Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5794061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 68655 characters in sequence are not A, C, G, or T
File 1 of 38
Found at i:1240 original size:451 final size:451
Alignment explanation
Indices: 398--1293 Score: 1198
Period size: 451 Copynumber: 2.0 Consensus size: 451
388 ATTTGACTAT
* * * *
398 TCATGTTTGTTTTATTTAAGACAAAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGACAAAAACTTTGAATCTATCAAAAATGATGGAAAGAAAAGCTTTT
* * * **
463 CTTGCGACCCCAATGCATCAATATCATGTATCCTAATGAAAGGAATATGTTTTGCCTTTTTAATC
66 CTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATGTTTTGCCTTCCTAATC
*
528 TTGAAAAAATAGAGACGGTTACAATTGATGCTTATCCTATTTAAGGATGAACTTAGATTTTAAGG
131 TTGAAAAAATAGAGACGGTTACAATTGATGCTTATCCTATTTAAGGATAAACTTAGATTTTAAGG
** * *
593 AAAATAAGGCAAAGAATTGATTTCCGTGCAAAAAAAAATCATCTATATCATTTATCCTAATGAGG
196 AAAATAAGGCAAAGAAACGATTTCCGTGCAAAAAAAAATCATCAATATCATTTATCCTAACGAGG
* * * *
658 AGAATGTGTTTATAGTGCCTAATCACAAATGAATGAAGATCATTTCTAGAATCCATGTTTTACTC
261 AGAATGTGTTTATAGTGCCTAATCACAAAGGAATGAAGATCATTACTAGAATCCATGTTTAACTA
723 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAAGCCTTTCTTGCGAAAACCA
326 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAAGCCTTTCTTGCGAAAACCA
* *
788 AA-GCATCAATATCCTGTATCCTTATGAG-AAGACTATGTTTATGGTGCCTAATCCTAGCTAC
391 AAGGCATCAATATCCTGTA-CCTAATGAGAAAGACTATG-TTATGGTACCTAATCCTAGCTAC
* *
849 TCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAATGATGGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGACAAAAACTTTGAATCTATCAAAAATGATGGAAAGAAAAGCTTTT
* ** * * * * * *
914 CTTGCAATAGTAAAGCATTAATGTCATGTATCCTATTGAAGGGAATGTGTTTTAGGC-TCCTAAT
66 CTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATGTTTT-GCCTTCCTAAT
* * * * *
978 CTTGAAAAGAATGGAGACGTTTACGAGATTCGATGCTTGTCTTATTTAAGAGATAAACTTTGATT
130 CTTGAAAA-AATAGAGACGGTTAC-A-ATT-GATGCTTATCCTATTTAAG-GATAAACTTAGATT
* * * *
1043 TTAAGGAAAATAGGGTAAAGAAACGATTTTC-TGCAAAAGAAAATCATCAATATCATTT-TCCTA
190 TTAAGGAAAATAAGGCAAAGAAACGATTTCCGTGCAAAAAAAAATCATCAATATCATTTATCCTA
* *
1106 ACGAGGAGAATGTGTTTATAGTGCCT-ATCACAAAAGGAATGATGATCATTACTCGAATCCATG-
255 ACGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAGGAATGAAGATCATTACTAGAATCCATGT
* * * *
1169 TTAACTAATTTGATGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAA-CCTTTCTTGCG
319 TTAACTAATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAAGCCTTTCTTGCG
* * **
1233 -AAACCAAAGGCATCATTGTTGTGTACCTAATGAGAAAGACTATGTTATGGTACCTAATCCT
384 AAAACCAAAGGCATCAATATCCTGTACCTAATGAGAAAGACTATGTTATGGTACCTAATCCT
1294 GAAAGAATTC
Statistics
Matches: 386, Mismatches: 50, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
451 146 0.38
452 47 0.12
453 53 0.14
454 60 0.16
455 42 0.11
456 38 0.10
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (451 bp):
TCATGTTTGTCTTATTTAAGACAAAAACTTTGAATCTATCAAAAATGATGGAAAGAAAAGCTTTT
CTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATATGTTTTGCCTTCCTAATC
TTGAAAAAATAGAGACGGTTACAATTGATGCTTATCCTATTTAAGGATAAACTTAGATTTTAAGG
AAAATAAGGCAAAGAAACGATTTCCGTGCAAAAAAAAATCATCAATATCATTTATCCTAACGAGG
AGAATGTGTTTATAGTGCCTAATCACAAAGGAATGAAGATCATTACTAGAATCCATGTTTAACTA
ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAAGCCTTTCTTGCGAAAACCA
AAGGCATCAATATCCTGTACCTAATGAGAAAGACTATGTTATGGTACCTAATCCTAGCTAC
Found at i:5637 original size:19 final size:21
Alignment explanation
Indices: 5600--5643 Score: 65
Period size: 19 Copynumber: 2.1 Consensus size: 21
5590 GTTAAGTATA
5600 AATGTTTTTCAAGCATAAAAAT
1 AATGTTTTTCAAG-ATAAAAAT
5622 AATG-TTTTCAAG-TAAAAAT
1 AATGTTTTTCAAGATAAAAAT
5641 AAT
1 AAT
