Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1989
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39149
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
File 1 of 2
Found at i:99 original size:41 final size:42
Alignment explanation
Indices: 40--138 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
30 GCATCCTGCA
* * * * *
40 CTTTAAGGACAAGGAGAAA-TGGAAAACGAAA-TGCGTCCTGCT
1 CTTTGAGGACAA-AAGAAAGTGGAAAA-GAAAGTACGCCCTACT
* *
82 CTTTGAGGATAAAAGAAAGTGGAAAATAAAGTACGCCCTACT
1 CTTTGAGGACAAAAGAAAGTGGAAAAGAAAGTACGCCCTACT
124 CTTTGAGGACAAAAG
1 CTTTGAGGACAAAAG
139 GGAAAAGAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
41 8 0.17
42 39 0.83
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (42 bp):
CTTTGAGGACAAAAGAAAGTGGAAAAGAAAGTACGCCCTACT
Found at i:362 original size:59 final size:60
Alignment explanation
Indices: 207--417 Score: 230
Period size: 61 Copynumber: 3.5 Consensus size: 60
197 GCATCCTGGT
* *
207 CTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCGTCCTGC
1 CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGACGTCCTGC
** * * *
267 TCTTTGAGGACTAAAAGGTGAAACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTG-
1 -CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGACGTCCTGC
* * * * *
327 CTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGC-TTGAAAGAAAAAGATGCCCCGC
1 CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGACGTCCTGC
* ** *
386 TCTTTAAGGACTGGAAGGTGCCACCAATTCGT
1 -CTTTGAGGACTAAAAGGTGCCACCAACTCGT
418 CCCCATACCT
Statistics
Matches: 125, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
58 17 0.14
59 31 0.25
60 31 0.25
61 46 0.37
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (60 bp):
CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGACGTCCTGC
Found at i:801 original size:61 final size:62
Alignment explanation
Indices: 721--1036 Score: 315
Period size: 61 Copynumber: 5.2 Consensus size: 62
711 TGGAAAGCTT
* ** * *
721 TGCC-CCAATTTGTGTGGGCTTTGAAAAG-AAAAGGCGTCTTGCTCTTTGAGGAATGAAAGG
1 TGCCACCAATTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
*
781 TGCCACCAATTTGCGTGGGCTTTG-AAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
1 TGCCACCAATTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * * * * * * *
842 TGCCACCAACTCGTATGAGGGCTTTGAAAAG-AAAAGGCATCCGGCTCTTTTAGGACTAAAAGC
1 TGCCACCAA-T-TTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * ** *
905 TGCCACTAACTTGCCTGCGG--TT-AAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGG
1 TGCCACCAATTTGTGTG-GGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * * * * **
965 TGCCACCAACTCGTGTGGGCCTTG-AAAGAAAAAGATGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAATTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
1026 TGCCACCAATT
1 TGCCACCAATT
1037 CGTCCCCATA
Statistics
Matches: 208, Mismatches: 38, Indels: 19
0.78 0.14 0.07
Matches are distributed among these distances:
59 7 0.03
60 49 0.24
61 100 0.48
62 3 0.01
63 45 0.22
64 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (62 bp):
TGCCACCAATTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
Found at i:961 original size:123 final size:123
Alignment explanation
Indices: 736--978 Score: 353
Period size: 123 Copynumber: 2.0 Consensus size: 123
726 CAATTTGTGT
* ** * * * *
736 GGGCTTTGAAAAGAAAAGGCGTCTTGCTCTTTGAGGAATGAAAGGTGCCACCAATTTGCGTGGGC
1 GGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCTGGGC
* *
801 TTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGA
66 -TTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCGTATGA
* * *
860 GGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTTAGGACTAAAAGCTGCCACTAACTTGCCTGCGG
1 GGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCTG-GG
925 -TTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCGT
65 CTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCGT
979 GTGGGCCTTG
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
123 52 0.49
124 52 0.49
125 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (123 bp):
GGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCTGGGC
TTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCGTATGA
Found at i:1519 original size:40 final size:39
Alignment explanation
Indices: 1419--1519 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 39
1409 GTCCACTTTT
*
1419 TTGAGGACAAAGG-AAAAGAAATAAATAGGTCTCACTCC
1 TTGAGGACAAAGGAAAAAGAAAGAAATAGGTCTCACTCC
* *
1457 TTGAGGAACAAAGGAAAAAAGAAAGAAA-AGTGTC-CTGCTTC
1 TTGAGG-ACAAAGG-AAAAAGAAAGAAATAG-GTCTC-ACTCC
1498 TTGAGGACAAAGTGAAAAAGAA
1 TTGAGGACAAAG-GAAAAAGAA
1520 CACGTCCTGC
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
38 6 0.11
39 7 0.13
40 17 0.31
41 24 0.44
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.17
Consensus pattern (39 bp):
TTGAGGACAAAGGAAAAAGAAAGAAATAGGTCTCACTCC
Found at i:1857 original size:60 final size:58
Alignment explanation
Indices: 1767--1953 Score: 200
Period size: 62 Copynumber: 3.1 Consensus size: 58
1757 GAGGGAAGAG
* *
1767 GAAAAGGCATCCTGGTCTTTGAGGACTAAAAAAGTGCCACCACACTTGTGGGCTTTTGAAAA
1 GAAAAGGCGTCCT-GTCTTTGAGGACT-AAAAGGTGCCACCA-ACTTGTGGGC-TTTGAAAA
** * *
1829 GAAAAGGCGTCCTG-CTTTGAGGACTAAAAGGTGAAACTAACTTGCGTGGGCTTTAAAAA
1 GAAAAGGCGTCCTGTCTTTGAGGACTAAAAGGTGCCACCAACTT--GTGGGCTTTGAAAA
1888 GAAAAAGGACG-CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTG-AAA
1 G-AAAAGG-CGTCCTG-TCTTTGAGGACTAAAAGGTGCCACCAACT--TGTGGGCTTTGAAAA
1949 GAAAA
1 GAAAA
1954 AGATGCCCGC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
58 4 0.04
59 18 0.17
60 31 0.29
61 7 0.07
62 46 0.43
64 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (58 bp):
GAAAAGGCGTCCTGTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGGGCTTTGAAAA
Found at i:1940 original size:62 final size:59
Alignment explanation
Indices: 1777--1990 Score: 204
Period size: 60 Copynumber: 3.5 Consensus size: 59
1767 GAAAAGGCAT
* *
1777 CCTGGTCTTTGAGGACTAAAAAAGTGCCACCACACTTGTGGGCTTTTGAAAAG-AAAAGG-CG
1 CCTGCTCTTTGAGGACT-AAAAGGTGCCACCA-ACTTGTGGGC-TTT-AAAAGAAAAAGGACG
** *
1838 TCCTG--CTTTGAGGACTAAAAGGTGAAACTAACTTGCGTGGGCTTTAAAAAGAAAAAGGACG
1 -CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTT--GTGGGCTTT-AAAAGAAAAAGGACG
* *
1899 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAA-GATG
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACT--TGTGGGCTTTAAAAGAAAAAGGACG
* * **
1959 CCCGCTCTTTAAGGACTGGAAGGTGCCACCAA
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
1991 TTCGTCCCCA
Statistics
Matches: 130, Mismatches: 14, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
58 4 0.03
59 18 0.14
60 58 0.45
61 11 0.08
62 38 0.29
64 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (59 bp):
CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGGGCTTTAAAAGAAAAAGGACG
Found at i:2404 original size:61 final size:61
Alignment explanation
Indices: 2296--2607 Score: 335
Period size: 61 Copynumber: 5.1 Consensus size: 61
2286 TTGAAAGCTT
* * ** * *
2296 TGCC-CCAATTTGTGTGGGCTTTGAAAG-AAAAGGCGTCTTGCTCTTTGAGGAATGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* *
2355 TGCCACCAATTTGCGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACT-AAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * * * * * *
2415 TGCCACCAACTCGTGAGGGCTTTGAAA-AGAAAAGGCATCCGGCTCTTTTAGGACTAAAAGC
1 TGCCACCAACTTGTGTGGGCTTTGAAAGA-AAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* ** * * *
2476 TGCCACTAACTTGCCTGCGCGTTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGG
1 TGCCACCAACTTGTGTGGGC-TTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * * * **
2538 TGCCACCAACTCGTGTGGGCCTTGAAAGAAAAAGATGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
2599 TGCCACCAA
1 TGCCACCAA
2608 TTCGTCCCAT
Statistics
Matches: 208, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
59 5 0.02
60 72 0.35
61 83 0.40
62 47 0.23
63 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (61 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
Found at i:3096 original size:41 final size:40
Alignment explanation
Indices: 2997--3099 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2987 GTCCCACTTT
*
2997 TTGAGGACAAAGG-AAAAGAAAATGAAATAGGTCTCGCTCC
1 TTGAGGACAAAGGAAAAAGAAAAGGAAATA-GTCTCGCTCC
*
3037 TTGAGGACAAAGGAAAAAAGAAAAGGAAAGT-GTC-CTGCTTC
1 TTGAGGACAAAGG-AAAAAGAAAAGGAAA-TAGTCTC-GCTCC
3078 TTGAGGACAAAGTGAAAAAGAA
1 TTGAGGACAAAG-GAAAAAGAA
3100 CACGTCCTGC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 14 0.25
41 27 0.48
42 14 0.25
43 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.26, T:0.17
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAGAAAAGGAAATAGTCTCGCTCC
Found at i:3174 original size:45 final size:43
Alignment explanation
Indices: 3102--3339 Score: 173
Period size: 45 Copynumber: 5.5 Consensus size: 43
3092 AAAAAGAACA
** *
3102 CGTCCTGCT-TTTGAAAACAAAGAAAAAAAGGAAAATGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
* *
3144 TGTCTTGCTCTTTGAGGACTAGAAGGAAAAAAAGG-AAATGAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AAGG-AAAAAAGGAAAATGAA-ATG
* * * * * *
3189 CATCCTGCACTTTAAGGACAAAGGAGAAATGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
* * * *
3232 CGTCCTGCTCTTTGAGGATAAAAG-AAAGAGGAAAAT-AAAGTA
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAA-TG
* * * *
3274 CGCCCTACTCTTTGAGGACAAAAGGGAAAAGAAGG-AAATGAAGTA
1 CGTCCTGCTCTTTGAGGAC-AAA-GGAAAA-AAGGAAAATGAAATG
* *
3319 CGACTTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAGGACAA
3340 GAGGGAAGAG
Statistics
Matches: 151, Mismatches: 32, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
41 3 0.02
42 39 0.26
43 40 0.26
44 5 0.03
45 50 0.33
46 14 0.09
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
Found at i:3440 original size:60 final size:60
Alignment explanation
Indices: 3350--3576 Score: 260
Period size: 60 Copynumber: 3.8 Consensus size: 60
3340 GAGGGAAGAG
* * * *
3350 GAAAAGGCATCCTGGTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAA
* ** * * *
3411 GAAAAGGCGTCCTGCTC-TTGAGGACTAAAAGGTGAAACTAACTTGCGTGGGCTTT-AAA
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA
* *
3469 GAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTGGAAA
1 G-AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA
* * * ** *
3530 GAAAAGATGTCCCGCTCTTTAAGGACTGGAAGGTGCCACCAATTCGT
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
3577 CCCCATACCT
Statistics
Matches: 140, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
58 4 0.03
59 15 0.11
60 102 0.73
61 19 0.14
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (60 bp):
GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA
Found at i:3983 original size:61 final size:61
Alignment explanation
Indices: 3877--4190 Score: 303
Period size: 61 Copynumber: 5.1 Consensus size: 61
3867 TGGAAAGCTT
* * * ** * *
3877 TGCCCCCAATTTGTGTGGGCTTTGAAA-AGAAAAGGCGTCTTGCTCTTTGAGGAATGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGA-AAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* *
3938 TGCCACCAATTTGCGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
** * * * * * *
3999 TGCCACCAACTCATGAGGGCTTTGAAA-AGAAAAGGCATCCGGCTCTTTTAGGACTAAAAGC
1 TGCCACCAACTTGTGTGGGCTTTGAAAGA-AAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* ** * * * *
4060 TGCCACTAACTTGCCTGCGCGTTAAAAG-AAAAGACGTCCAAGCTCTTTGAGCACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCC-AGCTCTTTGAGGACTAAAAGG
* * * **
4121 TGCCACCAACTCGTGTGGGCCTTGAAAGAAAAAGATGTCCTA-CTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCC-AGCTCTTTGAGGACTAAAAGG
4182 TGCCACCAA
1 TGCCACCAA
4191 TTCGTCCCCA
Statistics
Matches: 204, Mismatches: 44, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
60 10 0.05
61 182 0.89
62 12 0.06
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (61 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
Found at i:4154 original size:122 final size:122
Alignment explanation
Indices: 3889--4152 Score: 352
Period size: 122 Copynumber: 2.2 Consensus size: 122
3879 CCCCCAATTT
* ** * * * *
3889 GTGTGGGCTTTGAAAAGAAAAGGCGTCTTGCTCTTTGAGGAATGAAAGGTGCCACCAATTTGCGT
1 GTGTGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCT
* * * *
3954 GGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTC
66 GCGCGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
* * * * *
4011 ATGAGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTTAGGACTAAAAGCTGCCACTAACTTGCCT
1 GTGTGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCT
4076 GCGCGTTAAAAG-AAAAGACGTCCAAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
66 GCGCGTTAAAAGAAAAAGACGTCC-AGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
*
4133 GTGTGGGCCTTG-AAAGAAAA
1 GTGTGGGCTTTGAAAAGAAAA
4153 AGATGTCCTA
Statistics
Matches: 122, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
121 19 0.16
122 103 0.84
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (122 bp):
GTGTGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCT
GCGCGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
Found at i:4186 original size:122 final size:122
Alignment explanation
Indices: 3893--4190 Score: 334
Period size: 122 Copynumber: 2.4 Consensus size: 122
3883 CAATTTGTGT
* * * * * * * *
3893 GGGCTTTGAAAAGAAAAGGCGTCTTG-CTCTTTGAGGAATGAAAGGTGCCACCAATTTGCGTGGG
1 GGGCCTTGAAAAGAAAAAGCATC-CGACTCTTTGAGGACTGAAAGGTGCCACCAACTTGCCTGCG
* * *
3957 CTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGA
65 CGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCATGA
* * * * * * *
4015 GGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTTAGGACTAAAAGCTGCCACTAACTTGCCTGCGC
1 GGGCCTTGAAAAGAAAAAGCATCCGACTCTTTGAGGACTGAAAGGTGCCACCAACTTGCCTGCGC
* *
4080 GTTAAAAG-AAAAGACGTCCAAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCGTGT
66 GTTAAAAGAAAAAGACGTCC-AGCTCTTTGAGCACTAAAAGGTGCCACCAACTCATGA
* *
4137 GGGCCTTG-AAAGAAAAAG-ATGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAA
1 GGGCCTTGAAAAGAAAAAGCA--TCCGACTCTTTGAGGACTGAAAGGTGCCACCAA
4191 TTCGTCCCCA
Statistics
Matches: 148, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
120 1 0.01
121 21 0.14
122 126 0.85
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (122 bp):
GGGCCTTGAAAAGAAAAAGCATCCGACTCTTTGAGGACTGAAAGGTGCCACCAACTTGCCTGCGC
GTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTCATGA
Found at i:4884 original size:42 final size:42
Alignment explanation
Indices: 4830--4941 Score: 109
Period size: 45 Copynumber: 2.6 Consensus size: 42
4820 CGTCCTGCTC
* *
4830 TTGAGGATAAAAGAAAGAGGAAAATAAAGTACGCCCTACTCT
1 TTGAGGACAAAAGAAAGAGGAAAATAAAGTACGACCTACTCT
* * *
4872 TTGAGGACAAAAGGGAAAAGAAGG-AAATGAAGTACGACTTGCTCT
1 TTGAGGACAAAA--G-AAAG-AGGAAAATAAAGTACGACCTACTCT
* *
4917 TTGAGGACAAGAGGGAAGAGGAAAA
1 TTGAGGACAA-AAGAAAGAGGAAAA
4942 GGCATCCTGG
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
42 14 0.25
43 6 0.11
44 2 0.04
45 31 0.54
46 4 0.07
ACGTcount: A:0.45, C:0.11, G:0.29, T:0.16
Consensus pattern (42 bp):
TTGAGGACAAAAGAAAGAGGAAAATAAAGTACGACCTACTCT
Found at i:4907 original size:45 final size:45
Alignment explanation
Indices: 4843--4941 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
4833 AGGATAAAAG
*
4843 AAAGAGGAAAATAAAGTACGCCCTACTCTTTGAGGACAAAAGGGA
1 AAAGAGGAAAATAAAGTACGACCTACTCTTTGAGGACAAAAGGGA
* * * *
4888 AAAGAAGG-AAATGAAGTACGACTTGCTCTTTGAGGACAAGAGGG-
1 AAAG-AGGAAAATAAAGTACGACCTACTCTTTGAGGACAAAAGGGA
4932 -AAGAGGAAAA
1 AAAGAGGAAAA
4942 GGCATCCTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.06
43 6 0.13
45 35 0.74
46 3 0.06
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.15
Consensus pattern (45 bp):
AAAGAGGAAAATAAAGTACGACCTACTCTTTGAGGACAAAAGGGA
Found at i:5153 original size:61 final size:61
Alignment explanation
Indices: 4946--5166 Score: 264
Period size: 61 Copynumber: 3.6 Consensus size: 61
4936 GGAAAAGGCA
* * *
4946 TCCTGGTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA-AGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGA-AAAAGACG
** * * * * *
5007 TCCTGCTCTTTGAGGACTAAAAGGTGAAACTAACTTGCGTGGGCTTTAAAAGAAAAGGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* * *
5068 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCCTTGAAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* * ** *
5129 TCCCGCTCTTTAAGGACTGGAAGGTGCCACCAATTCGT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
5167 CCCCATACCT
Statistics
Matches: 133, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
61 132 0.99
62 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
Found at i:5547 original size:61 final size:62
Alignment explanation
Indices: 5466--5779 Score: 334
Period size: 61 Copynumber: 5.1 Consensus size: 62
5456 TGGAAAGCTT
* * * ** * *
5466 TGCCCCCAATTTGTGTGGGCTTTGAAAAG-AAAAGGCGTCTTGCTCTTTGAGGAATGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* *
5527 TGCCACCAATTTGCGTGGGCTTTG-AAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * * * * * *
5588 TGCCACCAACTCGTGAGGGCTTTGAAAAG-AAAAGGCATCCGGCTCTTTTAGGACTAAAAGC
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* ** * * *
5649 TGCCACTAACTTGCCTGCGCGTT-AAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
* * * **
5710 TGCCACCAACTCGTGTGGGCCTTG-AAAGAAAAAGATGTCCTA-CTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGACGTCC-AGCTCTTTGAGGACTAAAAGG
5771 TGCCACCAA
1 TGCCACCAA
5780 TTCGTCCCCA
Statistics
Matches: 209, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
60 9 0.04
61 195 0.93
62 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (62 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGG
Found at i:5743 original size:122 final size:122
Alignment explanation
Indices: 5478--5741 Score: 377
Period size: 122 Copynumber: 2.2 Consensus size: 122
5468 CCCCCAATTT
* ** * * * *
5478 GTGTGGGCTTTGAAAAGAAAAGGCGTCTTGCTCTTTGAGGAATGAAAGGTGCCACCAATTTGCGT
1 GTGTGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCT
* * * *
5543 GGGCTTTGAAAGAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTC
66 GCGCGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
* * * *
5600 GTGAGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTTAGGACTAAAAGCTGCCACTAACTTGCCT
1 GTGTGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCT
5665 GCGCGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
66 GCGCGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
*
5722 GTGTGGGCCTTG-AAAGAAAA
1 GTGTGGGCTTTGAAAAGAAAA
5742 AGATGTCCTA
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
121 8 0.06
122 117 0.94
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (122 bp):
GTGTGGGCTTTGAAAAGAAAAGGCATCCGGCTCTTTGAGGAATAAAAGCTGCCACCAACTTGCCT
GCGCGTTAAAAGAAAAAGACGTCCAGCTCTTTGAGCACTAAAAGGTGCCACCAACTC
Found at i:6271 original size:41 final size:40
Alignment explanation
Indices: 6172--6274 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
6162 GTCCCACTTT
*
6172 TTGAGGACAAAGG-AAAAGAAAATGAAATAGGTCTCGCTCC
1 TTGAGGACAAAGGAAAAAGAAAAGGAAATA-GTCTCGCTCC
*
6212 TTGAGGACAAAGGAAAAAAGAAAAGGAAAGT-GTC-CTGCTTC
1 TTGAGGACAAAGG-AAAAAGAAAAGGAAA-TAGTCTC-GCTCC
6253 TTGAGGACAAAGTGAAAAAGAA
1 TTGAGGACAAAG-GAAAAAGAA
6275 CACGTCCTGC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 14 0.25
41 27 0.48
42 14 0.25
43 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.26, T:0.17
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAGAAAAGGAAATAGTCTCGCTCC
Found at i:6497 original size:45 final size:42
Alignment explanation
Indices: 6407--6531 Score: 117
Period size: 45 Copynumber: 2.9 Consensus size: 42
6397 GAAAACGAAA
* *
6407 TACGTCCTGCTCTTTGAGGATAAAAGAAAGAGGAAAATAAAG
1 TACGACCTACTCTTTGAGGATAAAAGAAAGAGGAAAATAAAG
* *
6449 TACGCCCTACTCTTTGAGGATAAAAAGGAAAAGAAGG-AAATGAAG
1 TACGACCTACTCTTTGAGGAT-AAAA-G-AAAG-AGGAAAATAAAG
* * * * *
6494 TACGACTTTCTCTTTGAGGACAAGAGGGAAGAGGAAAA
1 TACGACCTACTCTTTGAGGATAA-AAGAAAGAGGAAAA
6532 GGCATCCTGG
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
42 22 0.32
43 10 0.15
44 4 0.06
45 29 0.43
46 3 0.04
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.20
Consensus pattern (42 bp):
TACGACCTACTCTTTGAGGATAAAAGAAAGAGGAAAATAAAG
Found at i:6639 original size:61 final size:62
Alignment explanation
Indices: 6536--6756 Score: 286
Period size: 61 Copynumber: 3.6 Consensus size: 62
6526 GGAAAAGGCA
* * *
6536 TCCTGGTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
** * * *
6597 TCCTGCTCTTTGAGGACTAAAAGGTGAAACTAACTTGCGTGGGCTTT-AAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* *
6658 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTG-AAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * ** *
6719 TCCCGCTTTTTGAGGACTGGAAGGTGCCACCAATTCGT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
6757 CCCCACACCT
Statistics
Matches: 137, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
60 5 0.04
61 132 0.96
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (62 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
Found at i:7515 original size:45 final size:45
Alignment explanation
Indices: 7269--7571 Score: 242
Period size: 46 Copynumber: 6.9 Consensus size: 45
7259 TTCGAGGACA
* * * *
7269 AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTAAGGACTAGAAA-GG
1 AAAAGAAGG-AAATGAAGTGCGTCCTGCTCTTTGAGGAC-A-AAAGGG
