Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold199
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 611138
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 4 of 5
Found at i:409424 original size:19 final size:19
Alignment explanation
Indices: 409377--409424 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
409367 CTTACCGCGA
**
409377 TCTTAAAAAGCTATCAATC
1 TCTTAAAAAATTATCAATC
* *
409396 TCTTACAAAATTATCACTC
1 TCTTAAAAAATTATCAATC
*
409415 TTTTAAAAAA
1 TCTTAAAAAA
409425 ATTGCTCATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (19 bp):
TCTTAAAAAATTATCAATC
Found at i:409808 original size:7 final size:7
Alignment explanation
Indices: 409798--409822 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
409788 AAATTTTAAA
409798 AATTATT
1 AATTATT
409805 AATTATT
1 AATTATT
409812 AATTATT
1 AATTATT
409819 AATT
1 AATT
409823 TAATTTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTATT
Found at i:409815 original size:23 final size:24
Alignment explanation
Indices: 409773--409820 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
409763 TTAAGTACGG
409773 AAAATTATAAATTTTAAATT-TTA
1 AAAATTATAAATTTTAAATTATTA
*
409796 AAAATTATTAATTATT-AATTATTA
1 AAAATTATAAATT-TTAAATTATTA
409820 A
1 A
409821 TTTAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AAAATTATAAATTTTAAATTATTA
Found at i:410391 original size:19 final size:19
Alignment explanation
Indices: 410369--410412 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
410359 AAATGTTATA
410369 AAAATTAAAA-AAAATCAAC
1 AAAATTAAAACAAAAT-AAC
* *
410388 AAAATAAAAACAAAATAAT
1 AAAATTAAAACAAAATAAC
410407 AAAATT
1 AAAATT
410413 CATGTGCTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAATTAAAACAAAATAAC
Found at i:411421 original size:20 final size:20
Alignment explanation
Indices: 411398--411435 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
411388 AACTATATGA
411398 ATTGGTATGTAC-CAATATTG
1 ATTGGTAT-TACTCAATATTG
411418 ATTGGTATTACTCAATAT
1 ATTGGTATTACTCAATAT
411436 AAATTGATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (20 bp):
ATTGGTATTACTCAATATTG
Found at i:411441 original size:20 final size:20
Alignment explanation
Indices: 411392--411441 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
411382 ATTTTAAACT
*
411392 ATATGAATTGGTATGTACCA
1 ATATAAATTGGTATGTACCA
**
411412 ATATTGATTGGTAT-TACTCA
1 ATATAAATTGGTATGTAC-CA
411432 ATATAAATTG
1 ATATAAATTG
411442 ATATAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (20 bp):
ATATAAATTGGTATGTACCA
Found at i:411884 original size:21 final size:20
Alignment explanation
Indices: 411857--411897 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
411847 TATTAAAAAA
411857 TTAT-TTTTAT-ATTAATATT
1 TTATATTTTATAATTAA-ATT
411876 TTATATTTTATAATTAAATT
1 TTATATTTTATAATTAAATT
411896 TT
1 TT
411898 TTAAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 11 0.55
21 5 0.25
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATATTTTATAATTAAATT
Found at i:412255 original size:9 final size:9
Alignment explanation
Indices: 412241--412283 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
412231 GTATTAAATA
412241 TATATTAAT
1 TATATTAAT
412250 TATATTAAT
1 TATATTAAT
*
412259 TGTATTTAAT
1 TATA-TTAAT
412269 T-TATTATAT
1 TATATTA-AT
412278 TATATT
1 TATATT
412284 TTTAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 3 0.10
9 17 0.57
10 10 0.33
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (9 bp):
TATATTAAT
Found at i:412269 original size:19 final size:19
Alignment explanation
Indices: 412239--412284 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
412229 ATGTATTAAA
412239 TATATATTAATTATATTA-AT
1 TATAT-TTAATT-TATTATAT
*
412259 TGTATTTAATTTATTATAT
1 TATATTTAATTTATTATAT
412278 TATATTT
1 TATATTT
412285 TTAAATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 14 0.61
20 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATTTAATTTATTATAT
Found at i:421285 original size:21 final size:21
Alignment explanation
Indices: 421261--421329 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
421251 TTTCAAAGAT
421261 ATTTATTATTAACAAACATTA
1 ATTTATTATTAACAAACATTA
* *
421282 ATTTATTTTTCACAAACATTA
1 ATTTATTATTAACAAACATTA
* *
421303 ATTTATTATTAAAAAACACTTC
1 ATTTATTATTAACAAACA-TTA
421325 ATTTA
1 ATTTA
421330 GTCTATTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 34 0.83
22 7 0.17
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTATTATTAACAAACATTA
Found at i:423533 original size:3 final size:3
Alignment explanation
Indices: 423525--423556 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
423515 ACTTTTATCA
423525 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
423557 ATTGCATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:424796 original size:34 final size:34
Alignment explanation
Indices: 424753--424821 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
424743 CAAACCAACA
424753 GCCGCTTTAATGAATTGAAATGTTGCAGATGCAT
1 GCCGCTTTAATGAATTGAAATGTTGCAGATGCAT
424787 GCCGCTTTAATGAATTGAAATGTTGCAGATGCAT
1 GCCGCTTTAATGAATTGAAATGTTGCAGATGCAT
424821 G
1 G
424822 TGGAAAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (34 bp):
GCCGCTTTAATGAATTGAAATGTTGCAGATGCAT
Found at i:426970 original size:30 final size:30
Alignment explanation
Indices: 426936--426994 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
426926 CGTAACTAAT
*
426936 AATTTTTAATTTT-ATAAAATTATATTATTA
1 AATTTTTAATTTTAAT-AAATTAAATTATTA
*
426966 AATTTTTATTTTTAATAAATTAAATTATT
1 AATTTTTAATTTTAATAAATTAAATTATT
426995 TAAACTAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
AATTTTTAATTTTAATAAATTAAATTATTA
Found at i:429509 original size:10 final size:10
Alignment explanation
Indices: 429453--429514 Score: 53
Period size: 9 Copynumber: 6.5 Consensus size: 10
429443 ATTAATATTG
429453 TATTTATATA
1 TATTTATATA
429463 T-TTTAT-TA
1 TATTTATATA
429471 TATTGTA-ATTA
1 TATT-TATA-TA
*
429482 TATTTA-AAA
1 TATTTATATA
429491 TATTT-TATA
1 TATTTATATA
429500 TATTTATATA
1 TATTTATATA
*
429510 AATTT
1 TATTT
429515 TAATACGTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
8 3 0.07
9 20 0.47
10 14 0.33
11 6 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TATTTATATA
Found at i:429574 original size:33 final size:32
Alignment explanation
Indices: 429484--429574 Score: 100
Period size: 32 Copynumber: 2.9 Consensus size: 32
429474 TGTAATTATA
429484 TTTAAAATATTT-TATA-TAT-TTATATAAAT
1 TTTAAAATATTTATATATTATATTATATAAAT
* ** *
429513 TTTAATACGTTAATA-ATTTATATTATATAAAT
1 TTTAAAATATTTATATA-TTATATTATATAAAT
429545 TTTAAAATATTTATATATTCATATTATATA
1 TTTAAAATATTTATATATT-ATATTATATA
429575 CATATTATTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
29 9 0.19
30 2 0.04
31 3 0.06
32 23 0.48
33 11 0.23
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (32 bp):
TTTAAAATATTTATATATTATATTATATAAAT
