93394 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAA
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAA
93432 ACACAAATAG
Statistics
Matches: 444, Mismatches: 126, Indels: 88
0.67 0.19 0.13
Matches are distributed among these distances:
50 36 0.08
51 172 0.39
52 92 0.21
53 83 0.19
54 18 0.04
55 11 0.02
56 32 0.07
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTT
Found at i:93233 original size:263 final size:261
Alignment explanation
Indices: 92764--93389 Score: 979
Period size: 263 Copynumber: 2.4 Consensus size: 261
92754 TCTCAATTGC
* *
92764 TCATAATCGGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACACCAATTTCCTTTAATCGGGGA
1 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACAAATTTCCTTTAATCGGGGA
* *
92828 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTTCAACCTCG
66 TACT-CAACTCCGATTTTATTTTCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCG
*
92893 TTATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACTCCAACCCCGGCTTTACTT
130 TTATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACCCCAACCCCGGCTTTACTT
*
92958 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGGTTTTATTTCTGAAACACTAATT
195 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATT
93023 TT
260 TT
** *
93025 TCATAATCACGGATACTCTAACCCCGGTTTTATTTTTCAAAACATCGAATTTCCTTTAATCGGGG
1 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACA-CAAATTTCCTTTAATCGGGG
93090 ATACTCTAACTCCGATTTTATTTTCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTC
65 ATACTC-AACTCCGATTTTATTTTCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTC
* * *
93155 GTTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCTGGCTTTATT
129 GTTATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACCCCAACCCCGGCTTTACT
* * ** *
93220 TCCAAAGTATTGATTTCTCATAATTGGGGATACTTTAACCCCGGTTTTATTTCTAAAAGACTAAT
194 TCCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAAT
93285 TTT
259 TTT
* * *
93288 CCATAATTGGGGATACTCTAACCCCGGTTTTATTTTTTAAAACACCAAATTTCCTTTAATCGGGG
1 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACA-CAAATTTCCTTTAATCGGGG
* * *
93353 ATACTCCA-TCCCAGTTTTATTTT-TAAAACACCAATTT
65 ATACTCAACTCCGA-TTTTATTTTCAAAAACACCAATTT
93390 CCTTTAATCG
Statistics
Matches: 335, Mismatches: 26, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
261 46 0.14
262 22 0.07
263 267 0.80
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (261 bp):
TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACAAATTTCCTTTAATCGGGGA
TACTCAACTCCGATTTTATTTTCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGT
TATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACCCCAACCCCGGCTTTACTTC
CAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTT
T
Found at i:93394 original size:50 final size:50
Alignment explanation
Indices: 93257--93410 Score: 184
Period size: 50 Copynumber: 3.0 Consensus size: 50
93247 GGATACTTTA
* * * * * * *
93257 ACCCCGGTTTTATTTCTAAAAGACTAATTTTCC-ATAATTGGGGATACTCTA
1 ACCCCAGTTTTATTTTTAAAACACCAA-TTTCCTTTAATCGGGGATACTC-C
*
93308 ACCCCGGTTTTATTTTTTAAAACACCAAATTTCCTTTAATCGGGGATACTCC
1 ACCCCAGTTTTA-TTTTTAAAACACC-AATTTCCTTTAATCGGGGATACTCC
*
93360 ATCCCAGTTTTATTTTTAAAACACCAATTTCCTTTAATCGGGGATACTCC
1 ACCCCAGTTTTATTTTTAAAACACCAATTTCCTTTAATCGGGGATACTCC
93410 A
1 A
93411 ACTCCGATTT
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
50 26 0.28
51 25 0.27
52 25 0.27
53 16 0.17
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (50 bp):
ACCCCAGTTTTATTTTTAAAACACCAATTTCCTTTAATCGGGGATACTCC
Found at i:104938 original size:11 final size:10
Alignment explanation
Indices: 104918--104968 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
104908 CCTTCTCTTC
104918 TAAAAAAAAA
1 TAAAAAAAAA
*
104928 TCAACAAAAAA
1 T-AAAAAAAAA
104939 TAAAAAAAAA
1 TAAAAAAAAA
* *
104949 TGAAAAAAGA
1 TAAAAAAAAA
*
104959 CAAAAAAAAA
1 TAAAAAAAAA
104969 AGAACCTACT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
10 24 0.73
11 9 0.27
ACGTcount: A:0.82, C:0.06, G:0.04, T:0.08
Consensus pattern (10 bp):
TAAAAAAAAA
Found at i:104969 original size:21 final size:21
Alignment explanation
Indices: 104918--104968 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
104908 CCTTCTCTTC
104918 TAAAAAAAAATCAACAAAAAA
1 TAAAAAAAAATCAACAAAAAA
* *
104939 TAAAAAAAAATGAA-AAAAGA
1 TAAAAAAAAATCAACAAAAAA
*
104959 CAAAAAAAAA
1 TAAAAAAAAA
104969 AGAACCTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.82, C:0.06, G:0.04, T:0.08
Consensus pattern (21 bp):
TAAAAAAAAATCAACAAAAAA
Found at i:106179 original size:189 final size:188
Alignment explanation
Indices: 105933--106608 Score: 1149
Period size: 189 Copynumber: 3.6 Consensus size: 188
105923 CTACTTTCCT
105933 AGTCCTCAAAGAG--GGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
* *
105996 AAAGCCCACACAGGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
66 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
*
106061 TTTACTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTATC
131 TTTACTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106119 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCTTCAAAGAGCAGGACGCCTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC-TTTACTCCTCAAAGAGCAGGACGCCTTT
* *
106184 TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGTAGGACGCTCTCTCCTTTCACC
65 TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACC
* * * *
106249 CTTTACTCCTCAAAGAGCAGGACGTCTTTCAAATCCCACACGAGTTGGTGGCACTTTTC