5644 CCAAAGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (21 bp):
AATGTTTTTCAAGATAAAAAT
Found at i:5894 original size:33 final size:33
Alignment explanation
Indices: 5851--5927 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
5841 AACTTACTTA
*
5851 GTATCGATACAGTGTATCGATACATGGTCAAAT
1 GTATCGATACAGTATATCGATACATGGTCAAAT
* * **
5884 GTATCAATACATTATATCGATAGGTGGTCAAAT
1 GTATCGATACAGTATATCGATACATGGTCAAAT
5917 GTATCGATACA
1 GTATCGATACA
5928 ATGAGCCCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (33 bp):
GTATCGATACAGTATATCGATACATGGTCAAAT
Found at i:9459 original size:19 final size:20
Alignment explanation
Indices: 9425--9463 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
9415 GTATAATTGT
9425 TTTTCAAGCATAAAAATAATG
1 TTTTCAAG-ATAAAAATAATG
9446 TTTTCAAG-TAAAAATAAT
1 TTTTCAAGATAAAAATAAT
9464 CCAAATATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (20 bp):
TTTTCAAGATAAAAATAATG
Found at i:9702 original size:13 final size:13
Alignment explanation
Indices: 9671--9740 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 13
9661 ACTTACTCAG
* *
9671 TATCGATACAGTG
1 TATCGATACATTA
*
9684 TTTCGATACATTA
1 TATCGATACATTA
9697 TATCGATACATGGTCAAA
1 TATCGATACAT--T---A
9715 TGTATCGATACATTA
1 --TATCGATACATTA
9730 TATCGATACAT
1 TATCGATACAT
9741 GGTCAAATCT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
13 31 0.67
15 2 0.04
18 2 0.04
20 11 0.24
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:9722 original size:20 final size:19
Alignment explanation
Indices: 9697--9760 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 19
9687 CGATACATTA
9697 TATCGATACATGGTCAAAT
1 TATCGATACATGGTCAAAT
9716 GTATCGATACAT--T---A-
1 -TATCGATACATGGTCAAAT
9730 TATCGATACATGGTCAAAT
1 TATCGATACATGGTCAAAT
9749 CTATCGATACAT
1 -TATCGATACAT
9761 TGAGCCCAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
18 2 0.05
20 22 0.59
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (19 bp):
TATCGATACATGGTCAAAT
Found at i:9728 original size:33 final size:33
Alignment explanation
Indices: 9686--9761 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
9676 ATACAGTGTT
*
9686 TCGATACATTATATCGATACATGGTCAAATGTA
1 TCGATACATTATATCGATACATGGTCAAATCTA
9719 TCGATACATTATATCGATACATGGTCAAATCTA
1 TCGATACATTATATCGATACATGGTCAAATCTA
9752 TCGATACATT
1 TCGATACATT
9762 GAGCCCAACG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (33 bp):
TCGATACATTATATCGATACATGGTCAAATCTA
Found at i:9804 original size:43 final size:43
Alignment explanation
Indices: 9750--9847 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
9740 TGGTCAAATC
9750 TATCGATACATTGAGCCCAACGACTATAAATTTCAAATACTTG
1 TATCGATACATTGAGCCCAACGACTATAAATTTCAAATACTTG
* * *
9793 TATCGACACATTGATCCCAACGGCTATAAATTTCAAATACTTG
1 TATCGATACATTGAGCCCAACGACTATAAATTTCAAATACTTG
9836 TATCGATACATT
1 TATCGATACATT
9848 ATGAAAAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (43 bp):
TATCGATACATTGAGCCCAACGACTATAAATTTCAAATACTTG
Found at i:11480 original size:81 final size:81
Alignment explanation
Indices: 11340--11498 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 81
11330 CTAAAAAGAA
* * * *
11340 TGGGGATTAATATGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAAC
1 TGGGGATTAATATAACTATTAATGTTTGTCTTATATAAAAGAAAAACTTTGATTCTATCAAAAAC
*
11405 GGTGGAAAGAAAATAG
66 GGTGAAAAGAAAATAG
* * * *
11421 TGGGGATTAGTATAAGTATTAATGTTTGTCTTATTTAAAAGAAAAACTTTGATTTTATCAAAAAC
1 TGGGGATTAATATAACTATTAATGTTTGTCTTATATAAAAGAAAAACTTTGATTCTATCAAAAAC
11486 GGTGAAAAGAAAA
66 GGTGAAAAGAAAA
11499 GCTTTTCATG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (81 bp):
TGGGGATTAATATAACTATTAATGTTTGTCTTATATAAAAGAAAAACTTTGATTCTATCAAAAAC