Found at i:430058 original size:25 final size:22
Alignment explanation
Indices: 430030--430092 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 22
430020 ATCAATATTT
*
430030 TTATTAATAATTATATTTTATATAA
1 TTATTAATAA--ATAATTTAT-TAA
*
430055 TTATTTATAAATAATTTATTAA
1 TTATTAATAAATAATTTATTAA
*
430077 TTA-TAA-AAAAAATTTA
1 TTATTAATAAATAATTTA
430093 AAAAAATCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 9 0.26
21 2 0.06
22 6 0.18
23 8 0.24
25 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATTAATAAATAATTTATTAA
Found at i:430073 original size:15 final size:15
Alignment explanation
Indices: 430029--430074 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
430019 AATCAATATT
*
430029 TTTATTAATAATTATA
1 TTTATAAATAATT-TA
*
430045 TTT-TATATAA-TTA
1 TTTATAAATAATTTA
430058 TTTATAAATAATTTA
1 TTTATAAATAATTTA
430073 TT
1 TT
430075 AATTATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
13 5 0.20
14 7 0.28
15 10 0.40
16 3 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTATAAATAATTTA
Found at i:430238 original size:19 final size:20
Alignment explanation
Indices: 430205--430244 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
430195 AATATAATCT
*
430205 TTTAATATTGAATTAA-AAA
1 TTTAATATTCAATTAATAAA
*
430224 TTTAATATTCTATTAATAAA
1 TTTAATATTCAATTAATAAA
430244 T
1 T
430245 AATATAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTAATATTCAATTAATAAA
Found at i:431705 original size:2 final size:2
Alignment explanation
Indices: 431700--431737 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
431690 ACTAATTAAA
431700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
431738 CAACTTAGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:435926 original size:18 final size:17
Alignment explanation
Indices: 435903--435968 Score: 64
Period size: 17 Copynumber: 3.8 Consensus size: 17
435893 ATAAAAAACT
435903 AATATTACATTAAATTTA
1 AATATTA-ATTAAATTTA
435921 AATATTAATTATAA-TT-
1 AATATTAATTA-AATTTA
*
435937 AATAATTATTTTAAATTTA
1 AAT-ATTA-ATTAAATTTA
*
435956 AATATTATTTAAA
1 AATATTAATTAAA
435969 AATAAATTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
16 3 0.07
17 18 0.43
18 18 0.43
19 3 0.07
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AATATTAATTAAATTTA
Found at i:435938 original size:17 final size:18
Alignment explanation
Indices: 435903--435962 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
435893 ATAAAAAACT
435903 AATATTACATTAAATTTA
1 AATATTACATTAAATTTA
435921 AATATTA-ATTATAA-TT-
1 AATATTACATTA-AATTTA
**
435937 AATAATTATTTTAAATTTA
1 AAT-ATTACATTAAATTTA
435956 AATATTA
1 AATATTA
435963 TTTAAAAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
16 3 0.08
17 12 0.33
18 18 0.50
19 3 0.08
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
AATATTACATTAAATTTA
Found at i:435967 original size:29 final size:28
Alignment explanation
Indices: 435913--435985 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
435903 AATATTACAT
* *
435913 TAAATTTAAATATTAATTATAATTAATAA
1 TAAATTTAAAT-TTAAATATAATTAAAAA
* * *
435942 TTATTTTAAATTTAAATATTATTTAAAAA
1 TAAATTTAAATTTAAATA-TAATTAAAAA
435971 TAAATTTAAATTTAA
1 TAAATTTAAATTTAA
435986 TCTAACATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 6 0.17
29 30 0.83
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
TAAATTTAAATTTAAATATAATTAAAAA
Found at i:435985 original size:35 final size:35
Alignment explanation
Indices: 435896--435973 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 35
435886 ATAATATATA
435896 AAAAACTAAT-ATTACA-TTAAATTTAAATATTAATT
1 AAAAA-TAATAATTA-ATTTAAATTTAAATATTAATT
* * * *
435931 ATAATTAATAATTATTTTAAATTTAAATATTATTT
1 AAAAATAATAATTAATTTAAATTTAAATATTAATT
435966 AAAAATAA
1 AAAAATAA
435974 ATTTAAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (35 bp):
AAAAATAATAATTAATTTAAATTTAAATATTAATT
Found at i:435996 original size:29 final size:27
Alignment explanation
Indices: 435913--435997 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 27
435903 AATATTACAT
*
435913 TAAATTTAAATATTAATTATAATTAATAA
1 TAAATTTAAAT-TTAATTA-AATTAAAAA
* * * *
435942 TTATTTTAAATTTAAATATTATTTAAAAA
1 TAAATTTAAATTT-AAT-TAAATTAAAAA
435971 TAAATTTAAATTTAATCTAACATTAAA
1 TAAATTTAAATTTAAT-TAA-ATTAAA
435998 TATTTAATTA
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
28 7 0.16
29 35 0.81
30 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
TAAATTTAAATTTAATTAAATTAAAAA
Found at i:435997 original size:23 final size:23
Alignment explanation
Indices: 435947--435998 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
435937 AATAATTATT
*
435947 TTAAATTTAAATATTATTTAAAA
1 TTAAATTTAAATATTATCTAAAA
* *
435970 ATAAATTTAAAT-TTAATCTAACA
1 TTAAATTTAAATATT-ATCTAAAA
435993 TTAAAT
1 TTAAAT
435999 ATTTAATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAAATTTAAATATTATCTAAAA
Found at i:436020 original size:8 final size:8
Alignment explanation
Indices: 436009--436055 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
435999 ATTTAATTAT
*
436009 AATATAAA
1 AATATATA
436017 AATA-ATTA
1 AATATA-TA
436025 AATATATAA
1 AATATAT-A
436034 AATATATA
1 AATATATA
*
436042 TATATATA
1 AATATATA
436050 AATATA
1 AATATA
436056 GATCTAATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
7 1 0.03
8 23 0.70
9 9 0.27
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATATA
Found at i:436024 original size:17 final size:17
Alignment explanation
Indices: 436002--436051 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
435992 ATTAAATATT
436002 TAATTATAATATAAAAA
1 TAATTATAATATAAAAA
436019 TAATTA-AATATATAAAA
1 TAATTATAATATA-AAAA
436036 T-ATATATATATATAAA
1 TAAT-TATA-ATATAAA
436052 TATAGATCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.28
17 13 0.45
18 3 0.10
19 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATTATAATATAAAAA
Found at i:437062 original size:23 final size:21
Alignment explanation
Indices: 437032--437106 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
437022 TTAAATACGT
*
437032 TATATATTTTCATAAATTAATAA
1 TATATATTAT-ATAAATT-ATAA
*
437055 TATATATTATATAAATTTTAA
1 TATATATTATATAAATTATAA
*
437076 TATAT-TTATTTAATATTAT-A
1 TATATATTATATAA-ATTATAA
*
437096 TTTATATTATA
1 TATATATTATA
437107 ATTTAATTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
20 12 0.27
21 16 0.36
22 7 0.16
23 9 0.20
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (21 bp):
TATATATTATATAAATTATAA
Found at i:437097 original size:16 final size:15
Alignment explanation
Indices: 437057--437126 Score: 54
Period size: 16 Copynumber: 4.5 Consensus size: 15
437047 ATTAATAATA
**
437057 TATATTATATAAATT
1 TATATTATATTTATT
*
437072 T-TAATATATTTATT
1 TATATTATATTTATT
437086 TAATATTATATTTATAT
1 T-ATATTATATTTAT-T
*
437103 TATAATT-TAATTATTT
1 TAT-ATTATATTTA-TT
437119 TATATTAT
1 TATATTAT
437127 GATCTAAACA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