130 CTTTACTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106308 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCCTTACTCCTCAAAGAGCAGGACGCCTTTC
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
106373 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
66 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
* *
106438 TTTTAGTCATCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
131 -TTTACTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106497 AGTCCTCAAAGAACAGGACACTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
* *
106562 AAAGCCCACACAAGTTGGTGGCACTCTCCAGTCCTCAAAGAGCAGGA
66 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
106609 TGCCTTTTCT
Statistics
Matches: 457, Mismatches: 29, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
186 13 0.03
188 109 0.24
189 335 0.73
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (188 bp):
AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
TTTACTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:106314 original size:283 final size:281
Alignment explanation
Indices: 105933--106608 Score: 1183
Period size: 283 Copynumber: 2.4 Consensus size: 281
105923 CTACTTTCCT
*
105933 AGTCCTCAAAGAG-GGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTTA
1 AGTCCTCAAAAAGAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTTA
* *
105997 AAGCCCACACAGGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCT
66 AAGCCCACACA-GTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCC
*
106062 TTACTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTATCAGTCCTCA
130 TTACTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTATCAGTCCTCA
*
106127 AAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCTTCAAAGAGCAGGACGCCTTTTAAAGCCC
195 AAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCATCAAAGAGCAGGACGCCTTTTAAAGCCC
106192 ACACAAGTTGGTGGCACTTTTC
260 ACACAAGTTGGTGGCACTTTTC
* *
106214 AGTCCTCAAAAAGTAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGTCTTTC
1 AGTCCTCAAAAAG-AGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
*
106279 AAATCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
65 AAAGCCCACAC-AGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC
*
106344 CTTACTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTC
129 CTTACTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTATCAGTCCTC
106409 AAAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCATCAAAGAGCAGGACGCCTTTTAAAGCC
194 AAAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCATCAAAGAGCAGGACGCCTTTTAAAGCC
106474 CACACAAGTTGGTGGCACTTTTC
259 CACACAAGTTGGTGGCACTTTTC
* *
106497 AGTCCTCAAAGAACAGGACACTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAA-AAGAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
* *
106562 AAAGCCCACACAAGTTGGTGGCACTCTCCAGTCCTCAAAGAGCAGGA
65 AAAGCCCACAC-AGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
106609 TGCCTTTTCT
Statistics
Matches: 374, Mismatches: 17, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
281 12 0.03
283 359 0.96
284 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (281 bp):
AGTCCTCAAAAAGAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTTA
AAGCCCACACAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCCT
TACTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTATCAGTCCTCAA
AGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCATCAAAGAGCAGGACGCCTTTTAAAGCCCA
CACAAGTTGGTGGCACTTTTC
Found at i:106623 original size:94 final size:94
Alignment explanation
Indices: 105933--106608 Score: 1149
Period size: 94 Copynumber: 7.2 Consensus size: 94
105923 CTACTTTCCT
105933 AGTCCTCAAAGAG--GGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
* *
105996 AAAGCCCACACAGGTTGGTGGCACTTTTT
66 AAAGCCCACACAAGTTGGTGGCACTTTTC
106025 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
*
106090 AAAGCCCACACAAGTTGGTGGCACTTATC
66 AAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106119 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCTTCAAAGAGCAGGACGCCTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC-TTTACTCCTCAAAGAGCAGGACGCCTTT
106184 TAAAGCCCACACAAGTTGGTGGCACTTTTC
65 TAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * *
106214 AGTCCTCAAAAAGTAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGTCTTTC
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
* *
106279 AAATCCCACACGAGTTGGTGGCACTTTTC
66 AAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106308 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCCTTACTCCTCAAAGAGCAGGACGCCTTTC
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
106373 AAAGCCCACACAAGTTGGTGGCACTTTTC
66 AAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106402 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTTAGTCATCAAAGAGCAGGACGCCTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCC-TTTACTCCTCAAAGAGCAGGACGCCTTT
106467 TAAAGCCCACACAAGTTGGTGGCACTTTTC
65 TAAAGCCCACACAAGTTGGTGGCACTTTTC
* *
106497 AGTCCTCAAAGAACAGGACACTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
* *
106562 AAAGCCCACACAAGTTGGTGGCACTCTCC
66 AAAGCCCACACAAGTTGGTGGCACTTTTC
106591 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
106609 TGCCTTTTCT
Statistics
Matches: 549, Mismatches: 31, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
92 13 0.02
94 359 0.65
95 177 0.32
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (94 bp):
AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTACTCCTCAAAGAGCAGGACGCCTTTT
AAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:106703 original size:45 final size:42
Alignment explanation
Indices: 106653--106756 Score: 120
Period size: 45 Copynumber: 2.4 Consensus size: 42
106643 GCACTTTTCA
*
106653 GTCCTCAAAGAGCAGGGCACAC-TTCTTTCCCTTCTTTTCTATTTT
1 GTCCTCAAAGAGCAGGACACACTTTCTTTCCC-T-TTTTC--TTTT
* * *
106698 GTCCTCAAAGAGCAGGACGCACTTTGTTTTCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTTCTTTCCCTTTTTCTTTT
*
106740 GTCCTTAAAGAGCAGGA
1 GTCCTCAAAGAGCAGGA
106757 AGTATTTTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
42 20 0.38
44 5 0.09
45 21 0.40
46 7 0.13
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACACACTTTCTTTCCCTTTTTCTTTT
Found at i:106766 original size:42 final size:43
Alignment explanation
Indices: 106653--106788 Score: 125
Period size: 42 Copynumber: 3.1 Consensus size: 43
106643 GCACTTTTCA
* * *
106653 GTCCTCAAAGAGCAGG--GCACACTTCTTTCCCTTCTTTTCTATTTT
1 GTCCTCAAAGAGCAGGAAGCAC-TTTGTTTCCC--CTTTT-TCTTTT
* *
106698 GTCCTCAAAGAGCAGGACGCACTTTGTTT-TCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGAAGCACTTTGTTTCCCCTTTTTCTTTT
* * * *
106740 GTCCTTAAAGAGCAGGAAGTATTTTGTTTCCCCTTTTTCCTTT
1 GTCCTCAAAGAGCAGGAAGCACTTTGTTTCCCCTTTTTCTTTT
*
106783 ATCCTC
1 GTCCTC
106789 GAAAAACGAG
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
42 30 0.39
43 20 0.26
45 17 0.22
46 5 0.07
47 4 0.05
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.42
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGAAGCACTTTGTTTCCCCTTTTTCTTTT
Found at i:107347 original size:6 final size:6
Alignment explanation
Indices: 107338--107364 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
107328 TAAAAATTAA
107338 AAATTC AAATTC AAATTC AAATTC AAA
1 AAATTC AAATTC AAATTC AAATTC AAA
107365 AAATAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATTC
Found at i:107553 original size:26 final size:25
Alignment explanation
Indices: 107474--107549 Score: 134
Period size: 26 Copynumber: 3.0 Consensus size: 25
107464 TGAAAACTTA
107474 CAGCATGGGAAAGGAAATAGAAAATG
1 CAGCATGGGAAAGGAAATA-AAAATG
107500 CAGCATGGGAAAGGAAATAAAAAATG
1 CAGCATGGGAAAGGAAAT-AAAAATG
107526 CAGCATGGGAAAGGAAATAAAAAT
1 CAGCATGGGAAAGGAAATAAAAAT
107550 TGCAATTGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
25 6 0.12
26 42 0.86
27 1 0.02
ACGTcount: A:0.53, C:0.08, G:0.28, T:0.12
Consensus pattern (25 bp):
CAGCATGGGAAAGGAAATAAAAATG
Found at i:107890 original size:18 final size:18
Alignment explanation
Indices: 107848--107949 Score: 98
Period size: 18 Copynumber: 5.6 Consensus size: 18
107838 CGGCGGCGAT
*
107848 AGCTCTAGCACGCAACAGC
1 AGCTCCAGCA-GCAACAGC
* *
107867 AGCTCCAACAGCAGCAGC
1 AGCTCCAGCAGCAACAGC
* * *
107885 AACTCCAGTAGCAACTGC
1 AGCTCCAGCAGCAACAGC
107903 AGCTCCAGCACGCAACAGC
1 AGCTCCAGCA-GCAACAGC
*
107922 AGCTCCAGCGAG-AGCAGC
1 AGCTCCAGC-AGCAACAGC
*
107940 AACTCCAGCA
1 AGCTCCAGCA
107950 AGTAGCAATT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
17 1 0.01
18 41 0.60
19 25 0.37
20 1 0.01
ACGTcount: A:0.32, C:0.37, G:0.22, T:0.09
Consensus pattern (18 bp):
AGCTCCAGCAGCAACAGC
Found at i:109102 original size:51 final size:51
Alignment explanation
Indices: 109036--110113 Score: 433
Period size: 51 Copynumber: 20.6 Consensus size: 51
109026 TAACCTCCGA
* * * * * *
109036 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGA-TTTCTCATAATG
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTC-CATAATC
*
109087 GGGGATACTCTAACCCCAGTTTTATTTCTAAAACACTAATTTTCCATAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATC
* * * *
109138 GGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTCC-ATAATC
* * * * * * ** *
109191 AGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTAACAATC
1 GGGGATACTCTAACCCCGGTTTTATTT-CTAAAACACTAATTTTCCATAATC
* * * * ***** * * * * * * *
109243 GAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACC-T-CTGA
1 GGGGATACTCTAACCCCGGT-TTT-ATTTCTAAAACACTAA----TTTTCCATAAT-C
* * * * * * * *
109299 GGGGATACCCCAACCCCGGCTTTATTTCCAAAATATTGA-TTTCTCATAATT
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTC-CATAATC
* * *
109350 GGGGATACTCCAACCCCAGTTTTATTTCTAAAATACTAATTTTCCATAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATC
* * * * *
109401 GGGGATACTCTAACCCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTCC-ATAATC
* * * *
109454 GAGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAA-TTTCCTTTAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTCC-ATAATC
** * * * * * ** *
109505 AAGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTTACAATC
1 GGGGATACTCTAACCCCGGTTTTATTT-CTAAAACACTAATTTTCCATAATC
* * ** * ***** * * * ** * *
109557 GAGGATACTCCAACCTTGTTATTTCATCGGGGATACTCCAA--CCCCGTTACCTCC
1 GGGGATACTCTAACCCCGGT-TTT-ATTTCTAAAACACTAATTTTCC-ATA-AT-C
* * * * * * * * *
109611 GAGGGAATACCCCAACCCCAGCTTTATTTCCAAAATATTGA-TTTCTCATAATT
1 G-GGG-ATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTC-CATAATC
* *
109664 GGGGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTTTCCATAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATC
* * * *
109715 GGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTCC-ATAATC
* *
109768 GGGGATACTCTAACCCCGGTTTTATTT-TCAAAACACCAA-TTTCCTTTAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTCC-ATAATC
* * * * * * *