* * **
7316 AAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGCTGACTAAAAGGG
1 AAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGAC-AAAAGGG
* * *
7362 AAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGA-TAAAGGAG
1 AAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGG-G
* * * * * *
7407 AAAAG--GAAAACGAAATGCGTCCTGCTTTTTGTGGACCAAA--G
1 AAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGG
* *
7448 -AAAG-AGGAAAATAAAATGCGTCCTGCTCTTTGAGGACAAAAGGG
1 AAAAGAAGG-AAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGG
*
7492 AAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGAC--AAGGG
1 AAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGG
*
7535 -GAAG-AGG-AA--AAG-GCGTCCTGCTCTTTGAGGACTAAAA
1 AAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGAC-AAAA
7572 AGTGCCACCA
Statistics
Matches: 214, Mismatches: 30, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
37 19 0.09
38 3 0.01
40 8 0.04
41 5 0.02
42 31 0.14
43 28 0.13
44 9 0.04
45 39 0.18
46 64 0.30
47 8 0.04
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (45 bp):
AAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAAGGG
Found at i:7620 original size:60 final size:62
Alignment explanation
Indices: 7542--7952 Score: 428
Period size: 61 Copynumber: 6.7 Consensus size: 62
7532 GGGGAAGAGG
* * *
7542 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAAC-CGTGTGGGCTTTGCAAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
* * ** * ***
7603 AAATGA-GTCTTGCTCTTTGAGGACTAAAAGGTAACACTAACTTACGTGGGCTTT-AAAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
* *
7663 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGTTTTGAAAA-A
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
* * * *
7724 AAAA-ACGTCTTGCTCTTTGAGGAATAAAAGATGCCACCAACTCGTGAGGGCTTTGAAAAG-
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
* * * * * ** * *
7784 AAAAGGCATCC-GACTCTTTTAGGACT-GAAGGCTGCCACCAACTTGCCTGCGCGTT-AAAAGA
1 AAAAGACGTCCTG-CTCTTTGAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGA
* * *
7845 AAAAGACGTCCTACTCTTTGAGCACTAAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
* ** *
7907 AAAAGATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGT
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
7953 CCCCATACCT
Statistics
Matches: 281, Mismatches: 57, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
60 102 0.36
61 126 0.45
62 50 0.18
63 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (62 bp):
AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
Found at i:7775 original size:121 final size:119
Alignment explanation
Indices: 7542--7947 Score: 396
Period size: 121 Copynumber: 3.3 Consensus size: 119
7532 GGGGAAGAGG
* *
7542 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAAC-CGTGTGGGCTTTGCAAAGAAAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC-TGTGGGCTTTG-AAA-AAAA
** * ** *
7606 TGA-GTCTTGCTCTTTGAGGACTAAAAGGTAACACTAACTTACGT-GGGCTTTAAAAGA
63 AAACGTCTTGCTCTTTGAGGACTAAAAGATGCCACCAAC-T-CGTGGGGCTTTAAAAGA
*
7663 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGTTTTGAAAAAAAAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC-TGTGGGCTTTGAAAAAAAAA
*
7728 ACGTCTTGCTCTTTGAGGAATAAAAGATGCCACCAACTCGTGAGGGCTTTGAAAAG-
65 ACGTCTTGCTCTTTGAGGACTAAAAGATGCCACCAACTCGTG-GGGCTTT-AAAAGA
* * * * * *
7784 AAAAGGCATCC-GACTCTTTTAGGACT-GAAGGCTGCCACCAACT-TGCCTGCGCGTT-AAAAGA
1 AAAAGACGTCCTG-CTCTTTGAGGACTAAAAGG-TGCCACCAACTCTG--TGGGCTTTGAAAA-A
* * * * *
7845 AAAAGACGTCCTACTCTTTGAGCACTAAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGA
61 AAAA-ACGTCTTGCTCTTTGAGGACTAAAAGA-TGCCACCAACTCGTG-GGGCTTTAAAAGA
* **
7907 AAAAGATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
7948 TTCGTCCCCA
Statistics
Matches: 241, Mismatches: 29, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
119 5 0.02
120 15 0.06
121 122 0.51
122 42 0.17
123 51 0.21
124 6 0.02
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (119 bp):
AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCTGTGGGCTTTGAAAAAAAAAA
CGTCTTGCTCTTTGAGGACTAAAAGATGCCACCAACTCGTGGGGCTTTAAAAGA
Found at i:7911 original size:123 final size:120
Alignment explanation
Indices: 7650--7947 Score: 320
Period size: 123 Copynumber: 2.5 Consensus size: 120
7640 TAACTTACGT
* **
7650 GGGCTTT-AAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATG--TG
1 GGGCTTTGAAAAG-AAAAGACATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACT--TGCCTG
* ** * * * *
7712 GGTTTTGAAAAAAAAAACGTCTTGCTCTTTGAGGAATAAAAGATGCCACCAACTCGTGA
63 CGCGTT-AAAAAAAAAACGTCCTACTCTTTGAGCAATAAAAAATGCCACCAACTCGTGA
* *
7771 GGGCTTTGAAAAGAAAAGGCATCC-GACTCTTTTAGGACT-GAAGGCTGCCACCAACTTGCCTGC
1 GGGCTTTGAAAAGAAAAGACATCCTG-CTCTTTGAGGACTGGAAGG-TGCCACCAACTTGCCTGC
* *
7834 GCGTTAAAAGAAAAAGACGTCCTACTCTTTGAGCACTAAAAAAGTGCCACCAACTCGTGT
64 GCGTTAAAA-AAAAA-ACGTCCTACTCTTTGAGCAATAAAAAA-TGCCACCAACTCGTGA
**
7894 GGGCTTTG-AAAGAAAAAGATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 GGGCTTTGAAAAG-AAAAGACATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
7948 TTCGTCCCCA
Statistics
Matches: 149, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
119 2 0.01
120 9 0.06
121 49 0.33
122 31 0.21
123 52 0.35
124 6 0.04
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (120 bp):
GGGCTTTGAAAAGAAAAGACATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGCCTGCGC
GTTAAAAAAAAAACGTCCTACTCTTTGAGCAATAAAAAATGCCACCAACTCGTGA
Found at i:8421 original size:40 final size:42
Alignment explanation
Indices: 8326--8439 Score: 121
Period size: 40 Copynumber: 2.8 Consensus size: 42
8316 AATGGAAGGG
* * *
8326 GTGTCCCACTTTTTGAGGACAAAGG-AAAAGAGAATGAAATA
1 GTGTCCTACTTCTTGAGGACAAAGGAAAAAGAGAAAGAAATA
* * *
8367 G-GT-CTCGCTCCTTGAGGACAAAGGAAAAAG-GAAAGGAA-A
1 GTGTCCT-ACTTCTTGAGGACAAAGGAAAAAGAGAAAGAAATA
8406 GTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAG
1 GTGTCCTACTTCTTGAGGACAAAG-GAAAAAGAG
8440 TACGTCCTGC
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
39 3 0.05
40 40 0.68
41 15 0.25
42 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.19
Consensus pattern (42 bp):
GTGTCCTACTTCTTGAGGACAAAGGAAAAAGAGAAAGAAATA
Found at i:8491 original size:43 final size:42
Alignment explanation
Indices: 8442--8716 Score: 240
Period size: 43 Copynumber: 6.4 Consensus size: 42
8432 AAAAAGAGTA
8442 CGTCCTGCT-TTTCGAGGACAAAGGAAAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAGGAAAAAAGGAAAA-GAAATG
* *
8485 TGTCCTGCTCTTTGAGGGCTAGAAGGGAAAAGAAGGAAAAGAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AA-GGAAAA-AAGGAAAAGAA-ATG
* *
8531 CGTCCTGCTATTTGAGGACAAAGGAGAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAA-GAAATG
* * * *
8574 CGTCTTGCTCTTTGAGGACAAAAG-AAAGAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAGAAA-TG
* * *
8616 CGTCCTGCTCTTTGAGGACAAAAGGGAAAGGAAGGAAATGAAGTG
1 CGTCCTGCTCTTTGAGGAC-AAA-GGAAA-AAAGGAAAAGAAATG
* * * ** *
8661 CATCCTGCTCTTTGAGGATAAGGGGGAATAGGAAAAG----G
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAGAAATG
8699 CGTCCTGCTCTTTGAGGA
1 CGTCCTGCTCTTTGAGGA
8717 TAAGGGGGAA
Statistics
Matches: 191, Mismatches: 28, Indels: 31
0.76 0.11 0.12
Matches are distributed among these distances:
38 18 0.09
41 3 0.02
42 45 0.24
43 49 0.26
44 9 0.05
45 24 0.13
46 34 0.18
47 9 0.05
ACGTcount: A:0.36, C:0.14, G:0.30, T:0.19
Consensus pattern (42 bp):
CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAGAAATG
Found at i:8548 original size:89 final size:84
Alignment explanation
Indices: 8442--8678 Score: 262
Period size: 89 Copynumber: 2.7 Consensus size: 84
8432 AAAAAGAGTA
* *
8442 CGTCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGGCTAG
1 CGTCCTGCTTTT-GAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAGGAC-A-
* *
8507 AAGGGAAAAGAAGGAAAA-GAAGAG
63 AA-AG-AAAG-AGGAAAATAAAGAG
* *
8531 CGTCCTGCTATTTGAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCTTGCTCTTTGAGGACAAA
1 CGTCCTGCT-TTTGAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAGGACAAA
*
8596 AGAAAGAGGAAAATAAAGTG
65 AGAAAGAGGAAAATAAAGAG
* * * *
8616 CGTCCTGCTCTTTGAGGACAAAAGGGAAAGGAAGG-AAATGAAGTGCATCCTGCTCTTTGAGGA
1 CGTCCTGCT-TTTGAGGAC-AAA-GGAAA-AAAGGAAAACGAAATGCGTCCTGCTCTTTGAGGA
8679 TAAGGGGGAA
Statistics
Matches: 129, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
84 7 0.05
85 26 0.20
86 4 0.03
87 30 0.23
88 5 0.04
89 54 0.42
90 3 0.02
ACGTcount: A:0.38, C:0.14, G:0.29, T:0.19
Consensus pattern (84 bp):
CGTCCTGCTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAGGACAAAA
GAAAGAGGAAAATAAAGAG
Found at i:8675 original size:45 final size:44
Alignment explanation
Indices: 8442--8678 Score: 238
Period size: 42 Copynumber: 5.4 Consensus size: 44
8432 AAAAAGAGTA
* * *
8442 CGTCCTGCT-TTTCGAGGAC-AAAGGAAAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAAGGAAAGAAGGAAAATGAAGTG
* * * *
8485 TGTCCTGCTCTTTGAGGGCTAGAAGGGAAAAGAAGGAAAA-GAAGAG
1 CGTCCTGCTCTTTGAGGAC-A-AAAGG-AAAGAAGGAAAATGAAGTG
* * *
8531 CGTCCTGCTATTTGAGGAC-AAAGGAGAA-AAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAAGGA-AAGAAGGAAAATGAAGTG
* *
8574 CGTCTTGCTCTTTGAGGACAAAA-GAAAG-AGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGGAAAGAAGGAAAATGAAGTG
8616 CGTCCTGCTCTTTGAGGACAAAAGGGAAAGGAAGG-AAATGAAGTG
1 CGTCCTGCTCTTTGAGGACAAAA-GGAAA-GAAGGAAAATGAAGTG
*
8661 CATCCTGCTCTTTGAGGA
1 CGTCCTGCTCTTTGAGGA
8679 TAAGGGGGAA
Statistics
Matches: 161, Mismatches: 20, Indels: 24
0.79 0.10 0.12
Matches are distributed among these distances:
42 44 0.27
43 42 0.26
44 10 0.06
45 27 0.17
46 27 0.17
47 11 0.07
ACGTcount: A:0.38, C:0.14, G:0.29, T:0.19
Consensus pattern (44 bp):
CGTCCTGCTCTTTGAGGACAAAAGGAAAGAAGGAAAATGAAGTG
Found at i:8688 original size:45 final size:44
Alignment explanation
Indices: 8486--8732 Score: 142
Period size: 45 Copynumber: 5.7 Consensus size: 44
8476 AACGAAATGT
* * * * *
8486 GTCCTGCTCTTTGAGGGCT-AGAAGGGAAAAGAAGGAAAAGAAGAGC
1 GTCCTGCTCTTTGA-GGATAAG-GGGGAAAGGAAGG-AAATAAGTGC
* * * * ** *
8532 GTCCTGCTATTTGAGGACAAAGGAGAAAAGGAA--AACGAAATGC
1 GTCCTGCTCTTTGAGGA-TAAGGGGGAAAGGAAGGAAATAAGTGC
* * **
8575 GTCTTGCTCTTTGAGGACAA--AAGAAA-G-AGGAAAATAAAGTGC
1 GTCCTGCTCTTTGAGGATAAGGGGGAAAGGAAGG-AAAT-AAGTGC
* **
8617 GTCCTGCTCTTTGAGGACAAAAGGGAAAGGAAGGAAATGAAGTGC
1 GTCCTGCTCTTTGAGGATAAGGGGGAAAGGAAGGAAAT-AAGTGC
* *
8662 ATCCTGCTCTTTGAGGATAAGGGGG-AA--TAGG-AA-AAG-GC
1 GTCCTGCTCTTTGAGGATAAGGGGGAAAGGAAGGAAATAAGTGC
8700 GTCCTGCTCTTTGAGGATAAGGGGGAATAGGAA
1 GTCCTGCTCTTTGAGGATAAGGGGGAA-AGGAA
8733 AGGAGTGCCA
Statistics
Matches: 158, Mismatches: 29, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
38 27 0.17
39 5 0.03
40 5 0.03
41 4 0.03
42 30 0.19
43 22 0.14
44 6 0.04
45 34 0.22
46 23 0.15
47 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (44 bp):
GTCCTGCTCTTTGAGGATAAGGGGGAAAGGAAGGAAATAAGTGC
Found at i:8832 original size:61 final size:61
Alignment explanation
Indices: 8737--8899 Score: 240
Period size: 61 Copynumber: 2.7 Consensus size: 61
8727 TAGGAAAGGA
*
8737 GTGCCACCAACTCGTGTGGGCTTTAAAA-AGAAAAGGCGTCCTACTCTTGGAGGACTGAAAG
1 GTGCCACCAACTCGTGTGGGCTTTAAAAGA-AAAAGGCGTCCTACTCTTGGAGGACTAAAAG
* * * *
8798 GTGCCACCAACTTGCGTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAG
1 GTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTGGAGGACTAAAAG
*
8859 GTGCCATCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCGTCC
1 GTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCGTCC
8900 GGCTGTTTCT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
61 86 0.93
62 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (61 bp):
GTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCGTCCTACTCTTGGAGGACTAAAAG
Found at i:9448 original size:43 final size:43
Alignment explanation
Indices: 9312--9535 Score: 199
Period size: 43 Copynumber: 5.1 Consensus size: 43
9302 CTTGCTTTTC
* *
9312 GAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTACTCTTT
1 GAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTACTCTTT
* * * * *
9355 GAGGATTAGAAGG-GAAAAGAAGGAAATGAAGA-GCATCCCACTCTTT
1 GAGGA-CA-AAGGAGAAAAG--GAAAACGAA-ATGCGTCCTACTCTTT
9401 GAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTACTCTTT
1 GAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTACTCTTT
** *
9444 GAGGACAAA--AG-AAAGAGAAAAATAAAGTGCGTCCTGCTCTTT
1 GAGGACAAAGGAGAAAAG-GAAAACGAAA-TGCGTCCTACTCTTT
* * * *
9486 GAGGACAAAAGG-GAAAAGGAGGAATGAAGTGCGTCCTGCTCTTT
1 GAGGAC-AAAGGAGAAAAGGA-AAACGAAATGCGTCCTACTCTTT
9530 GAGGAC
1 GAGGAC
9536 TAAAAAGTGC
Statistics
Matches: 148, Mismatches: 19, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
40 4 0.03
41 10 0.07
42 21 0.14
43 36 0.24
44 34 0.23
45 19 0.13
46 23 0.16
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.28, T:0.17
Consensus pattern (43 bp):
GAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTACTCTTT
Found at i:9528 original size:44 final size:44
Alignment explanation
Indices: 9312--9540 Score: 202
Period size: 44 Copynumber: 5.2 Consensus size: 44
9302 CTTGCTTTTC
* * * *
9312 GAGGAC-AAAGGAAAAAAGGA-AAACGAAATGTGTCCTACTCTTT
1 GAGGACAAAAGG-GAAAAGGAGAAATGAAGTGCGTCCTACTCTTT
* * * * * *
9355 GAGGATTAGAAGGGAAAAGAAGGAAATGAAGAGCATCCCACTCTTT
1 GAGGA-CAAAAGGGAAAAGGA-GAAATGAAGTGCGTCCTACTCTTT
* *
9401 GAGGAC-AAAGGAGAAAAGGA-AAACGAAATGCGTCCTACTCTTT
1 GAGGACAAAAGG-GAAAAGGAGAAATGAAGTGCGTCCTACTCTTT
* * *
9444 GAGGACAAAA--G-AAAGAGAAAAATAAAGTGCGTCCTGCTCTTT
1 GAGGACAAAAGGGAAAAG-GAGAAATGAAGTGCGTCCTACTCTTT
* *
9486 GAGGACAAAAGGGAAAAGGAGGAATGAAGTGCGTCCTGCTCTTT
1 GAGGACAAAAGGGAAAAGGAGAAATGAAGTGCGTCCTACTCTTT
9530 GAGGACTAAAA
1 GAGGAC-AAAA
9541 AGTGCCACCA
Statistics
Matches: 149, Mismatches: 25, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
40 4 0.03
41 3 0.02
42 29 0.19
43 29 0.19
44 43 0.29
45 19 0.13
46 22 0.15
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.17
Consensus pattern (44 bp):
GAGGACAAAAGGGAAAAGGAGAAATGAAGTGCGTCCTACTCTTT
Found at i:9624 original size:61 final size:60
Alignment explanation
Indices: 9516--9856 Score: 385
Period size: 61 Copynumber: 5.6 Consensus size: 60
9506 GGAATGAAGT
* *
9516 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGCGTGGGCTTT-AAAAGAAAAG
* * * * * *
9577 GCGTCTTGCTCTTTGAGGACTGAAAGGTGCCATCAGCTTGCGCGGGCTTTAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGCGTGGGCTTTAAAAG-AAAAG
* * *
9638 ACGTCCTGCTGTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGCGTGGGCTTT-AAAAGAAAAG
* * * * * *
9699 GCGTCCAGCTCTTTAAGGACTGAAAGCTGCCACCAACTTGCGTGGGCTTTAAATGAAATAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGCGTGGGCTTTAAAAGAAA-AG
* * * * ** *
9760 ACGTCCTGCTCTTTGAGGACTAAAAGGTGCTACCAACCCGAGTGGGCTTCGAAGGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGCGTGGGCTTTAAAAG-AAAAG
** * *
9821 ATGTCCTGCTCTTTGAGGACTAGAAGGTTCCACCAA
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
9857 TTTGTCCTCA
Statistics
Matches: 234, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
60 12 0.05
61 214 0.91
62 8 0.03
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGCGTGGGCTTTAAAAGAAAAG
Found at i:9838 original size:183 final size:183
Alignment explanation
Indices: 9516--9856 Score: 443
Period size: 183 Copynumber: 1.9 Consensus size: 183
9506 GGAATGAAGT
* * * *
9516 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGT
1 GCGTCCAGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGCGTGGGCTTTGAAAAGAAAAGACGT
* * * * ** * *
9581 CTTGCTCTTTGAGGACTGAAAGGTGCCATCAGCTTGCGCGGGCTTTAAAAGAAAAAGACGTCCTG
66 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACCCGAGCGGGCTTCAAAAGAAAAAGACGTCCTG
*
9646 CTGTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
131 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
* * *
9699 GCGTCCAGCTCTTTAAGGACT-GAAAGCTGCCACCAACTTGCGTGGGCTTT-AAATGAAATAGAC
1 GCGTCCAGCTCTTTAAGGACTAAAAAG-TGCCACCAACTCGCGTGGGCTTTGAAAAGAAA-AGAC
* * * * *
9762 GTCCTGCTCTTTGAGGACTAAAAGGTGCTACCAACCCGAGTGGGCTTCGAAGGAAAAAGATGTCC
64 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACCCGAGCGGGCTTCAAAAGAAAAAGACGTCC
* *
9827 TGCTCTTTGAGGACTAGAAGGTTCCACCAA
129 TGCTCTTTGAGGACTAAAAGGTGCCACCAA
9857 TTTGTCCTCA
Statistics
Matches: 133, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
182 11 0.08
183 122 0.92
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (183 bp):
GCGTCCAGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGCGTGGGCTTTGAAAAGAAAAGACGT
CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACCCGAGCGGGCTTCAAAAGAAAAAGACGTCCTG
CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
Found at i:9854 original size:122 final size:122
Alignment explanation
Indices: 9517--9856 Score: 477
Period size: 122 Copynumber: 2.8 Consensus size: 122
9507 GAATGAAGTG
*
9517 CGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTC
1 CGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTC
* * *
9582 TTGCTCTTTGAGGACTGAAAGGTGCCATCAGCTTGCGCGGGCTTTAAAAGAAAAAGA
66 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCGCGGGCTTTAAAAGAAAAAGA
*
9639 CGTCCTGCTGTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTC
1 CGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTC
* * * * * *
9704 CAGCTCTTTAAGGACTGAAAGCTGCCACCAACTTGCGTGGGCTTTAAATGAAATAGA
66 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCGCGGGCTTTAAAAGAAAAAGA
* * * * * **
9761 CGTCCTGCTCTTTGAGGACTAAAAGGTGCTACCAACCCGAGTGGGCTTCG-AAGGAAAAAGATGT
1 CGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCGT
*
9825 CCTGCTCTTTGAGGACT-AGAAGGTTCCACCAA
65 CCTGCTCTTTGAGGACTGA-AAGGTGCCACCAA
9857 TTTGTCCTCA
Statistics
Matches: 193, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
121 4 0.02
122 189 0.98
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (122 bp):
CGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTC
CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCGCGGGCTTTAAAAGAAAAAGA
Found at i:10332 original size:41 final size:42
Alignment explanation
Indices: 10235--10505 Score: 128
Period size: 43 Copynumber: 6.5 Consensus size: 42
10225 AATGGAAGGG
* * *
10235 GTGTCCCGCTTTTTGAGGACAAAGG-AAAAAAGAATGAAATA
1 GTGTCCTGCTTATTGAGGACAAAGGAAAAAAAGAAAGAAATA
** *
10276 G-GT-CTCGCTCCTTGAGGACAAAGGAAAAAAAGAAAGGAA-A
1 GTGTCCT-GCTTATTGAGGACAAAGGAAAAAAAGAAAGAAATA
*
10316 GTGTCCTGCTTATTGAGGACAAA-G---AGAA-AAAG-AATA
1 GTGTCCTGCTTATTGAGGACAAAGGAAAAAAAGAAAGAAATA
* * * *
10352 -CGTCCTACTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATA
1 GTGTCCTGCTTATTGAGGACAAAGGAAAAAAAG-AAA-GAAATA
* * *
10395 -TGTCATGCTCT-TTGAGGACTAGAAGGGAAAAGAAGGAAATG-AAGA
1 GTGTCCTGCT-TATTGAGGAC-A-AA-GGAAAA-AAAGAAA-GAAATA
* * * *
10440 GCGTCCTACTCT-TTGAGGACAAAGGAGAAAAGGAAAACGAAAT-
1 GTGTCCTGCT-TATTGAGGACAAAGGAAAAAAAG-AAA-GAAATA
10483 G-GATCCTGCTCT-TTGAGGACAAA
1 GTG-TCCTGCT-TATTGAGGACAAA
10506 AGAGGAAAAT
Statistics
Matches: 183, Mismatches: 25, Indels: 42
0.73 0.10 0.17
Matches are distributed among these distances:
35 21 0.11
36 6 0.03
37 3 0.02
39 3 0.02
40 21 0.11
41 32 0.17
42 8 0.04
43 47 0.26
44 6 0.03
45 6 0.03
46 26 0.14
47 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
GTGTCCTGCTTATTGAGGACAAAGGAAAAAAAGAAAGAAATA
Found at i:10410 original size:43 final size:42
Alignment explanation
Indices: 10352--10505 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 42
10342 AAAAAGAATA
* *
10352 CGTCCTACTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAAT
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAAT
* * * *
10394 ATGTCATGCTCTTTGAGGACTAGAAGGGAAAAGAAGG-AAATGAAGAG
1 -CGTCCTGCTCTTTGAGGAC-A-AA-GGAAAA-AAGGAAAACGAA-AT
* *
10441 CGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAAT
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAAT
*
10483 GGATCCTGCTCTTTGAGGACAAA
1 CG-TCCTGCTCTTTGAGGACAAA
10506 AGAGGAAAAT
Statistics
Matches: 90, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 6 0.07
43 45 0.50
44 3 0.03
45 3 0.03
46 28 0.31
47 5 0.06
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAAT
Found at i:10461 original size:124 final size:117
Alignment explanation
Indices: 10243--10470 Score: 282
Period size: 116 Copynumber: 1.9 Consensus size: 117
10233 GGGTGTCCCG
*
10243 CTTTTTGAGGACAAAGGAAAAAAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAAG
1 CTTTTTGAGGACAAAGGAAAAAAGAACGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAAG
* *
10308 AAAGGAAAGTGTCCTGCTTATTGAGGACAAA-GAGAAAAAGAATACGTCCTA
66 AAAGGAAAGCGTCCTACTTATTGAGGACAAAGGAGAAAAAGAATACGTCCTA
* *
10359 CTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATATGTCAT-GCTCTTTGAGGACTAGAAGGGA
1 CTTTTTGAGGACAAAGGAAAAAA-G--AACGAAATAGGTC-TCGCTCCTTGAGGAC-A-AA-GGA
* *
10423 AAAGAAGGAAATGAAGAGCGTCCTACTCT-TTGAGGACAAAGGAGAAAA
59 AAA-AAAGAAAGGAA-AGCGTCCTACT-TATTGAGGACAAAGGAGAAAA
10471 GGAAAACGAA
Statistics
Matches: 94, Mismatches: 7, Indels: 13
0.82 0.06 0.11
Matches are distributed among these distances:
116 23 0.24
117 1 0.01
119 23 0.24
120 2 0.02
121 2 0.02
122 6 0.06
123 9 0.10
124 20 0.21
125 8 0.09
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.19
Consensus pattern (117 bp):
CTTTTTGAGGACAAAGGAAAAAAGAACGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAAG
AAAGGAAAGCGTCCTACTTATTGAGGACAAAGGAGAAAAAGAATACGTCCTA