14 11 0.25
15 4 0.09
16 23 0.52
17 6 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TATATTATATTTATT
Found at i:437102 original size:11 final size:11
Alignment explanation
Indices: 437076--437126 Score: 63
Period size: 11 Copynumber: 4.7 Consensus size: 11
437066 TAAATTTTAA
437076 TATATT-TATT
1 TATATTATATT
437086 TAATATTATATT
1 T-ATATTATATT
437098 TATATTATAATT
1 TATATTAT-ATT
437110 TA-ATTAT-TT
1 TATATTATATT
437119 TATATTAT
1 TATATTAT
437127 GATCTAAACA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.11
10 6 0.16
11 17 0.46
12 10 0.27
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATATTATATT
Found at i:437121 original size:37 final size:37
Alignment explanation
Indices: 437048--437118 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
437038 TTTTCATAAA
437048 TTAATAATATATATTATATAAATTTTAATATATTTAT
1 TTAATAATATATATTATATAAATTTTAATATATTTAT
*
437085 TTAATATTATAT-TTATATTATAA-TTTAAT-TATTT
1 TTAATAATATATATTATA-TA-AATTTTAATATATTT
437119 TATATTATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
36 10 0.32
37 19 0.61
38 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (37 bp):
TTAATAATATATATTATATAAATTTTAATATATTTAT
Found at i:437394 original size:16 final size:16
Alignment explanation
Indices: 437375--437408 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
437365 AATATCTTAA
437375 TATATTAATATTATAT
1 TATATTAATATTATAT
* *
437391 TATATTATTTTTATAT
1 TATATTAATATTATAT
437407 TA
1 TA
437409 ATAATTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATTAATATTATAT
Found at i:439663 original size:20 final size:21
Alignment explanation
Indices: 439612--439668 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
439602 ATAAAATTAT
*
439612 ATATAATAAATATTTTAATAAA
1 ATATAATTAA-ATTTTAATAAA
*
439634 ATAATTATTAAATTTTAA-AAA
1 AT-ATAATTAAATTTTAATAAA
*
439655 ATATAATTATATTT
1 ATATAATTAAATTT
439669 ATTATATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 10 0.33
21 5 0.17
22 9 0.30
23 6 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATAATTAAATTTTAATAAA
Found at i:439853 original size:15 final size:15
Alignment explanation
Indices: 439815--439861 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
439805 TACATAATTA
*
439815 AAATATAAAATATAAT
1 AAATATAAATTA-AAT
439831 -AATA-AAATTAAAT
1 AAATATAAATTAAAT
*
439844 AAATATAAATTATAT
1 AAATATAAATTAAAT
439859 AAA
1 AAA
439862 AAAAGTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.11
14 9 0.33
15 15 0.56
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATATAAATTAAAT
Found at i:439865 original size:28 final size:29
Alignment explanation
Indices: 439815--439870 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
439805 TACATAATTA
* *
439815 AAATATAAAATATAATAATAAAATTAAAT
1 AAATATAAAATATAATAAAAAAAGTAAAT
*
439844 AAATATAAATTAT-ATAAAAAAAGTAAA
1 AAATATAAAATATAATAAAAAAAGTAAA
439871 ATTAACTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.29
Consensus pattern (29 bp):
AAATATAAAATATAATAAAAAAAGTAAAT
Found at i:439872 original size:29 final size:29
Alignment explanation
Indices: 439815--439872 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
439805 TACATAATTA
* *
439815 AAATATAAAATATAATAATAAAATTAAAT
1 AAATATAAAATATAATAAAAAAATAAAAT
*
439844 AAATATAAATTAT-ATAAAAAAAGTAAAAT
1 AAATATAAAATATAATAAAAAAA-TAAAAT
439873 TAACTTACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (29 bp):
AAATATAAAATATAATAAAAAAATAAAAT
Found at i:440520 original size:16 final size:16
Alignment explanation
Indices: 440483--440521 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
440473 AATTTTAAAT
440483 TTTATT-TGATAAAAA
1 TTTATTATGATAAAAA
* *
440498 ATCATTATGATAAAAA
1 TTTATTATGATAAAAA
440514 TTTATTAT
1 TTTATTAT
440522 CCACACAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (16 bp):
TTTATTATGATAAAAA
Found at i:441772 original size:2 final size:2
Alignment explanation
Indices: 441765--441801 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
441755 ATACACTGTT
441765 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
441802 TTCTCACTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:443909 original size:18 final size:19
Alignment explanation
Indices: 443858--443914 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 19
443848 AAAATTTAAA
*
443858 AAAATTAAATTTAAAATAT
1 AAAATTCAATTTAAAATAT
* *
443877 -AAATTCAAATAAAAATAT
1 AAAATTCAATTTAAAATAT
* *
443895 AAAATT-TATTTAAAAAAT
1 AAAATTCAATTTAAAATAT
443913 AA
1 AA
443915 GTTGAGTCTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTCAATTTAAAATAT
Found at i:444444 original size:3 final size:3
Alignment explanation
Indices: 444436--444482 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
444426 TACATTAACC
444436 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
444483 GTCATTCTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:444681 original size:24 final size:22
Alignment explanation
Indices: 444638--444682 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
444628 AATTTATTAG
**
444638 ATATTAATTATATATTTTTAAA
1 ATATTAATTATATACATTTAAA
444660 ATATTAATTTTATATACATTTAA
1 ATATTAA--TTATATACATTTAA
444683 CAATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
24 12 0.63
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATTAATTATATACATTTAAA
Found at i:446563 original size:37 final size:37
Alignment explanation
Indices: 446522--446617 Score: 113
Period size: 37 Copynumber: 2.6 Consensus size: 37
446512 ATTTTTTATT
** * * *
446522 GATTGGCGTTGCCATCCAAATTCTAATAATCATAGTG
1 GATTGGCACTGCCACCCAAATACTAACAATCATAGTG
446559 GATTGGCACTGCCACCCAAATACTAACAATCATAGTG
1 GATTGGCACTGCCACCCAAATACTAACAATCATAGTG
* *
446596 GATTAGC-CAAGCCACCCAAATA
1 GATTGGCAC-TGCCACCCAAATA
446618 TTACTTGTCG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
36 1 0.02
37 50 0.98
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (37 bp):
GATTGGCACTGCCACCCAAATACTAACAATCATAGTG
Found at i:451239 original size:37 final size:37
Alignment explanation
Indices: 451161--451245 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
451151 ATTGGCGTTG
* * **
451161 CCACCCAAATTCTAACAATCATAGTGGATTAACACTG
1 CCACCCAAATACTAACAATCATAGCGGATTAACACAA
**
451198 CCACCCAAATACTAACAATCATAGCGGATTGGTCA-AA
1 CCACCCAAATACTAACAATCATAGCGGATT-AACACAA
451235 CCACCCAAATA
1 CCACCCAAATA
451246 TTACTTATCG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
37 39 0.95
38 2 0.05
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.20
Consensus pattern (37 bp):
CCACCCAAATACTAACAATCATAGCGGATTAACACAA
Found at i:451957 original size:2 final size:2
Alignment explanation
Indices: 451950--451981 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
451940 TCTTCCCCGC
451950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
451982 TCTCCTTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:454950 original size:27 final size:28