109819 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATC
1 GGGGATACTCTAACCCCGGTTTTATTT-CTAAAACACTAATTTTCCATAATC
* * * * * ***** * * ** * *
109871 GAGGATACTCCAATCTCGTTATTTCATCGGGGATACTCTAA--CCCCGTTACCTCC
1 GGGGATACTCTAACCCCGGT-TTT-ATTTCTAAAACACTAATTTTCC-ATA-AT-C
* * * * * *
109925 GAGGGGATACTCCAACCCCGGCTTTATTT-TCAAAATATTGA-TTTCTCATAATG
1 --GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTC-CATAATC
* *
109978 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAATTTTCCATAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATC
* * * * * *
110029 GGGGATACTTTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATC
1 GGGGATACTCTAACCCCGGTTTTATTTCT-AAAACACTAATTTTCC-ATAATC
*
110082 GGGGATACTCCAACCCCGGTTTTATTT-TAAAA
1 GGGGATACTCTAACCCCGGTTTTATTTCTAAAA
110114 AAACACCAAT
Statistics
Matches: 776, Mismatches: 202, Indels: 98
0.72 0.19 0.09
Matches are distributed among these distances:
49 3 0.00
50 1 0.00
51 333 0.43
52 180 0.23
53 170 0.22
54 27 0.03
55 18 0.02
56 42 0.05
57 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCTAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATC
Found at i:109214 original size:53 final size:51
Alignment explanation
Indices: 109074--109230 Score: 147
Period size: 53 Copynumber: 3.0 Consensus size: 51
109064 TAAAATATTG
** * * *
109074 ATTTCTCATAATGGGGGATACTCTAACCCCAGTTTTATTTCT-AAAACACTAA
1 ATTTC-CATAATCAGGGATACTCTAACCCGA-TTTTATTTTTCAAAACACCAA
* * *
109126 TTTTCCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAA
1 ATTTCCATAATCAGGGATACTCTAA-CCCGATTTTATTTTTCAAAACACCAA
* * *
109178 ATTTCCTTTAATCAGGGATACTCCAACTCCGATTTTA-TTTCCAAAAACACCAA
1 ATTTCC-ATAATCAGGGATACTCTAAC-CCGATTTTATTTTTC-AAAACACCAA
109231 TTTTTAACAA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
51 28 0.32
52 26 0.30
53 34 0.39
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (51 bp):
ATTTCCATAATCAGGGATACTCTAACCCGATTTTATTTTTCAAAACACCAA
Found at i:109302 original size:28 final size:28
Alignment explanation
Indices: 109245--109316 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
109235 TAACAATCGA
* ** *
109245 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACCTCATAGG
109273 GGATACTCCAACCCCGTTACCTC-TGAGG
1 GGATACTCCAACCCCGTTACCTCAT-AGG
*
109301 GGATACCCCAACCCCG
1 GGATACTCCAACCCCG
109317 GCTTTATTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.22, C:0.36, G:0.19, T:0.22
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACCTCATAGG
Found at i:109335 original size:263 final size:262
Alignment explanation
Indices: 108871--109495 Score: 1051
Period size: 263 Copynumber: 2.4 Consensus size: 262
108861 CTCAATTGCT
* *
108871 CATAATCGGGGATACTCCAACCTCGGTTTTA-TTTT-AAAACACC-AATTTCCTTTAATCGGGGA
1 CATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATC-GGGA
* * *
108933 TACTCCAACTCCAATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTTCAACCTCG
65 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTAACAATCGAGGATACTCCAACCTCG
*
108998 TTATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT
130 TTATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACCCCAACCCCGGCTTTATTT
* *
109063 CTAAAATATTGATTTCTCATAATGGGGGATACTCTAACCCCAGTTTTATTTCTAAAACACTAATT
195 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACTAATT
109128 TTC
260 TTC
109131 CATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCAGGGA
1 CATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATC-GGGA
109196 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTAACAATCGAGGATACTCCAACCTCG
65 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTAACAATCGAGGATACTCCAACCTCG
* *
109261 TTATTTCATCGGGGATACTCCAACCCCGTTACCTCTGAGGGGATACCCCAACCCCGGCTTTATTT
130 TTATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACCCCAACCCCGGCTTTATTT
* *
109326 CCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCAGTTTTATTTCTAAAATACTAATT
195 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACTAATT
109391 TTC
260 TTC
*
109394 CATAATCGGGGATACTCTAACCCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGAGGA
1 CATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCG-GGA
* * *
109459 TACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTT
65 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTT
109496 CCTTTAATCA
Statistics
Matches: 344, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
260 29 0.08
261 4 0.01
262 22 0.06
263 289 0.84
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (262 bp):
CATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTAACAATCGAGGATACTCCAACCTCGT
TATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACCCCAACCCCGGCTTTATTTC
CAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACTAATTT
TC
Found at i:109415 original size:314 final size:314
Alignment explanation
Indices: 109036--110123 Score: 1806
Period size: 314 Copynumber: 3.5 Consensus size: 314
109026 TAACCTCCGA
* * * * *
109036 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGA-TTTCTCATAATGGGGGATACTCTAA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTC-CATAATCGGGGATACTCTAA
* * * * *
109100 CCCCAGTTTTATTTCT-AAAACACTAATTTTCC-ATAATCGGGGATACTCTAACCCCGGTTTTAT
65 CCCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTA-
109163 TTTTCAAAACACCAAATTTCCTTTAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
129 TTTTCAAAACACC-AATTTCCTTTAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