GGTGAAAAGAAAATAG
Found at i:12353 original size:476 final size:476
Alignment explanation
Indices: 11421--16743 Score: 5882
Period size: 476 Copynumber: 11.2 Consensus size: 476
11411 AAGAAAATAG
* * * * * *
11421 TGGGGATTAGTATAAGTATTAATGTTTGTCTTATTTAAAAGAAAAACTTTGATTTTATCAAAAAC
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * * * *
11486 GGTGAAAAGAAAAGCTTTTCATGTGATAGCTAAGCATTAATGTCATGTATCCTAATGAAGGGAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
** * * * * * *
11551 GCATTTTTGGTTCCCAATGTTGAAAAGAATGGAGACTGTTACGATAATCAATG-TTAGTCTTATT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCAT-GTCTTATT
* * * * ** ** *
11615 TAAGGTAAGAACTTTGATTT-AATGAAAATAGGGCAAAGAAAAGATTACTTTGTGAAAGAAAATC
195 TAAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATC
*
11679 ATC-A-ATCATTTATCCAAAT-ATGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
260 ATCTATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * *
11741 ATCATTAGTAGAATCCATGTTTATCTGATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCTA
324 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTG-TA
* * * * * * * * *
11806 -GAAAAAAGCCTTTTTTGTGAAACTAAAGCAACAGTATCATGTATACTTATGAGAAGACTGTGTT
388 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
11870 TATGGTGCCTAATCTTGAAAAGAA
453 TATGGTGCCTAATCTTGAAAAGAA
* * * * * * *
11894 TGGGGTTTTGTACGACTATTAAAGTTTCTCTTTTTTAAATGACAAACTTTAATTCTATAAAAAAC
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * * *
11959 GGTGGAAAGAAAAGCTTGTCTTGTGACAACAAAACATCAATGTCATGTATCCTAATGAAGAGAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * * ** * *
12024 CTATTTTTGGTTCCCTATCTTGAAAAGAATAGAGAGTATTGTAAGAATCGATGCACGTCATATTT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATTT
* * *
12089 AAGGAAAGAATTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATTCAAAATAAAATCT
196 AAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATCA
* *
12154 TCTGTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
261 TCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * *
12219 CATTACTAGAATCCAAGTATGTCTTCTTTGAGGAACGAGCTTAGACTTTACAAAAGTTTGTTGGA
326 CATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAGGA
*
12284 AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTACCCTAATGAGAAGACTATGTTTAT
391 AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
*
12349 GGTGCTTAATCTTGAAAAGAA
456 GGTGCCTAATCTTGAAAAGAA
* * * *
12370 TAGGGATTAT-TATGACTATTCATGTTTATCTT-TTT---TAACAAACTTTGATTCTATCAAAAA
1 TGGGGATT-TGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAA
* * * * * * *
12430 TGATGAAAAGAAAATCTTTTCTTGCAACAGCAATGCATAAATGTCATGTATCCTAATGAAGGGAA
65 CGGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * ** * *
12495 TGTGTTTTTGGTTCCTAATCTTGAAAGGAATGCTGAGTGTTGCAAGAATCGATGCTTGTCTTATT
130 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATT
*
12560 TAAGGAAAGAACTTTCATTT-------AA-AGGGCAAAGAAATGGTTACCATGCAAAATAAAATC
195 TAAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATC
*
12617 ATCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGA
260 ATCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * * * **
12682 TCATTACTAGAATCTATGTTGGT-TTGATTTGAGGCACAAACTTAGACTTTACAAAAA-TTGGCG
325 TCATTACTAGAATCCATGTTTGTCTT-ATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAG
* * * * *
12745 AGAAGAAAGCTTTTCTTGCAAAACCAAAGCATTAATATCATGTATCCTTATGAGAAAACTATGTT
389 -GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
* *
12810 TATGGTGCCTAATCCTAAAAAGAA
453 TATGGTGCCTAATCTTGAAAAGAA
* * * *
12834 TGGGGATTTGTATGACTATTAATATTTGTCTTATTTAAGTGACAAACTTTGATTCGATCAAAAAT