Alignment explanation
Indices: 454880--454950 Score: 65
Period size: 30 Copynumber: 2.5 Consensus size: 28
454870 TTAATTTATT
454880 TTTATATTATTATATAATCATATTTAAAA
1 TTTATATTA-TATATAATCATATTTAAAA
* * *
454909 TATTTTAATTTTATATAA-C-TTTTTAATAA
1 T-TTAT-ATTATATATAATCATATTTAA-AA
454938 TTTATATTATATA
1 TTTATATTATATA
454951 ATTTTAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
27 7 0.21
28 9 0.26
29 5 0.15
30 10 0.29
31 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATATTATATATAATCATATTTAAAA
Found at i:454955 original size:23 final size:25
Alignment explanation
Indices: 454919--454966 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
454909 TATTTTAATT
454919 TTATATAACTTTTTAATA-ATTTATA
1 TTATATAAC-TTTTAATATATTTATA
454944 TTATATAA-TTTTAATATATTTAT
1 TTATATAACTTTTAATATATTTAT
454967 TCATATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 6 0.27
25 8 0.36
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (25 bp):
TTATATAACTTTTAATATATTTATA
Found at i:454972 original size:23 final size:23
Alignment explanation
Indices: 454929--454973 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
454919 TTATATAACT
*
454929 TTTTAATAATTTATATTATATAA
1 TTTTAATAATTTATATCATATAA
454952 TTTTAATATATTTAT-TCATATA
1 TTTTAATA-ATTTATATCATATA
454974 TTAATAACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTAATAATTTATATCATATAA
Found at i:455921 original size:21 final size:23
Alignment explanation
Indices: 455883--455931 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 23
455873 TTCTCCGAAC
*
455883 TTAAATTTTTTTTGAAAA-A-AT
1 TTAAATTTTATTTGAAAATATAT
455904 TTAAATTATTATTT-AAAATATAT
1 TTAAATT-TTATTTGAAAATATAT
455927 TTAAA
1 TTAAA
455932 AATTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 11 0.46
22 6 0.25
23 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TTAAATTTTATTTGAAAATATAT
Found at i:456614 original size:3 final size:3
Alignment explanation
Indices: 456608--456639 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
456598 TAACAACATC
456608 ATT ATT ATT ATT ATT ATT ATT -TT A-T ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
456640 CACAGCCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:458683 original size:21 final size:21
Alignment explanation
Indices: 458657--458696 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
458647 TTAAAAAATA
458657 TATTTTAT-ATTAATATTTATG
1 TATTTTATAATTAA-ATTTATG
458678 TATTTTATAATTAAATTTA
1 TATTTTATAATTAAATTTA
458697 AATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TATTTTATAATTAAATTTATG
Found at i:459293 original size:3 final size:3
Alignment explanation
Indices: 459285--459314 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
459275 GCTTTAATGT
459285 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
459315 TGTCCTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:459619 original size:12 final size:12
Alignment explanation
Indices: 459600--459629 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
459590 AAATACACAT
459600 AATTAAATTTAA
1 AATTAAATTTAA
*
459612 AGTTAAATTTAA
1 AATTAAATTTAA
459624 AATTAA
1 AATTAA
459630 TTTTTTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (12 bp):
AATTAAATTTAA
Found at i:459698 original size:17 final size:18
Alignment explanation
Indices: 459688--459748 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 18
459678 ATTAATTTTT
459688 ATTTAAAATTAAATTTAA
1 ATTTAAAATTAAATTTAA
*
459706 ATTTAAAAAATCAAATTTAA
1 ATTT--AAAATTAAATTTAA
*
459726 A-TTAAATTTTAAATTATAA
1 ATTTAAA-ATTAAATT-TAA
459745 ATTT
1 ATTT
459749 TTAATTGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 3 0.09
18 10 0.29
19 6 0.17
20 16 0.46
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAAATTAAATTTAA
Found at i:459746 original size:25 final size:25
Alignment explanation
Indices: 459675--459748 Score: 66
Period size: 26 Copynumber: 3.0 Consensus size: 25
459665 TAAACTCAAG
* *
459675 TAAATT-AATTTT-TATT-TAAAAT
1 TAAATTAAATTTTAAATTATAAATT
**
459697 TAAATTTAAA-TTTAAAAAATCAAATT
1 TAAA-TTAAATTTTAAATTAT-AAATT
459723 TAAATTAAATTTTAAATTATAAATT
1 TAAATTAAATTTTAAATTATAAATT
459748 T
1 T
459749 TTAATTGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
22 4 0.10
23 5 0.12
24 3 0.08
25 12 0.30
26 16 0.40
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (25 bp):
TAAATTAAATTTTAAATTATAAATT
Found at i:459749 original size:14 final size:12
Alignment explanation
Indices: 459688--459748 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
459678 ATTAATTTTT
*
459688 ATTTAAAATTAA
1 ATTTAAATTTAA
459700 ATTTAAATTTAAAA
1 ATTTAAATTT--AA
* *
459714 AATCAAATTTAA
1 ATTTAAATTTAA
459726 A-TTAAATTTTAA
1 ATTTAAA-TTTAA
459738 ATTATAAATTT
1 ATT-TAAATTT
459749 TTAATTGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
11 4 0.10
12 18 0.45
13 4 0.10
14 14 0.35
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTTAAATTTAA
Found at i:461397 original size:15 final size:14
Alignment explanation
Indices: 461361--461409 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 14
461351 TAATTAAATG
461361 TTTATTTTAAATTTA
1 TTTATTTTAAA-TTA
*
461376 TGTATTTTAAATTA
1 TTTATTTTAAATTA
461390 TTTAATTTGTATAATTA
1 TTT-ATTT-TA-AATTA
461407 TTT
1 TTT
461410 TTAATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 5 0.17
15 14 0.48
16 2 0.07
17 8 0.28
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (14 bp):
TTTATTTTAAATTA
Found at i:465450 original size:18 final size:18
Alignment explanation
Indices: 465427--465489 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 18
465417 ATCTAATTTG
465427 ATATTAAAAAAATTTTAA
1 ATATTAAAAAAATTTTAA
465445 ATATTAAAAATAATTTAATAA
1 ATATTAAAAA-AATTT--TAA
465466 ATTAATTAAATAAAATTTTAA
1 A-T-ATTAAA-AAAATTTTAA
465487 ATA
1 ATA
465490 AAAAATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
18 10 0.26
19 6 0.15
20 1 0.03
21 8 0.21
22 1 0.03
23 11 0.28
24 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATTAAAAAAATTTTAA
Found at i:465464 original size:17 final size:17
Alignment explanation
Indices: 465420--465464 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
465410 AAGAAAGATC
*
465420 TAATTTGATATTAAAAA
1 TAATTTAATATTAAAAA
465437 -AATTTTAAATATTAAAAA
1 TAA-TTT-AATATTAAAAA
465455 TAATTTAATA
1 TAATTTAATA
465465 AATTAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 2 0.08
17 7 0.29
18 13 0.54
19 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (17 bp):
TAATTTAATATTAAAAA
Found at i:465697 original size:18 final size:18
Alignment explanation
Indices: 465670--465725 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
465660 TTTAACAAAT
465670 TAAAAA-TAATAATAATAA
1 TAAAAATTAATAATAA-AA
465688 -AAAAATTAATTAATAAAA
1 TAAAAATTAA-TAATAAAA
* *
465706 TTAAAATAAATAATAAAA
1 TAAAAATTAATAATAAAA
465724 TA
1 TA
465726 GCGAGATAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 5 0.16