109228 CAATTTTTAACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTAC
193 CAATTTTTAACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTAC
*
109293 CTCTGAGGGGATACCCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATT
258 CTCCGAGGGGATACCCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATT
* *
109350 GGGGATACTCCAACCCCAGTTTTATTTCTAAAATACTAATTTTCCATAATCGGGGATACTCTAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTCTAAC
*
109415 CCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGAGGATACTCCAACCCCGGTTTTATT
66 CCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTATT
*
109480 TTCAAAACACCAATTTCCTTTAATCAAGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAA
131 TTCAAAACACCAATTTCCTTTAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAA
* *
109545 TTTTTTACAATCGAGGATACTCCAACCTTGTTATTTCATCGGGGATACTCCAACCCCGTTACCTC
196 TTTTTAACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACCTC
* *
109610 CGAGGGAATACCCCAACCCCAGCTTTATTTCCAAAATATTGATTTCTCATAATT
261 CGAGGGGATACCCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATT
*
109664 GGGGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTCTAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTCTAAC
* *
109729 CCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCTAACCCCGGTTTTATT
66 CCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTATT
*
109794 TTCAAAACACCAATTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAA
131 TTCAAAACACCAATTTCCTTTAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAA
* * *
109859 TTTTTCACAATCGAGGATACTCCAATCTCGTTATTTCATCGGGGATACTCTAACCCCGTTACCTC
196 TTTTTAACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACCTC
* * *
109924 CGAGGGGATACTCCAACCCCGGCTTTATTTTCAAAATATTGATTTCTCATAATG
261 CGAGGGGATACCCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATT
* *
109978 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTTTAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTCTAAC
110043 CCC-GATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTAT
66 CCCAG-TTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTAT
*
110107 TTTAAAAAAACACCAAT
130 TTT--CAAAACACCAAT
110124 CTTTCACAAT
Statistics
Matches: 729, Mismatches: 39, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
313 1 0.00
314 659 0.90
315 31 0.04
316 38 0.05
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (314 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTCTAAC
CCCAGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTATT
TTCAAAACACCAATTTCCTTTAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAA
TTTTTAACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACCTC
CGAGGGGATACCCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATT
Found at i:110003 original size:577 final size:569
Alignment explanation
Indices: 108871--110258 Score: 1787
Period size: 577 Copynumber: 2.4 Consensus size: 569
108861 CTCAATTGCT
*
108871 CATAATCGGGGATACTCCAACCTCGGTTTTATTTT-AAAACACCAATTTCCTTTAATCGGGGATA
1 CATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTTAATCGGGGATA
* *
108935 CTCCAACTCCAATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTTCAACCTCGTT
66 CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGTT
* * *
109000 ATTTCATCGGGGATACTCCAACCCCGTAACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCT
131 ATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCCGGCTTTATTTCC
* *
109065 AAAATATTGATTTCTCATAATGGGGGATACTCTAACCCCAGTTTTATTTCTAAAACACTAATTTT
196 AAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACTAATTTT
109130 CCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCAGGG
261 CCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCAGGG
*
109195 ATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTAACAATCGAGGATACTCCAACCTC
326 ATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTT-ACAATCGAGGATACTCCAACCTC
** * * *
109260 GTTATTTCATCGGGGATACTCCAACCCCGTTACCTCTGAGGGGATACCCCAACCCCGGCTTTATT
390 GTTATTTCA-C-GAAAAACACCAA-CCCGTTACATCTGA-GGGATACCCCAACCCCGGC-TTATT
* *** ** *
109325 TCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCAGTTTTATTTCTAAAATACTAAT
450 TCCAAAATATTAACCCCTCATAAGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAATACTAAT
* *
109390 TTTCCATAATCGGGGATACTCTAACCCCAGTTTTATTTTTCAAAACACCAAATTTC
515 TTTCCATAATCGGGGATACTCCAACCCCAGTTTTATTTCT-AAAACACCAAATTTC
* * **
109446 CTTTAATCGAGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTTAATCAAGGAT
1 C-ATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTTAATCGGGGAT
* *
109511 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTTACAATCGAGGATACTCCAACCTTGT
65 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGT
* *
109576 TATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGAATACCCCAACCCCAGCTTTATTTC
130 TATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCCGGCTTTATTTC
* *
109641 CAAAATATTGATTTCTCATAATTGGGGATACTCCAACCTCGGTTTTATTTCTAAAACACTAATTT
195 CAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACTAATTT
*
109706 TCCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGG
260 TCCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCAGG
* * * * *
109771 GATACTCTAACCCCGGTTTTATTTTC-AAAACACCAATTTCCTT-TAATCGGGGATACTCCAA-C
325 GATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTT--TTACAATCGAGGATACTCCAACC
*** * * *
109833 TCCGATTTTATTTC-C-AAAAACACCAA-TTTTTCACAATC-GA-GGATACTCCAATCTC-G-TT
388 T-CG---TTATTTCACGAAAAACACCAACCCGTT-AC-ATCTGAGGGATACCCCAACCCCGGCTT