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * * * *
12899 GGTGGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAACGCCATGTATCTTAATGAAGGGAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * ** * * *
12964 GTGTTTTTTGTTCCCAATCTTGAAAAGAATTGAAACTGTTATGAGAATTGAAG-ATTGTTTTATT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCA-TGTCTTATT
** * ** * * *** ** * * *
13028 TCCGGGATTAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAAATTTTCAAGTAGCAA-AAAAT
195 TAAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCA-AAATAAAAT
* * * * * ** *
13092 CATCAATAGCATTTATCCTAATGAAGAGAATGTGTCTATAGTGCCTAATTACAAAATGAAAAAAA
259 CATCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
13157 AACATTGCTAGAATCCATG--TGTCTTATTTGAAGAACGAACTTAGACATTACAAAAATTTATAG
324 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAG
** * * *
13220 GAAGAAAGCCTTTCTTGCG-AACACAAAATATCAACATCATGCATCCTAAAGAGAAGACTATGTT
389 GAAGAAAGCCTTTCTTGCGAAAC-CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
13284 TATGGTGCCTAATCTTGAAAAGAA
453 TATGGTGCCTAATCTTGAAAAGAA
* * * *
13308 TGAGGATTTGTATGACTATTCATTTTTGTCTTATTTAAATGAAAAACTTTGATTCTATCAAAAAC
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * * * *
13373 GGTGGAAATAAAATCTTTTCTTGTGACAACATAGCATCAATGTCATGTATCCTAATGAAGGTAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * *
13438 GTGTTTTTGG-TCCTAATCATGAAAAGAATGGAGAGTGTTACAAGAATCGATGCTTGTCTTATTT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATTT
*
13502 AAGGAAAGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAATGGTTACCATGCAAAATAAAATCA
196 AAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATCA
* * * * *
13567 TCTATATCATTTATCGTAATGAGGAGGATGTGTTTATAGTGCATAATCACAACATGAAAGAAGAT
261 TCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * * *
13632 CATTGCTAGGATCTATGTTTGTCTGATTTGA-GACACGAACTTATACTTTACAAAAATTGGCCA-
326 CATTACTAGAATCCATGTTTGTCTTATTTGAGGA-ACGAACTTAGACTTTACAAAAATTTG-TAG
* *
13695 GAAGAAAGCCTTTCTTGCG-AATCAAAGCATCAATATCGA-GTATCCTTATGAGAAGACTATGTT
389 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-ATGTATCCTAATGAGAAGACTATGTT
* *
13758 TATGGTGCCTAATCCTAAAAAGAA
453 TATGGTGCCTAATCTTGAAAAGAA
** * *
13782 AAGGGATTTGTTTGACTATTAATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCGATCAAAAA
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA-ATGACAAACTTTGATTCTATCAAAAA
* * * * * * *
13846 TGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTAATGTATCCAAATGAAGGGAA
65 CGGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
** * * * ** ** * *
13911 TGCATTTTTTGTTCCCAATCTTGAAAAGAATTGAGATTGTTATGAGAATTAAAG-ATTGTCTTTT
130 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCA-TGTCTTAT
* * * ** ** * ** *
13975 TTCAAGG-ATGAAC-TTGATTTTAAGGAAAATATGGCAAAGAAA-AATTTTCATGTAGCAGAAAA
194 TT-AAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAA
* * * *
14037 TCAT-TAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCGAATCA-TAAATGAATAA
258 TCATCT-ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * *
14100 AGATCATTACT-GTAGTCCATGCTTGTATTATTTGAGGAACCAACTTAGATTTTACAAAAATTTA
322 AGATCATTACTAG-AATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTG
* * * *
14164 TGGGAAGAAGGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAGGACTATG
386 TAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
14229 TTTATGGTGCCTAATCTTGAAAAGAA
451 TTTATGGTGCCTAATCTTGAAAAGAA
** * * * *
14255 TGGGGATTAATATGACTATTCATGTTTGTCTTATTTAAATGACAAACTTTAATTCTATAAAAAAT
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * * *
14320 GGTGGAAAGAAAAGCATTTCTTTCGACAGTAAAGCATCAATGTGATGTATCCTAATGAAGGAAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * *
14385 GTGTTTTTGGTTCTCAATCTTGAAAATAATGGAGAGTGTTACAAGAATCTATGCTTGTCTTATTT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATTT
* *
14450 AAGGAAAGAACTTTGATTCAAAAGAAAATAGGGCAAAGAAATGGTTTA-CATGCAAAATAAAATC
196 AAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGG-TTACCATGCAAAATAAAATC
** * * * *
14514 ATCCGTATCATTTATCCTAATAAAGAGAATGTGCTTATTA-TGCCTAATCATAAAATGAATGAAG
260 ATCTATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAG
* * *
14578 ATCATTACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAG
324 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAG
* * * *
14643 GAAGAAAGCCTTTTTTGCAAAACAAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
389 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * *
14708 ATGGTGCCAAATCCTGAAAATAA
454 ATGGTGCCTAATCTTGAAAAGAA
* * * * *
14731 TAGGGATTTGTATGACTATTAATGTTTTTCATATTTAAGA-GACAAACTTTGATTCAATCAACAA
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA-ATGACAAACTTTGATTCTATCAAAAA
* ** * *
14795 TGGTGGAAAGAAAAGCTTTTCTTGAAACA-CTAAAGCATCAATGTAATGTATCCAAATGAAGGGA
65 CGGTGGAAAGAAAAGCTTTTCTTGCGACAGC-AAAGCATCAATGTCATGTATCCTAATGAAGGGA
** ** * * * ** * *
14859 ATGCATTTTTCTTTCCTAATCTTGAAAAGAATTGAGATTGTTATGAGAATTGAAG-ATTGTCTTA
129 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCA-TGTCTTA
* * * ** ** ** *
14923 TTTCAAGG-AGGAAATTTGATTTTAAA-GAAAATATGGCAAAGAAA-AATTTTCATGCAGCAGAA
193 TTT-AAGGAAAGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAA
* * *
14985 AATCAT-TAATATCATTTATCCTACTGAGCAGAATGTGTTTATAGTGCCGAATCAC-AAATGAAT
256 AATCATCT-ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * * *
15048 AAAGATCATTACTATAGTCCATGTTTGTATTTTTTGAGAAACTAACTTAGATTTTACAAAAATTT
320 GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTT
* * * * *
15113 -AATGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAACATCATGTGTCCTAAAGAGAAGACTA
385 GTA-GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
* *
15177 TGTTTATGGTGCCTAATTTTGAAAGGAA
449 TGTTTATGGTGCCTAATCTTGAAAAGAA
* * * *
15205 TGAGTATTAGTATGACTATTAATGTTTGCCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
** * * * *
15270 GGTGGAAAGAAAATATTTTCTTGC-ATAGTAAAGCATCAATGTCTTGTATACTAATGAAGGGAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
** * *
15334 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAGCCAATGCTTGTCTTATTT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATTT
* * * *
15399 AAGGAAAAAACTTTGGA-TTAAAGGAAAATAAGGCAAAAAAATAGTTACCATGCAAAATAAAATC
196 AAGGAAAGAACTTT-GATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATC
* * *
15463 ATGTGA-ATCGTTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
260 ATCT-ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * * *
15527 ATCATTTCTAGAATCCATGTTTGTCTTATTCGAGGAATGAACTTAAACTTTACAAAAATGTATGG
324 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAG
* * * *
15592 GAAGAAAGCCTTTCTTGCAAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGCCTATGTTT
389 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
15657 ATGGTGCCTAATCTTGAAAAGAA
454 ATGGTGCCTAATCTTGAAAAGAA
* * * * * * *
15680 TGGGGATTAGTATAACTATTCATGTTTATCTTACTTAAACGACAAACTTTCATTCTATCAAAAAC
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * *
15745 AGTGGAAAGAAAAGCTTTTCTTGCAACAGCAAAGCATCAATGTCATGTATCTTGATGAAGGGAAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * *
15810 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTGCAAGAATCGATGCTTGTCATATTT
131 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATTT
* *
15875 AAGGGAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATCG
196 AAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATCA
* * *
15940 TCTGTATCATTTATCCTAATGAGGAGAATGTATTTATCGTGCCTAATCACAAAATGAATGAAGAT
261 TCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * ** *
16005 CATTACTAGAATCCATGTTTCTCTGATTTG-GGGATGAACTTAGACTTTACAAAACTCAGTAGAA
326 CATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAGGA
* * *
16069 AGAAAGCCGTTCTTGCGAAACCAAAGCATCAATA--GTGTATGTCCTTATGAGAAGACTATGTTT
391 AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA--TCCTAATGAGAAGACTATGTTT
* *
16132 ACGGTGCCTAATCCTGAAAAGAA
454 ATGGTGCCTAATCTTGAAAAGAA
* *
16155 TGGAGATTTGTATGACTATTAATGTTTGTCATATTTAAGA-GACAAACTTTGATT-TGATCAAAA
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA-ATGACAAACTTTGATTCT-ATCAAAA
* * * * * *
16218 ATGGTGGAAGGAAAAGCTTTTCTTGCGACAACAAAGCATCAATGTCATGTATCCGAATGAATGTA
64 ACGGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* * * * * *** * *
16283 ATGTGTTTTTTGTTCCTAATCTTGAAAAAAAACT-GAGATTATTATGGGAATTGAAG-ATTGTCT
129 ATGTGTTTTTGGTTCCCAATCTTG-AAAAGAA-TGGAGAGTGTTACAAGAATCGATGCA-TGTCT
* * * * *** * ** *
16346 TGTTTCAAGG-ATGAACTTTGATTTTAAA-GAATATA-TGCAAAGAAA-AACTATTCATGCCGAG
191 TATTT-AAGGAAAGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAATGGTTA-CCATGCAAAA
* * * * *
16407 GAAAGTCATCAATATCATTTATCCTTATGAGGAGAATGTGTTTATGGTGCCTAATCAC-AAATGA
253 TAAAATCATCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
16471 ATGAAGATCATGACTAGAATCCATGTTTTTCTTGTTTGAGGAACGAACTTAGACTTTACAAAAAT
318 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAAT
* * ** * *
16536 TTGTGGGAAAAAAGTGTTTCTTGCGAAACCAAAGCATCAACATCATGTATCCTAAAGAGAAGACT
383 TTGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
*
16601 ATGTTTATGGTGCCTAATTTTGAAAAGAA
448 ATGTTTATGGTGCCTAATCTTGAAAAGAA
* * * * *
16630 TGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAATGATAAACTTTGTTTCTATCAAAAAC
1 TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
* * * * *
16695 GATGGAAA-AAAATCTTTTCTTGCGATAGTAAAGCACCAATGTCATGTAT
66 GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTAT
16744 ACTTACAAAA
Statistics
Matches: 4030, Mismatches: 729, Indels: 181
0.82 0.15 0.04
Matches are distributed among these distances:
463 7 0.00
464 245 0.06
465 5 0.00
468 141 0.03
471 1 0.00
472 234 0.06
473 729 0.18
474 839 0.21
475 882 0.22
476 917 0.23
477 30 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
TGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCGATGCATGTCTTATTT
AAGGAAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGGTTACCATGCAAAATAAAATCA
TCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
CATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTTGTAGGA
AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
GGTGCCTAATCTTGAAAAGAA
Found at i:13962 original size:159 final size:158
Alignment explanation
Indices: 11438--16717 Score: 812
Period size: 159 Copynumber: 33.4 Consensus size: 158
11428 TAGTATAAGT
* * * *
11438 ATTAATGTTTGTCTTATTTAAAAGAAAAACTTTGATTTTATCAAAAACGGT-GAAAAGAAAAGCT
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAAAATGGTAG-AAAGAAAAGCT
* ** * * * * * *
11502 TTTCATGTGATAGC-TAAGCATTAATGTCATGTATCCTAATGAAGGGAATGCATTTTTGGTTCCC
64 TTTCTTGCAACA-CAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCT
* * * * * *
11566 AATGTTGAAAAGAATGGAGACTGTTACGATA
128 AATCTTGAAAAGAATTGAGATTATTATGAGA
* * *
11597 ATCAATGTTAGTCTTATTTAAGGTA-AGAACTTTGATT-TAAT-GAAAATAGG--GCAAAGAAAA
1 ATTAATGTTTGTCTTATTTAAGG-ACA-AACTTTGATTCT-ATCAAAAAT-GGTAG-AAAGAAAA
* * * * * * ** * *
11657 GATTACTT-TGTG-AA-AGAAAATCATC-A-ATCATTTATCCAAAT-ATGGAGAATGTGTTTATA
61 GCTT--TTCT-TGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGCATTTTTG
** *
11716 GTGCCTAATC-ACAAAATGAA-TGAAGATCATTA-GTAGA
122 GTGCCTAATCTTGAAAA-GAATTG-AGATTATTATG-AGA
** * * * *
11753 ATCCATGTTTATCTGATTTGAGGCACAAACTTAGACTT-TA-CAAAAATTGGCTAG-AA-AAAAG
1 ATTAATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTCTATCAAAAA-TGG-TAGAAAGAAAAG
* * * * * * * * ** *
11814 CCTTTT-TTGTGAA-ACTAAAGCAACAGTATCATGTATACTTATG-AGAAGACTGTGTTTATGGT
62 -CTTTTCTTG-CAACACAAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGCATTTTTGGT
* * * * **
11876 GCCTAATCTTGAAAAGAA-TGGGGTTTTGTACGACT
124 GCCTAATCTTGAAAAGAATTGAGATTAT-TATGAGA
* * * * * * * *
11911 ATTAAAGTTTCTCTTTTTTAAATGACAAACTTTAATTCTATAAAAAACGGTGGAAAGAAAAGCTT
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* ** * * *
11976 GTCTTGTGACAACAAAA-CATCAATGTCATGTATCCTAATGAAGAGAAT-CTATTTTTGGTTCCC
65 TTCTTGCAAC-ACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGC-ATTTTTGG-TGCC
* * * *
12039 T-ATCTTGAAAAGAATAGAGAGTATTGTAAGA
127 TAATCTTGAAAAGAATTGAGATTATTATGAGA
** *** * * * * *
12070 ATCGATGCACGTCATATTTAAGGAAAGAATTTTGATT-TA-AAGGAAAATAGG--GCAAAGAAAT
1 ATTAATGTTTGTCTTATTTAAGGACA-AACTTTGATTCTATCA--AAAAT-GGTAG-AAAGAAAA
* ** * * * * ** * * ** * *
12131 GGTTACCATT-CAAAATAAAATCTTCTGTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG
61 GCTTTTC-TTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTG
** *
12195 CCTAATC-ACAAAATGAA-TGAAGATCATTACT-AGA
125 CCTAATCTTGAAAA-GAATTG-AGATTATTA-TGAGA
* * * * * * * * * * *
12229 ATCCAA-GTATGTCTTCTTTGAGGAACGAGCTTAGACTT-TA-CAAAAGTTTGTTGGAAG-AAAG
1 AT-TAATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTCTATCAAAA-ATGGTAGAAAGAAAAG
* * *
12290 CCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTACCCTAATG-A--GAA-GACTATGTTTATG
62 CTTTTCTTGC-AACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATG-C-AT-TTT-TG
* * * **
12350 GTGCTTAATCTTGAAAAGAATAGGGATTATTATGACT
122 GTGCCTAATCTTGAAAAGAATTGAGATTATTATGAGA
* * * * *
12387 ATTCATGTTTATCTT-TTTTA--ACAAACTTTGATTCTATCAAAAATGAT-GAAAAGAAAATCTT
1 ATTAATGTTTGTCTTATTTAAGGACAAACTTTGATTCTATCAAAAATGGTAG-AAAGAAAAGCTT
* * * ** *
12448 TTCTTGCAACAGC-AATGCATAAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTA
65 TTCTTGCAACA-CAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTA
* * ***
12512 ATCTTGAAAGGAATGCTGAG--TGTTGCAAGA
129 ATCTTGAAAAGAAT--TGAGATTATTATGAGA
** * * * * *
12542 ATCGATGCTTGTCTTATTTAAGGAAAGAACTTTCA-T-T-T---AAA-GG--GCAAAGAAATGGT
1 ATTAATGTTTGTCTTATTTAAGGACA-AACTTTGATTCTATCAAAAATGGTAG-AAAGAAAAGCT
** * * * * * * ** * *
12598 TACCATGCAAAATAAAATCATCTATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCT
64 TTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGCATTTTTGGTGCCT
* *
12662 AATCAT-AAAATGAA-TGAAGATCATTACT-AGA
128 AATCTTGAAAA-GAATTG-AGATTATTA-TGAGA
* * * *
12693 ATCT-ATGTTGGT-TTGATTTGAGGCACAAACTTAGACTT-TA-CAAAAATTGG-CGAGAAG-AA
1 AT-TAATGTTTGTCTT-ATTTAAGG-ACAAACTTTGA-TTCTATCAAAAA-TGGTAGA-AAGAAA
* * * * **
12752 AGCTTTTCTTGCAAAACCAAAGCATTAATATCATGTATCCTTATG-A--GAAAACTATGTTTATG
60 AGCTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGC-AT-TTT-TG
* * * * **
12814 GTGCCTAATCCTAAAAAGAATGGGGATT-TGTATGACT
122 GTGCCTAATCTTGAAAAGAATTGAGATTAT-TATGAGA
* * *
12851 ATTAATATTTGTCTTATTTAAGTGACAAACTTTGATTCGATCAAAAATGGTGGAAAGAAAAGCTT
1 ATTAATGTTTGTCTTATTTAAG-GACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* * *** * ** * * *
12916 TTCATGCAACACCAAAGCATCAACGCCATGTATCTTAATGAAGGGAATGTGTTTTTTGTTCCCAA
65 TTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTAA
* * *
12981 TCTTGAAAAGAATTGAAACTGTTATGAGA
130 TCTTGAAAAGAATTGAGATTATTATGAGA
* * ** ** * ** * *
13010 ATTGAA-GATTGTTTTATTTCCGGGATTAACTTTGATTTTAAGGAAAATATGG--CAAAGAAAAA