18 14 0.44
19 13 0.41
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAATTAATAATAAAA
Found at i:466188 original size:21 final size:21
Alignment explanation
Indices: 466145--466194 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
466135 TAATTTAATA
* *
466145 ATAAATTTATTTATTTATGAG
1 ATAAATTTATTTATTGATCAG
466166 ATAAATTT-TTTATTCGATCAG
1 ATAAATTTATTTATT-GATCAG
*
466187 ATAGATTT
1 ATAAATTT
466195 GACTCATACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (21 bp):
ATAAATTTATTTATTGATCAG
Found at i:467877 original size:17 final size:17
Alignment explanation
Indices: 467852--467889 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
467842 GATACAGTTC
*
467852 AAAACTTAAATAA-ATAA
1 AAAAATTAAA-AATATAA
467869 AAAAATTAAAAATATAA
1 AAAAATTAAAAATATAA
467886 AAAA
1 AAAA
467890 CACTGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATTAAAAATATAA
Found at i:468851 original size:2 final size:2
Alignment explanation
Indices: 468844--468880 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
468834 ATTGTGATGG
468844 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
468881 TTTATCATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:469024 original size:5 final size:5
Alignment explanation
Indices: 468983--469015 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
468973 AAATATATTT
*
468983 TTTAT TTTAA -TTAA TTTAA TTTAA TTTAA TTTA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTA
469016 TTATTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:469283 original size:24 final size:24
Alignment explanation
Indices: 469256--469302 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
469246 AATTTATATA
* *
469256 AAAAAATTAAAATATAAATATAAT
1 AAAAAATGAAAATAAAAATATAAT
* *
469280 AAAATATGATAATAAAAATATAA
1 AAAAAATGAAAATAAAAATATAA
469303 AATTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAAAATGAAAATAAAAATATAAT
Found at i:470683 original size:22 final size:23
Alignment explanation
Indices: 470639--470694 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
470629 TAGGTTTGAG
* *
470639 TAATTTTATATTT-AGTTTATTT
1 TAATTTTAAATTTAAATTTATTT
470661 TAATTTTAAATTTAAATTT-TTT
1 TAATTTTAAATTTAAATTTATTT
470683 T-A-TTTAAATTTA
1 TAATTTTAAATTTA
470695 TTTAGATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.32
21 1 0.03
22 16 0.52
23 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TAATTTTAAATTTAAATTTATTT
Found at i:470687 original size:14 final size:14
Alignment explanation
Indices: 470643--470698 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
470633 TTTGAGTAAT
*
470643 TTTATATTTAGTTTA
1 TTTAAATTTA-TTTA
* **
470658 TTTTAATTT-TAAA
1 TTTAAATTTATTTA
*
470671 TTTAAATTTTTTTA
1 TTTAAATTTATTTA
470685 TTTAAATTTATTTA
1 TTTAAATTTATTTA
470699 GATTTGAGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
13 10 0.31
14 15 0.47
15 7 0.22
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (14 bp):
TTTAAATTTATTTA
Found at i:470710 original size:16 final size:16
Alignment explanation
Indices: 470691--470721 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
470681 TTTATTTAAA
470691 TTTATTTAGATTTGAG
1 TTTATTTAGATTTGAG
*
470707 TTTATTTGGATTTGA
1 TTTATTTAGATTTGA
470722 TCTTTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTATTTAGATTTGAG
Found at i:471384 original size:14 final size:15
Alignment explanation
Indices: 471358--471386 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
471348 ATTTTTATGA
471358 TTTAATATATATATT
1 TTTAATATATATATT
471373 TTTAAT-TATATATT
1 TTTAATATATATATT
471387 ATCTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAATATATATATT
Found at i:471943 original size:23 final size:22
Alignment explanation
Indices: 471889--471931 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
471879 AAAGTTCACA
471889 ATATAATTTACTTTTTGATAAG
1 ATATAATTTACTTTTTGATAAG
471911 ATATAATTTACTTTTTGATAA
1 ATATAATTTACTTTTTGATAA
471932 ATTACTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (22 bp):
ATATAATTTACTTTTTGATAAG
Found at i:472059 original size:8 final size:8
Alignment explanation
Indices: 472048--472081 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
472038 GATTATTTAA
472048 TTATAATT
1 TTATAATT
472056 TTATAATT
1 TTATAATT
472064 TTATAATT
1 TTATAATT
472072 TTATAATT
1 TTATAATT
472080 TT
1 TT
472082 TAGTATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTATAATT
Found at i:472638 original size:14 final size:14
Alignment explanation
Indices: 472619--472646 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
472609 ATCGCTGTTA
472619 AATATTTAAATTTT
1 AATATTTAAATTTT
472633 AATATTTAAATTTT
1 AATATTTAAATTTT
472647 TTTTATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATATTTAAATTTT
Found at i:474584 original size:20 final size:20
Alignment explanation
Indices: 474504--474585 Score: 51
Period size: 20 Copynumber: 3.9 Consensus size: 20
474494 GTAAAACTTA
474504 ACGATATTAAATATA-ATTAT
1 ACGATA-TAAATATATATTAT
* *
474524 ACGAATATAATATTTATAAATTAA
1 ACG-ATATAA-A--TATATATTAT
** *
474548 AAAATAT-AATACGATATTAT
1 ACGATATAAATA-TATATTAT
474568 ACGATATAAATATATATT
1 ACGATATAAATATATATT
474586 TAAAAATTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
19 2 0.04
20 21 0.46
21 9 0.20
22 1 0.02
23 8 0.17
24 5 0.11
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
ACGATATAAATATATATTAT
Found at i:474903 original size:23 final size:22
Alignment explanation
Indices: 474873--474918 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
474863 AATTATTTAG
474873 ATTTAAATTAAAAGTTAAAATTT
1 ATTTAAATTAAAA-TTAAAATTT
* *
474896 ATTTAAATTTAAATTAAATTTT
1 ATTTAAATTAAAATTAAAATTT
474918 A
1 A
474919 AATATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTTAAATTAAAATTAAAATTT
Found at i:474905 original size:29 final size:30
Alignment explanation
Indices: 474865--474942 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 30
474855 GTCAATTTAA
*
474865 TTATTTAGATTTAAATTAAAAGTTAAA-AT
1 TTATTTAAATTTAAATTAAAAGTTAAATAT
**
474894 TTATTTAAATTTAAATTAAATTTTAAATAT
1 TTATTTAAATTTAAATTAAAAGTTAAATAT
** *
474924 TTATTCGAATATAAATTAA
1 TTATTTAAATTTAAATTAA
474943 GTACTACTGC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 24 0.57
30 18 0.43
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (30 bp):
TTATTTAAATTTAAATTAAAAGTTAAATAT
Found at i:475579 original size:29 final size:29
Alignment explanation
Indices: 475534--475590 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
475524 TGGGTGTTTA
*
475534 TATTTAATTATTATTTAAATT-TTTTTTG
1 TATTTAATCATTATTTAAATTATTTTTTG
*
475562 TATTTAATACATTATTTATATTATTTTTT
1 TATTTAAT-CATTATTTAAATTATTTTTT
475591 TAAAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.32
29 11 0.44
30 6 0.24
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (29 bp):
TATTTAATCATTATTTAAATTATTTTTTG
Found at i:477253 original size:19 final size:20
Alignment explanation