Found at i:10513 original size:89 final size:89
Alignment explanation
Indices: 10352--10514 Score: 249
Period size: 89 Copynumber: 1.8 Consensus size: 89
10342 AAAAAGAATA
* * *
10352 CGTCCTACTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATATGTCATGCTCTTTGAGGACTAG
1 CGTCCTACTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAATAGGTCATGCTCTTTGAGGACTAA
10417 AAGGGAAAAGAAGGAAATGAAGAG
66 AAGGGAAAAGAAGGAAATGAAGAG
* *
10441 CGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAAT-GGATCCTGCTCTTTGAGGAC-A
1 CGTCCTACTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAATAGG-TCATGCTCTTTGAGGACTA
10504 AAAGAGGAAAA
65 AAAG-GGAAAA
10515 TAAAGTGCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
88 5 0.07
89 62 0.93
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.18
Consensus pattern (89 bp):
CGTCCTACTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAATAGGTCATGCTCTTTGAGGACTAA
AAGGGAAAAGAAGGAAATGAAGAG
Found at i:10613 original size:38 final size:38
Alignment explanation
Indices: 10485--10628 Score: 137
Period size: 38 Copynumber: 3.6 Consensus size: 38
10475 AACGAAATGG
** *
10485 ATCCTGCTCTTTGAGGACAAAAGAGGAA-AATAAAGTGC
1 ATCCTGCTCTTTGAGGACAAAAG-GGAAGAGGAAAGAGC
* *
10523 ATCCTACTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGT
1 ATCCTGCTCTTTGAGGACAAAAGGG--AAG-AGGAAA-G-AGC
* *
10566 ATGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAGGGC
1 AT--CCTGCTCTTTGAGGACAAAAGGGAAGAGGAAAGAGC
10606 ATCCTGCTCTTTGAGGACTAAAA
1 ATCCTGCTCTTTGAGGAC-AAAA
10629 AGTGCCACCA
Statistics
Matches: 87, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
37 2 0.02
38 38 0.44
39 5 0.06
40 3 0.03
41 5 0.06
42 7 0.08
43 6 0.07
45 21 0.24
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (38 bp):
ATCCTGCTCTTTGAGGACAAAAGGGAAGAGGAAAGAGC
Found at i:10669 original size:14 final size:14
Alignment explanation
Indices: 10650--10682 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
10640 CTCGTGTGGG
*
10650 CTTTGCGTCCTGCT
1 CTTTGCGTCCTACT
10664 CTTTGCGTCCTACT
1 CTTTGCGTCCTACT
10678 CTTTG
1 CTTTG
10683 AGGACAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.03, C:0.33, G:0.18, T:0.45
Consensus pattern (14 bp):
CTTTGCGTCCTACT
Found at i:11249 original size:46 final size:44
Alignment explanation
Indices: 11199--11440 Score: 237
Period size: 46 Copynumber: 5.5 Consensus size: 44
11189 AATGAAATGT
11199 GTCCTGCTCTTTGAGGACTAGAAGGGAAAAGAAGGAAATGAAGAGC
1 GTCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAGC
* * *
11245 GTCCTGCTCTCTGAGGGCTAGAAGGGAAAAGAAGGAAATTAAGAGC
1 GTCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAGC
* *
11291 GTCCTACTCTTTGAGGACAAAGGAGAAAAGGAA--AACT-AA-ATGC
1 GTCCTGCTCTTTGAGGACAAAGG-GAAAA-GAAGGAAATGAAGA-GC
* * *
11334 GTCCTGCTCTTTGAGGACAAA-AG-AAA-AAGGAAAATAAAGTGC
1 GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGG-AAATGAAGAGC
* * *
11376 GTCCTGCTCTTTGAGGGCAAAAAGGAAAAGAAGGAAATGAAGTGC
1 GTCCTGCTCTTTGAGGAC-AAAGGGAAAAGAAGGAAATGAAGAGC
* *
11421 GTCCTACTCTTTGACGACAA
1 GTCCTGCTCTTTGAGGACAA
11441 GGCGTCCTGC
Statistics
Matches: 167, Mismatches: 17, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
38 2 0.01
40 3 0.02
41 4 0.02
42 22 0.13
43 27 0.16
44 10 0.06
45 34 0.20
46 65 0.39
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (44 bp):
GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGAGC
Found at i:11344 original size:43 final size:43
Alignment explanation
Indices: 11158--11440 Score: 221
Period size: 46 Copynumber: 6.5 Consensus size: 43
11148 AAAAAGAGTA
11158 CGTCCTGCT-TTTCGAGGACAAA--A-AAAAGGAAAATGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAGGAGAAAAGGAAAATGAAATG
* *
11198 TGTCCTGCTCTTTGAGGACTAGAAGG-GAAAAGAAGGAAATGAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AAGGAGAAAAG--GAAAATGAA-ATG
* * * *
11244 CGTCCTGCTCTCTGAGGGCTAGAAGG-GAAAAGAAGGAAATTAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AAGGAGAAAAG--GAAAATGAA-ATG
*
11290 CGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACT-AAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAA-TGAAATG
*
11333 CGTCCTGCTCTTTGAGGACAAAAGA-AAAAGGAAAAT-AAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAATGAAA-TG
* * *
11375 CGTCCTGCTCTTTGAGGGCAAAAAGGAAAAGAAGG-AAATGAAGTG
1 CGTCCTGCTCTTTGA-GG-ACAAAGGAGAA-AAGGAAAATGAAATG
* *
11420 CGTCCTACTCTTTGACGACAA
1 CGTCCTGCTCTTTGAGGACAA
11441 GGCGTCCTGC
Statistics
Matches: 207, Mismatches: 18, Indels: 33
0.80 0.07 0.13
Matches are distributed among these distances:
40 14 0.07
41 8 0.04
42 30 0.14
43 35 0.17
44 17 0.08
45 29 0.14
46 73 0.35
47 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAATGAAATG
Found at i:11399 original size:37 final size:38
Alignment explanation
Indices: 11289--11404 Score: 110
Period size: 42 Copynumber: 2.8 Consensus size: 38
11279 GAAATTAAGA
*
11289 GCGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACTAAAT
1 GCGTCCTGCTCTTTGAGGAC--A--A-AAAAGGAAAACTAAAT
11332 GCGTCCTGCTCTTTGAGGACAAAAGAAAAAGGAAAA-TAAAGT
1 GCGTCCTGCTCTTTGAGGAC---A-AAAAAGGAAAACTAAA-T
*
11374 GCGTCCTGCTCTTTGAGGGC-AAAAAGGAAAA
1 GCGTCCTGCTCTTTGAGGACAAAAAAGGAAAA
11405 GAAGGAAATG
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
37 11 0.16
41 4 0.06
42 30 0.43
43 21 0.30
44 3 0.04
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (38 bp):
GCGTCCTGCTCTTTGAGGACAAAAAAGGAAAACTAAAT
Found at i:11429 original size:130 final size:132
Alignment explanation
Indices: 11158--11440 Score: 357
Period size: 130 Copynumber: 2.2 Consensus size: 132
11148 AAAAAGAGTA
* *
11158 CGTCCTGCT-TTTCGAGGACAAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAA
1 CGTCCTACTCTTT-GAGGACAAAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAGGACTAGAA
* * * * *
11222 GGGAAAAGAAGGAAATGAAGAGCGTCCTGCTCTCTGAGGGCTAGAAGGGAAAAGAAGGAAATTAA
65 GAGAAAAGAAGGAAATAAAGAGCGTCCTGCTCTCTGAGGGCTAAAAAGGAAAAGAAGGAAATGAA
11287 GAG
130 GAG
11290 CGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACT-AAATGCGTCCTGCTCTTTGAGGAC-A
1 CGTCCTACTCTTTGAGGACAAA--A-AAAAGGAAAA-TGAAATGCGTCCTGCTCTTTGAGGACTA
* *
11353 -AA-AG-AAA-AAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGGC-AAAAAGGAAAAGAAGGAAA
62 GAAGAGAAAAGAAGG-AAATAAAGAGCGTCCTGCTCTCTGAGGGCTAAAAAGGAAAAGAAGGAAA
*
11413 TGAAGTG
126 TGAAGAG
*
11420 CGTCCTACTCTTTGACGACAA
1 CGTCCTACTCTTTGAGGACAA
11441 GGCGTCCTGC
Statistics
Matches: 134, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
130 46 0.34
131 29 0.22
132 18 0.13
133 5 0.04
134 2 0.01
135 33 0.25
136 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (132 bp):
CGTCCTACTCTTTGAGGACAAAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAGGACTAGAAG
AGAAAAGAAGGAAATAAAGAGCGTCCTGCTCTCTGAGGGCTAAAAAGGAAAAGAAGGAAATGAAG
AG
Found at i:11595 original size:61 final size:61
Alignment explanation
Indices: 11443--11785 Score: 359
Period size: 61 Copynumber: 5.7 Consensus size: 61
11433 GACGACAAGG
* * * * *
11443 CGTCCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA-AGAAAGG
1 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGA
** * * *
11503 CGTCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGA
1 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGA
* *
11564 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGAGGGCTTTGCAAAG-AAAAGG
1 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAAGAAAAAGA
* * * * ** ** * *
11625 CGTCCAGCTCTTTTAGGACTAAAAGCTACCACCAACTTGCCTACGCGTTAAAAGAAAAAGA
1 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGA
* * * * *
11686 CGTCC-CCTCTTTAAGCACTAAAAGGTGCCACCAACTCGTGTGGGATTTGAAAAAAAAAGA
1 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGA
* * * ** *
11746 TGTCCCGCTCTTTGAGGATTGGAAGGTGCCACCAATTCGT
1 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
11786 CGCCATACCT
Statistics
Matches: 230, Mismatches: 49, Indels: 7
0.80 0.17 0.02
Matches are distributed among these distances:
60 96 0.42
61 130 0.57
62 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (61 bp):
CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGA
Found at i:11595 original size:121 final size:120
Alignment explanation
Indices: 11443--11780 Score: 415
Period size: 121 Copynumber: 2.8 Consensus size: 120
11433 GACGACAAGG
* * *
11443 CGTCCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAGGCGTCT
1 CGTCC-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAGGCGTCC
* * ** * *
11508 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGA
65 AGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCCTACGCGTTAAAAGAAAAAGA
* *
11564 CGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGAGGGCTTTGCAAAGAAAAGGCGTC
1 CGTCC-GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAGGCGTC
* * * *
11629 CAGCTCTTTTAGGACTAAAAGCTACCACCAACTTGCCTACGCGTTAAAAGAAAAAGA
64 CAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCCTACGCGTTAAAAGAAAAAGA
* * * * * **
11686 CGTCCCCTCTTTAAGCACTAAAAGGTGCCACCAACTCGTGTGGGATTTGAAAAAAAAAGATGTCC
1 CGTCCGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAAAGAAAGGCGTCC
* * *
11751 CGCTCTTTGAGGATTGGAAGGTGCCACCAA
65 AGCTCTTTGAGGACTGAAAGGTGCCACCAA
11781 TTCGTCGCCA
Statistics
Matches: 183, Mismatches: 32, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
121 120 0.66
122 63 0.34
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (120 bp):
CGTCCGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAGGCGTCCA
GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGCCTACGCGTTAAAAGAAAAAGA
Found at i:12357 original size:45 final size:43
Alignment explanation
Indices: 12308--12538 Score: 143
Period size: 44 Copynumber: 5.3 Consensus size: 43
12298 GACAAAGAAA
*
12308 AAAAAGGAAAATGAAATGTGTCTTGCTCTTTGAGGACTAGAAGGG
1 AAAAAGGAAAATGAAATGCGTCTTGCTCTTTGAGGAC-A-AAGGG
* ** **
12353 AAAAAAAGG-AAATGAAGA-GCATCCAGCTCTTCAAGGACAAAGGAG
1 --AAAAAGGAAAATGAA-ATGCGTCTTGCTCTTTGAGGACAAAGG-G
* * ** *
12398 AAACAGAAAAACAAAATGCGTCTTGCTCTTTGAGGACAAA-AG
1 AAAAAGGAAAATGAAATGCGTCTTGCTCTTTGAGGACAAAGGG
* *
12440 AAAGAGGAAAAT-AAAGTGCGCCCTT-CTCTTTGAGGACAAAAGGG
1 AAAAAGGAAAATGAAA-TGCG-TCTTGCTCTTTGAGGAC-AAAGGG
* * * *
12484 AAAAGAAGG-AAATGAAGTACGACTTGCTCTTTGAGGACCAGAGGG
1 -AAA-AAGGAAAATGAAATGCGTCTTGCTCTTTGAGGA-CAAAGGG
*
12529 -AAGAGGAAAA
1 AAAAAGGAAAA
12539 GGCATCCTAC
Statistics
Matches: 143, Mismatches: 27, Indels: 32
0.71 0.13 0.16
Matches are distributed among these distances:
41 3 0.02
42 29 0.20
43 17 0.12
44 31 0.22
45 28 0.20
46 27 0.19
47 8 0.06
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.17
Consensus pattern (43 bp):
AAAAAGGAAAATGAAATGCGTCTTGCTCTTTGAGGACAAAGGG
Found at i:12537 original size:42 final size:43
Alignment explanation
Indices: 12419--12537 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 43
12409 CAAAATGCGT
* * * *
12419 CTTGCTCTTTGAGGA-CAAAAGAAAGAGGAAAATAAAGTGCGCC
1 CTTGCTCTTTGAGGACCAAAGGGAAGAGG-AAATAAAGTACGCA
* *
12462 CTT-CTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACG-A
1 CTTGCTCTTTGAGGACCAAAGGG--AAG-AGGAAATAAAGTACGCA
*
12506 CTTGCTCTTTGAGGACCAGAGGGAAGAGGAAA
1 CTTGCTCTTTGAGGACCAAAGGGAAGAGGAAA
12538 AGGCATCCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
42 17 0.27
43 10 0.16
44 3 0.05
45 30 0.48
46 3 0.05
ACGTcount: A:0.39, C:0.14, G:0.29, T:0.18
Consensus pattern (43 bp):
CTTGCTCTTTGAGGACCAAAGGGAAGAGGAAATAAAGTACGCA
Found at i:12646 original size:61 final size:62
Alignment explanation
Indices: 12543--12763 Score: 259
Period size: 61 Copynumber: 3.6 Consensus size: 62
12533 GGAAAAGGCA
* **
12543 TCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGTG
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* ** * *
12604 TCCTACTCTTTGAGGACTAAAAGGTGACAGTAACTTGCGTGGGCTTT-AAAAGAAAAAGACG
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * * * *
12665 TCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGGTTTG-AAAGAAAAAGATG
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
** ** *
12726 TCCCGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGT
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
12764 CCCCATACCT
Statistics
Matches: 134, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
60 5 0.04
61 129 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (62 bp):
TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
Found at i:13423 original size:47 final size:44
Alignment explanation
Indices: 13261--13501 Score: 201
Period size: 42 Copynumber: 5.5 Consensus size: 44
13251 AAAAAGAACA
* *
13261 CGTCCTGCTTTTTGAGGACAAAG-AAAAAAAGGAAAATAAAATG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAAGGAAAATGAAATG
*
13304 TGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAAAAGG-AAATGAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AA--GAAAAAAAAGGAAAATGAA-ATG
* * * * *
13351 CATCCTGCTCTTTAAGGACAAA-AGAGAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAAGGAAAATGAAATG
* * *
13394 CGTCCGGCTCTTTGAGGAC-AA-AAGAAAGAGGAAAAT-AAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAAGGAAAATGAAA-TG
* * * * *
13436 CGCCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGG-AAATGAAGTA
1 CGTCCTGCTCTTTGAGGAC-AAA-GAAAAAAAAGGAAAATGAAATG
*
13481 CGACCTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAGGACAA
13502 GAGGGAAGAG
Statistics
Matches: 158, Mismatches: 26, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.02
42 40 0.25
43 40 0.25
44 5 0.03
45 27 0.17
46 9 0.06
47 24 0.15
48 10 0.06
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (44 bp):
CGTCCTGCTCTTTGAGGACAAAGAAAAAAAAGGAAAATGAAATG
Found at i:13446 original size:42 final size:42
Alignment explanation
Indices: 13261--13501 Score: 200
Period size: 43 Copynumber: 5.5 Consensus size: 42
13251 AAAAAGAACA
* * *
13261 CGTCCTGCTTTTTGAGGACAAAGAAAAAAAGGAAAATAAAATG
1 CGTCCTGCTCTTTGAGGACAAA-AGAAAAAGGAAAATAAAGTG
* * * *
13304 TGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAAAAGG-AAATGAAGAG
1 CGTCCTGCTCTTTGAGGAC---AA---AAGAAAAAGGAAAATAAAGTG
* * *
13351 CATCCTGCTCTTTAAGGACAAAAGAGAAAAGGAAAACGAAA-TG
1 CGTCCTGCTCTTTGAGGACAAAAGA-AAAAGGAAAA-TAAAGTG
* *
13394 CGTCCGGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGAAAAAGGAAAATAAAGTG
* * *
13436 CGCCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGG-AAATGAAGTA
1 CGTCCTGCTCTTTGAGGACAAAA--G-AAA-AAGGAAAATAAAGTG
*
13481 CGACCTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAGGACAA
13502 GAGGGAAGAG
Statistics
Matches: 161, Mismatches: 23, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
41 6 0.04
42 38 0.24
43 43 0.27
44 5 0.03
45 31 0.19
46 5 0.03
47 23 0.14
48 9 0.06
49 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (42 bp):
CGTCCTGCTCTTTGAGGACAAAAGAAAAAGGAAAATAAAGTG
Found at i:13466 original size:978 final size:973
Alignment explanation
Indices: 11570--18744 Score: 6398
Period size: 978 Copynumber: 7.2 Consensus size: 973
11560 AAGACGTCCA
* * * *
11570 GCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGAGGGCTTTGCAAAGAAAAGGCGTCCAGCTC
1 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
* * * * ** * *
11635 TTTTAGGACTAAAAGCT-ACCACCAACTTGCCTACGCGTTAAAAGAAAAAGACGTCC-CCTCTTT
66 TTTGAGGACTAAAAGGTGA-CACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTT
* * * * *
11698 AAGCACTAAAAGGTGCCACCAACTCGTGTGGGATTTGAAAAAAAAAGATGTCCCGCTCTTTGAGG
130 GAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGG
* * * * *
11763 ATTGGAAGGTGCCACCAATTCGTCGCCATACCTTTCGACCCCTCGATCTAGTAATGCTTTGGGTT
195 ACTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTT
* ** * * * * *
11828 TCTAAAAAATTAGCCCAGACAAAATGAGGTGTCTACAGTTGCCCCTCTTTGGCTGTTTCTAAGTA
260 ACCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTA
* * *
11893 TCAGGAATAGGGCAAAGACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAAAAGAATGCTTA
325 TCAGGAATAGCGCAAAAACAAAAGACACCATTTTGTCCGTGAAGG---AAAAAAAAGAATGGTTA
** * * * * *
11958 GCTAAATGCATGTAAAAAAACAACATTCAAA-ATTTCTTTTTTGATTTTATGGTTTTCCCTGCTA
387 GCTAAATGCATGTAAAAGGACGACATACAAATTTTTTTTTTTTGATTTTATGGTTTTCCCTACTA
* *
12022 GGTTTTGAGATTTTCTAATGCTTGACCTCCTTAGATAGGTGTTGGTTACTTTAGGCTTTGGAAAG
452 GGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAG
* *
12087 GTTTGCCACCAACTTGTGTGGGTTTTTTTGGGTGCTGCCAACTTATGCAGACTTTAGGAAGGGAA
517 GTTTGCCACCAACTTGTGTGGG-CTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAAGGGAA
* *
12152 ATAAATGTAAGGGGTGTCCCACATTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCC
581 ATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCC
* *
12217 TTAAGGACAAAGGAAAAATGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACA
646 TTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACA
* *
12282 CGTCCTGCTTTTCGAAGACAAAGAAAAAAAAGGAAAATGAAATGTGTCTTGCTCTTTGAGGACTA
711 CGTCCTGCTTTTCGAGGACAAAG-AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTA
* * * *
12347 GAAGGGAAAAAAAGGAAATGAAGAGCATCCAGCTCTTCAAGGACAAAGGAGAAACAGAAAAACAA
775 GAAGGGAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAA-AGGAAAACGA
* *
12412 AATGCGTCTTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTTCTCTTTGAGGAC
839 AATGCGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGAC
* *
12477 AAAAGGGAAAAGAAGGAAATGAAGTACGACTTGCTCTTTGAGGACCAGAGGGAAGAGGAAAAGGC
904 AAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGC
12542 ATCCT
969 ATCCT
* * *
12547 ACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGTGTCCTACTC
1 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
* *
12612 TTTGAGGACTAAAAGGTGACAGTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCTTGCTCTTTG
66 TTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
*
12677 AGGACTAAAAGGTGCCACCAACTCATGTGGGGTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGA
131 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGA
*
12742 CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATACTTTGGGTTA
196 CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTTA
*
12807 CCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTTGCTGTTTCTGAGTAT
261 CCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTAT
*
12872 CAGGAATAGCGCAAAAAAAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGGTTAGCTA
326 CAGGAATAGCGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGGTTAGCTA
12937 AATGCATGTAAAAGGACGACATACAAATTTTTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGG
391 AATGCATGTAAAAGGACGACATACAAA--TTTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGG
*
13002 TTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTATGCTTTGGAAAGGT
454 TTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGT
*
13067 TTGCCACCAACTTGTGTGGGCTTTTTGGGCGTTGCCAACTTATGCAGACTTTAGGAAGGGAAATA
519 TTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAAGGGAAATA
* *
13132 AATGGAAAGGGTGTCCCACTTTTTGAGGTCAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTG
584 AATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTG
*
13197 AGGACAAAGGAAAAAAAAGAGAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACAC
649 AGGACAAAGG--AAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACAC
* *
13262 GTCCTGCTTTTTGAGGACAAAGAAAAAAAGGAAAATAAAATGTGTCCTGCTCTTTGAGGACTAGA
712 GTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGA
*
13327 AGGGAAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAAGAGAAAAGGAAAACGAAA
777 AGGG-AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAA
*
13392 TGCGTCCGGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAA
841 TGCGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAA
13457 AAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCAT
906 AAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCAT
13522 CCT
971 CCT
* *
13525 GCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTCTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
1 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
13590 TTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
66 TTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
* * *
13655 AGGACTAAAAGGTGCCACCAACTCTTGTGGGGTTTGAAAGAAAAAGATGTCCCGCCCTTTGAGGA
131 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGA
13720 CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTTA
196 CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTTA
* *
13785 CTGAAAAATTAACCCGAACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTAT
261 CCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTAT
* * *
13850 CAGGAATAGCGCAAGACCAAAAGACACCATTTTGTCCATGAAGGAAAAAAAAGAATGGTTAGCTA
326 CAGGAATAGCGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGGTTAGCTA
13915 AATGCATGTAAAAGGACGACATACAAATTTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGGTT
391 AATGCATGTAAAAGGACGACATACAAATTTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGGTT
* *
13980 TTGAGATTTTATAAAGCTTGACCTACTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTT
456 TTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTT
* *
14045 GCCACCAACTTGTGTAGGCTTTTTGGGTGTTGCCAACTTATGTAGACTTTAGGAAGGGAAATAAA
521 GCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAAGGGAAATAAA
* *
14110 TGGAAGGGGCGTCCCACTTTTTGAGGTCAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTGAG
586 TGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTGAG
* *
14175 GACAAAGGAAAAAAGAGAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCT
651 GACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCC
* *
14240 TGCTTTCCGAGGACAAAG-AAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
716 TGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
* * ** *
14304 AAAAAAAAGGAAATGAAGCGCATCCTGCTCTTTAAGGACAAAAGCTAAAAGGAAAACGAAATGTG
781 -AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAATGCG
* * * * *
14369 TCCTACTCTTTGAGGGCAAAAGAAAAAGGAAAATAAAGTGCGCCCTGCTCTTTGAAGAGAAAAGG
845 TCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAAAAGG
14434 GAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATCCT
910 GAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATCCT
* * *
14498 GCTCTTTGAGGACTAAAAAGTCCCAGCAACTCGTGTGGGCTTTGAAAAGAAAATGCGTCCTGCTC
1 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
*
14563 TTTGAGGACTAAAAGGTGACACTAACTTGCGTGAGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
66 TTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
*
14628 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTAAGGA
131 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGA
* * ** *
14693 CTGGAAGGTGCCACCAATTTGTCCCCACACCTTTTAACCCCTCCATCTAGTAATGCCTTGGGTTA
196 CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTTA
* *
14758 CCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTTTTTGGCTGTTTCTGAGTAT
261 CCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTAT
* * * * * *
14823 TAGGAATAGGGCAAAAACAAAAGATACCATTTTGTCTGTGAAGGAAAAAAAGGAATGCTTAGCTA
326 CAGGAATAGCGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGGTTAGCTA
* * * *
14888 AATGCATATGAAAGGACGACATTCAAATGTTTTTTTTTTTGATTTTGTGGTTTTCCCTACTAGGT
391 AATGCATGTAAAAGGACGACATACAAAT-TTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGGT
* *
14953 TTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCCTTGGAAAGCTT
455 TTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTT
* * * * * * *
15018 TGCCACCAATTTGTTTGGCCTTTTTGTGTGCTGCCAACTTATGCAAACTTTAGGAGGGGAAATAA
520 TGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAAGGGAAATAA
* * * *
15083 ATGGAAAGGGTGTCCCATTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTGTCGCTCGTTGA
585 ATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTGA
* * *
15148 GGACAAAAGAAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGACGAAGTGAAAAAGAACACGTC
650 GGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTC
* *
15213 CTGCTTTTCGAAGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTACTCTTTGAGGACTAGAAGG
715 CTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAAGG
* * * ** * *
15278 GAAAAGAAGGAACTGAAGAGCGTCCTGCTCTTTGCGGACTAGAAGG-GAAAAGAGGGAAATGAAG
780 GAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGAC-A-AAGGAG-AAA-AGGAAAACGAA-
* * * * * *
15342 A-GCGTCCTACTCTTTGACGACAAAGGAGAAA-AGGAAAACGAAA-TACGTCATGCTCTTTGAGG
840 ATGCGTCCTGCTCTTTGAGGACAAA--AGAAAGAGGAAAA-TAAAGTGCGCCCTGCTCTTTGAGG
* * * * * * *
15404 ACAAAA--G-AAAGAAGAAAATAAAGTGCGTCCTACTCTTTGAGGGA-AAAAGTGAAAAGAAGG-
902 ACAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGA-GGACAAGAG-G-GAAG-AGGA
* **
15464 AAATG-A-AGT
963 AAAGGCATCCT
** *** * * *
15473 GCGTC-TT-A-CTCT-TTGAG-G--A-CAA-----G-GGG----GAAGAGGAAAAGCCATCCTGC
1 GC-TCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AAGAAAAGGCGTCCTGC
* * * * * * *
15520 TTTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG-CGTCTTGCTCT
64 TCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTT-AAAAGAAAAAGACGTCCTGCTCT
*** * * *
15584 TTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAG-AAAAGACGTCCAGCTCTTCGA
128 TTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGA
** * *** ** *** * * *
15648 CGG-CTAAAAGGTGCCACCAACTCATGAGGGCTTTGA-AAAGAAAAGGCGTCCGGCT-CTTTTAG
193 -GGACTGGAAGGTGCCACCAATTC--G-TCCCCAT-ACCTTG-CAA--C--CC--CTCCATCTA-
** * * ****
15710 GACTGAAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAA--GACGTCCTG-CTCTTTGA-G
245 G--T--AA--TG-------CTT---TG-G-GTT-ACCGAAAAATTAAC--CCGGACAAAATGAGG
** * * * * * * * * * * * *
15771 -CACTAAAAGGTGCCACCGACTCAT-G-TAGGCTT-TGAGGA-CTGGAA-GGTGC--CACCAATT
289 TGTCT-ACAGCTGCC-CC-TCT-TTCGCT--GTTTCTGAGTATCAGGAATAGCGCAAAAACAA-A
* * * ** **** *** ** * ** * * * **
15828 CGTCCCCATACCTTTCAACCCCCCCA-TCTAGTAATGCTTTGGGTTACCAAAAAATTAACCCGGA
347 AGACACCAT---TTT--GTCCGTGAAGGAAAAAAAAG-AAT-GGTTAGC--TAAA-T--GCATG-
* ** * ** ***** * * * * * *** * ****
15892 CAAAATGAGGTGTC-TACAGCTGCCCCTCTTTGGCTGTTTCTGAG-TATCAGGAATAAGGCAAAG
399 TAAAA-G-GACGACATACAAATTTTTTTTTTTTGAT-TTTATG-GTTTTCCCTACT-AGGTTTTG
* **** * ** * * **** * * *** * * ** * * **
15955 ACAAAAGAC-ACCATTTTGTCAGTGAAGGAAAAAAAAAGAATGCTTAGCTAAATGCATGTAAAAA
459 A-GATTTTCTA-AAGCTTGAC-CT--CCTTAGATAGGTG-TTGGTTA-CTGTAGGC-TTTGGAAA
* * * * * ** * * * * * *
16019 GACGACATT--CA-AAATTTATTTTTTGATTTTAT-GGTTTTCCCTACTAGGTTTTG-A-AATTT
516 G--G--TTTGCCACCAACTT-GTGTGGGCTTTT-TGGGTGTTGCC-A--A-CTTATGCAGACTTT
*** * ** *** * * * * * *
16078 TCTATAGCTTGACGTCCTTAGATAGGTGTTGGT--TACTGTAGGCTTTGGAACGGTTTTGC-CAC
571 AGGA-AG--GGAAATAAATGGA-AGG-GGT-GTCCCACT-T----TTT-G-A-GG----ACAAAG
* ** ***** ** * * * **** * *
16140 CAACTTGTGTGGGCATTTGGGTGCT-ACTAACTT-ATGTAGACTTTAGAAAGGGAAATAAATGGA
618 GAA-AAGAAAATG-AAATAGGT-CTCGCT-CCTTGA-G--GACAAAGGAAA---AAAGAAAAGGA
* * ** * * * **
16203 AGGGGTATCCCACTTTTTGAGGACAAAG-GAAAAGAAAATGAAATAGGT-CTCGCTCCGT-GAGG
673 A--AGTGTCCTGCTTCTTGAGGACAAAGTG---A-AAAA-G-AACACGTCCT-GCT-TTTCGAGG
* * * * * *
16265 ATAAGGGAAAAAA-GAAAAGGAAA-GTGTCTTGCT-TCTTGAGGAC-A-AAGTG-----AA--AA
728 ACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCT-TTGAGGACTAGAAGGGAAAAAAAGGAA
* * * * * * * *
16318 A-GAACA-CGTTCTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGGGTCCTGCTCTTT
792 ATGAAGAGCATCCTGCTCTTT-AAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTGCTCTTT
* * ** * ** * *
16380 GAGGACTAGAAGGGAAAAAAAGG-AAACGAAGAGCATCCTGCTCTTTAAGCAC-AAAGGAGAAAA
856 GAGGAC-A-AA---AGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAAAAGG-GAAAA
* * * * * * *
16443 G--GAAAATGAAATGCGTCATGCTCTTTGAGGACAA-AAGAAAGAGGAAAATAAAGTGC-TCCCT
915 GAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGG---A-AAAG-GCAT-CCT
* * ** * **
16504 GCTCTTTGTGGA-TAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTC-TTTGAGGAC-AAGA
1 GCTCTTTGAGGACT--------AAA-AA-G---T---G--CCACCAACTCGTGTG-GG-CTTTGA
* * * * * *
16566 GGGAAGAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG
46 ---AA-A-GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTT-
* * * *** *
16631 AAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAA
105 AAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAA
* * ** * ***** *****
16695 GAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGGTTTGAAAGAAA
170 GAAAAAGATGTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAATTC--GT-CCCCAT--ACCTTG
* * * * * * * * * **
16760 AAGATGTCCCGCTCTTTGAGGAC-AGGAAAGTGCCACCAATT-CG-TCCCCATACCTTGCAACCC
230 CA-A---CCC-CTC---CA--TCTA-GTAA-TG----C-TTTGGGTTACCGAAAAATT--AA-CC
** * * ** * *
16822 CTCCATCTAGTAATGCTTTGG-GT-TACCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGC
275 C-GGA-C-A-AAATG---AGGTGTCTA-C----AGCT-GCCC---C----T---CT-T-T-C-GC
* * * * ** * * * ** **
16885 TGCTCCT--CTTTC-GCTGTTTCTGAGTATCAGGAATAGCGTAAAAACAAAAGACACCATTTTGT
313 TGTTTCTGAGTATCAG--GAAT-AGCGCAAAAACAA--------------AAGACACCATTTTGT
*
16947 CCGTGAAGGAAAAAAAAGAATGGTTAGCTAAATGCATGCAAAAGGACGACATACAAA-TTTTTTT
361 CCGTGAAGGAAAAAAAAGAATGGTTAGCTAAATGCATGTAAAAGGACGACATACAAATTTTTTTT
17011 TTTTGATTTTATGGTTTTCCCTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGG
426 TTTTGATTTTATGGTTTTCCCTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGG
*
17076 TGTTGGTTACTTTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCA
491 TGTTGGTTACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCA
*
17141 ACTTATGCAGACTTTAGGAAGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGTCAAAGGAA
556 ACTTATGCAGACTTTAGGAAGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAA
*
17206 AAGAAAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAGAAGGAAAGTGTCCTGCTT
621 AAGAAAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTT
* *
17271 CTTGAGGACAAAGTGAAAAAGAACACGTCCTACTTTTCTAGGACAAAGAAAAAAAGGAAAATGAA
686 CTTGAGGACAAAGTGAAAAAGAACACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAA
17336 ATGTGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTA
751 ATGTGTCCTGCTCTTTGAGGACTAGAAGGG--AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTA
* * * * * *
17401 AGGACAAAAGCGAAAAGGAAAACGAAATGTGTCCTGCTTTTTGAGGGCAAAAGAAAAAGGAAAAT
814 AGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAAT
* * * *
17466 AAAGTGCACCCTACTCTTTGAAGAGAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTG
879 AAAGTGCGCCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTG
*
17531 AGGAAAAGAGGGAAGAGGAAAAGGCATCCT
944 AGGACAAGAGGGAAGAGGAAAAGGCATCCT
*
17561 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCTTGCTC
1 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
* * * *
17626 TTTGAGGACTAAAAGGAGACACTAGCTTGCATGGGCTTTAGAAG-AAAAGACGTCCTGCTCTTTG
66 TTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
17690 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAA-ATGTCCCGCTCTTTGAGGA
131 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGA
* *
17754 CTGGAAGGTGCCACCAATTCGTCCCTATACCTTTCAACCCCTCCATCTAGTAATGCTTTGGGTTA
196 CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTTA
* *
17819 CCGAAAAATTAACCCAGG-CAGAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGTTTCTGAGTA
261 CCGAAAAATTAACCC-GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTA
* * *
17883 TTAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGCTTAGCT
325 TCAGGAATAGCGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGGTTAGCT
* * * *
17948 AAATGCATGTAAAAAGACGACATTCAAAAATTTTTTTTTTTGATTTTATGGTTTTCCCTACTACG
390 AAATGCATGTAAAAGGACGACATAC-AAATTTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGG
* *
18013 TTTTTAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGCT
454 TTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGT
* * * * * *
18078 TTGCCACCAATTTGTTTGGGCTTTTTAGGTGCTGCCAACTTATGCAAACTTTAGGAGGGGAAATA
519 TTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAAGGGAAATA
* * * *
18143 AATGGAAGGGGTGTCCGAATTTTAGAGGACAAAGGAAAAGAAAATGAAATAGGCCTCGCTCCTTG
584 AATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTG
* * **
18208 AGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGTTTCTTGTGGACAAAGTGAAAAAGAGTACGT
649 AGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGT
* *
18273 CCTGCTTTTCGAGGACAAAGAAAAAAAGG-AAATGAAGA-GCGTCCTGCTCTTTGCGGACTAGAA
714 CCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAA-ATGTGTCCTGCTCTTTGAGGACTAGAA
* * * *
18336 GGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAATG
778 GGGAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAATG
* * * * *
18401 CGTCCTGCTTTTTGAGGACAAAAAAAAGAAGG-AAATAAAGTGCGTCCTACTCTTTAAGGGA-AA
843 CGTCCTGCTCTTTGAGGACAAAAGAAAG-AGGAAAATAAAGTGCGCCCTGCTCTTTGA-GGACAA
* * * * * *
18464 AAGTGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAAGAGGGAAGAGGAAAAGCCAT
906 AAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCAT
18529 CCT
971 CCT
* * * *
18532 GCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAAAAGCGTCTTGCT
1 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCGTCCTGCT
* * * * *
18597 CTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTC
65 CTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTT
* * * ** * *
18662 GAGGGCTAAAAGGTGCCACCAACTCATGAGGGCTTT-AAAAAGAAAAGGCGTCCGGCTCTTTTAG
130 GAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGA-AAAAGATGTCCCGCTCTTTGAG
* *
18726 GACTGAAAGCTGCCACCAA
194 GACTGGAAGGTGCCACCAA
18745 CTTGCCTGCG
Statistics
Matches: 5031, Mismatches: 832, Indels: 673
0.77 0.13 0.10
Matches are distributed among these distances:
958 36 0.01
959 99 0.02
960 12 0.00
961 1 0.00
962 6 0.00
963 1 0.00
964 1 0.00
966 2 0.00
967 4 0.00
968 6 0.00
969 1 0.00
970 1 0.00
971 212 0.04
972 130 0.03
973 708 0.14
974 728 0.14
975 125 0.02
976 247 0.05
977 251 0.05
978 953 0.19
979 124 0.02
981 2 0.00
983 4 0.00
984 9 0.00
985 14 0.00
986 27 0.01
987 22 0.00
988 11 0.00
989 5 0.00
990 6 0.00
992 3 0.00
993 2 0.00
995 1 0.00
996 9 0.00
997 16 0.00
998 10 0.00
999 7 0.00
1000 4 0.00
1001 2 0.00
1002 4 0.00
1003 5 0.00
1004 7 0.00
1005 8 0.00
1006 7 0.00
1007 18 0.00
1008 3 0.00
1009 8 0.00
1010 3 0.00
1011 7 0.00
1012 10 0.00
1013 6 0.00
1014 10 0.00
1015 2 0.00
1017 2 0.00
1018 7 0.00
1019 2 0.00
1020 2 0.00
1021 2 0.00
1022 1 0.00
1023 33 0.01
1024 17 0.00
1025 15 0.00
1026 49 0.01
1027 37 0.01
1028 8 0.00
1029 13 0.00
1030 6 0.00
1031 7 0.00
1032 10 0.00
1033 35 0.01
1034 81 0.02
1035 50 0.01
1036 4 0.00
1037 22 0.00
1038 12 0.00
1039 22 0.00
1040 12 0.00
1041 3 0.00
1042 2 0.00
1043 1 0.00
1045 1 0.00
1047 1 0.00
1048 21 0.00
1049 14 0.00
1050 25 0.00
1051 3 0.00
1052 4 0.00
1053 20 0.00
1054 2 0.00
1055 10 0.00
1057 16 0.00
1058 21 0.00
1059 29 0.01
1060 14 0.00
1061 43 0.01
1062 17 0.00
1063 52 0.01
1064 4 0.00
1065 4 0.00
1066 3 0.00
1067 6 0.00
1068 10 0.00
1069 115 0.02
1070 53 0.01
1071 8 0.00
1072 6 0.00
1073 5 0.00
1074 6 0.00
1075 12 0.00
1076 6 0.00
1077 4 0.00
1078 8 0.00
1079 2 0.00
1080 17 0.00
1081 4 0.00
1082 6 0.00
1083 5 0.00
1084 6 0.00
1085 5 0.00
1086 1 0.00
1087 5 0.00
1088 10 0.00
1089 8 0.00
1090 12 0.00
1091 9 0.00
1092 9 0.00
1093 5 0.00
1094 2 0.00
1096 1 0.00
1097 3 0.00
1099 6 0.00
1100 4 0.00
1101 4 0.00
1102 3 0.00
1105 6 0.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (973 bp):
GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTC
TTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTG
AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGA
CTGGAAGGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGCTTTGGGTTA
CCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTCGCTGTTTCTGAGTAT
CAGGAATAGCGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGGTTAGCTA
AATGCATGTAAAAGGACGACATACAAATTTTTTTTTTTTGATTTTATGGTTTTCCCTACTAGGTT
TTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTT
GCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAAGGGAAATAAA
TGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTGAG
GACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCC
TGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAATGCGT
CCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAAAAGGG
AAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATCCT
Found at i:13490 original size:45 final size:44
Alignment explanation
Indices: 13307--13515 Score: 173
Period size: 45 Copynumber: 4.8 Consensus size: 44
13297 TAAAATGTGT
* *
13307 CCTGCTCTTTGAGGACTAGAAGGGAAAAAAAAGGAAATGAAG-A-GCA
1 CCTGCTCTTTGAGGAC-AAAAGGG--AAAAGAGGAAATGAAGTACG-A
* * * * * * *
13353 TCCTGCTCTTTAAGGACAAAAGAGAAAAG-GAAAACGAAATGCGT
1 -CCTGCTCTTTGAGGACAAAAGGGAAAAGAGGAAATGAAGTACGA
* * * *
13397 CCGGCTCTTTGAGGACAAAA--G-AAAGAGGAAAATAAAGTGCGC
1 CCTGCTCTTTGAGGACAAAAGGGAAAAGAGG-AAATGAAGTACGA
13439 CCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACGA
1 CCTGCTCTTTGAGGACAAAAGGGAAAAG-AGGAAATGAAGTACGA
*
13484 CCTGCTCTTTGAGGACAAGAGGG--AAGAGGAAA
1 CCTGCTCTTTGAGGACAAAAGGGAAAAGAGGAAA
13516 AGGCATCCTG
Statistics
Matches: 133, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
40 4 0.03
41 2 0.02
42 34 0.26
43 28 0.21
44 5 0.04
45 37 0.28
46 8 0.06
47 15 0.11
ACGTcount: A:0.41, C:0.15, G:0.28, T:0.16
Consensus pattern (44 bp):
CCTGCTCTTTGAGGACAAAAGGGAAAAGAGGAAATGAAGTACGA
Found at i:13625 original size:61 final size:62
Alignment explanation
Indices: 13521--13736 Score: 262
Period size: 61 Copynumber: 3.5 Consensus size: 62
13511 GGAAAAGGCA
* * * *
13521 TCCTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTC-TGGGCTTTGAAAAG-AAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTG-CGTGGGCTTTGAAAAGAAAAAGACG
* *
13582 TCCTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTT-AAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAAGAAAAAGACG
* * *
13643 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCT-TGTGGGGTTTG-AAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACT-TGCGTGGGCTTTGAAAAGAAAAAGACG
* * **
13704 TCCCGCCCTTTGAGGACTGGAAGGTGCCACCAA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
13737 TTCGTCCCCA
Statistics
Matches: 136, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
60 6 0.04
61 129 0.95
62 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (62 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAAGAAAAAGACG
Found at i:14190 original size:42 final size:41
Alignment explanation
Indices: 14130--14229 Score: 100
Period size: 41 Copynumber: 2.4 Consensus size: 41
14120 GTCCCACTTT
*
14130 TTGAGGTCAAAGG--AAAAGAAAATGAAATAG-GT-CTCGCTCC
1 TTGAGGACAAAGGAAAAAAGAAAA-GAAA-AGTGTCCT-GCTCC
* * *
14170 TTGAGGACAAAGGAAAAAAGAGAAGGAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAAAGAAAAGAAAAGTGTCCTGCTCC
14211 TTGAGGACAAAGTGAAAAA
1 TTGAGGACAAAG-GAAAAA
14230 GAACACGTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
40 14 0.27
41 21 0.41
42 16 0.31
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAAAGAAAAGAAAAGTGTCCTGCTCC
Found at i:14295 original size:42 final size:43
Alignment explanation
Indices: 14248--14474 Score: 158
Period size: 42 Copynumber: 5.2 Consensus size: 43
14238 CTTGCTTTCC
*
14248 GAGGAC-AAAGAAAAAAGGAAAACGAAATGTGTCCTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTT
* * ** *
14290 GAGGACTAGAAGGGAAAAAAAAGG-AAATGAAGCGCATCCTGCTCTTT
1 GAGGAC-A-AA---AGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTT
* ** * *
14337 AAGGACAAAAGCTAAAAGGAAAACGAAATGTGTCCTACTCTTT
1 GAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTT
* * *
14380 GAGGGCAAAAG-AAAAAGGAAAA-TAAAGTGCGCCCTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAACGAAA-TGCGTCCTGCTCTTT
* * * * * *
14422 GAAGAGAAAAGGGAAAAGAAGG-AAATGAAGTACGACCTGCTCTTT
1 GAGGACAAAA--GAAAA-AAGGAAAACGAAATGCGTCCTGCTCTTT
14467 GAGGACAA
1 GAGGACAA
14475 GAGGGAAGAG
Statistics
Matches: 140, Mismatches: 32, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
41 3 0.02
42 42 0.30
43 26 0.19
44 1 0.01
45 29 0.21
46 7 0.05
47 23 0.16
48 9 0.06
ACGTcount: A:0.43, C:0.15, G:0.26, T:0.17
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTT
Found at i:14480 original size:45 final size:46
Alignment explanation
Indices: 14394--14481 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
14384 GCAAAAGAAA
* * *
14394 AAGGAAAATAAAGTGCGCCCTGCTCTTTGAAGAGAAAAGGGAAAAG
1 AAGGAAAATAAAGTACGACCTGCTCTTTGAAGACAAAAGGGAAAAG
* * *
14440 AAGG-AAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAA
1 AAGGAAAATAAAGTACGACCTGCTCTTTGAAGACAAAAGGGAA
14482 GAGGAAAAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 32 0.89
46 4 0.11
ACGTcount: A:0.41, C:0.14, G:0.30, T:0.16
Consensus pattern (46 bp):
AAGGAAAATAAAGTACGACCTGCTCTTTGAAGACAAAAGGGAAAAG
Found at i:14707 original size:61 final size:61
Alignment explanation
Indices: 14494--14709 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
14484 GGAAAAGGCA
* * * *
14494 TCCTGCTCTTTGAGGACTAAAAAGTCCCAGCAACTCGTGTGGGCTTTGAAAAGAAAATG-CG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAAGAAAAAGACG
* * * * * *
14555 TCCTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGAGCTTTAAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* *
14616 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* * **
14677 TCCCGCTCTTTAAGGACTGGAAGGTGCCACCAA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
14710 TTTGTCCCCA
Statistics
Matches: 132, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
60 9 0.07
61 123 0.93
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
Found at i:15475 original size:45 final size:44
Alignment explanation
Indices: 15231--15494 Score: 232
Period size: 46 Copynumber: 5.9 Consensus size: 44
15221 CGAAGACAAA
* * * *
15231 GAAAAAAAGGAAAATGAAATGTGTCCTACTCTTTGAGGACTAGAAGG
1 GAAAAGAAGG-AAATGAAGTGCGTCCTACTCTTTGAGGAC-A-AAAG
* * * * *
15278 GAAAAGAAGGAACTGAAGAGCGTCCTGCTCTTTGCGGACTAGAAGG
1 GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGAC-A-AAAG
* * *
15324 GAAAAGAGGGAAATGAAGAGCGTCCTACTCTTTGACGAC-AAAG
1 GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAG
* * * * * *
15367 GAGAA-AAGGAAAACGAAATACGTCATGCTCTTTGAGGACAAAA-
1 GAAAAGAAGG-AAATGAAGTGCGTCCTACTCTTTGAGGACAAAAG
* *
15410 G-AAAGAAGAAAATAAAGTGCGTCCTACTCTTTGAGGGA-AAAAG
1 GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGA-GGACAAAAG
*
15453 TGAAAAGAAGGAAATGAAGTGCGTCTTACTCTTTGAGGACAA
1 -GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAA
15495 GGGGGAAGAG
Statistics
Matches: 176, Mismatches: 33, Indels: 18
0.78 0.15 0.08
Matches are distributed among these distances:
42 28 0.16
43 36 0.20
44 7 0.04
45 32 0.18
46 64 0.36
47 9 0.05
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.19
Consensus pattern (44 bp):
GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAAAG
Found at i:15587 original size:61 final size:62
Alignment explanation
Indices: 15514--15805 Score: 326
Period size: 61 Copynumber: 4.8 Consensus size: 62
15504 GGAAAAGCCA
* *
