genome.fa.s1991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1991
Parameters: 2 7 7 80 10 50 1000
Length:  80601

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023--1097	33	2.3	33	97	0	141	33	20	9	37	1.84
2948--3013	24	2.8	24	66	0	69	45	3	24	27	1.68
3623--3696	20	3.8	19	84	8	87	31	13	17	37	1.89
3740--3792	13	4.5	13	69	26	55	33	13	15	37	1.86
3727--3791	33	2.0	33	90	6	105	33	13	15	36	1.87
3760--3934	72	2.4	72	98	0	332	35	13	14	36	1.86
9569--9614	22	2.1	22	100	0	92	36	8	17	36	1.81
13165--13237	16	4.6	16	70	10	51	21	9	19	49	1.76
15534--15558	13	1.9	13	100	0	50	36	16	16	32	1.90
15511--15578	33	2.1	33	91	2	111	33	14	16	35	1.89
15632--15681	20	2.5	20	86	0	64	38	16	16	30	1.90
17926--17966	22	2.0	21	86	13	59	41	4	21	31	1.74
18100--18136	13	2.8	13	91	0	56	37	10	16	35	1.83
24290--24340	20	2.6	20	90	3	77	29	13	17	39	1.88
37523--37589	20	3.2	20	68	15	55	46	10	7	35	1.66
37531--37592	20	3.0	20	77	13	72	41	9	8	40	1.67
40164--40212	6	8.7	6	73	13	50	0	20	0	79	0.73
40163--40223	23	2.6	24	79	7	63	0	26	0	73	0.83
40182--40221	17	2.4	16	87	4	53	0	32	0	67	0.91
40176--40223	23	2.0	23	88	4	69	0	31	0	68	0.90
43697--43817	52	2.3	52	97	0	224	28	18	18	34	1.94
43697--43837	52	2.7	51	90	4	212	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43826--43850	13	1.9	13	100	0	50	36	16	16	32	1.90
43915--43939	13	1.9	13	100	0	50	32	16	16	36	1.90
44717--44843	67	1.9	68	83	1	166	39	12	25	22	1.89
44809--45117	55	5.6	55	73	14	240	36	15	23	24	1.93
44723--45117	171	2.3	171	94	1	682	37	14	24	24	1.92
45075--45953	49	19.0	43	71	19	539	32	17	25	24	1.97
45031--45453	95	4.4	95	90	4	581	30	17	26	24	1.97
45031--45452	49	8.8	49	83	8	537	31	18	26	24	1.97
45356--45672	116	2.9	114	76	18	307	35	15	24	24	1.95
45530--46002	49	9.8	49	80	11	532	31	17	25	24	1.97
45526--46002	92	5.0	93	93	4	724	32	17	25	24	1.97
45806--46002	52	3.8	52	87	4	301	31	17	27	23	1.97
46007--46099	33	2.8	33	93	6	163	15	19	36	29	1.92
46088--46530	34	13.5	34	77	16	395	30	12	35	20	1.91
46105--46559	63	7.1	64	83	10	449	30	13	34	21	1.92
46342--46461	61	2.0	61	94	0	213	26	15	36	21	1.93
46212--46497	95	3.1	95	92	4	458	28	13	36	21	1.91
46472--46554	31	2.7	31	86	3	105	25	16	31	26	1.97
47499--47525	1	27.0	1	100	0	54	0	0	0	100	0.00
54809--54929	52	2.3	52	97	0	224	28	18	18	34	1.94
54809--54949	52	2.7	51	90	4	212	30	17	18	33	1.94
54938--54962	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55027--55051	13	1.9	13	100	0	50	32	16	16	36	1.90
56640--57146	104	4.9	103	82	4	576	37	16	22	22	1.94
56636--57142	208	2.4	207	84	4	637	36	16	23	22	1.94
56636--57152	52	10.0	52	70	6	291	37	16	23	22	1.93
57302--58428	34	34.8	34	71	16	346	37	11	29	22	1.88
57281--57485	60	3.3	61	77	12	202	35	12	29	21	1.91
57349--57527	94	1.9	94	90	0	286	38	11	28	21	1.88
57302--57862	162	3.4	162	76	8	515	38	11	28	21	1.88
57782--58056	130	2.1	128	81	8	308	35	9	31	24	1.86
58024--58083	27	2.2	27	85	5	77	36	11	30	21	1.89
57957--58209	61	4.1	60	75	11	197	39	9	28	22	1.86
58119--58236	27	4.2	27	75	9	101	38	12	27	22	1.90
58178--58322	61	2.4	62	82	3	168	37	12	28	20	1.89
58238--58298	27	2.3	27	73	0	68	36	13	29	21	1.91
58301--58433	67	2.0	66	89	4	205	37	12	29	21	1.89
58402--58474	27	2.7	27	86	0	101	32	13	31	21	1.93
59824--59888	8	7.9	8	74	16	53	4	3	9	83	0.90
59822--59902	29	2.6	30	78	19	87	3	2	11	82	0.89
59822--59901	31	2.6	30	77	16	83	3	2	11	82	0.89
59808--59927	49	2.4	50	77	5	127	4	7	12	75	1.15
63406--63476	37	1.9	37	94	0	124	35	7	9	47	1.64
69471--69744	147	1.9	147	97	0	521	31	15	22	30	1.95

Tables:   1

The End!