*** * ** *
109891 ATTTCATCGGGGATACTCTAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT-T
447 ATTTC--C-AAAATA-T-TAACCCC--T-CATAAGAGGGGATACTCCAACCCCAGCTTTATTTCT
* * * * *
109955 CAAAATATTGA-TTTCTCATAATGGGGGATACTCCAACCCC-GATTTTATTTCTAAAACACTAAT
504 -AAAATACTAATTTTC-CATAATCGGGGATACTCCAACCCCAG-TTTTATTTCTAAAACACCAAA
110018 TTTC
566 TTTC
** *
110022 CATAATCGGGGATACTTTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGA
1 CATAATCGGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACACC-AATTTCCTTTAATCGGGGA
* * ** * * *
110087 TACTCCAACCCCGGTTTTATTTTAAAAAAACACCAATCTTTCACAATCGAGGATATTCTAACCTC
64 TACTCCAACTCCGATTTTA-TTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTC
110152 GTTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCCGGCTTTATT
128 GTTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCCGGCTTTATT
* *
110217 TCCAGAATATTGATTTCTCATAATTGGGGATACTTCAACCCC
193 TCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCC
110259 GTTATTTTCG
Statistics
Matches: 711, Mismatches: 78, Indels: 45
0.85 0.09 0.05
Matches are distributed among these distances:
569 7 0.01
571 2 0.00
572 15 0.02
573 3 0.00
574 7 0.01
575 37 0.05
576 96 0.14
577 395 0.56
578 142 0.20
579 7 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (569 bp):
CATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGTT
ATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCCGGCTTTATTTCC
AAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACTAATTTT
CCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCAGGG
ATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTTACAATCGAGGATACTCCAACCTCG
TTATTTCACGAAAAACACCAACCCGTTACATCTGAGGGATACCCCAACCCCGGCTTATTTCCAAA
ATATTAACCCCTCATAAGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAATACTAATTTTCCA
TAATCGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACCAAATTTC
Found at i:110206 original size:264 final size:263
Alignment explanation
Indices: 109664--110259 Score: 867
Period size: 264 Copynumber: 2.3 Consensus size: 263
109654 TCTCATAATT
* * * * * *
109664 GGGGATACTCCAACCTCGGTTTTA-TTTCTAAAACACTAATTT-TCCATAATCGGGGATACTCTA
1 GGGGATACTCCAACCCCGGCTTTATTTTC-AAAATATTGATTTCT-CATAATCGGGGATACTCCA
* * * *
109727 ACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCTAACCCCGGTTTTA
64 ACCCCGATTTTATTTCTCAAAACACCAAATTTCCTATAATCGGGGATACTCTAACCCCGATTTTA
* **
109792 TTTTCAAAACACCAATTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACC
129 TTTTCAAAACACCAATTTCCTTTAATCGGGGATACTCCAACCCCGATTTTATTTAAAAAAACACC
* * *
109857 AATTTTTCACAATCGAGGATACTCCAATCTCGTTATTTCATCGGGGATACTCTAACCCCGTTACC
194 AATCTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACC
109922 TCCGA
259 TCCGA
*
109927 GGGGATACTCCAACCCCGGCTTTATTTTCAAAATATTGATTTCTCATAATGGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTTCAAAATATTGATTTCTCATAATCGGGGATACTCCAAC
* * *
109992 CCCGATTTTATTTCT-AAAACACTAATTTTCC-ATAATCGGGGATACTTTAACCCCGATTTTATT
66 CCCGATTTTATTTCTCAAAACACCAAATTTCCTATAATCGGGGATACTCTAACCCCGATTTTA-T
*
110055 TTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTATTTTAAAAAAACAC
130 TTTCAAAACACC-AATTTCCTTTAATCGGGGATACTCCAACCCCGATTTTA-TTTAAAAAAACAC
* *
110120 CAATCTTTCACAATCGAGGATATTCTAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTAC
193 CAATCTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTAC
110185 CTCCGA
258 CTCCGA
* * * * *
110191 GGGGATACCCCAACCCCGGCTTTATTTCCAGAATATTGATTTCTCATAATTGGGGATACTTCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTTCAAAATATTGATTTCTCATAATCGGGGATACTCCAAC
110256 CCCG
66 CCCG
110260 TTATTTTCGA
Statistics
Matches: 300, Mismatches: 28, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
261 27 0.09
262 27 0.09
263 100 0.33
264 146 0.49
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (263 bp):
GGGGATACTCCAACCCCGGCTTTATTTTCAAAATATTGATTTCTCATAATCGGGGATACTCCAAC
CCCGATTTTATTTCTCAAAACACCAAATTTCCTATAATCGGGGATACTCTAACCCCGATTTTATT
TTCAAAACACCAATTTCCTTTAATCGGGGATACTCCAACCCCGATTTTATTTAAAAAAACACCAA
TCTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACCTC
CGA
Found at i:110294 original size:79 final size:79
Alignment explanation
Indices: 110162--110366 Score: 241
Period size: 79 Copynumber: 2.6 Consensus size: 79
110152 GTTATTTCAT
** * * * *
110162 CGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACCCCAACCCCGGCTTTATTTCCAGAAT-A
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCC-CAATCA
* * *
110226 TTGATTTCTCATAAT
65 TCGATTTCTCACAAC
* * * * *
110241 TGGGGATACTTCAACCCCGTTATTTTCGAGGGGATACTCTAATCCCGATTTTATTTCCCAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCCAATCAT
*
110306 CGATTTTTCACAAC
66 CGATTTCTCACAAC
* *
110320 CGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCACCCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
110367 TTATTATCTC
Statistics
Matches: 104, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
78 3 0.03
79 101 0.97
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCCAATCAT
CGATTTCTCACAAC
Found at i:112425 original size:27 final size:26
Alignment explanation
Indices: 112378--112429 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
112368 ACTAAGAATG
* *
112378 CCATTTTTTCTCTCAATTTTGCCTTA
1 CCATTTTTCCTCACAATTTTGCCTTA
112404 CCATTTTCTCCTCACAATTTTGCCTT
1 CCATTTT-TCCTCACAATTTTGCCTT
112430 TGTTAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.15, C:0.31, G:0.04, T:0.50