15514 TCCTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG-CG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * *
15575 TCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTG-AAAG-AAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * * * *
15635 TCCAGCTCTTCGACGG-CTAAAAGGTGCCACCAACTCATGAGGGCTTTGAAAAG-AAAAGGCG
1 TCCTGCTCTTTGA-GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * * * * ** * *
15696 TCCGGCTCTTTTAGGACTGAAAGCTGCCACCAACTTGCCTGCGCGTT-AAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * * *
15757 TCCTGCTCTTTGAGCACTAAAAGGTGCCACCGACTCATGTAGGCTTTGA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGA
15806 GGACTGGAAG
Statistics
Matches: 186, Mismatches: 39, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
59 5 0.03
60 51 0.27
61 129 0.69
62 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (62 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
Found at i:15662 original size:121 final size:122
Alignment explanation
Indices: 15529--15805 Score: 369
Period size: 121 Copynumber: 2.3 Consensus size: 122
15519 CTTTTTGAGG
* * **
15529 ACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCGTCTTGCTCTTTGAGGACTA
1 ACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGCGTCCGGCTCTTTGAGGACTA
* * * * *
15594 AAAGGTGCCACCAACTTGCGTGGGCTTTGAAAG-AAAAGACGTCCAGCTCTTCGA-C
66 AAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCAGCTCTTCGAGC
* * * *
15649 GGCTAAAAGGTGCCACCAACTCATGAGGGCTTTGAAAAGAAAAGGCGTCCGGCTCTTTTAGGACT
1 -ACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGCGTCCGGCTCTTTGAGGACT
* * *
15714 GAAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCTGCTCTTTGAGC
65 AAAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCAGCTCTTCGAGC
* *
15772 ACTAAAAGGTGCCACCGACTCATGTAGGCTTTGA
1 ACTAAAAGGTGCCACCAACTCATGTGGGCTTTGA
15806 GGACTGGAAG
Statistics
Matches: 134, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
121 84 0.63
122 49 0.37
123 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (122 bp):
ACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGCGTCCGGCTCTTTGAGGACTA
AAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCAGCTCTTCGAGC
Found at i:16384 original size:43 final size:43
Alignment explanation
Indices: 16328--16563 Score: 180
Period size: 43 Copynumber: 5.4 Consensus size: 43
16318 AGAACACGTT
*
16328 CTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGGGTC
1 CTGCTCTTT-GAGGACAAAGAAAAAAAGGAAAATGAAATGCGTC
* *
16371 CTGCTCTTTGAGGACTAGAAGGGAAAAAAAGG-AAACGAAGA-GCATC
1 CTGCTCTTTGAGGAC-A-AA--GAAAAAAAGGAAAATGAA-ATGCGTC
* * * *
16417 CTGCTCTTTAAGCACAAAGGAGAAAAGGAAAATGAAATGCGTC
1 CTGCTCTTTGAGGACAAAGAAAAAAAGGAAAATGAAATGCGTC
* * *
16460 ATGCTCTTTGAGGACAAA-AGAAAGAGGAAAAT-AAAGTGC-TCC
1 CTGCTCTTTGAGGACAAAGAAAAAAAGGAAAATGAAA-TGCGT-C
* * * * * *
16502 CTGCTCTTTGTGGATAAAAGGGAAAAGAAGG-AAATGAAGTACGAC
1 CTGCTCTTTGAGGA-CAAA--GAAAAAAAGGAAAATGAAATGCGTC
16547 CTGCTCTTTGAGGACAA
1 CTGCTCTTTGAGGACAA
16564 GAGGGAAGAG
Statistics
Matches: 150, Mismatches: 27, Indels: 31
0.72 0.13 0.15
Matches are distributed among these distances:
41 4 0.03
42 35 0.23
43 39 0.26
44 8 0.05
45 23 0.15
46 30 0.20
47 11 0.07
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19
Consensus pattern (43 bp):
CTGCTCTTTGAGGACAAAGAAAAAAAGGAAAATGAAATGCGTC
Found at i:16686 original size:61 final size:62
Alignment explanation
Indices: 16583--16803 Score: 290
Period size: 61 Copynumber: 3.6 Consensus size: 62
16573 GGAAAAGGCA
* *
16583 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * * *
16644 TCCTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTT-AAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * *
16705 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGGTTTG-AAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* *
16766 TCCCGCTCTTTGAGGAC-AGGAAA-GTGCCACCAATTCGT
1 TCCTGCTCTTTGAGGACTA--AAAGGTGCCACCAACTCGT
16804 CCCCATACCT
Statistics
Matches: 140, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
60 6 0.04
61 131 0.94
62 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (62 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
Found at i:17251 original size:42 final size:41
Alignment explanation
Indices: 17191--17290 Score: 100
Period size: 41 Copynumber: 2.4 Consensus size: 41
17181 GTCCCACTTT
*
17191 TTGAGGTCAAAGG--AAAAGAAAATGAAATAG-GT-CTCGCTCC
1 TTGAGGACAAAGGAAAAAAGAAAA-GAAA-AGTGTCCT-GCTCC
* * *
17231 TTGAGGACAAAGGAAAAAAGAGAAGGAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAAAGAAAAGAAAAGTGTCCTGCTCC
17272 TTGAGGACAAAGTGAAAAA
1 TTGAGGACAAAG-GAAAAA
17291 GAACACGTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
40 14 0.27
41 21 0.41
42 16 0.31
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAAAGAAAAGAAAAGTGTCCTGCTCC
Found at i:17357 original size:43 final size:42
Alignment explanation
Indices: 17310--17465 Score: 127
Period size: 43 Copynumber: 3.5 Consensus size: 42
17300 CTACTTTTCT
17310 AGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTG
1 AGGACAAA-AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTG
** *
17353 AGGACTAGAAGGGAAAAAAAAAGG-AAATGAAGA-GCATCCTGCTCTTTA
1 AGGAC----A---AAAAAAAAAGGAAAATGAA-ATGTGTCCTGCTCTTTG
** * *
17401 AGGACAAAAGCGAAAAGGAAAACGAAATGTGTCCTGCTTTTTG
1 AGGACAAAA-AAAAAAGGAAAATGAAATGTGTCCTGCTCTTTG
* *
17444 AGGGCAAAAGAAAAAGGAAAAT
1 AGGACAAAAAAAAAAGGAAAAT
17466 AAAGTGCACC
Statistics
Matches: 88, Mismatches: 14, Indels: 23
0.70 0.11 0.18
Matches are distributed among these distances:
41 3 0.03
42 17 0.19
43 30 0.34
44 1 0.01
47 1 0.01
48 24 0.27
49 10 0.11
50 2 0.02
ACGTcount: A:0.46, C:0.12, G:0.25, T:0.17
Consensus pattern (42 bp):
AGGACAAAAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTG
Found at i:17371 original size:48 final size:47
Alignment explanation
Indices: 17319--17453 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 47
17309 TAGGACAAAG
* *
17319 AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGGAA
1 AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGAC-AAAAGCG-A
** *
17368 AAAAAAAGG-AAATGAAGA-GCATCCTGCTCTTTAAGGACAAAAGCG-
1 AAAAAAAGGAAAATGAA-ATGTGTCCTGCTCTTTGAGGACAAAAGCGA
* * *
17413 ---AAAAGGAAAACGAAATGTGTCCTGCTTTTTGAGGGCAAAAG
1 AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAG
17454 AAAAAGGAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
42 7 0.10
43 26 0.36
47 5 0.07
48 24 0.33
49 10 0.14
ACGTcount: A:0.43, C:0.13, G:0.25, T:0.19
Consensus pattern (47 bp):
AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGCGA
Found at i:17762 original size:60 final size:59
Alignment explanation
Indices: 17548--17770 Score: 252
Period size: 60 Copynumber: 3.7 Consensus size: 59
17538 GAGGGAAGAG
* * *
17548 GAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC-TGTGGGCTTTG-AAA
* * * * * *
17609 GAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGAGACACTAGCT-TGCATGGGCTTT-AGAA
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCTG--TGGGCTTTGA-AA
17669 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAA
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC-TGTGGGCTTTGAAA
* * * **
17729 GAAAAAATGTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
17771 TTCGTCCCTA
Statistics
Matches: 138, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
59 3 0.02
60 87 0.63
61 46 0.33
62 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (59 bp):
GAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCTGTGGGCTTTGAAA
Found at i:18147 original size:974 final size:973
Alignment explanation
Indices: 15800--18744 Score: 4672
Period size: 972 Copynumber: 3.0 Consensus size: 973
15790 CTCATGTAGG
*
15800 CTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCCCCATCTAGTAATGC
1 CTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATCTAGTAATGC
*
15865 TTTGGGTTACCAAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGTT
66 TTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGTT
* * *
15930 TCTGAGTATCAGGAATAAGGCAAAGACAAAAGACACCATTTTGTCAGTGAAGGAAAAAAAAAGAA
131 TCTGAGTATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGG-AAAAAAAAGAA
*
15995 TGCTTAGCTAAATGCATGTAAAAAGACGACATTC-AAAA-TTTATTTTTTGATTTTATGGTTTTC
195 TGCTTAGCTAAATGCATGTAAAAAGACGACATTCAAAAATTTTTTTTTTTGATTTTATGGTTTTC
* * *
16058 CCTACTAGGTTTTGAAATTTTCTATAGCTTGACGTCCTTAGATAGGTGTTGGTTACTGTAGGCTT
260 CCTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTT
* * * * * * *
16123 TGGAACGGTTTTGCCACCAACTTGTGTGGGC-ATTTGGGTGCTACTAACTTATGTAGACTTTAGA
325 TGGAA-AGCTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAGACTTTAGG
*
16187 AAGGGAAATAAATGGAAGGGGTATCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTC
389 AAGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTC
* * * *
16252 TCGCTCCGTGAGGATAAGGGAAAAAAGAAAAGGAAAGTGTCTTGCTTCTTGAGGACAAAGTGAAA
454 TCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAA
* *
16317 AAGAACACGTTCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGGGTCCTGCTCTTTGA
519 AAGAACACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGA
* *
16382 GGACTAGAAGGGAAAAAAAGGAAACGAAGAGCATCCTGCTCTTTAAGCACAAAGGAGAAAAGGAA
584 GGACTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAA
* * * * * *
16447 AATGAAATGCGTCATGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCTCCCTGCTCTTTG
649 AACGAAATGCGTCCTGCTTTTTGAGGACAAAAGAAAAAGGAAAATAAAGTGCACCCTACTCTTTG
** *
16512 TGGATAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAA
714 AAGAGAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAA
16577 AAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGG
779 AAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGG
* *
16642 CGTCCTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTC
844 CGTCTTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAGAAGAAAAAGACGTC
*
16707 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGGTTTGAAAGAAAAAGATGTCCCGC
909 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAA-ATGTCCCGC
16772 T
973 T
* * *
16773 CTTTGAGGACAGGAAAGTGCCACCAATTCGTCCCCATACCTTGCAACCCCTCCATCTAGTAATGC
1 CTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATCTAGTAATGC
* *
16838 TTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCTCCTCTTTCGCTGTT
66 TTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGTT
* *
16903 TCTGAGTATCAGGAATAGCGTAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAAT
131 TCTGAGTATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAAT
* * * *
16968 GGTTAGCTAAATGCATGCAAAAGGACGACA-T-ACAAATTTTTTTTTTTGATTTTATGGTTTTCC
196 GCTTAGCTAAATGCATGTAAAAAGACGACATTCAAAAATTTTTTTTTTTGATTTTATGGTTTTCC
*
17031 CTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTTTAGGCTTT
261 CTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTT
* *
17096 GGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAGACTTTAGGAA
326 GGAAAGCTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAGACTTTAGGAA
*
17161 GGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGTCAAAGGAAAAGAAAATGAAATAGGTCTC
391 GGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTC
*
17226 GCTCCTTGAGGACAAAGGAAAAAAGAGAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
456 GCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
* * *
17291 GAACACGTCCTACTTTTCTAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGG
521 GAACACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAGG
* *
17356 ACTAGAAGGGAAAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAAGCGAAAAGGAA
586 ACTAGAAGGG--AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAA
* *
17421 AACGAAATGTGTCCTGCTTTTTGAGGGCAAAAGAAAAAGGAAAATAAAGTGCACCCTACTCTTTG
649 AACGAAATGCGTCCTGCTTTTTGAGGACAAAAGAAAAAGGAAAATAAAGTGCACCCTACTCTTTG
*
17486 AAGAGAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGAAAAGAGGGAAGAGGAA
714 AAGAGAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAA
17551 AAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGG
779 AAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGG
* * *
17616 CGTCTTGCTCTTTGAGGACTAAAAGGAGACACTAGCTTGCATGGGCTTTAGAAG-AAAAGACGTC
844 CGTCTTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAGAAGAAAAAGACGTC
17680 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAATGTCCCGCT
909 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAATGTCCCGCT
*
17745 CTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCTATACCTTTCAACCCCTCCATCTAGTAATGC
1 CTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATCTAGTAATGC
*
17810 TTTGGGTTACCGAAAAATTAACCCAGG-CAGAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGT
66 TTTGGGTTACCGAAAAATTAACCC-GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGT
*
17874 TTCTGAGTATTAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAA
130 TTCTGAGTATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAA
17939 TGCTTAGCTAAATGCATGTAAAAAGACGACATTCAAAAATTTTTTTTTTTGATTTTATGGTTTTC
195 TGCTTAGCTAAATGCATGTAAAAAGACGACATTCAAAAATTTTTTTTTTTGATTTTATGGTTTTC
* *
18004 CCTACTACGTTTTTAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTT
260 CCTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTT
* * * *
18069 TGGAAAGCTTTGCCACCAATTTGTTTGGGCTTTTTAGGTGCTGCCAACTTATGCAAACTTTAGGA
325 TGGAAAGCTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAGACTTTAGGA
* * * * *
18134 GGGGAAATAAATGGAAGGGGTGTCCGAATTTTAGAGGACAAAGGAAAAGAAAATGAAATAGGCCT
390 AGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCT
* *
18199 CGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGTTTCTTGTGGACAAAGTGAAAA
455 CGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAA
** *
18264 AGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGG-AAATGAAGA-GCGTCCTGCTCTTTGC
520 AGAACACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAA-ATGCGTCCTGCTCTTTGA
* * * *
18327 GGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAA
584 GGACTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAA
* **
18392 AACGAAATGCGTCCTGCTTTTTGAGGACAAAAAAAAGAAGG-AAATAAAGTGCGTCCTACTCTTT
649 AACGAAATGCGTCCTGCTTTTTGAGGACAAAAGAAA-AAGGAAAATAAAGTGCACCCTACTCTTT
* * * * * *
18456 -AAGGGAAAAAGTGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAAGAGGGAAGAGG
713 GAAGAG-AAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGG
* * *
18520 AAAAGCCATCCTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAA
777 AAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAA
* * *
18585 AAGCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTT-GAAAGAAAAAGA
841 AGGCGTCTTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAG-AAGAAAAAGA
* * * * * ***
18649 CGTCCAGCTCTTCGAGGGCTAAAAGGTGCCACCAACTCATGAGGGCTTTAAAAAGAAAAGGCGTC
905 CGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTT-GAAAGAAAAAATGTC
*
18714 CGGCT
969 CCGCT
* * *
18719 CTTTTAGGACTGAAAGCTGCCACCAA
1 CTTTGAGGACTGGAAGGTGCCACCAA
18745 CTTGCCTGCG
Statistics
Matches: 1818, Mismatches: 139, Indels: 29
0.92 0.07 0.01
Matches are distributed among these distances:
970 4 0.00
971 239 0.13
972 627 0.34
973 322 0.18
974 626 0.34
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (973 bp):
CTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATCTAGTAATGC
TTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCTGTT
TCTGAGTATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAAT
GCTTAGCTAAATGCATGTAAAAAGACGACATTCAAAAATTTTTTTTTTTGATTTTATGGTTTTCC
CTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTT
GGAAAGCTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAGACTTTAGGAA
GGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTC
GCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
GAACACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAGG
ACTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAA
CGAAATGCGTCCTGCTTTTTGAGGACAAAAGAAAAAGGAAAATAAAGTGCACCCTACTCTTTGAA
GAGAAAAGGGAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAA
GGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
TCTTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAGAAGAAAAAGACGTCCT
GCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAATGTCCCGCT
Found at i:18348 original size:46 final size:44
Alignment explanation
Indices: 18270--18515 Score: 229
Period size: 45 Copynumber: 5.6 Consensus size: 44
18260 AAAAAGAGTA
* *
18270 CGTCCTGCT-TTTCGAGGACAAA--GAAAAAAAGGAAATGAAGAG
1 CGTCCTACTCTTT-GAGGACAAAGGGAAAAGAAGGAAATGAAGAG
* *
18312 CGTCCTGCTCTTTGCGGACTAGAAGGGAAAAGAAGGAAATGAAGAG
1 CGTCCTACTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAG
* *
18358 CGTCCTACTCTTTGAGGACAAAGGAGAAAAG--GAAAACGAA-ATG
1 CGTCCTACTCTTTGAGGACAAAGG-GAAAAGAAGGAAATGAAGA-G
* * * * *
18401 CGTCCTGCTTTTTGAGGACAAA--AAAAAGAAGGAAATAAAGTG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGAG
* * * *
18443 CGTCCTACTCTTTAAGGGAAAAAGTGAAAAGAAGGAAATGAAGTG
1 CGTCCTACTCTTTGA-GGACAAAGGGAAAAGAAGGAAATGAAGAG
*
18488 CGTCCTACTCTTTAAGGACAAGAGGGAA
1 CGTCCTACTCTTTGAGGACAA-AGGGAA
18516 GAGGAAAAGC
Statistics
Matches: 169, Mismatches: 21, Indels: 25
0.79 0.10 0.12
Matches are distributed among these distances:
40 5 0.03
42 34 0.20
43 38 0.22
44 11 0.07
45 45 0.27
46 36 0.21
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.19
Consensus pattern (44 bp):
CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGAG
Found at i:18415 original size:43 final size:42
Alignment explanation
Indices: 18270--18522 Score: 199
Period size: 43 Copynumber: 5.8 Consensus size: 42
18260 AAAAAGAGTA
* *
18270 CGTCCTGCT-TTTCGAGGACAAAGAAAAAAAGGAAATGAAGAG
1 CGTCCTGCTCTTT-GAGGACAAAGGAGAAAAGGAAATGAAGAG
* *
18312 CGTCCTGCTCTTTGCGGACTAGAAGGGAAAAGAAGGAAATGAAGAG
1 CGTCCTGCTCTTTGAGGAC-A-AA-GGAGAA-AAGGAAATGAAGAG
* *
18358 CGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAA-ATG
1 CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGG-AAATGAAGA-G
* * * * *
18401 CGTCCTGCTTTTTGAGGACAAA-AAAAAGAAGGAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGAGAA-AAGGAAATGAAGAG
* * * * *
18443 CGTCCTACTCTTTAAGGGAAAAAGTGAAAAGAAGGAAATGAAGTG
1 CGTCCTGCTCTTTGA-GGACAAAG-GAGAA-AAGGAAATGAAGAG
* * *
18488 CGTCCTACTCTTTAAGGACAAGAGG-GAAGAGGAAA
1 CGTCCTGCTCTTTGAGGACAA-AGGAGAAAAGGAAA
18523 AGCCATCCTG
Statistics
Matches: 176, Mismatches: 22, Indels: 26
0.79 0.10 0.12
Matches are distributed among these distances:
42 46 0.26
43 48 0.27
44 10 0.06
45 41 0.23
46 31 0.18
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.18
Consensus pattern (42 bp):
CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAATGAAGAG
Found at i:18500 original size:130 final size:130
Alignment explanation
Indices: 18270--18523 Score: 354
Period size: 130 Copynumber: 1.9 Consensus size: 130
18260 AAAAAGAGTA
* * *
18270 CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATGAAGAGCGTCCTGCTCTTTGCGGACTAGA
1 CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATAAAGAGCGTCCTACTCTTTGCGGAC-AAA
*
18335 AGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGACAA-AGGAGAAAAGGAAAACGAAA
65 AGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTAAGGACAAGAGG-GAAAAGGAAAACGAAA
18399 TG
129 TG
* *
18401 CGTCCTGCTTTTTGAGGACAAA-AAAAAGAAGGAAATAAAGTGCGTCCTACTCTTTAAG-GGA-A
1 CGTCCTGCTTTTCGAGGACAAAGAAAAA-AAGGAAATAAAGAGCGTCCTACTCTTT--GCGGACA
* * *
18463 AAAGTGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAAGAGGGAAGAGGAAAA
63 AAAGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTAAGGACAAGAGGGAAAAGGAAAA
18524 GCCATCCTGC
Statistics
Matches: 110, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
130 58 0.53
131 48 0.44
132 3 0.03
133 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (130 bp):
CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATAAAGAGCGTCCTACTCTTTGCGGACAAAA
GGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTAAGGACAAGAGGGAAAAGGAAAACGAAATG
Found at i:18660 original size:61 final size:61
Alignment explanation
Indices: 18528--18871 Score: 368
Period size: 61 Copynumber: 5.6 Consensus size: 61
18518 GGAAAAGCCA
* * *
18528 TCCTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAAA-AGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAAGAAAAAGA-CG
* * *
18590 TCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* * * * * * *
18651 TCCAGCTCTTCGAGGGCTAAAAGGTGCCACCAACTCATGAGGGCTTT-AAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGA-AAAAGACG
* * * * * ** * * *
18712 TCCGGCTCTTTTAGGACTGAAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* * * *
18773 TCCTGCTCTTTGAGCACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
* ** *
18834 TCTTGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
18872 CCACATACCT
Statistics
Matches: 227, Mismatches: 52, Indels: 7
0.79 0.18 0.02
Matches are distributed among these distances:
60 4 0.02
61 176 0.78
62 47 0.21
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAAGACG
Found at i:18747 original size:122 final size:122
Alignment explanation
Indices: 18539--18866 Score: 426
Period size: 122 Copynumber: 2.7 Consensus size: 122
18529 CCTGCTTTTT
* *
18539 GAGGACTAAAAAGTGCCACCAACTCGT-ATGGGCTTTGAAAAGAAAAAAGCGTCTTGCTCTTTGA
1 GAGGACTAAAAAGTGCCACCAACTCATGA-GGGCTTT-AAAAGAAAAAGGCGTCTTGCTCTTTGA
* * * * *
18603 GGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGACGTCCAGCTCTTC
64 GGACTGAAAGGTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCAGCTCTTC
* * ** *
18662 GAGGGCTAAAAGGTGCCACCAACTCATGAGGGCTTTAAAA-AGAAAAGGCGTCCGGCTCTTTTAG
1 GAGGACTAAAAAGTGCCACCAACTCATGAGGGCTTTAAAAGA-AAAAGGCGTCTTGCTCTTTGAG
* * *
18726 GACTGAAAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCTGCTCTTT
65 GACTGAAAGGTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCAGCTCTTC
* * * **
18784 GAGCACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCTTGCTCTTTGAGG
1 GAGGACTAAAAAGTGCCACCAACTCATGAGGGCTTTAAAAGAAAAAGGCGTCTTGCTCTTTGAGG
*
18849 ACTGGAAGGTGCCACCAA
66 ACTGAAAGGTGCCACCAA
18867 TTCGTCCACA
Statistics
Matches: 175, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
121 1 0.01
122 141 0.81
123 32 0.18
124 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (122 bp):
GAGGACTAAAAAGTGCCACCAACTCATGAGGGCTTTAAAAGAAAAAGGCGTCTTGCTCTTTGAGG
ACTGAAAGGTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCAGCTCTTC
Found at i:19594 original size:46 final size:46
Alignment explanation
Indices: 19499--19611 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
19489 CGAAATGCGT
* *
19499 CCTGCTCTTTGAGGACAAAA--G--AAAGAGGAAAATAAAGTGCGC
1 CCTGCTCTTTGAGGACAAAAGGGAAAAAGAGGAAAATAAAGTACGA
* *
19541 CCTGCTCTTTGAGGATAAAAGGGAAAAAGAAGG-AAATGAAGTACGA
1 CCTGCTCTTTGAGGACAAAAGGGAAAAAG-AGGAAAATAAAGTACGA
*
19587 CCTGCTCTTTGAGGACAAGAGGGAA
1 CCTGCTCTTTGAGGACAAAAGGGAA
19612 GAGGAAAAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
42 19 0.32
44 1 0.02
46 37 0.62
47 3 0.05
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.18
Consensus pattern (46 bp):
CCTGCTCTTTGAGGACAAAAGGGAAAAAGAGGAAAATAAAGTACGA
Found at i:19617 original size:131 final size:132
Alignment explanation
Indices: 19368--19619 Score: 284
Period size: 131 Copynumber: 1.9 Consensus size: 132
19358 AGAACACGTT
* * * **
19368 CTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGGGTCCTGCTTTTTGAGGACTGGAAGG
1 CTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGCGCCCTGCTCTTTGAGGACTAAAAGG
* *
19433 GAGAAAAAGGAAACGAAGAGCATCCTGCTCTTTAAGCATAAAGGAGAAAAGGAAAACGAAATGCG
66 GAAAAAAAGGAAACGAAGAGCATCCTGCTCTTTAAGCACAAAGGAGAAAAGGAAAACGAAATGCG
19498 TC
131 TC
* *
19500 CTGCTCTTT-GAGGACAAA-AGAAAGAGGAAAAT-AAAGTGCGCCCTGCTCTTTGAGGA-TAAAA
1 CTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAATGAAA-TGCGCCCTGCTCTTTGAGGACTAAAA
* * * *
19561 GGGAAAAAGAAGGAAATGAAGTA-CGA-CCTGCTCTTTGAGGACAAGAGG-GAAGAGGAAAA
64 GGGAAAAA-AAGGAAACGAAG-AGC-ATCCTGCTCTTTAAGCACAA-AGGAGAAAAGGAAAA
19620 GGCATCTTGC
Statistics
Matches: 101, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
130 13 0.13
131 66 0.65
132 19 0.19
133 3 0.03
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.17
Consensus pattern (132 bp):
CTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGCGCCCTGCTCTTTGAGGACTAAAAGG
GAAAAAAAGGAAACGAAGAGCATCCTGCTCTTTAAGCACAAAGGAGAAAAGGAAAACGAAATGCG
TC
Found at i:19727 original size:61 final size:61
Alignment explanation
Indices: 19615--19835 Score: 243
Period size: 61 Copynumber: 3.6 Consensus size: 61
19605 GAGGGAAGAG
* * * * *
19615 GAAAAGGCATCTTGCTCTTTGACGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA
1 GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTCGTGTGGGCTTTGAAAA
* ** * *
19676 GAAAAGGCGTCCTGCTCTTTGAGGGCTAAAAGGTAACACTAACTTGCGTGGGCTTT-AAAA
1 GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTCGTGTGGGCTTTGAAAA
** *
19736 GAAAAGATGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTCATGTGGGCTTTG-AAA
1 GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTCGTGTGGGCTTTGAAAA
** *
19796 GAAAAAGATGT-CTCGCTCTTTGAGGAC-AGGAAGGTGCCAC
1 G-AAAAGGCGTCCT-GCTCTTTGAGGACTA-AAAGGTGCCAC
19836 CAATTCGTCC
Statistics
Matches: 137, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
60 59 0.43
61 78 0.57
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (61 bp):
GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTCGTGTGGGCTTTGAAAA
Found at i:19748 original size:60 final size:60
Alignment explanation
Indices: 19627--19822 Score: 214
Period size: 60 Copynumber: 3.2 Consensus size: 60
19617 AAAGGCATCT
* * ** * ** **
19627 TGCTCTTTGACGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACTAAAAGGTAACACTAACTCACGTGGGCTTT-AAAAGAAAAGATGTCC
* **
19688 TGCTCTTTGAGGGCTAAAAGGTAACACTAACTTGCGTGGGCTTTAAAAGAAAAGATGTCC
1 TGCTCTTTGAGGACTAAAAGGTAACACTAACTCACGTGGGCTTTAAAAGAAAAGATGTCC
** * *
19748 TGCTCTTTGAGGACTAAAAGGTGCCACTAACTCATGTGGGCTTTGAAAGAAAAAGATGT-C
1 TGCTCTTTGAGGACTAAAAGGTAACACTAACTCACGTGGGCTTTAAAAG-AAAAGATGTCC
19808 TCGCTCTTTGAGGAC
1 T-GCTCTTTGAGGAC
19823 AGGAAGGTGC
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 58 0.50
61 58 0.50
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (60 bp):
TGCTCTTTGAGGACTAAAAGGTAACACTAACTCACGTGGGCTTTAAAAGAAAAGATGTCC
Found at i:20185 original size:971 final size:971
Alignment explanation
Indices: 18667--20752 Score: 3137
Period size: 971 Copynumber: 2.1 Consensus size: 971
18657 TCTTCGAGGG
* * * * *
18667 CTAAAAGGTGCCACCAACTCATGAGGGCTTTAAAAAGAAAAGGCGTCCGGCTCTTTTAGGACTGA
1 CTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAA
* * * * * * *
18732 AAGCTGCCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCTGCTCTTTGAGCACTAAAAAG
65 AAGGTGCCACCAACTTGCGTGGGCTTTAAAAG-AAAAGATGTCCTGCTCTTTGAGGACTAAAAGG
* *
18797 TGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCTTGCTCTTTGAGGACTGGAAGGTGCC
129 TGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCTCGCTCTTTGAGGACAGGAAGGTGCC
18862 ACCAATTCGTCCACATACCTTTCAACCCCCCCCATCTAGTAATGCTTTGGGTTACCAAAAAATTA
194 ACCAATTCGTCCACATACCTTTCAACCCCCCCCATCTAGTAATGCTTTGGGTTACCAAAAAATTA
* * *
18927 ACCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCCTTGGCTGTTTCTGAGTATCAGGAATAAGG
259 ACCCGGACAAAATGAGGCGTCTACAGCTGCCCCTCCTTGGCTATTTCTGAGTATCAAGAATAAGG
* *
18992 CAAAGACAAAAGACACCATTTTGTCAGTGAAGGAAAAAAAAGAATGCTTAGCTAAATGCATGTAA
324 CAAAAACAAAAGACACCATTTTGTCAGTGAAGGAAAAAAAAGAATGCTTAGCTAAATACATGTAA
*
19057 AAGGACGACATTCAAAATTTGTTTTTTGATTTTATGGTTTTCCCTACTAGGCTTTGAAATTTTCT
389 AAGGACGACATTCAAAATTTGTTTTTTGATTTTATGATTTTCCCTACTAGGCTTTGAAATTTTCT
* * *
19122 ATAGCTTGACGTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAACGGTTTGCCACCAACTTG
454 AAAGCTTGACGTCCTTAGATAGGTGTTGGCTACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTG
* * *
19187 TGTGGGCATTTGGGTGCTACTAACTTATGTAGACTTTAGAAAGGGAAATAAATGGAAGGGGTGTC
519 TGTGGGCATTTGGGTGCTACCAACTTATGCAAACTTTAGAAAGGGAAATAAATGGAAGGGGTGTC
19252 CCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCGTGAGGAC-AAGGTAAAA
584 CCACTTTTT-AGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCGTGAGGACAAAGG-AAAA
19316 AAG-AAAAG-GAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGT-TCTGCTTTTCG
647 AAGAAAAAGAGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCT-TGCTTTTCG
* * * * * *
19378 AGGACAAAGAAAAAAAGGAAAATGAAATGGGTCCTGCTTTTTGAGGACTGGAAGGGAGAAAAAGG
711 AGGAAAAAGAAAAAAAGGAAAACGAAATGAGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAAAGG
* * *
19443 AAACGAAGAGCATCCTGCTCTTTAAGCATAAAGGAGAAAAGGAAAACGAAATGCGTCCTGCTCTT
776 AAACGAAGAGCATCCTGCTCGTTAAGCACAAAGGAGAAAAGGAAAACAAAATGCGTCCTGCTCTT
*
19508 TGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGATAAAAGGGAAAAAGAAG
841 TGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAAAAGGG-AAAAGAAG
19573 GAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCAT-CTTGCTCTTTGA
905 GAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGC-TGCTCTTTGA
19637 CGA
969 CGA
* *
19640 CTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGGGCTAA
1 CTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAA
** *
19705 AAGGTAACACTAACTTGCGTGGGCTTTAAAAGAAAAGATGTCCTGCTCTTTGAGGACTAAAAGGT
65 AAGGTGCCACCAACTTGCGTGGGCTTTAAAAGAAAAGATGTCCTGCTCTTTGAGGACTAAAAGGT
*
19770 GCCACTAACTCATGTGGGCTTTGAAAGAAAAAGATGTCTCGCTCTTTGAGGACAGGAAGGTGCCA
130 GCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCTCGCTCTTTGAGGACAGGAAGGTGCCA
* * *
19835 CCAATTCGTCCCCATACCTTTCAA-CCCCTCCATCTAGTAATGCTTTGGGTTACCGAAAAATTAA
195 CCAATTCGTCCACATACCTTTCAACCCCCCCCATCTAGTAATGCTTTGGGTTACCAAAAAATTAA
* *
19899 CCCGGACAAAATGAGGCGTCTACAGCTGCCCCTCTTTGGCTATTTCTGAGTATCAAGAATAGGGC
260 CCCGGACAAAATGAGGCGTCTACAGCTGCCCCTCCTTGGCTATTTCTGAGTATCAAGAATAAGGC
*
19964 AAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGCATT-GCTAAATACATGTAA
325 AAAAACAAAAGACACCATTTTGTCAGTGAAGGAAAAAAAAGAATGC-TTAGCTAAATACATGTAA
* * *
20028 AAGGACGACATTC-AAATTTTTTTTTTGATTTTATGATTTTCCCTACTAGGTTTTGAGATTTTCT
389 AAGGACGACATTCAAAATTTGTTTTTTGATTTTATGATTTTCCCTACTAGGCTTTGAAATTTTCT
*
20092 AAAGCTTGATC-TCCTTAGATAGGTGTTGGCTACTGTTGGCTTTGGAAAGGTTTGCCACCAACTT
454 AAAGCTTGA-CGTCCTTAGATAGGTGTTGGCTACTGTAGGCTTTGGAAAGGTTTGCCACCAACTT
* * * * *
20156 GTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAAACTTTAGGAAGGGAAATAATTGGAAGGGGTG
518 GTGTGGGC-ATTTGGGTGCTACCAACTTATGCAAACTTTAGAAAGGGAAATAAATGGAAGGGGTG
* *
20221 TCCCTCTTTTTAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAA
582 TCCCACTTTTTAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCGTGAGGACAAAGGAAAA
* **
20286 AAGAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAATAGTACGTCTTGCTTT
647 AAGAAAAAG----AGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCTTGCTTT
* *
20351 TCGAGGAAAAAGAAAAAAAGGAAAACGAAATTAGTCCTGCTCTTTGAGGTCTAGAAGGGAAAAAA
708 TCGAGGAAAAAGAAAAAAAGGAAAACGAAATGAGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAA
* * ** *
20416 AGGAAATGAAGAGCATCCTGCTCGTTAAGGACAGTGGAGAAAAGGAAAACAAAATGCTTCCTGCT
773 AGGAAACGAAGAGCATCCTGCTCGTTAAGCACAAAGGAGAAAAGGAAAACAAAATGCGTCCTGCT
*
20481 CTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGGGAAAAGA
838 CTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAAAAGGGAAAAGA
* * * * *
20546 AGGAAATGAAGTGCGTCCTTCTCTTTGAGGACAAGGGGGAAGAGGATAAGGCATGCTGCTCTTTG
903 AGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGCTGCTCTTTG
*
20611 AGGA
968 ACGA
* * * * * * * *
20615 CTAAAAGGAGACACTAACTTGCGTGGGCTATAGAAGAAAAAGACGTCCTGCTCTTTGAGGACTAA
1 CTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTAA
*** * * * **
20680 AAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAATGTCCCGCTCTTTGAGGACTGGAAGGT
65 AAGGTGCCACCAACTTGCGTGGGCTTTAAAAGAAAAGATGTCCTGCTCTTTGAGGACTAAAAGGT
20745 GCCACCAA
130 GCCACCAA
20753 TTCGTCCCTA
Statistics
Matches: 1001, Mismatches: 99, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
970 164 0.16
971 237 0.24
972 117 0.12
973 82 0.08
974 4 0.00
975 178 0.18
976 218 0.22
977 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (971 bp):
CTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAA
AGGTGCCACCAACTTGCGTGGGCTTTAAAAGAAAAGATGTCCTGCTCTTTGAGGACTAAAAGGTG
CCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCTCGCTCTTTGAGGACAGGAAGGTGCCAC
CAATTCGTCCACATACCTTTCAACCCCCCCCATCTAGTAATGCTTTGGGTTACCAAAAAATTAAC
CCGGACAAAATGAGGCGTCTACAGCTGCCCCTCCTTGGCTATTTCTGAGTATCAAGAATAAGGCA
AAAACAAAAGACACCATTTTGTCAGTGAAGGAAAAAAAAGAATGCTTAGCTAAATACATGTAAAA
GGACGACATTCAAAATTTGTTTTTTGATTTTATGATTTTCCCTACTAGGCTTTGAAATTTTCTAA
AGCTTGACGTCCTTAGATAGGTGTTGGCTACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTG
TGGGCATTTGGGTGCTACCAACTTATGCAAACTTTAGAAAGGGAAATAAATGGAAGGGGTGTCCC
ACTTTTTAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCGTGAGGACAAAGGAAAAAAGA
AAAAGAGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCTTGCTTTTCGAGGAA
AAAGAAAAAAAGGAAAACGAAATGAGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAAAGGAAACG
AAGAGCATCCTGCTCGTTAAGCACAAAGGAGAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAGG
ACAAAAGAAAGAGGAAAATAAAGTGCGCCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATG
AAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGCTGCTCTTTGACGA
Found at i:20369 original size:35 final size:32
Alignment explanation
Indices: 20288--20369 Score: 76
Period size: 35 Copynumber: 2.4 Consensus size: 32
20278 AAGGAAAAAA
20288 GAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
1 GAAAAAGAAAAA-AAAGTGTCCTGCTTCTTGAG
* * * *
20321 GACAAAGTGAAAAATAGTACGTCTTGCTT-TTCGAG
1 GAAAAAG-AAAAAAAAGT--GTCCTGCTTCTT-GAG
20356 GAAAAAGAAAAAAA
1 GAAAAAGAAAAAAA
20370 GGAAAACGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
33 10 0.26
34 11 0.29
35 17 0.45
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (32 bp):
GAAAAAGAAAAAAAAGTGTCCTGCTTCTTGAG
Found at i:20560 original size:45 final size:46
Alignment explanation
Indices: 20384--20579 Score: 178
Period size: 42 Copynumber: 4.4 Consensus size: 46
20374 AACGAAATTA
* * * * *
20384 GTCCTGCTCTTTGAGGTCTAGAAGGGAAAAAAAGG-AAATGAAGAGC
1 GTCCTGCTCTTTGAGGAC-AAAAGGGAAAAGAAGGAAAATAAAGTGC
* * * * * *
20430 ATCCTGCTCGTTAAGGAC---AGTGGAGAA-AAGGAAAACAAAATGC
1 GTCCTGCTCTTTGAGGACAAAAG-GGAAAAGAAGGAAAATAAAGTGC
*
20473 TTCCTGCTCTTTGAGGACAAAA--G-AAAG-AGGAAAATAAAGTGC
1 GTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAAATAAAGTGC
*
20515 GTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGG-AAATGAAGTGC
1 GTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAAATAAAGTGC
*
20560 GTCCTTCTCTTTGAGGACAA
1 GTCCTGCTCTTTGAGGACAA
20580 GGGGGAAGAG
Statistics
Matches: 122, Mismatches: 18, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
42 42 0.34
43 28 0.23
44 1 0.01
45 33 0.27
46 18 0.15
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.20
Consensus pattern (46 bp):
GTCCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAAATAAAGTGC
Found at i:20702 original size:61 final size:60
Alignment explanation
Indices: 20601--20752 Score: 180
Period size: 61 Copynumber: 2.5 Consensus size: 60
20591 ATAAGGCATG
* * * **
20601 CTGCTCTTTGAGGACTAAAAGGAGACACTAACTTGCGTGGGCTATAG-AAGAAAAAGACGTC
1 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCACGTGGGCT-TAGAAAGAAAAA-ACGTC
* * *
20662 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAATGTC
1 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCACGTGGGCTTAGAAAGAAAAAACGTC
* **
20722 CCGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 CTGCTCTTTGAGGACTAAAAGGTGCCACCAA
20753 TTCGTCCCTA
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
60 34 0.43
61 45 0.57
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (60 bp):
CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCACGTGGGCTTAGAAAGAAAAAACGTC
Found at i:21209 original size:914 final size:911
Alignment explanation
Indices: 19676--21667 Score: 2984
Period size: 914 Copynumber: 2.2 Consensus size: 911
19666 GCTTTGAAAA
* * *
19676 GAAAAGGCGTCCTGCTCTTTGAGGGCTAAAAGGTA-ACACTAACTTGCGTGGGCTTTAAAAG-AA
1 GAAAAGCCATCCTGCTCTTTGAGGACTAAAAGG-AGACACTAACTTGCGTGGGCTTTAAAAGAAA
* *
19739 AAGATGTCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTCATGTGGGCTTTGAAAGAAAAAGA
65 AAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGA
* *
19804 TGTCTCGCTCTTTGAGGACAGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATC
130 TGTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATC
19869 TAGTAATGCTTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGCGTCTACAGCTGCCCCTCT
195 TAGTAATGCTTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGCGTCTACAGCTGCCCCTCT
19934 TTGGCTATTTCTGAGTATCAAGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAA
260 TTGGCTATTTCTGAGTATCAAGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAA
*
19999 AAAAAGAATGCATTGCTAAATACATGTAAAAGGACGACATTCAAATTTTTTTTTTGATTTTATGA
325 AAAAAGAATGCATTGCTAAATACATGTAAAAAGACGACATTCAAATTTTTTTTTTGATTTTATGA
* * * *
20064 TTTTCCCTACTAGGTTTTGAGATTTTCTAAAGCTTGATCTCCTTAGATAGGTGTTGGCTACTGTT
390 TTTTCCCTACTACGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGCTACTATA
* * * *
20129 GGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACTTATGCAAACTT
455 GGCTTTGGAAAGCTTTGCCACCAACTTGTCTGGGCTTTTTAGGTGCTGCCAACTTATGCAAACTT
* ** *
20194 TAGGAAGGGAAATAATTGGAAGGGGTGTCCCTCTTTTTAGGACAAAGGAAAAGAAAATGAAATAG
520 TAGGAAGGGAAATAAATGGAAGGGGTGTCCCAATTTTGAGGACAAAGGAAAAGAAAATGAAATAG
*
20259 GTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGAC
585 GCCTCGCTCCTTGAGGACAAAGG----AAGAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGAC
* * *
20324 AAAGTGAAAAATAGTACGTCTTGCTTTTCGAGGAAAAAGAAAAAAAGGAAAACGAA-ATTAGTCC
646 AAAGTGAAAAAGAGTACGTCCTGCTTTTCGAGGAAAAAGAAAAAAAGG-AAACGAAGA-GAGTCC
* * **
20388 TGCTCTTTGAGGTCTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTGCTCGTTAAGGACAGTGG
709 TGCTCTTTGAGGACTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTACTCGTTAAGGACAAAGG
* *
20453 AG-AAAAGGAAAACAAAATGCTTCCTGCTCTTTGAGGACAAAAGAAAG-AGGAAAATAAAGTGCG
774 AGAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAGGACAAAAAAAAGAAGG-AAATAAAGTGCG
* * * *
20516 TCCTGCTCTTTGA-GGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTTCTCTTTGAGGACAA
838 TCCTACTCTTTAAGGGA-AAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAA
20580 GGGGGAAGAG
902 GGGGGAAGAG
* * * * *
20590 GATAAGGCATGCTGCTCTTTGAGGACTAAAAGGAGACACTAACTTGCGTGGGCTATAGAAGAAAA
1 GAAAAGCCATCCTGCTCTTTGAGGACTAAAAGGAGACACTAACTTGCGTGGGCTTTAAAAGAAAA
20655 AGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAA-AT
66 AGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGAT
*
20719 GTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCTATACCTTTCAACCCCTCCATCT
131 GTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATCT
* *
20784 AGTAATGCTTTGGGTTACCGAAAAATTAACCCAGG-CAGAATGAGGTGTCTACAGCTGCCCCTCT
196 AGTAATGCTTTGGGTTACCGAAAAATTAACCC-GGACAAAATGAGGCGTCTACAGCTGCCCCTCT
* *
20848 TTGGCTGTTTCTGAGTATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAA
260 TTGGCTATTTCTGAGTATCAAGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGG-AA
* *
20913 AAAAAAGAATGC-TTAGCTAAATGCATGTAAAAAGACGACATTCAATTTTTTTTTTTTTTGATTT
324 AAAAAAGAATGCATT-GCTAAATACATGTAAAAAGACGACATTCAA---ATTTTTTTTTTGATTT
* *
20977 TATCG-TTTTCCCTACTACGTTTTTAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGTT
385 TAT-GATTTTCCCTACTACGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGCT
*
21041 ACTATAGGCTTTGGAAAGCTTTGCCACCAATTTGTCTGGGCTTTTTAGGTGCTGCCAACTTATGC
449 ACTATAGGCTTTGGAAAGCTTTGCCACCAACTTGTCTGGGCTTTTTAGGTGCTGCCAACTTATGC
* *
21106 AAACTTTAGGAGGGGAAATAAATGGAAGGGGGTGTCCGAATTTTAGAGGACAAAGGAAAAGAAAA
514 AAACTTTAGGAAGGGAAATAAATGGAA-GGGGTGTCCCAATTTT-GAGGACAAAGGAAAAGAAAA
* * *
21171 TGAAATAGGCCTCGCTCCTTGAGGACAAAGG-A-AAAAAGAAAAGGAAAGTGTCCTGTTTCTTGT
577 TGAAATAGGCCTCGCTCCTTGAGGACAAAGGAAGAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGA
* * *
21234 GGACAAAGTGAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATGAAGAGCGT
642 GGACAAAGTGAAAAAGAGTACGTCCTGCTTTTCGAGGAAAAAGAAAAAAAGGAAACGAAGAGAGT
* * * * *
21299 CCTGCTCTTTGCGGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGACAAA
707 CCTGCTCTTTGAGGACTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTACTCGTTAAGGACAAA
*
21364 GGAGAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAGGACAAAAAAAAGAAGGAAATAAAGTGC
772 GGAGAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAGGACAAAAAAAAGAAGGAAATAAAGTGC
*
21429 GTCCTACTCTTTAAGGGAAAAAGTGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAA
837 GTCCTACTCTTTAAGGGAAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAA
21494 GGGGGAAGAG
902 GGGGGAAGAG
* * * * * * **
21504 GAAAAGCCATCCTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAA
1 GAAAAGCCATCCTGCTCTTTGAGGACTAAAAGGAGACACTAACTTGCGTGGGCTTT-AAAAGAAA
* ***
21569 AAG-CGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGA
65 AAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGA
* * * * **
21633 CGTCCAGCTCTTCGAGGGCTAAAAGGTGCCACCAA
130 TGTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAA
21668 CTTGTGTGGG
Statistics
Matches: 976, Mismatches: 85, Indels: 33
0.89 0.08 0.03
Matches are distributed among these distances:
913 69 0.07
914 534 0.55
915 154 0.16
918 156 0.16
919 14 0.01
920 49 0.05
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (911 bp):
GAAAAGCCATCCTGCTCTTTGAGGACTAAAAGGAGACACTAACTTGCGTGGGCTTTAAAAGAAAA
AGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGAT
GTCCCGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGTCCCCATACCTTTCAACCCCTCCATCT
AGTAATGCTTTGGGTTACCGAAAAATTAACCCGGACAAAATGAGGCGTCTACAGCTGCCCCTCTT
TGGCTATTTCTGAGTATCAAGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAA
AAAAGAATGCATTGCTAAATACATGTAAAAAGACGACATTCAAATTTTTTTTTTGATTTTATGAT
TTTCCCTACTACGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAGGTGTTGGCTACTATAG
GCTTTGGAAAGCTTTGCCACCAACTTGTCTGGGCTTTTTAGGTGCTGCCAACTTATGCAAACTTT
AGGAAGGGAAATAAATGGAAGGGGTGTCCCAATTTTGAGGACAAAGGAAAAGAAAATGAAATAGG
CCTCGCTCCTTGAGGACAAAGGAAGAAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGACAAAGT
GAAAAAGAGTACGTCCTGCTTTTCGAGGAAAAAGAAAAAAAGGAAACGAAGAGAGTCCTGCTCTT
TGAGGACTAGAAGGGAAAAAAAGGAAATGAAGAGCATCCTACTCGTTAAGGACAAAGGAGAAAAA
GGAAAACAAAATGCGTCCTGCTCTTTGAGGACAAAAAAAAGAAGGAAATAAAGTGCGTCCTACTC
TTTAAGGGAAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAAGGGGGAAGA
G
Found at i:21332 original size:46 final size:43
Alignment explanation
Indices: 21254--21493 Score: 247
Period size: 44 Copynumber: 5.5 Consensus size: 43
21244 AAAAAGAGTA
* *
21254 CGTCCTGCT-TTTCGAGGACAAA-GAAAAAAAGGAAATGAAGAG
1 CGTCCTACTCTTT-GAGGACAAAGGAAAAGAAGGAAATGAAGAG
* *
21296 CGTCCTGCTCTTTGCGGACTAGAAGGGAAAAGAAGGAAATGAAGAG
1 CGTCCTACTCTTTGAGGAC-A-AA-GGAAAAGAAGGAAATGAAGAG