Indices: 477231--477271 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
477221 AATTTTAAAT
*
477231 TTTAAATTT-TTTTATATAA
1 TTTAAATTTATTTAATATAA
*
477250 TTTATATTTATTTAATATAA
1 TTTAAATTTATTTAATATAA
477270 TT
1 TT
477272 ATAATATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAAATTTATTTAATATAA
Found at i:478896 original size:18 final size:18
Alignment explanation
Indices: 478875--478914 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
478865 AAATTTGATT
478875 ATTTACTTAAATTTAAAC
1 ATTTACTTAAATTTAAAC
* *
478893 ATTTATTTAAATTTAAAT
1 ATTTACTTAAATTTAAAC
478911 ATTT
1 ATTT
478915 TAAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTACTTAAATTTAAAC
Found at i:479960 original size:29 final size:28
Alignment explanation
Indices: 479911--479965 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
479901 ATGATTGTAG
479911 AATATATATATAATATAAAAATAATAAA
1 AATATATATATAATATAAAAATAATAAA
479939 AATATAT-TATAATATGAGAAAATAATA
1 AATATATATATAATAT-A-AAAATAATA
479966 TGACATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 8 0.32
28 8 0.32
29 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (28 bp):
AATATATATATAATATAAAAATAATAAA
Found at i:480004 original size:28 final size:28
Alignment explanation
Indices: 479972--480066 Score: 77
Period size: 32 Copynumber: 3.2 Consensus size: 28
479962 AATATGACAT
479972 AATAATATATATATTAAAATTTATATAA
1 AATAATATATATATTAAAATTTATATAA
* *
480000 AATAAATTATTAATATATCAAAATATATATAA
1 AAT-AA-TA-T-ATATATTAAAATTTATATAA
* *
480032 AATTAT-TATAT-TTTAAATATTATTATAA
1 AATAATATATATATTAAAAT-TTA-TATAA
*
480060 TATAATA
1 AATAATA
480067 CGAATGCAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
26 5 0.10
27 6 0.12
28 13 0.25
29 2 0.04
30 3 0.06
31 2 0.04
32 21 0.40
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (28 bp):
AATAATATATATATTAAAATTTATATAA
Found at i:480042 original size:17 final size:18
Alignment explanation
Indices: 480022--480064 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
480012 ATATATCAAA
480022 ATATATATAAA-ATTATT
1 ATATATATAAATATTATT
*
480039 ATAT-TTTAAATATTATT
1 ATATATATAAATATTATT
480056 ATA-ATATAA
1 ATATATATAA
480065 TACGAATGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATATATAAATATTATT
Found at i:480166 original size:16 final size:17
Alignment explanation
Indices: 480132--480166 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
480122 AAAGAGCTAC
*
480132 TATTTTAAATATTATTA
1 TATTTTAAATATAATTA
480149 TATTTTAAATA-AATTA
1 TATTTTAAATATAATTA
480165 TA
1 TA
480167 GAGGAAGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTTTAAATATAATTA
Found at i:482182 original size:4 final size:4
Alignment explanation
Indices: 482173--482199 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
482163 ATTTTATCCG
482173 TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TAT
482200 ACTTGATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:486664 original size:13 final size:13
Alignment explanation
Indices: 486624--486665 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
486614 AATAATGTTT
*
486624 AATTTTAAAATAA
1 AATTTTAAAAAAA
486637 AA-TTTAGAAAAAA
1 AATTTTA-AAAAAA
486650 AATTTTAAAAGAAA
1 AATTTTAAAA-AAA
486664 AA
1 AA
486666 AATTAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 4 0.16
13 12 0.48
14 9 0.36
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (13 bp):
AATTTTAAAAAAA
Found at i:487103 original size:19 final size:19
Alignment explanation
Indices: 487079--487115 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
487069 GATATAAATT
487079 AATTAAA-ATTTTAATAAAA
1 AATTAAATATTTT-ATAAAA
487098 AATTAAATATTTTATAAA
1 AATTAAATATTTTATAAA
487116 TTAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTAAATATTTTATAAAA
Found at i:487129 original size:20 final size:19
Alignment explanation
Indices: 487071--487134 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
487061 TTATCATTGA
*
487071 TATAAATTAATTAAAATTT
1 TATAAATTAAATAAAATTT
487090 TAATAAA--AAATTAAATATTT
1 T-ATAAATTAAA-TAAA-ATTT
487110 TATAAATTAAATAATAATTT
1 TATAAATTAAATAA-AATTT
487130 TATAA
1 TATAA
487135 GAATATTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.05
19 10 0.26
20 22 0.58
21 4 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TATAAATTAAATAAAATTT
Found at i:487346 original size:14 final size:14
Alignment explanation
Indices: 487310--487352 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
487300 AATATATTTG
487310 TATCATATTATATA
1 TATCATATTATATA
*
487324 T-TAATTATTATATA
1 TATCA-TATTATATA
487338 TATCATATTCATATA
1 TATCATATT-ATATA
487353 ATTTGTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 2 0.08
14 15 0.62
15 7 0.29
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (14 bp):
TATCATATTATATA
Found at i:489079 original size:19 final size:19
Alignment explanation
Indices: 489051--489096 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
489041 TTTAAATGAT
* * *
489051 ATTTAAATAAATAATTAAG
1 ATTTATATAAAAAATAAAG
489070 ATTTATATAAAAAATAAAG
1 ATTTATATAAAAAATAAAG
*
489089 ATATATAT
1 ATTTATAT
489097 GACATATACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (19 bp):
ATTTATATAAAAAATAAAG
Found at i:489525 original size:21 final size:21
Alignment explanation
Indices: 489501--489568 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 21
489491 CACGAAAATA
489501 ATATTTATAATTTATATATTT
1 ATATTTATAATTTATATATTT
**
489522 ATATTATATTTTTATATATAATATT
1 ATATT-TATAATT-TATAT-AT-TT
*
489547 ATATTTAAAATATTATATATTT
1 ATATTTATAAT-TTATATATTT
489569 TTATAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
21 5 0.14
22 7 0.19
23 7 0.19
24 10 0.27
25 8 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTTATAATTTATATATTT
Found at i:489528 original size:13 final size:13
Alignment explanation
Indices: 489501--489551 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
489491 CACGAAAATA
489501 ATATTTATAATTTAT
1 ATATTTAT-A-TTAT
489516 ATATTTATATTAT
1 ATATTTATATTAT
*
489529 ATTTTTATA-TAT
1 ATATTTATATTAT
489541 A-ATATTATATT
1 ATAT-TTATATT
489552 TAAAATATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 1 0.03
12 9 0.28
13 13 0.41
14 1 0.03
15 8 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATATTTATATTAT
Found at i:489531 original size:26 final size:26
Alignment explanation
Indices: 489501--489568 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
489491 CACGAAAATA
489501 ATATTTATAATTTATATATTTATATT
1 ATATTTATAATTTATATATTTATATT
*
489527 ATA--T-T--TTTATATA-TAATATT
1 ATATTTATAATTTATATATTTATATT
*
489547 ATATTTAAAATATTATATATTT
1 ATATTTATAAT-TTATATATTT
489569 TTATAAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 13
0.67 0.06 0.27
Matches are distributed among these distances:
20 9 0.28
21 8 0.25
22 1 0.03
23 1 0.03
24 1 0.03
25 1 0.03
26 10 0.31
27 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
