genome.fa.s1996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1996
Parameters: 2 7 7 80 10 50 1000
Length:  77693

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257--294	13	2.9	13	96	0	67	28	18	15	36	1.92
731--772	20	2.0	20	86	4	57	19	45	28	7	1.76
5429--5467	13	3.0	13	92	0	60	35	12	17	33	1.88
7533--7568	15	2.4	15	90	0	54	16	19	13	50	1.79
12838--12862	13	1.9	13	100	0	50	32	16	16	36	1.90
12818--12885	33	2.1	32	88	2	100	35	14	14	35	1.87
15559--15599	22	2.0	21	86	13	59	41	4	21	31	1.74
15731--15769	13	3.0	13	92	0	69	33	15	20	30	1.94
20757--20923	20	7.8	21	70	20	89	40	13	16	29	1.87
20662--20794	71	1.9	70	87	4	196	40	12	15	31	1.84
20710--20884	51	3.6	51	73	18	185	42	12	16	29	1.84
20686--20934	91	2.7	91	93	0	419	40	13	16	29	1.86
22262--22307	22	2.0	23	84	12	60	69	6	4	19	1.28
23051--23087	2	19.0	2	88	5	58	48	0	0	51	1.00
29603--29656	21	2.6	21	82	8	58	48	0	7	44	1.31
33456--33513	7	8.0	7	74	14	55	79	3	0	17	0.87
33456--33526	34	2.0	37	89	8	112	76	4	0	19	0.96
34191--34225	18	1.9	18	100	0	70	25	40	17	17	1.90
34295--34481	102	1.8	102	85	0	266	23	41	18	17	1.90
42365--42410	20	2.3	20	96	0	83	39	19	10	30	1.86
42827--42912	13	5.9	13	69	30	59	33	12	18	34	1.89
42807--42933	32	4.0	32	91	7	215	33	11	18	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42807--42929	61	2.0	62	95	3	221	33	11	18	36	1.87
42950--43004	19	2.9	19	97	0	101	40	12	10	36	1.79
42991--43015	13	1.9	13	100	0	50	32	16	16	36	1.90
46524--46600	36	2.1	36	97	0	145	16	9	15	58	1.62
52954--54052	42	26.2	42	77	5	886	14	28	19	36	1.92
54021--54104	43	2.0	43	81	6	100	13	20	19	47	1.82
54526--54590	17	3.7	18	72	15	55	75	3	1	20	1.02
54519--54597	28	2.9	27	73	15	74	74	2	1	21	1.01
54641--54723	43	2.0	41	85	4	112	25	24	21	28	1.99
55280--55374	49	2.0	48	85	2	127	28	41	15	14	1.87
55427--55512	30	2.8	31	77	8	95	29	39	12	18	1.88
55480--55570	22	4.3	22	68	16	66	29	43	12	14	1.81
55541--55630	31	2.9	31	88	0	126	22	41	20	16	1.90
55601--55667	22	3.2	22	83	8	79	22	44	20	11	1.84
63783--64022	97	2.5	95	85	5	329	28	29	13	28	1.94
67166--67293	52	2.5	52	94	3	224	30	17	17	33	1.94
67302--67326	13	1.9	13	100	0	50	36	16	16	32	1.90
67392--67449	13	3.9	13	73	26	53	32	15	13	37	1.87
67405--67470	20	3.7	20	71	26	74	34	13	12	39	1.82
67370--67469	33	3.0	33	92	0	155	38	13	12	37	1.81
71907--72027	52	2.3	52	95	0	215	28	19	18	34	1.95
71907--72047	52	2.7	52	87	4	196	29	18	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72036--72060	13	1.9	13	100	0	50	36	16	16	32	1.90
72125--72149	13	1.9	13	100	0	50	32	16	16	36	1.90
72103--72169	33	2.0	33	88	0	98	40	13	11	34	1.81
73046--73976	49	19.7	49	84	8	1193	30	18	25	25	1.98
73037--73981	92	10.1	92	91	3	1338	30	17	26	24	1.97
73476--73541	22	3.0	22	63	20	57	31	21	22	24	1.98
73469--73536	21	3.2	21	63	19	50	32	17	25	25	1.97
73976--74045	33	2.1	35	94	5	126	20	17	37	25	1.94
74055--74821	34	23.6	33	79	14	773	30	12	35	21	1.91
74082--74830	160	4.6	160	83	11	796	31	12	34	21	1.91
74477--74526	26	1.9	26	95	0	91	18	18	38	26	1.93
74030--74821	97	8.1	96	80	12	750	30	12	35	21	1.91
74823--74909	29	2.9	30	84	3	113	35	19	26	18	1.95
74823--74943	60	2.0	62	84	9	160	32	19	27	21	1.97
74050--74911	34	26.8	31	78	12	256	31	13	34	21	1.92
74565--74944	31	11.9	31	78	10	132	31	14	32	22	1.94
75972--76005	14	2.3	15	90	5	52	0	8	5	85	0.75

Tables:   1

The End!