*
21342 CGTCCTACTCTTTGAGGACAAAGGAGAAA-AAGGAAAACGAA-ATG
1 CGTCCTACTCTTTGAGGACAAAGGA-AAAGAAGG-AAATGAAGA-G
* * * *
21386 CGTCCTGCTCTTTGAGGACAAA-AAAAAGAAGGAAATAAAGTG
1 CGTCCTACTCTTTGAGGACAAAGGAAAAGAAGGAAATGAAGAG
* * *
21428 CGTCCTACTCTTTAAGGGAAAAAGTGAAAAGAAGGAAATGAAGTG
1 CGTCCTACTCTTTGA-GGACAAAG-GAAAAGAAGGAAATGAAGAG
*
21473 CGTCCTACTCTTTAAGGACAA
1 CGTCCTACTCTTTGAGGACAA
21494 GGGGGAAGAG
Statistics
Matches: 169, Mismatches: 16, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
42 36 0.21
43 23 0.14
44 40 0.24
45 34 0.20
46 36 0.21
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (43 bp):
CGTCCTACTCTTTGAGGACAAAGGAAAAGAAGGAAATGAAGAG
Found at i:21472 original size:45 final size:45
Alignment explanation
Indices: 21269--21493 Score: 213
Period size: 45 Copynumber: 5.1 Consensus size: 45
21259 TGCTTTTCGA
* * *
21269 GGAC-AAA-GAAAAAAAGGAAATGAAGAGCGTCCTGCTCTTT--G
1 GGACAAAAGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAG
* * *
21310 CGGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGA-
1 -GGAC-A-AAAGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAG
* * * *
21357 GGAC-AAAGGAGAAA-AAGGAAAACGAAATGCGTCCTGCTCTTTGA-
1 GGACAAAAGGA-AAAGAAGG-AAATGAAGTGCGTCCTACTCTTTAAG
*
21401 GGACAAAA--AAAAGAAGGAAATAAAGTGCGTCCTACTCTTTAAG
1 GGACAAAAGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAG
21444 GGA-AAAAGTGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAA-
1 GGACAAAAG-GAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAG
21488 GGACAA
1 GGACAA
21494 GGGGGAAGAG
Statistics
Matches: 154, Mismatches: 14, Indels: 27
0.79 0.07 0.14
Matches are distributed among these distances:
42 31 0.20
43 17 0.11
44 31 0.20
45 40 0.26
46 35 0.23
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.17
Consensus pattern (45 bp):
GGACAAAAGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAG
Found at i:21482 original size:131 final size:131
Alignment explanation
Indices: 21254--21493 Score: 344
Period size: 131 Copynumber: 1.8 Consensus size: 131
21244 AAAAAGAGTA
* * *
21254 CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATGAAGAGCGTCCTGCTCTTTGCGGACTAGA
1 CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATAAAGAGCGTCCTACTCTTTGCGGAC-AAA
*
21319 AGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGACAAAGGAGAAAAAGGAAAACGAAA
65 AGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTAAGGACAAAGGAGAAAAAGGAAAACGAAA
21384 TG
130 TG
*
21386 CGTCCTGCTCTTT-GAGGACAAA-AAAAAGAAGGAAATAAAGTGCGTCCTACTCTTTAAG-GGA-
1 CGTCCTGCT-TTTCGAGGACAAAGAAAAA-AAGGAAATAAAGAGCGTCCTACTCTTT--GCGGAC
* *
21447 AAAAGTGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTAAGGACAA
62 AAAAGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTAAGGACAA
21494 GGGGGAAGAG
Statistics
Matches: 97, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
131 48 0.49
132 42 0.43
133 6 0.06
134 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (131 bp):
CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAATAAAGAGCGTCCTACTCTTTGCGGACAAAA
GGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTAAGGACAAAGGAGAAAAAGGAAAACGAAAT
G
Found at i:21586 original size:61 final size:61
Alignment explanation
Indices: 21513--21681 Score: 241
Period size: 61 Copynumber: 2.8 Consensus size: 61
21503 GGAAAAGCCA
* * * *
21513 TCCTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAAAG-CG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAAAAAGACG
* *
21574 TCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACG
* * *
21635 TCCAGCTCTTCGAGGGCTAAAAGGTGCCACCAACTTGTGTGGGCTTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
21682 TTGGGTGTTG
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
60 10 0.10
61 86 0.90
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGACG
Found at i:22005 original size:43 final size:41
Alignment explanation
Indices: 21968--22051 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 41
21958 AGGACAGTGG
*
21968 AGAAA-AGGAAAACAAAATGCTTCCTGCTCTTTGAGGACAAA
1 AGAAAGAGGAAAACAAAATGCATCCTGCTC-TTGAGGACAAA
* *
22009 AGAAAGAGGAAAATAAAGTGCATCCTGCTCTTGAGGACAAA
1 AGAAAGAGGAAAACAAAATGCATCCTGCTCTTGAGGACAAA
22050 AG
1 AG
22052 GGAAAAGAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
41 18 0.46
42 21 0.54
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (41 bp):
AGAAAGAGGAAAACAAAATGCATCCTGCTCTTGAGGACAAA
Found at i:22087 original size:44 final size:42
Alignment explanation
Indices: 21968--22092 Score: 141
Period size: 44 Copynumber: 3.0 Consensus size: 42
21958 AGGACAGTGG
* * *
21968 AGAAA-AGGAAAACAAAATGCTTCCTGCTCTTTGAGGACAAA
1 AGAAAGAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAA
22009 AGAAAGAGGAAAATAAAGTGCATCCTGCTC-TTGAGGACAAA
1 AGAAAGAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAA
* *
22050 AGGGAAAAGAAGG-AAATGAAGTGCGTCCT-CTCTTTGAGGACAA
1 A--G-AAAG-AGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAA
22093 GGGGGAAGAG
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
41 17 0.23
42 21 0.29
43 4 0.05
44 28 0.38
45 3 0.04
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.18
Consensus pattern (42 bp):
AGAAAGAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAA
Found at i:22181 original size:60 final size:60
Alignment explanation
Indices: 22114--22308 Score: 241
Period size: 60 Copynumber: 3.2 Consensus size: 60
22104 ATAAGGCATG
* * * *
22114 CTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAATAAAAGGCGTC
1 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGACGTC
* * * *
22174 CTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTC
1 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-AAAAAGACGTC
* * * *
22235 TTGCT-TTTGAGGACTAAAAGGTGCCACCAATTTATGTGGGCTTTGAAAGAAAAAGATGT-
1 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-AAAAAGACGTC
22294 CTCGCTCTTTGAGGA
1 CT-GCTCTTTGAGGA
22309 TTGGAAGGTG
Statistics
Matches: 115, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
59 1 0.01
60 93 0.81
61 21 0.18
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (60 bp):
CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGACGTC
Found at i:22920 original size:46 final size:44
Alignment explanation
Indices: 22864--23110 Score: 234
Period size: 46 Copynumber: 5.5 Consensus size: 44
22854 AAATAAATGT
*
22864 GTCCTGCTCTTTGAGGACTAGAAGGGAAAAGAAGGAAATGAAGAGC
1 GTCCTACTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAGC
*
22910 GTCCTACTCTTTGCGGACTAGAAGGGAAAAGAAGGAAATGAAGAGC
1 GTCCTACTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAGC
* * *
22956 GTCCGACTCTTTGAGGACAAAGGAGAAAAG--GAAAACGAA-ATGC
1 GTCCTACTCTTTGAGGACAAAGG-GAAAAGAAGGAAATGAAGA-GC
* ** * *
22999 GTCCTGCTCTTTGAGGACAAAAAG-AAAG-AGGAAAATAAAGTGC
1 GTCCTACTCTTTGAGGACAAAGGGAAAAGAAGG-AAATGAAGAGC
** * * * * *
23042 ACCCTGCTCTTTGAGGGAAAAAGTGAAAAGATGGAAATGAAGTGC
1 GTCCTACTCTTTGA-GGACAAAGGGAAAAGAAGGAAATGAAGAGC
23087 GTCCTACTCTTTGAGGACAAAGGG
1 GTCCTACTCTTTGAGGACAAAGGG
23111 GAAGTGGAAA
Statistics
Matches: 167, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
41 4 0.02
42 3 0.02
43 47 0.28
44 19 0.11
45 32 0.19
46 62 0.37
ACGTcount: A:0.38, C:0.15, G:0.29, T:0.18
Consensus pattern (44 bp):
GTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGAGC
Found at i:23197 original size:61 final size:61
Alignment explanation
Indices: 23117--23467 Score: 327
Period size: 61 Copynumber: 5.7 Consensus size: 61
23107 AGGGGAAGTG
* *
23117 GAAAAGCCGTCCT-GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAA
1 GAAAAGACGT-CTAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAA
* * * * *
23178 GAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTG-AAA
1 GAAAAGACGTCTAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAA
*
23238 GAAAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGA-GGGCTTTGAAAA
1 G-AAAAGACGTCTAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT-ATGGGCTTTGAAAA
* * * * * ** * ** *
23300 GAAAAGGCGT-TCGGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGCCTGCGCGAT-AAGA
1 GAAAAGACGTCT-AGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAA
* * * *
23360 GAAAAAGACGTTCTACCACTTTGAGCACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGAA
1 G-AAAAGACG-TCTAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTG-AA-AA
* * **
23425 AAAAAGATGTCCTA-CTCTTTGAGGACTGGAAGGTTGCCACCAA
1 GAAAAGACGT-CTAGCTCTTTGAGGACTAAAAGG-TGCCACCAA
23468 TTCATCCCCA
Statistics
Matches: 233, Mismatches: 43, Indels: 25
0.77 0.14 0.08
Matches are distributed among these distances:
60 10 0.04
61 147 0.63
62 37 0.16
63 17 0.07
64 21 0.09
65 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (61 bp):
GAAAAGACGTCTAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAA
Found at i:23260 original size:122 final size:122
Alignment explanation
Indices: 23118--23426 Score: 401
Period size: 122 Copynumber: 2.5 Consensus size: 122
23108 GGGGAAGTGG
* * *
23118 AAAAGCCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAA
1 AAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAA
* * * ** * **
23183 GGCG-TCTTGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAA-AGA
66 GGCGTTC-GGCTCTTTGAGGACTAAAAGCTGCCACCAACTTGCCTGCGCGAT-AAGAGA
23240 AAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGA-GGGCTTTGAAAAGAAA
1 AAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT-ATGGGCTTTGAAAAGAAA
*
23304 AGGCGTTCGGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGCCTGCGCGATAAGAGA
65 AGGCGTTCGGCTCTTTGAGGACTAAAAGCTGCCACCAACTTGCCTGCGCGATAAGAGA
* * * * *
23362 AAAAGACGTTCTACCACTTTGAGCACTAAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAAGAAA
1 AAAAGACG-TCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAAGAAA
23426 A
65 A
23427 AAAGATGTCC
Statistics
Matches: 165, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
121 2 0.01
122 118 0.72
123 45 0.27
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (122 bp):
AAAAGACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAA
GGCGTTCGGCTCTTTGAGGACTAAAAGCTGCCACCAACTTGCCTGCGCGATAAGAGA
Found at i:23902 original size:45 final size:44
Alignment explanation
Indices: 23805--23920 Score: 116
Period size: 45 Copynumber: 2.7 Consensus size: 44
23795 TGCGTCCAAA
23805 TCTTTGAGGACAAAA--GAAAG-AGGAAAATAAAGTGTGTCCTGC
1 TCTTTGAGGACAAAAGGGAAAGAAGG-AAATAAAGTGTGTCCTGC
* *
23847 AC-TTGAGGACAAAAGGGAAAGGAAGGAAATGAAGTGTGT-CTCGC
1 TCTTTGAGGACAAAAGGGAAA-GAAGGAAATAAAGTGTGTCCT-GC
* **
23891 TCTTTGTGGACAAGCGGGAGAAGAAGGAAA
1 TCTTTGAGGACAAAAGGGA-AAGAAGGAAA
23921 AGGCATCCTG
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
41 12 0.20
42 1 0.02
43 6 0.10
44 16 0.26
45 24 0.39
46 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.32, T:0.18
Consensus pattern (44 bp):
TCTTTGAGGACAAAAGGGAAAGAAGGAAATAAAGTGTGTCCTGC
Found at i:24675 original size:38 final size:39
Alignment explanation
Indices: 24576--24675 Score: 107
Period size: 38 Copynumber: 2.5 Consensus size: 39
24566 GGTCTCGCTC
*
24576 CTTGAGGACAAAGGAAAAAATAAAAGGAAAGTGTCCTGCTT
1 CTTGAGGACAAA-GAAAAAA-AAAAGGAAAGCGTCCTGCTT
***
24617 CTTGAGGACAAAGTTGAAAAAAA-GAACA-CGTCCTGCTT
1 CTTGAGGACAAAGAAAAAAAAAAGGAA-AGCGTCCTGCTT
24655 -TTCGAGGACAAAGAAAAAAAA
1 CTT-GAGGACAAAGAAAAAAAA
24676 TGAAAATGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
37 2 0.04
38 27 0.54
39 5 0.10
40 4 0.08
41 12 0.24
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.18
Consensus pattern (39 bp):
CTTGAGGACAAAGAAAAAAAAAAGGAAAGCGTCCTGCTT
Found at i:24804 original size:40 final size:42
Alignment explanation
Indices: 24760--24843 Score: 102
Period size: 41 Copynumber: 2.0 Consensus size: 42
24750 AGGATAAAGG
* *
24760 AGAAA-AGGAAAACGAAA-TGCGTCCTGCACTTTGA-GACAAA
1 AGAAAGAGGAAAA-GAAAGTGCGCCCTACACTTTGAGGACAAA
* *
24800 AGAAAGAGGAAAATAAAGTGCGCCCTACTCTTTGAGGACAAA
1 AGAAAGAGGAAAAGAAAGTGCGCCCTACACTTTGAGGACAAA
24842 AG
1 AG
24844 GGAAAAGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
40 8 0.22
41 21 0.57
42 8 0.22
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (42 bp):
AGAAAGAGGAAAAGAAAGTGCGCCCTACACTTTGAGGACAAA
Found at i:25099 original size:61 final size:59
Alignment explanation
Indices: 24906--25105 Score: 154
Period size: 61 Copynumber: 3.3 Consensus size: 59
24896 GGACAGGGCA
* * * **
24906 TCCTGCACTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGC-G
1 TCCTGCTCTTTAGGACT-AAAAGTGCCACCAACTCATGTGGGCTTTG-AAAGAAAAAACAG
* * * * * *
24966 TCCTGCTCTTTTGAGGACTAAAAGTGACA-CTACCCTTGCGCGGGGCTCTTAAAAGAAAAAGACA
1 TCCTGCTC-TTT-AGGACTAAAAGTGCCACCAACTCAT--G-TGGGCT-TTGAAAGAAAAA-ACA
25030 -
59 G
*
25030 TCCTGCTCTTTAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAATATG
1 TCCTGCTCTTTAGGACTAAAA-GTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAACA-G
* *
25091 TCCCGCTCTTGAGGA
1 TCCTGCTCTTTAGGA
25106 TTGGAAGGTG
Statistics
Matches: 109, Mismatches: 19, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
59 2 0.02
60 23 0.21
61 29 0.27
62 18 0.17
63 21 0.19
64 16 0.15
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (59 bp):
TCCTGCTCTTTAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAACAG
Found at i:26072 original size:46 final size:43
Alignment explanation
Indices: 26001--26240 Score: 181
Period size: 42 Copynumber: 5.5 Consensus size: 43
25991 AAAAAGAACA
26001 CGTCCTGCT-TTTGAGGACAAA-GAAAAAAGGAAAATGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
* *
26042 TGTCATGCTCTTTGAGGACTAGAAGGGAAAAAAAGG-AAATGAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AA-GG-AAAAAAGGAAAATGAA-ATG
* * * *
26088 CATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
* * *
26131 CGTCCTGCTCTTCGAGGACAAAAG-AAAGAGGAAAAT--AATG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
* * * * *
26171 TGTGCCCTGCTCTTTGAGGATATAAAAGAGAAAAGAAGG-GAATGAAGTA
1 CGT--CCTGCTCTTTGAGG--A-CAAAG-GAAAA-AAGGAAAATGAAATG
*
26220 CGACCTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAGGACAA
26241 GAGGGGAAGA
Statistics
Matches: 154, Mismatches: 26, Indels: 35
0.72 0.12 0.16
Matches are distributed among these distances:
40 6 0.04
41 7 0.05
42 39 0.25
43 30 0.19
44 7 0.05
45 5 0.03
46 25 0.16
47 29 0.19
48 3 0.02
49 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
Found at i:26182 original size:131 final size:131
Alignment explanation
Indices: 26001--26256 Score: 308
Period size: 132 Copynumber: 1.9 Consensus size: 131
25991 AAAAAGAACA
* * *
26001 CGTCCTGCTTTTGAGGACAAAGAAAAAAGGAAAATGAAATGTGTCATGCTCTTTGAGGA-CTAGA
1 CGTCCTGCTTTCGAGGACAAAGAAAAAAGGAAAAT-AAATGTGTCATGCTCTTTGAGGATATAAA
*
26065 AGGGAAAAAAAGGAAATGAAG-A-GCATCCTGCTCTTTAAGGACAA-AGGAGAAAAGGAAAACGA
65 AGAGAAAAAAAGGAAATGAAGTACG-A-CCTGCTCTTTAAGGACAAGAGGAGAAAAGGAAAACGA
26127 AATG
128 AATG
* *
26131 CGTCCTGCTCTTCGAGGACAAA-AGAAAGAGGAAAAT-AATGTGTGCCCTGCTCTTTGAGGATAT
1 CGTCCTGCT-TTCGAGGACAAAGA-AAAAAGGAAAATAAATGTGT--CATGCTCTTTGAGGATAT
* * * * *
26194 AAAAGAGAAAAGAAGGGAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGGAAGAGGAAAA
62 AAAAGAGAAAAAAAGGAAATGAAGTACGACCTGCTCTTTAAGGACAAGAGGAGAAAAGGAAAA
26257 GGCATGCTGC
Statistics
Matches: 107, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
129 7 0.07
130 10 0.09
131 36 0.34
132 38 0.36
133 15 0.14
134 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.18
Consensus pattern (131 bp):
CGTCCTGCTTTCGAGGACAAAGAAAAAAGGAAAATAAATGTGTCATGCTCTTTGAGGATATAAAA
GAGAAAAAAAGGAAATGAAGTACGACCTGCTCTTTAAGGACAAGAGGAGAAAAGGAAAACGAAAT
G
Found at i:26340 original size:60 final size:61
Alignment explanation
Indices: 26263--26475 Score: 270
Period size: 61 Copynumber: 3.5 Consensus size: 61
26253 AAAAGGCATG
* *
26263 CTGCTCTTTGAGGACTAAAAAGTG-CACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTC
1 CTGCTCTTTGAGGACTAAAAGGTGACACCAACTTGTGTGGGCTTTGAAAAGAAAAGACGTC
* *
26323 CTGCTCTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTT-AAAAGAGAAAGACGTC
1 CTGCTCTTTGAGGACTAAAAGGTGACACCAACTTGTGTGGGCTTTGAAAAGA-AAAGACGTC
* ** *
26384 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTG-AAAGAAAAAGATGTC
1 CTGCTCTTTGAGGACTAAAAGGTGACACCAACTTGTGTGGGCTTTGAAAAG-AAAAGACGTC
** ** *
26445 CCACTCTTTGAGGACTGGAAGGTGCCACCAA
1 CTGCTCTTTGAGGACTAAAAGGTGACACCAA
26476 TTCGTCCCCA
Statistics
Matches: 135, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
60 29 0.21
61 105 0.78
62 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (61 bp):
CTGCTCTTTGAGGACTAAAAGGTGACACCAACTTGTGTGGGCTTTGAAAAGAAAAGACGTC
Found at i:27184 original size:44 final size:43
Alignment explanation
Indices: 27071--27191 Score: 147
Period size: 44 Copynumber: 2.8 Consensus size: 43
27061 CGAAATGCTT
* *
27071 TCCTG-CTCTTTGAGGACAAAAAGAAAGAGGAAAATAAAGTGCG
1 TCCTGCCTCTTTGAGGACAAAAGGGAAGAGG-AAATAAAGTGCG
*
27114 TCCTGCCTCTTTGAGGACAAAAGGGAACGAAGGAAATGAAGTGCG
1 TCCTGCCTCTTTGAGGACAAAAGGGAA-G-AGGAAATAAAGTGCG
* **
27159 TCCT-TCTCTTTGAGGACAAGGGGGAAGAGGAAA
1 TCCTGCCTCTTTGAGGACAAAAGGGAAGAGGAAA
27192 AGGCATGCCT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
42 6 0.09
43 6 0.09
44 38 0.55
45 16 0.23
46 3 0.04
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.19
Consensus pattern (43 bp):
TCCTGCCTCTTTGAGGACAAAAGGGAAGAGGAAATAAAGTGCG
Found at i:27300 original size:60 final size:62
Alignment explanation
Indices: 27189--27344 Score: 174
Period size: 60 Copynumber: 2.5 Consensus size: 62
27179 GGGGAAGAGG
* * * * * *
27189 AAAAGGCATGCCTGCTATTTGAGGACTAAAAAGTGCCACCAACTCGTGTGG-CTTCGAAAA-T
1 AAAAGGCGT-CCTGCTTTTTGAGGACTAAAAGGTGACACCAACTCGCGTGGCCTTCGAAAAGA
* * **
27250 AAAAGGCGTCCTGCTTTTTGAGGACTAAAAGGTGACACTAACTTGCGTGGCCTTTTAAAAGA
1 AAAAGGCGTCCTGCTTTTTGAGGACTAAAAGGTGACACCAACTCGCGTGGCCTTCGAAAAGA
* *
27312 AAAAGACGTCTTGCTTTTTGAGGACT-AAAGGTG
1 AAAAGGCGTCCTGCTTTTTGAGGACTAAAAGGTG
27345 CTACCAATTC
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
60 35 0.43
61 22 0.27
62 24 0.30
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (62 bp):
AAAAGGCGTCCTGCTTTTTGAGGACTAAAAGGTGACACCAACTCGCGTGGCCTTCGAAAAGA
Found at i:27989 original size:47 final size:43
Alignment explanation
Indices: 27933--28196 Score: 198
Period size: 47 Copynumber: 5.9 Consensus size: 43
27923 TTCGAGGACA
* *
27933 AAAAAAAGGAAAATGAAATGTGTCCTACTCTTTGAGGACTAGAAGGG
1 AAAAGAAGG-AAATGAAA-GCGTCCTACTCTTTGAGGAC-A-AAGGG
* *
27980 AAAAGAAGGAAATGAAGAGCGTCCTGCTCTTTTGCGGACTAGAAGGG
1 AAAAGAAGGAAATGAA-AGCGTCCTACTC-TTTGAGGAC-A-AAGGG
* *
28027 AAAAGAAGGAAATGAAGAGTGTCTTACTCTTTGAGGACAAAGGAG
1 AAAAGAAGGAAATGAA-AGCGTCCTACTCTTTGAGGACAAAGG-G
* * * *
28072 AAAAG--GAAAACGAAATGCGTCCTGCTCTTTGAGGACAAA-AG
1 AAAAGAAGGAAATGAAA-GCGTCCTACTCTTTGAGGACAAAGGG
** * * *
28113 -AAAG-AGGAAAAT-AAAGTGCACCCTGCTCTTTGAGGGAAAAAGTG
1 AAAAGAAGG-AAATGAAA--GCGTCCTACTCTTTGA-GGACAAAGGG
*
28157 AAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAA
1 AAAAGAAGGAAATGAA-AGCGTCCTACTCTTTGAGGACAA
28197 GGGGGAAGTG
Statistics
Matches: 179, Mismatches: 25, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
40 4 0.02
41 5 0.03
42 19 0.11
43 33 0.18
44 10 0.06
45 28 0.16
46 29 0.16
47 51 0.28
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.19
Consensus pattern (43 bp):
AAAAGAAGGAAATGAAAGCGTCCTACTCTTTGAGGACAAAGGG
Found at i:28060 original size:93 final size:91
Alignment explanation
Indices: 27933--28101 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 91
27923 TTCGAGGACA
* *
27933 AAAAAAAGGAAAATGAAATGTGTCCTACTCTTTGAGGACTAGAAGG-GAAAAGAAGGAAATGAAG
1 AAAAAAAGGAAAATGAAATGTGTCCTACTCTTTGAGGAC-A-AAGGAGAAAAG--GAAAACGAA-
27997 A-GCGTCCTGCTCTTTTGCGGACTAGAAGGG
61 ATGCGTCCTGCTCTTTTGCGGACTAGAAGGG
* *
28027 AAAAGAAGG-AAATGAAGA-GTGTCTTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAATGC
1 AAAAAAAGGAAAATGAA-ATGTGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAATGC
28090 GTCCTGCTCTTT
65 GTCCTGCTCTTT
28102 GAGGACAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
89 1 0.01
90 21 0.31
91 4 0.06
92 7 0.10
93 26 0.38
94 9 0.13
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (91 bp):
AAAAAAAGGAAAATGAAATGTGTCCTACTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAATGCG
TCCTGCTCTTTTGCGGACTAGAAGGG
Found at i:28415 original size:61 final size:60
Alignment explanation
Indices: 28211--28552 Score: 261
Period size: 60 Copynumber: 5.6 Consensus size: 60
28201 GAAGTGGAAA
* * * ** *
28211 GCGTCCTGCTTCTTTGAGGACTAAAAAGTGCCACCAACTCGT-ATGGGATTGAAAAGAAATG
1 GCGTCCAGC-TCTTTGAGGACTAAAAGGTGCCACCAACTTGTGA-GGCTTTGAAAAGAAAAG
**
28272 GCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCCCAACTTGCGTG-GGCTTTG-AAAGAAAAAG
1 GCGTCCAGCTCTTTGAGGACTAAAAGGTGCCA--CCAACTT--GTGAGGCTTTGAAAAG-AAAAG
*
28335 ACGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGAGGCTTTGAAAAGAAAAG
1 GCGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGAGGCTTTGAAAAGAAAAG
* * * * * *
28395 GCGTCCAGCTCTTTTTAGGACTGAAAGCTACCACCAACTTGCCTG-CGCGTT-AAAAGAAAAAG
1 GCGTCCAGCTC-TTTGAGGACTAAAAGGTGCCACCAACTTG--TGAGGCTTTGAAAAG-AAAAG
* * * * *
28457 ACGTCTACCAC-TTGAGCACTAAAAGGTGCCACCAACTCGTGTG-GGCTTTG-AAAGAAAAAG
1 GCGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACT--TGTGAGGCTTTGAAAAG-AAAAG
** * **
28517 ATGTCCTA-CTCTTTGAAGACTGGAAGGTGCCACCAA
1 GCGTCC-AGCTCTTTGAGGACTAAAAGGTGCCACCAA
28553 TTCATCCCCA
Statistics
Matches: 230, Mismatches: 34, Indels: 34