Consensus pattern (26 bp):
CCATTTTTCCTCACAATTTTGCCTTA
Found at i:115297 original size:2 final size:2
Alignment explanation
Indices: 115286--115315 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
115276 TTTTCACATT
115286 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
115316 TGTAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:119807 original size:2 final size:2
Alignment explanation
Indices: 119800--119825 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
119790 AATTGATAAA
119800 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
119826 TAAAATGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120214 original size:21 final size:22
Alignment explanation
Indices: 120187--120236 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
120177 TAAATATGAA
120187 TATATTTA-ATTTTTTAAAA-AT
1 TATATTTATA-TTTTTAAAATAT
*
120208 TTTATTTATATTTTTAAAATAT
1 TATATTTATATTTTTAAAATAT
120230 TATATTT
1 TATATTT
120237 TATGTTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATATTTATATTTTTAAAATAT
Found at i:120729 original size:5 final size:5
Alignment explanation
Indices: 120708--120803 Score: 62
Period size: 5 Copynumber: 20.0 Consensus size: 5
120698 AATAATTTTA
* * *
120708 AATAT AAAAT AA-A- AATAT AATAT GAAATAT AATAT -TTTT AAT-T AATAT
1 AATAT AATAT AATAT AATAT AATAT --AATAT AATAT AATAT AATAT AATAT
* * *
120756 AAATAT AATAT AATA- AATAT TATAT -ATTT AATAT GAT-T AATAT AATAT
1 -AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
120804 TTTTAATATA
Statistics
Matches: 72, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
3 2 0.03
4 18 0.25
5 42 0.58
6 5 0.07
7 5 0.07
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (5 bp):
AATAT
Found at i:123393 original size:15 final size:16
Alignment explanation
Indices: 123375--123405 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
123365 ATTTATATAA
123375 TTAATATAA-AAATAT
1 TTAATATAATAAATAT
123390 TTAATATAATAAATAT
1 TTAATATAATAAATAT
123406 ATATTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAATATAATAAATAT
Found at i:123882 original size:30 final size:30
Alignment explanation
Indices: 123823--123884 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
123813 TTTTTTATTT
*
123823 TTTCCATAATAAAAATAAATAAATAAATAA
1 TTTCAATAATAAAAATAAATAAATAAATAA
*
123853 TTTCAATAA-AAAATATAAA-ATAATCAATAA
1 TTTCAATAATAAAA-ATAAATA-AATAAATAA
123883 TT
1 TT
123885 ATTATATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (30 bp):
TTTCAATAATAAAAATAAATAAATAAATAA
Found at i:124418 original size:24 final size:24
Alignment explanation
Indices: 124391--124443 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
124381 ATATATATTT
*
124391 ATATGATAAATATAAAAAAATTAA
1 ATATAATAAATATAAAAAAATTAA
* * *
124415 ATATAATAAGTATACATAAATTAA
1 ATATAATAAATATAAAAAAATTAA
124439 A-ATAA
1 ATATAA
124444 CCTAGTTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
ATATAATAAATATAAAAAAATTAA
Found at i:124519 original size:2 final size:2
Alignment explanation
Indices: 124512--124547 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
124502 TAAAAACTTA
124512 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124548 GACTCTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125442 original size:19 final size:21
Alignment explanation
Indices: 125415--125454 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
125405 ATTATTTTTT
*
125415 TATTTTTAAAA-ATA-ATTTA
1 TATTATTAAAATATATATTTA
125434 TATTATTAAAATATATATTTA
1 TATTATTAAAATATATATTTA
125455 ATTTAAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 3 0.17
21 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTATTAAAATATATATTTA
Found at i:125833 original size:34 final size:34
Alignment explanation
Indices: 125787--126005 Score: 264
Period size: 34 Copynumber: 6.5 Consensus size: 34
125777 ATAAAAACCA
*
125787 CCATTTAATCAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
125821 CCATTTAGTCAACAATGGTAAGCC-ACCAAATCAC
1 CCATTTAATCAACAATGGTAA-CCTACCAAATCTC
* *
125855 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
125889 CCATTTAATCAATAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * * *
125923 CCATTTAGTCAATAATGGCAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGG-TAACCTACCAAATCTC
* * * *
125957 CCATTTAATCAACAATAGTAAACTACTAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
125990 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
126006 TCTCCCACTT
Statistics
Matches: 161, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
33 20 0.12
34 136 0.84
35 5 0.03
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:125906 original size:68 final size:68
Alignment explanation
Indices: 125787--126005 Score: 296
Period size: 68 Copynumber: 3.2 Consensus size: 68
125777 ATAAAAACCA
* * *
125787 CCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGTAAGCCACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAAAT
125852 CAC
66 CAC
* * * *
125855 CCATTTAATCAACAATGGTAAGCTACCAAATTTCCCATTTAATCAATAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAAAT
*
125920 CTC
66 CAC
* * * * * * *
125923 CCATTTAGTCAATAATGGCAAACCACCAAATCACCCATTTAATCAACAATAGTAAACTACTAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAAAT
125988 CA-
66 CAC
125990 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
126006 TCTCCCACTT
Statistics
Matches: 130, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
67 14 0.11
68 116 0.89
