Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1988
Parameters: 2 7 7 80 10 50 1000
Length:  71818

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4574--4622
3
16.3
3
91
0
80
30
2
2
65
1.15
6225--6256
2
16.0
2
100
0
64
50
0
0
50
1.00
9991--10109
27
4.3
28
70
19
90
39
0
0
59
1.03
9985--10130
13
11.0
14
69
20
59
39
0
0
59
1.02
10075--10162
43
2.1
41
81
12
99
37
1
0
61
1.04
20650--20681
10
3.2
10
95
0
55
46
0
43
9
1.35
24483--25211
362
2.0
362
100
0
1458
34
18
26
21
1.96
28287--28327
15
2.7
16
77
11
50
60
2
0
36
1.10
37025--37060
18
1.9
19
88
5
56
61
0
0
38
0.96
37206--37250
23
1.9
24
82
13
58
68
0
2
28
1.01
40843--40892
3
17.0
3
95
4
93
34
0
0
66
0.92
40946--41016
4
19.0
4
82
8
71
76
0
19
4
0.96
40946--41016
11
6.3
12
75
14
71
76
0
19
4
0.96
40951--41021
22
3.1
22
80
8
79
78
0
16
4
0.90
41747--41787
16
2.6
16
84
0
55
65
0
2
31
1.05
42533--42581
19
2.7
18
87
3
71
83
4
12
0
0.77
42664--42705
14
2.9
15
79
13
52
33
0
0
66
0.92
43858--43897
4
10.8
4
84
10
50
77
0
22
0
0.77
43856--43910
9
5.9
9
77
8
56
80
0
20
0
0.72
43947--44011
24
2.5
25
80
9
69
36
3
0
60
1.13
44353--44382
2
15.0
2
100
0
60
50
0
0
50
1.00
52384--52420
2
18.5
2
94
0
65
45
0
51
2
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52620--52658
16
2.4
16
87
12
53
61
0
0
38
0.96
52654--52704
16
3.2
15
76
20
50
49
1
0
49
1.12
53448--53486
20
2.0
19
85
5
51
66
2
0
30
1.05
53445--53500
25
2.2
26
87
9
80
62
1
0
35
1.06
53438--53504
25
2.7
26
78
17
79
62
1
0
35
1.04
54228--54269
18
2.2
20
83
8
52
30
7
0
61
1.22
56856--56924
29
2.3
29
80
12
86
66
0
0
33
0.92
56853--56940
14
7.0
13
69
19
53
64
0
0
35
0.94
57932--57966
18
1.9
18
94
0
61
60
2
0
37
1.12
61217--61266
15
3.3
14
78
15
55
34
2
0
64
1.05
61499--61541
18
2.4
18
84
3
61
48
0
0
51
1.00
65398--65467
30
2.4
29
84
13
90
48
1
0
50
1.09
67750--67790
3
13.7
3
100
0
82
65
0
0
34
0.93

Tables:   1

The End!