ATATTTATAATTTATATATTTATATT
Found at i:489545 original size:20 final size:20
Alignment explanation
Indices: 489498--489552 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
489488 TCACACGAAA
*
489498 ATAATATT-TATAATTTATAT
1 ATAATATTATAT-TTTTATAT
*
489518 ATTTATATTATATTTTTATAT
1 A-TAATATTATATTTTTATAT
489539 ATAATATTATATTT
1 ATAATATTATATTT
489553 AAAATATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.43
21 14 0.47
22 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATAATATTATATTTTTATAT
Found at i:489584 original size:20 final size:20
Alignment explanation
Indices: 489511--489587 Score: 56
Period size: 18 Copynumber: 4.0 Consensus size: 20
489501 ATATTTATAA
* *
489511 TTTATATATTTATATTATATT
1 TTTATAAATTT-TAATATATT
* *
489532 TTTAT--A-TATAATATTATA
1 TTTATAAATTTTAATA-TATT
*
489550 TTTA-AAATATT-ATATATT
1 TTTATAAATTTTAATATATT
489568 TTTATAAATTTTAATATATT
1 TTTATAAATTTTAATATATT
489588 AATAAATGAT
Statistics
Matches: 43, Mismatches: 7, Indels: 13
0.68 0.11 0.21
Matches are distributed among these distances:
17 4 0.09
18 15 0.35
19 11 0.26
20 8 0.19
21 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTATAAATTTTAATATATT
Found at i:489592 original size:18 final size:18
Alignment explanation
Indices: 489571--489623 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
489561 ATATATTTTT
489571 ATAAATTTTAATATATTA
1 ATAAATTTTAATATATTA
**
489589 ATAAATGAT-AT-TA-T-
1 ATAAATTTTAATATATTA
*
489603 ATAAATTTTAATATTTTA
1 ATAAATTTTAATATATTA
489621 ATA
1 ATA
489624 TTATAACAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 8
0.67 0.13 0.21
Matches are distributed among these distances:
14 7 0.27
15 3 0.12
16 3 0.12
17 3 0.12
18 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATAAATTTTAATATATTA
Found at i:489913 original size:16 final size:16
Alignment explanation
Indices: 489892--489926 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
489882 TATAAAATTT
489892 TAAAAATATTAAATTAA
1 TAAAAA-ATTAAATTAA
*
489909 TAAAAAATTCAATTAA
1 TAAAAAATTAAATTAA
489925 TA
1 TA
489927 CTTAATTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAAAATTAAATTAA
Found at i:490879 original size:24 final size:24
Alignment explanation
Indices: 490842--490889 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
490832 TATATATGTT
*
490842 AAAATTTAAATTTAAAAATTATTA
1 AAAATTTAAATTTAAAAATAATTA
** *
490866 AAAATTTATTTTTAATAATAATTA
1 AAAATTTAAATTTAAAAATAATTA
490890 TATAAATTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
AAAATTTAAATTTAAAAATAATTA
Found at i:493945 original size:3 final size:3
Alignment explanation
Indices: 493937--493963 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
493927 CCTTCCTATC
493937 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
493964 TTAGATGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:495475 original size:24 final size:26
Alignment explanation
Indices: 495439--495486 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
495429 AAATTATTCG
495439 AATTATATCAAAATTT-AATATTAATT
1 AATTATATCAAAATTTGAAT-TTAATT
495465 AATTAT-T-AAAATTTGAATTTAA
1 AATTATATCAAAATTTGAATTTAA
495487 ATTTTAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (26 bp):
AATTATATCAAAATTTGAATTTAATT
Found at i:495997 original size:14 final size:14
Alignment explanation
Indices: 495974--496021 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
495964 AATTTAATAT
495974 ATTT-ATTAAAAAA
1 ATTTAATTAAAAAA
495987 ATTTAATTAAAAAA
1 ATTTAATTAAAAAA
*
496001 A--TAATTTAAAAA
1 ATTTAATTAAAAAA
*
496013 TTTTAATTA
1 ATTTAATTA
496022 TTTAGTGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 10 0.34
13 4 0.14
14 15 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATTTAATTAAAAAA
Found at i:496085 original size:3 final size:3
Alignment explanation
Indices: 496068--496109 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
496058 AAATAGCAAA
496068 AAT ATAT AA- AAT AAT AAT AAT AAT AA- AAT -AT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
496110 AATCACTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 6 0.17
3 26 0.74
4 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:496102 original size:16 final size:17
Alignment explanation
Indices: 496068--496112 Score: 74
Period size: 16 Copynumber: 2.6 Consensus size: 17
496058 AAATAGCAAA
496068 AATATATAAAATAATAAT
1 AATA-ATAAAATAATAAT
496086 AATAATAAAAT-ATAAT
1 AATAATAAAATAATAAT
496102 AATAATAAAAT
1 AATAATAAAAT
496113 CACTTCATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.59
17 7 0.26
18 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AATAATAAAATAATAAT
Found at i:496781 original size:3 final size:3
Alignment explanation
Indices: 496767--496796 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
496757 TTACAAATCA
496767 AAT AACT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AA
496797 ATTTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:498442 original size:24 final size:24
Alignment explanation
Indices: 498415--498480 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
498405 TCGTTATTTT
498415 ATTA-AATATATTAAAAATAATAAA
1 ATTATAAT-TATTAAAAATAATAAA
* *
498439 ATTATAATTATTATAAATAATATA
1 ATTATAATTATTAAAAATAATAAA
*
498463 ATT-T-ATTATTATAAATAA
1 ATTATAATTATTAAAAATAA
498481 AATGTTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 14 0.36
23 1 0.03
24 21 0.54
25 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTATAATTATTAAAAATAATAAA
Found at i:498492 original size:25 final size:22
Alignment explanation
Indices: 498423--498480 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 22
498413 TTATTAAATA
* *
498423 TATTAAAAATAATAAAATTATAAT
1 TATTATAAATAATATAATT-T-AT
498447 TATTATAAATAATATAATTTAT
1 TATTATAAATAATATAATTTAT
498469 TATTATAAATAA
1 TATTATAAATAA
498481 AATGTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 14 0.44
23 1 0.03
24 17 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTATAAATAATATAATTTAT
Found at i:498628 original size:19 final size:20
Alignment explanation
Indices: 498593--498631 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
498583 CAAATGATAT
498593 TAAAATATGTCTTATTTTTA
1 TAAAATATGTCTTATTTTTA
*
498613 TAAAATAT-TTTTATTTTTA
1 TAAAATATGTCTTATTTTTA
498632 AAATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
TAAAATATGTCTTATTTTTA
Found at i:498814 original size:2 final size:2
Alignment explanation
Indices: 498807--498837 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
498797 TGAAACAGAA
498807 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
498838 TTGATTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:500558 original size:17 final size:18
Alignment explanation
Indices: 500533--500566 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
500523 AAATTTAAAA
*
500533 ATATTTTTTAT-ATTAAT
1 ATATATTTTATAATTAAT
500550 ATATATTTTATAATTAA
1 ATATATTTTATAATTAA