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (68 bp):
CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAAAT
CAC
Found at i:125963 original size:102 final size:101
Alignment explanation
Indices: 125785--126005 Score: 336
Period size: 102 Copynumber: 2.2 Consensus size: 101
125775 TGATAAAAAC
* *
125785 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
* *
125850 ATCACCCATTTAATCAACAATGGTAAGCTACCAAATTT
66 ATCACCCATTTAATCAACAATAGTAAACTACCAAA--T
* * * *
125888 C-CCATTTAATCAATAATGGTAAGCTACCAAATCTCCCATTTAGTCAATAATGGCAAACCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
*
125952 ATCACCCATTTAATCAACAATAGTAAACTACTAAAT
66 ATCACCCATTTAATCAACAATAGTAAACTACCAAAT
125988 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
126006 TCTCCCACTT
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
100 2 0.02
101 15 0.14
102 89 0.83
103 1 0.01
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (101 bp):
CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
ATCACCCATTTAATCAACAATAGTAAACTACCAAAT
Found at i:130133 original size:19 final size:19
Alignment explanation
Indices: 130078--130133 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
130068 ACAGTAACCG
* *
130078 TATACTTGAATAGTACCCA
1 TATACGTGAATAGTACCTA
*
130097 TATACGTGAATAGTACCTG
1 TATACGTGAATAGTACCTA
*
130116 TATATGTGAATAGTACCT
1 TATACGTGAATAGTACCT
130134 CGACAACCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (19 bp):
TATACGTGAATAGTACCTA
Found at i:130514 original size:34 final size:34
Alignment explanation
Indices: 130440--130654 Score: 197
Period size: 34 Copynumber: 6.4 Consensus size: 34
130430 AAAAACTACT
**
130440 ATTTAATCAACAATGACAA-CCTACCAAA-T-CTCC
1 ATTTAATCAACAATGGTAAGCC-ACCAAATTAC-CC
130473 ATTTAATCAACAATGGTAAGCCACCAAATTACCC
1 ATTTAATCAACAATGGTAAGCCACCAAATTACCC
* * *
130507 ATTTAATCAACAATGGTAAGCTACCAAATTTCTC
1 ATTTAATCAACAATGGTAAGCCACCAAATTACCC
* * * *
130541 ATTTAATCAATAATGGTAAGCTATCAAATCT-CTC
1 ATTTAATCAACAATGGTAAGCCACCAAAT-TACCC
* * * * *
130575 ATTTAGTGAACAATGGCAAACCACCAAATCACCC
1 ATTTAATCAACAATGGTAAGCCACCAAATTACCC
*** * *
130609 ATTTAATCAACAATGGTAAATTACTAAATCA-CC
1 ATTTAATCAACAATGGTAAGCCACCAAATTACCC
130642 ATTTAATCAACAA
1 ATTTAATCAACAA
130655 AAATAATGTC
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
33 38 0.25
34 115 0.74
35 2 0.01
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.27
Consensus pattern (34 bp):
ATTTAATCAACAATGGTAAGCCACCAAATTACCC
Found at i:130569 original size:68 final size:66
Alignment explanation
Indices: 130440--130654 Score: 227
Period size: 68 Copynumber: 3.2 Consensus size: 66
130430 AAAAACTACT
* * *
130440 ATTTAATCAACAATGACAACCTACCAAATCTCCATTTAATCAACAATGGTAAGCCACCAAATTAC
1 ATTTAATCAACAATGGCAAACTACCAAATCTCCATTTAATCAACAATGGTAAGCTA-CAAATTAC
130505 CC
65 CC
* * * *
130507 ATTTAATCAACAATGGTAAGCTACCAAATTTCTCATTTAATCAATAATGGTAAGCTATCAAATCT
1 ATTTAATCAACAATGGCAAACTACCAAATCTC-CATTTAATCAACAATGGTAAGCTA-CAAAT-T
*
130572 -CTC
63 ACCC
* * * * ** *
130575 ATTTAGTGAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAATTACTAAATCA
1 ATTTAATCAACAATGGCAAACTACCAAATC-TCCATTTAATCAACAATGGTAAGCTAC-AAATTA
130640 -CC
64 CCC
130642 ATTTAATCAACAA
1 ATTTAATCAACAA
130655 AAATAATGTC
Statistics
Matches: 121, Mismatches: 22, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
67 41 0.34
68 78 0.64
69 2 0.02
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.27
Consensus pattern (66 bp):
ATTTAATCAACAATGGCAAACTACCAAATCTCCATTTAATCAACAATGGTAAGCTACAAATTACC
C
Found at i:130599 original size:102 final size:101
Alignment explanation
Indices: 130440--130654 Score: 279
Period size: 102 Copynumber: 2.1 Consensus size: 101
130430 AAAAACTACT
* * *
130440 ATTTAATCAACAATGACAACCTACCAAATCTCCATTTAATCAACAATGGTAAGCCACCAAATTAC
1 ATTTAATCAACAATGACAACCTACCAAATCTCCATTTAATCAACAATGGCAAACCACCAAATCAC
130505 CCATTTAATCAACAATGGTAAGCTACCAAATTTCTC
66 CCATTTAATCAACAATGGTAAGCTACCAAATTTCTC
* ** * * * *
130541 ATTTAATCAATAATGGTAAGCTATCAAATCTCTCATTTAGTGAACAATGGCAAACCACCAAATCA
1 ATTTAATCAACAATGACAACCTACCAAATCTC-CATTTAATCAACAATGGCAAACCACCAAATCA
** * **
130606 CCCATTTAATCAACAATGGTAAATTACTAAATCAC-C
65 CCCATTTAATCAACAATGGTAAGCTACCAAATTTCTC
130642 ATTTAATCAACAA
1 ATTTAATCAACAA
130655 AAATAATGTC
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
101 40 0.41
102 57 0.59
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.27
Consensus pattern (101 bp):
ATTTAATCAACAATGACAACCTACCAAATCTCCATTTAATCAACAATGGCAAACCACCAAATCAC
CCATTTAATCAACAATGGTAAGCTACCAAATTTCTC
Found at i:131728 original size:23 final size:24
Alignment explanation
Indices: 131701--131751 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
131691 AATATTTAAT
*
131701 TTATAAAATTGTATTAATAAT-TA
1 TTATAAAATTATATTAATAATGTA
*
131724 TTATATAATTATATTAATAATGTA
1 TTATAAAATTATATTAATAATGTA
131748 TTAT
1 TTAT
131752 TAATAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTATAAAATTATATTAATAATGTA
Found at i:131732 original size:14 final size:13
Alignment explanation
Indices: 131712--131757 Score: 62
Period size: 14 Copynumber: 3.7 Consensus size: 13
131702 TATAAAATTG
131712 TATTAATAATTAT
1 TATTAATAATTAT
131725 TA-T-ATAATTA-
1 TATTAATAATTAT
131735 TATTAATAATGTAT
1 TATTAATAAT-TAT
131749 TATTAATAA
1 TATTAATAA
131758 AAGTAATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.07
11 8 0.28
12 6 0.21
13 4 0.14
14 9 0.31
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TATTAATAATTAT
Done.