0.77 0.11 0.11
Matches are distributed among these distances:
59 3 0.01
60 87 0.38
61 70 0.30
62 28 0.12
63 40 0.17
64 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.23
Consensus pattern (60 bp):
GCGTCCAGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGAGGCTTTGAAAAGAAAAG
Found at i:28530 original size:122 final size:122
Alignment explanation
Indices: 28222--28514 Score: 308
Period size: 123 Copynumber: 2.4 Consensus size: 122
28212 CGTCCTGCTT
* * * ** * * **
28222 CTTTGAGGACTAAAAAGTGCCACCAACTCGT-ATGGGATTGAAAAGAAATGGCGTCTTGCTC-TT
1 CTTTGAGCACTAAAAGGTGCCACCAACTTGTGA-GGCTTTGAAAAGAAAAGACGTCCAGCTCTTT
* * * * * * * * * *
28285 TGAGGACTAAAAGGTGCCACCCCAACTTGCGTGGGCTTTGAAAGAAAAAGACGTCCAGCT
65 TTAGGACTGAAAGCTACCA--CCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCACCA
* *
28345 CTTTGAGGACTAAAAGGTGCCACCAACTTGTGAGGCTTTGAAAAGAAAAGGCGTCCAGCTCTTTT
1 CTTTGAGCACTAAAAGGTGCCACCAACTTGTGAGGCTTTGAAAAGAAAAGACGTCCAGCTCTTTT
*
28410 TAGGACTGAAAGCTACCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCTACCA
66 TAGGACTGAAAGCTACCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCACCA
28467 C-TTGAGCACTAAAAGGTGCCACCAACTCGTGTG-GGCTTTG-AAAGAAAA
1 CTTTGAGCACTAAAAGGTGCCACCAACT--TGTGAGGCTTTGAAAAGAAAA
28515 AGATGTCCTA
Statistics
Matches: 147, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
121 33 0.22
122 40 0.27
123 56 0.38
124 18 0.12
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (122 bp):
CTTTGAGCACTAAAAGGTGCCACCAACTTGTGAGGCTTTGAAAAGAAAAGACGTCCAGCTCTTTT
TAGGACTGAAAGCTACCACCAACTTGCCTGCGCGTTAAAAGAAAAAGACGTCCACCA
Found at i:29219 original size:61 final size:60
Alignment explanation
Indices: 29010--29230 Score: 244
Period size: 61 Copynumber: 3.6 Consensus size: 60
29000 GGAAAGGGCA
* * * *
29010 TCCTGCACTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
1 TCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAGA-AAAAGACG
* * * * *** * *
29071 TCCTGCTCTTTGAGGACTAAAAGGTGACACTACCTTGCGCGGGCTTTAAAAGAAAAAGACG
1 TCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTT-GAAGAAAAAGACG
* *
29132 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGGAAGAAAAAGATG
1 TCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTT-GAAGAAAAAGACG
* * * *
29193 TCCCGCACTTTGAGGACTAGAAGGTGCCTCCAATTCAT
1 TCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTCAT
29231 CCCCATACCT
Statistics
Matches: 133, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
61 130 0.98
62 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (60 bp):
TCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAGAAAAAGACG
Found at i:29772 original size:43 final size:43
Alignment explanation
Indices: 29723--29962 Score: 197
Period size: 43 Copynumber: 5.5 Consensus size: 43
29713 GAAAAGAACA
29723 CGTCCTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAATGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAGAAAAAAAGGAAAATGAAATG
*
29766 TGTCCTGCTCTTTGAGGACTAGAAGGGAAAAAAAGG-AAATGAAGA-G
1 CGTCCTGCTCTTTGAGGAC-A-AA--GAAAAAAAGGAAAATGAA-ATG
* * * * *
29812 CATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAATGAAATG
* * *
29855 CGTCCTGCTCTTCGAGGACAAA-AGAAAGAGGAAAAT-AAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAATGAAA-TG
* * * * *
29897 CG-CCTTGCTCTTTGAGGATAAAAGGGAAAAGAAGG-GAATGAAGTA
1 CGTCC-TGCTCTTTGAGGA-CAAA--GAAAAAAAGGAAAATGAAATG
*
29942 CGACCTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAGGACAA
29963 GAGGGAAGAG
Statistics
Matches: 157, Mismatches: 24, Indels: 31
0.74 0.11 0.15
Matches are distributed among these distances:
41 5 0.03
42 34 0.22
43 43 0.27
44 8 0.05
45 22 0.14
46 34 0.22
47 11 0.07
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.19
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAATGAAATG
Found at i:29939 original size:130 final size:132
Alignment explanation
Indices: 29723--29977 Score: 335
Period size: 130 Copynumber: 1.9 Consensus size: 132
29713 GAAAAGAACA
* * *
29723 CGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAG
1 CGTCCTGCTCTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGGCCTGCTCTTTGAGGACTAA
29788 AAGGGAAAAAAAGGAAATGAAG-A-GCATCCTGCTCTTTAAGGACAA-AGGAGAAAAGGAAAACG
66 AAGGGAAAAAAAGGAAATGAAGTACG-A-CCTGCTCTTTAAGGACAAGAGG-GAAAAGGAAAACG
29850 AAATG
128 AAATG
* *
29855 CGTCCTGCTCTTCGAGGACAAA-AGAAAGAGGAAAAT-AAA-GTGCGCCTTGCTCTTTGAGGA-T
1 CGTCCTGCTCTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTG-GCC-TGCTCTTTGAGGACT
* * * *
29916 AAAAGGGAAAAGAAGGGAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAA
64 AAAAGGGAAAAAAAGGAAATGAAGTACGACCTGCTCTTTAAGGACAAGAGGGAAAAGGAAAA
29978 GGCATGCTGC
Statistics
Matches: 109, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
129 3 0.03
130 54 0.50
131 30 0.28
132 22 0.20
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.18
Consensus pattern (132 bp):
CGTCCTGCTCTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGGCCTGCTCTTTGAGGACTAA
AAGGGAAAAAAAGGAAATGAAGTACGACCTGCTCTTTAAGGACAAGAGGGAAAAGGAAAACGAAA
TG
Found at i:29951 original size:45 final size:45
Alignment explanation
Indices: 29769--29969 Score: 152
Period size: 45 Copynumber: 4.6 Consensus size: 45
29759 TGAAATGTGT
* *
29769 CCTGCTCTTTGAGGACTAGAAGGGAAAAAAAGGAAATGAAG-A-GCA
1 CCTGCTCTTTGAGGAC-AAAAGGGAAAAGAAGGAAATGAAGTACG-A
* * * * * *
29814 TCCTGCTCTTTAAGGAC-AAAGGAGAAAAG--GAAAACGAAATGCGT
1 -CCTGCTCTTTGAGGACAAAAGG-GAAAAGAAGGAAATGAAGTACGA
* * *
29858 CCTGCTCTTCGAGGACAAAA--G-AAAG-AGGAAAATAAAGTGCG-
1 CCTGCTCTTTGAGGACAAAAGGGAAAAGAAGG-AAATGAAGTACGA
* *
29899 CCTTGCTCTTTGAGGATAAAAGGGAAAAGAAGGGAATGAAGTACGA
1 CC-TGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACGA
*
29945 CCTGCTCTTTGAGGACAAGAGGGAA
1 CCTGCTCTTTGAGGACAAAAGGGAA
29970 GAGGAAAAGG
Statistics
Matches: 122, Mismatches: 21, Indels: 25
0.73 0.12 0.15
Matches are distributed among these distances:
40 4 0.03
41 4 0.03
42 25 0.20
43 21 0.17
44 8 0.07
45 40 0.33
46 20 0.16
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.17
Consensus pattern (45 bp):
CCTGCTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTACGA
Found at i:30078 original size:61 final size:61
Alignment explanation
Indices: 29984--30179 Score: 222
Period size: 61 Copynumber: 3.2 Consensus size: 61
29974 AAAAGGCATG
* *
29984 CTGCTTTTTGAGGACTAAAAA-GTGCCACCAACTTATGTGGGCTTTGAAACG-AAAAGGCGTC
1 CTGCTCTTTGAGGAC-AAAAAGGTGCCACCAACTTATGTGGGCTTTGAAA-GAAAAAGACGTC
* * ** * *
30045 CTGCTCTTTGAGGACAAAAAGGTGACACTAACTTGCGTGAGCTTTAAAAGAAAAAGACGTC
1 CTGCTCTTTGAGGACAAAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGAAAAAGACGTC
* * *
30106 C-GCTC-TTGAGGACCTAAAAGG-GCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTC
1 CTGCTCTTTGAGGA-CAAAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGAAAAAGACGTC
*
30165 CCGCTCTTTGAGGAC
1 CTGCTCTTTGAGGAC
30180 TGGAAGGTTG
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
59 38 0.34
60 22 0.19
61 53 0.47
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (61 bp):
CTGCTCTTTGAGGACAAAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGAAAAAGACGTC
Found at i:30631 original size:41 final size:40
Alignment explanation
Indices: 30584--30682 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 40
30574 TCCCACTTTT
30584 TGAGGACAAAGGAAAATAA-AAATGAAATAG-GT-CTCGCTCCG
1 TGAGGACAAAGGAAAA-AAGAAA-GAAA-AGTGTCCT-GCTCCG
* * *
30625 TGAGGACAAAGCAAAAAAGAAAGAAAAGTGTCCTGCTTCT
1 TGAGGACAAAGGAAAAAAGAAAGAAAAGTGTCCTGCTCCG
30665 TGAGGACAAAGTGAAAAA
1 TGAGGACAAAG-GAAAAA
30683 GAACACGTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
39 2 0.04
40 23 0.46
41 25 0.50
ACGTcount: A:0.46, C:0.13, G:0.24, T:0.16
Consensus pattern (40 bp):
TGAGGACAAAGGAAAAAAGAAAGAAAAGTGTCCTGCTCCG
Found at i:30675 original size:40 final size:41
Alignment explanation
Indices: 30583--30685 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 41
30573 GTCCCACTTT
*
30583 TTGAGGACAAAGGAAAATAA-AAATGAAATAGGTCTCGCTCC
1 TTGAGGACAAAGCAAAA-AAGAAATGAAATAGGTCTCGCTCC
* *
30624 GTGAGGACAAAGCAAAAAAGAAA-GAAA-AGTGTC-CTGCTTC
1 TTGAGGACAAAGCAAAAAAGAAATGAAATAG-GTCTC-GCTCC
**
30664 TTGAGGACAAAGTGAAAAAGAA
1 TTGAGGACAAAGCAAAAAAGAA
30686 CACGTCCTGC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
39 3 0.06
40 32 0.60
41 18 0.34
ACGTcount: A:0.47, C:0.13, G:0.24, T:0.17
Consensus pattern (41 bp):
TTGAGGACAAAGCAAAAAAGAAATGAAATAGGTCTCGCTCC
Found at i:30870 original size:42 final size:42
Alignment explanation
Indices: 30798--30939 Score: 146
Period size: 44 Copynumber: 3.3 Consensus size: 42
30788 AGGACAGTGG
* * *
30798 AGAAA-AGGAAAACGAAA-TGCTTCCTGCTCTTTGAGGACAAA
1 AGAAAGAGGAAAA-TAAAGTGCGTCCTTCTCTTTGAGGACAAA
*
30839 AGAAAGAGGAAAATAAAGTGCGTCCTTCTCTTTCAGGACAAA
1 AGAAAGAGGAAAATAAAGTGCGTCCTTCTCTTTGAGGACAAA
*
30881 AGGGAAAAGAGG-AAATGAAGTGCGTCCTTCTCTTTGAGGAACAAA
1 A--G-AAAGAGGAAAATAAAGTGCGTCCTTCTCTTTGAGG-ACAAA
* *
30926 GGGGAAGAGGAAAA
1 -AGAAAGAGGAAAA
30940 GGCATGCTGC
Statistics
Matches: 85, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
41 8 0.09
42 29 0.34
43 6 0.07
44 30 0.35
45 12 0.14
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (42 bp):
AGAAAGAGGAAAATAAAGTGCGTCCTTCTCTTTGAGGACAAA
Found at i:30925 original size:45 final size:43
Alignment explanation
Indices: 30819--30938 Score: 156
Period size: 44 Copynumber: 2.8 Consensus size: 43
30809 ACGAAATGCT
*
30819 TCCTGCTCTTTGAGGACAAAA--GAAAGAGGAAAATAAAGTGCG
1 TCCTTCTCTTTGAGGACAAAAGGGAAAGAGG-AAATAAAGTGCG
* *
30861 TCCTTCTCTTTCAGGACAAAAGGGAAAAGAGGAAATGAAGTGCG
1 TCCTTCTCTTTGAGGACAAAAGGG-AAAGAGGAAATAAAGTGCG
*
30905 TCCTTCTCTTTGAGGA-ACAAAGGGGAAGAGGAAA
1 TCCTTCTCTTTGAGGACA-AAAGGGAAAGAGGAAA
30939 AGGCATGCTG
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
42 19 0.28
43 10 0.14
44 33 0.48
45 7 0.10
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.20
Consensus pattern (43 bp):
TCCTTCTCTTTGAGGACAAAAGGGAAAGAGGAAATAAAGTGCG
Found at i:31003 original size:962 final size:965
Alignment explanation
Indices: 28757--31747 Score: 4577
Period size: 962 Copynumber: 3.1 Consensus size: 965
28747 GAGTACATCT
* * * *
28757 TGCTTTTCGAGGACAAAGAAAAACAA-GAAAACGAAGTATGTCCGGCTCTTTGAGGTCTAGAAGG
1 TGCTTTTCGAGGACAAAGAAAAA-AAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGG
* * * * *
28821 GAAAAAAAGG-AATGAAGAGCGTCTTGCTTTTTAAGAACAATGGAGAAAAGGAAAATGAAATGCG
65 GAAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAATGGAGAAAAGGAAAACGAAATGCG
** * * * *
28885 TCCAACACTTTGAGGATAAAAGAAAGAGGAAAATAAGGTGCGCCCTACTCTTTGAGGACAAAAGG
130 TCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCG-CCTTCTCTTTGAGGACAAAAGG
* * * *
28950 GAAAAGAAGGAAATGAAATATGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAGGGCATCCTG
194 GAAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGCTG
*
29015 CACTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCT
259 CTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCT
* *
29080 TTGAGGACTAAAAGGTGACACTACCTTGCGCGGGCTTTAAAAGAAAAAGACGTCCTGCTCTTTGA
324 TTGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCC-GCTC-TTGA
* *
29145 GGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGGAAGAAAAAGATGTCCCGCACTTTGAGGAC
387 GGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGAC
*
29210 TAGAAGGTGCC-TCCAATTCATCCCCATACCTTTCAACCCCTCCATCTAGTAATGCTTTGGGTTA
452 TGGAAGGTGCCATCCAATTCATCCCCATACCTTTCAACCCCTCCATCTAGTAATGCTTTGGGTTA
* * *
29274 CCGAAAAATTAACCCGAACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCTGTTTCTGAGTAT
517 CCGAAAAATTAA-CCGGACAAAATGAGGTGTCTACAGCTGGCCCTCTTTGGCTGTTTCTGAGTAT
*
29339 CAGGAATAGGGCAAAAAACAAAAGACACCATTTTGTCCCTGAAGGAAAAAAAAGAATGCTTAGCT
581 CAGGAATAGGGC-AAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGCTTAGCT
* *
29404 AAATGCATGTAAAAGGACGACATTCAAAATTTGTTTTTTGATTTTATGGTTCTCCCTACTAGGTT
645 AAATGCATGTAAAAGGACGACATTC-AAATTTTTTTTTTGATTTTATGGTTTTCCCTACTAGGTT
*
29469 TTGAAATTTTCTAAAGCTTGACCTCCTTAGATAGGTCT-TGGTTACTGTAGGCTTTGGAAAGGTT
709 TTGAAATTTTCTAAAGCTTGACCTCCTTAGATA-GT-TGTGGTTACTGTAGGCTTTGGAAAGCTT
* *
29533 TGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCATACTTTAGGAAGGGAAATAA
772 TGCCACCAATTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAAACTTTAGG-AGGGAAATAA
*
29598 ATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAATGAAATAGGTCTCGCTCCGTGA
836 ATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAATAAAATGAAATAGGTCTCGCTCCGTGA
* *
29663 GGACAAGGGAAAAAAGAAAAGGAAAGTGTCCTACTTCTTGAGGACAAAGTG-AAAAGAACACGTC
901 GGACAAAGGAAAAAAG-AAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTC
29727 C
965 C
*
29728 TGCTTTTCGAGGACAAAGAAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
1 TGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
*
29793 AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAAAGGAGAAAAGGAAAACGAAATGCGT
66 AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAATGGAGAAAAGGAAAACGAAATGCGT
* *
29858 CCTGCTCTTCGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCTTGCTCTTTGAGGATAAAAGGG
131 CCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCTT-CTCTTTGAGGACAAAAGGG
*
29923 AAAAGAAGGGAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGCTGC
195 AAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGCTGC
* ** *
29988 TTTTTGAGGACTAAAAAGTGCCACCAACTTATGTGGGCTTTGAAACGAAAAGGCGTCCTGCTCTT
260 TCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTT
* *
30053 TGAGGACAAAAAGGTGACACTAACTTGCGTGAGCTTTAAAAGAAAAAGACGTCCGCTCTTGAGGA
325 TGAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCGCTCTTGAGGA
30118 CCTAAAAGG-GCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGACTG
390 -CTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGACTG
* * *
30182 GAAGGTTGCCATCCAATTCGTCCCTATACCTTTCAAGCCCTCCATCTAGTAATGC-TTGGGTTA-
454 GAAGG-TGCCATCCAATTCATCCCCATACCTTTCAACCCCTCCATCTAGTAATGCTTTGGGTTAC
* * *
30245 CGAAAAATTAACCGGACAAAATGAGGCGTATACAGCTGGCCCTCTTTGGCTGTTT-TGAGTATTA
518 CGAAAAATTAACCGGACAAAATGAGGTGTCTACAGCTGGCCCTCTTTGGCTGTTTCTGAGTATCA
* *
30309 GGAATAGGGCAAAAACAAAAGACACCATTTCGTCCGTGAAGG-AAAAAAAGAATTCTTAGCTAAA
583 GGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGCTTAGCTAAA
* * *
30373 TGCATGTAAACGGACGAAATTC-AATTTTTTTTTTGATTTTTATGGTTTTCCCTAATAGGTTTTG
648 TGCATGTAAAAGGACGACATTCAAATTTTTTTTTTGA-TTTTATGGTTTTCCCTACTAGGTTTTG
*
30437 ATATTTTCTAAAGCTTGGACCCTCCTTAGATATGTTGTGGTTACTGTAGGCTTTGGAAAGCTTTG
712 AAATTTTCTAAAGCTT-GA-CCTCCTTAGATA-GTTGTGGTTACTGTAGGCTTTGGAAAGCTTTG
* *
30502 CCACCAATTTGT-TTGGCTTTTTGGGTGCTGCCAACTTATGCAAACTTTAGGACGGAAATAAAT-
774 CCACCAATTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAAACTTTAGGAGGGAAATAAATG
30565 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAATAAAAATGAAATAGGTCTCGCTCCGTGAGG
839 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAT-AAAATGAAATAGGTCTCGCTCCGTGAGG
* *
30630 ACAAAGCAAAAAAGAAAGAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCC
903 ACAAAGGAAAAAAGAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCC
* *
30693 TGCTTTTCGAGGAAAAAGAAAAAAAGGAAAACGAAATGTG-CCTGCTCTTTGAGGTCTAGAAGGG
1 TGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
* * *
30757 AAAAAAAGG-AATG-AGAGCATCCTGCTCGTTAAGGACAGTGGAGAAAAGGAAAACGAAATGCTT
66 AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAATGGAGAAAAGGAAAACGAAATGCGT
*
30820 CCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGTCCTTCTCTTTCAGGACAAAAGGG
131 CCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCG-CCTTCTCTTTGAGGACAAAAGGG
* * *
30885 AAAAG-AGGAAATGAAGTGCGTCCTTCTCTTTGAGGAACAA-AGGGGAAGAGGAAAAGGCATGCT
195 AAAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGG-ACAAGA-GGGAAGAGGAAAAGGCATGCT
* *
30948 GCTCTTTGAGGACT-AAAAGTGCCACCAACTCGTGTGGGCTTCGGAAAATAAAAGGCGTCCTGCT
258 GCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTT-TGAAAAGAAAAGGCGTCCTGCT
* * *
31012 CTTTGAGGACTAAAAGGTGACACTAAACTTGAGTGGGCTTT-AAAGAAAAAGACGTCTTGCTTTT
322 CTTTGAGGACTAAAAGGTGACACT-AACTTGCGTGGGCTTTAAAAGAAAAAGACGTC-CGCTCTT
* * *
31076 GAGGACT-AAAGGTGCCACCAATTCATGTTGGC-TTGAAAGAAAAAGATGTCTCGCTCTTTGAGG
385 GAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGA-G
* * * * *
31139 GATTGCAAGGTGCCAT-CATTTCATCCCCGTACCTTTCAACCCCTCCATCTAGTAAAGCTTTGGG
449 GACTGGAAGGTGCCATCCAATTCATCCCCATACCTTTCAACCCCTCCATCTAGTAATGCTTTGGG
* *
31203 TTACCGAAAAATTAACCGGACAAAATGAGGTGTCTACAGCT-GCCCTCTTTCGCTGTTTCTGAGA
514 TTACCGAAAAATTAACCGGACAAAATGAGGTGTCTACAGCTGGCCCTCTTTGGCTGTTTCTGAGT
31267 ATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAAAGAATGCTTA
579 ATCAGGAATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGG--AAAAAAAAGAATGCTTA
31332 GCTAAATGCATGTAAAAGGACGACATTCAAAAAATTTTTTTTTTG-TTTTATGGTTTTCCCTACT
642 GCTAAATGCATGTAAAAGGACGACATTC---AAATTTTTTTTTTGATTTTATGGTTTTCCCTACT
* * *
31396 AGG-TTTGAGATTTTCTAAAGCTTGACCTCCTTAGAGAGGTGTTGGTTACTGTAGGCTTTGGAAA
704 AGGTTTTGAAATTTTCTAAAGCTTGACCTCCTTAGATAGTTG-TGGTTACTGTAGGCTTTGGAAA
*
31460 GCTTTGCCACCAATTTGTGTGGGCTTTTCGGGTGCTGCCAACTTATGCAAACTTTAGGAGGGGAA
768 GCTTTGCCACCAATTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAAACTTTAGGA-GGGAA
31525 ATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAT-AAATGAAATAGGTCTCGCTCC
832 ATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAATAAAATGAAATAGGTCTCGCTCC
* * **
31589 TTGAGGACAAAGGAAAAAAGAAAGGAAAGTGTCCTGTTTCTTGAGGACAAAGTGAAAAAGAGTAC
897 GTGAGGACAAAGGAAAAAAGAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACAC
31654 GTCC
962 GTCC
*
31658 TGCTTTTCGAGGAC----AAAAAAAGGAAAATGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
1 TGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
* *
31719 AAAAGAAGGAAATGAAGAGCGTCCTGCTC
66 AAAAAAAGGAAATGAAGAGCATCCTGCTC
31748 CTTGCGGACT
Statistics
Matches: 1855, Mismatches: 128, Indels: 81
0.90 0.06 0.04
Matches are distributed among these distances:
960 36 0.02
961 136 0.07
962 345 0.19
963 39 0.02
964 176 0.09
965 321 0.17
966 110 0.06
967 139 0.07
968 18 0.01
969 52 0.03
970 77 0.04
971 93 0.05
972 313 0.17
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (965 bp):
TGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGGG
AAAAAAAGGAAATGAAGAGCATCCTGCTCTTTAAGGACAATGGAGAAAAGGAAAACGAAATGCGT
CCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCGCCTTCTCTTTGAGGACAAAAGGGA
AAAGAAGGAAATGAAGTACGACCTGCTCTTTGAGGACAAGAGGGAAGAGGAAAAGGCATGCTGCT
CTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTT
GAGGACTAAAAGGTGACACTAACTTGCGTGGGCTTTAAAAGAAAAAGACGTCCGCTCTTGAGGAC
TAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGAAAAAGATGTCCCGCTCTTTGAGGACTGGA
AGGTGCCATCCAATTCATCCCCATACCTTTCAACCCCTCCATCTAGTAATGCTTTGGGTTACCGA
AAAATTAACCGGACAAAATGAGGTGTCTACAGCTGGCCCTCTTTGGCTGTTTCTGAGTATCAGGA
ATAGGGCAAAAACAAAAGACACCATTTTGTCCGTGAAGGAAAAAAAAGAATGCTTAGCTAAATGC
ATGTAAAAGGACGACATTCAAATTTTTTTTTTGATTTTATGGTTTTCCCTACTAGGTTTTGAAAT
TTTCTAAAGCTTGACCTCCTTAGATAGTTGTGGTTACTGTAGGCTTTGGAAAGCTTTGCCACCAA
TTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAAACTTTAGGAGGGAAATAAATGGAAGGGG
TGTCCCACTTTTTGAGGACAAAGGAAAATAAAATGAAATAGGTCTCGCTCCGTGAGGACAAAGGA
AAAAAGAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAACACGTCC
Found at i:31011 original size:61 final size:59
Alignment explanation
Indices: 30936--31138 Score: 189
Period size: 61 Copynumber: 3.4 Consensus size: 59
30926 GGGGAAGAGG
* * *
30936 AAAAGGCATGCTGCTCTTTGAGGACTAAAAGTGCCACCAACTCGTGTGGGCTTCGGAAA-A
1 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGTGCCACCAACTCGAGTGGGCTT--GAAAGA
* * * *
30996 TAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGACACTAAACTTGAGTGGGCTTTAAAGA
1 -AAAAGGCGTCCTGCTCTTTGAGGACTAAAA-GTGCCAC-CAACTCGAGTGGGCTTGAAAGA
* * * * *
31058 AAAAGACGTCTTGCT-TTTGAGGACTAAAGGTGCCACCAATTC-ATGTTGGCTTGAAAGA
1 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGTGCCACCAACTCGA-GTGGGCTTGAAAGA
**
31116 AAAAGATGT-CTCGCTCTTTGAGG
1 AAAAGGCGTCCT-GCTCTTTGAGG
31139 GATTGCAAGG
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
57 2 0.02
58 26 0.22
59 13 0.11
60 13 0.11
61 44 0.37
62 7 0.06
63 13 0.11
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (59 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGTGCCACCAACTCGAGTGGGCTTGAAAGA
Found at i:31743 original size:46 final size:44
Alignment explanation
Indices: 31693--31934 Score: 219
Period size: 46 Copynumber: 5.5 Consensus size: 44
31683 AATGAAATGT
31693 GTCCTGCTCTTTGAGGACTAGAAGGGAAAAGAAGGAAATGAAGAGC
1 GTCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAGC
* * *
31739 GTCCTGCTCCTTGCGGACTACAAGGGAAAAGAAGGAAATGAAGAGT
1 GTCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGAGC
* * * *
31785 GTCCTACTCTTTAAGGACAAAGGAGAAAAG--GAAAACGAA-ATGC
1 GTCCTGCTCTTTGAGGACAAAGG-GAAAAGAAGGAAATGAAGA-GC
* * *
31828 GTCCTGCTCTTTGAGGACAAA-AG-AAAG-AGGAAAATAAAGTGC
1 GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGG-AAATGAAGAGC
* * * *
31870 -ACCTTGCTCTTTGAGGGAAAAAGTGAAAAGAAGGAAATGAAGTGC
1 GTCC-TGCTCTTTGA-GGACAAAGGGAAAAGAAGGAAATGAAGAGC
*
31915 GTCCTACTCTTTGAGGACAA
1 GTCCTGCTCTTTGAGGACAA
31935 GGGGGACGTG
Statistics
Matches: 160, Mismatches: 25, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
40 4 0.03
41 4 0.03
42 18 0.11
43 33 0.21
44 10 0.06
45 30 0.19
46 61 0.38
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (44 bp):
GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGAGC
Done.