500567 ATTTAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATATTTTATAATTAAT
Found at i:501423 original size:29 final size:29
Alignment explanation
Indices: 501384--501490 Score: 135
Period size: 30 Copynumber: 3.7 Consensus size: 29
501374 AAATTCGTAT
* *
501384 ATTTTTA-TTATAATTAAATAATTTTTTT
1 ATTTTTATTTATATTTAAATAATTTTTTA
501412 ATTTTTATTTATATTTAAATAATTTTTTA
1 ATTTTTATTTATATTTAAATAATTTTTTA
**
501441 ATTTTTAATTTATATTTAAATAAAATTTTA
1 ATTTTT-ATTTATATTTAAATAATTTTTTA
* *
501471 ACTTTTAATTTATACTTAAA
1 A-TTTTTATTTATATTTAAA
501491 AAATATTAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
28 7 0.10
29 25 0.36
30 34 0.49
31 4 0.06
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (29 bp):
ATTTTTATTTATATTTAAATAATTTTTTA
Found at i:501537 original size:17 final size:19
Alignment explanation
Indices: 501490--501546 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
501480 TTATACTTAA
*
501490 AAAATATTAATTATAAAT-T
1 AAAATTTTAATT-TAAATAT
*
501509 -AATTTTTAATTTAAA-AT
1 AAAATTTTAATTTAAATAT
501526 AAAATTTT-ATTTAAATAT
1 AAAATTTTAATTTAAATAT
501544 AAA
1 AAA
501547 TCAAAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 12 0.38
18 20 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAAATTTTAATTTAAATAT
Found at i:501965 original size:15 final size:17
Alignment explanation
Indices: 501944--501985 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
501934 AAAATTTAAT
501944 TTTAAATTAATT-TTTA
1 TTTAAATTAATTATTTA
501960 -TTAAATAATAATTATTTA
1 TTTAAAT--TAATTATTTA
501978 TTTAAATT
1 TTTAAATT
501986 TAAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
15 6 0.27
17 6 0.27
18 4 0.18
19 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAAATTAATTATTTA
Found at i:502012 original size:18 final size:17
Alignment explanation
Indices: 501986--502019 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
501976 TATTTAAATT
501986 TAAAATTTAAAATTAATA
1 TAAAATTT-AAATTAATA
*
502004 TAAATTTTAAATTAAT
1 TAAAATTTAAATTAAT
502020 TATTTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAATTTAAATTAATA
Found at i:502281 original size:18 final size:18
Alignment explanation
Indices: 502260--502295 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
502250 ATCATTTAAA
502260 AATAAAATAAAAATAATT
1 AATAAAATAAAAATAATT
* *
502278 AATAAAATCAAAGTAATT
1 AATAAAATAAAAATAATT
502296 TAAATATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (18 bp):
AATAAAATAAAAATAATT
Found at i:502324 original size:12 final size:12
Alignment explanation
Indices: 502291--502342 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
502281 AAAATCAAAG
502291 TAATTTA-AATAT
1 TAATTTATAA-AT
*
502303 GAATTT-TAAAT
1 TAATTTATAAAT
502314 TAATTTATAAAT
1 TAATTTATAAAT
* *
502326 CAATATATAAAT
1 TAATTTATAAAT
502338 TAATT
1 TAATT
502343 CTTTTAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
11 7 0.22
12 25 0.78
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (12 bp):
TAATTTATAAAT
Found at i:502472 original size:16 final size:15
Alignment explanation
Indices: 502451--502489 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
502441 AAAATATATT
502451 ATTTAAAAATAAAAAA
1 ATTTAAAAAT-AAAAA
*
502467 ATTTAAACATAAAAA
1 ATTTAAAAATAAAAA
502482 ATTTAAAA
1 ATTTAAAA
502490 TAATTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATTTAAAAATAAAAA
Found at i:503126 original size:32 final size:32
Alignment explanation
Indices: 503077--503178 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 32
503067 AATTAAAAAT
*
503077 TTTAATAATT-ATTAAATTTATAAATAATTATG
1 TTTAAT-ATTCATTAAATTTATAAATAATTATA
* *
503109 TTTAGTATTCATTAAATTTATATAA-AATTTTA
1 TTTAATATTCATTAAATTTATA-AATAATTATA
* * *
503141 TTTAATATTTATCAAATTTATGAATAATTATA
1 TTTAATATTCATTAAATTTATAAATAATTATA
*
503173 CTTAAT
1 TTTAAT
503179 GAGTAATTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
31 5 0.09
32 51 0.88
33 2 0.03
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (32 bp):
TTTAATATTCATTAAATTTATAAATAATTATA
Found at i:503185 original size:17 final size:17
Alignment explanation
Indices: 503160--503195 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
503150 TATCAAATTT
503160 ATGAATAATTATACTTA
1 ATGAATAATTATACTTA
*
503177 ATGAGTAATTATACTTA
1 ATGAATAATTATACTTA
503194 AT
1 AT
503196 TTGTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (17 bp):
ATGAATAATTATACTTA
Found at i:503459 original size:29 final size:30
Alignment explanation
Indices: 503396--503464 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
503386 AATATGATTG
* *
503396 ATATTAATATAATTTTTAATATATATTAAC
1 ATATTTATATAATTTTTAATATATATTAAA
* *
503426 TTATTTTATATAATTTTT-A-ATGTATTAAA
1 ATA-TTTATATAATTTTTAATATATATTAAA
503455 ATATTTATAT
1 ATATTTATAT
503465 TATATTATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
28 7 0.21
29 10 0.30
30 3 0.09
31 13 0.39
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (30 bp):
ATATTTATATAATTTTTAATATATATTAAA
Found at i:503881 original size:11 final size:10
Alignment explanation
Indices: 503864--503921 Score: 50
Period size: 11 Copynumber: 5.7 Consensus size: 10
503854 CATTTAATTC
503864 TTAAAAATAA
1 TTAAAAATAA
503874 TATAAAAAT-A
1 T-TAAAAATAA
503884 TT-AAAAT-A
1 TTAAAAATAA
503892 TATAAAAATAA
1 T-TAAAAATAA
*
503903 TTATAATATAA
1 TTA-AAAATAA
503914 TTTAAAAA
1 -TTAAAAA
503922 AAATGATAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
8 7 0.17
9 2 0.05
10 10 0.25
11 18 0.45
12 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
TTAAAAATAA
Found at i:503891 original size:19 final size:20
Alignment explanation
Indices: 503867--503921 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 20
503857 TTAATTCTTA
503867 AAAATAATATAAAAAT-ATT
1 AAAATAATATAAAAATAATT
503886 AAAAT-ATATAAAAATAATT
1 AAAATAATATAAAAATAATT
*
503905 ATAATATAATTTAAAAA
1 A-AA-ATAATATAAAAA
503922 AAATGATAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 10 0.32
19 9 0.29
20 2 0.06
21 2 0.06
22 8 0.26
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATAATATAAAAATAATT
Found at i:504941 original size:31 final size:31
Alignment explanation
Indices: 504903--504962 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
504893 TATAAATCTA
504903 TATCATGAAAATTTCAAAAGAAAATAAAATC
1 TATCATGAAAATTTCAAAAGAAAATAAAATC
504934 TATCATGAAAATTTCAAAAGAAAATAAAA
1 TATCATGAAAATTTCAAAAGAAAATAAAA
504963 GCATCGGAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.60, C:0.08, G:0.07, T:0.25
Consensus pattern (31 bp):
TATCATGAAAATTTCAAAAGAAAATAAAATC
Found at i:505248 original size:13 final size:14
Alignment explanation
Indices: 505226--505258 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
505216 TTACTCTTGC
*
505226 CTTTTATTTTTTCT
1 CTTTTTTTTTTTCT
505240 -TTTTTTTTTTTCT
1 CTTTTTTTTTTTCT
505253 CTTTTT
1 CTTTTT
505259 CATTCCTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (14 bp):
CTTTTTTTTTTTCT
Done.