1 ATT-AATGTTTGTCTTATTT-AAGGACAAACTTTGATTCT-ATCAAAA-ATGGTAGAAAGAAAAG
* ** * * * * * * * ** * * *
13072 ATTTTCAAGTAGCAAAAAATCATCAATAGCATTTATCCTAATGAAGAGAATGTGTCTATAGTGCC
62 CTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCC
** *** * ** *
13137 TAAT-TACAAAATGAAAAAAAAACATTGCT-AGA
127 TAATCTTGAAAA-GAATTGAGATTATT-ATGAGA
** * * * * ** *
13169 ATCCATG--TGTCTTATTTGAAGAACGAACTTAGACAT-TA-CAAAAATTTATAGGAAG-AAAGC
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGA-TTCTATCAAAAA-TGGTAGAAAGAAAAGC
* * * * *
13229 CTTTCTTGCGAACACAAAA-TATCAACATCATGCATCCT-A--AAGAGAA-GACTATGTTTATGG
63 TTTTCTTGC-AACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATG-C-AT-TTT-TGG
**
13289 TGCCTAATCTTGAAAAGAA-TGAGGATT-TGTATGACT
123 TGCCTAATCTTGAAAAGAATTGA-GATTAT-TATGAGA
* * * * * * * *
13325 ATTCATTTTTGTCTTATTTAAATGAAAAACTTTGATTCTATCAAAAACGGTGGAAATAAAATCTT
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
** * * * **
13390 TTCTTGTGACA-ACATAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTGGT-CCTA
65 TTCTTGCAACACA-AAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTA
* * * * **
13453 ATCATGAAAAGAATGGAGAGTGTTACAAGA
129 ATCTTGAAAAGAATTGAGATTATTATGAGA
** * * * * *
13483 ATCGATGCTTGTCTTATTTAAGGAAAGAACTTTGATT-TA-AAGGAAAATAAGG--CAAAGAAAT
1 ATTAATGTTTGTCTTATTTAAGGACA-AACTTTGATTCTATCA--AAAAT--GGTAGAAAGAAAA
* ** * * * * * * * * ** * *
13544 GGTTACCATGCAAAATAAAATCATCTATATCATTTATCGTAATG-AGGAGGATGTGTTTATAGTG
61 GCTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGCATTTTTGGTG
* ** * * * * *
13608 CATAATC-ACAACATGAA-AGAAGATCATTGCT-AGG
125 CCTAATCTTGAA-AAGAATTG-AGATTATT-ATGAGA
* * *
13642 ATCT-ATGTTTGTCTGATTTGA-GACACGAACTTAT-ACTT-TA-CAAAAATTGGCCAG-AAG-A
1 AT-TAATGTTTGTCTTATTTAAGGACA--AACTT-TGA-TTCTATCAAAAA-TGG-TAGAAAGAA
* * *
13700 AAGCCTTTCTTGCGAA-TC-AAAGCATCAATATCGA-GTATCCTTATG-A--GAA-GACTATGTT
59 AAGCTTTTCTTGC-AACACAAAAGCATCAATATC-ATGTATCCTAATGAAGGGAATG-C-AT-TT
* * ** * * **
13758 TATGGTGCCTAATCCTAAAAAGAAAAGGGATT-TGTTTGACT
119 T-TGGTGCCTAATCTTGAAAAGAATTGAGATTAT-TATGAGA
*
13799 ATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAATGGTAGAAAGAAAAGCTT
1 ATTAATGTTTGTCTTATTTAAG-GACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* * * * * * * *
13864 TTCTTGCAACACCAAAGCGTCAATGTAATGTATCCAAATGAAGGGAATGCATTTTTTGTTCCCAA
65 TTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTAA
*
13929 TCTTGAAAAGAATTGAGATTGTTATGAGA
130 TCTTGAAAAGAATTGAGATTATTATGAGA
* * * ** * ** * *
13958 ATTAAAGATTGTCTTTTTTCAAGGATGAAC-TTGATTTTAAGGAAAATATGG--CAAAGAAAA-A
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCT-ATCAAAA-ATGGTAGAAAGAAAAGC
* * * * * * * * * *
14019 TTTTCATGTAGCAGAAAATCATTAATATCATTTATCCTAATG-AGGAGAATGCGTTTATAGTGCC
63 TTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGCATTTTTGGTGCC
* * * ** *
14083 GAATCAT-AAATGAATAAAGATCATTACTGTAG-
127 TAATCTTGAAAAGAATTGAGATTATTA-TG-AGA
** * * * * * * * * *
14115 -TCCATGCTTGTATTATTTGAGGAACCAACTTAGATTTTA-CAAAAAT-TTATGGGAAG-AAGGC
1 ATTAATGTTTGTCTTATTTAAGG-ACAAACTTTGATTCTATCAAAAATGGTA--GAAAGAAAAGC
* * * *
14176 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGAGGACTATG--TTTATGGTG
63 TTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAG-GGA--ATGCATTTTTGGTG
* * * **
14238 CCTAATCTTGAAAAGAATGGGGATTAATATGACT
125 CCTAATCTTGAAAAGAATTGAGATTATTATGAGA
* * * * * *
14272 ATTCATGTTTGTCTTATTTAAATGACAAACTTTAATTCTATAAAAAATGGTGGAAAGAAAAGCAT
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* * ** * * * ** *
14337 TTCTTTCGACAGTAAAGCATCAATGTGATGTATCCTAATGAAGGAAATGTGTTTTTGGT-TCTCA
65 TTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCT-A
* * * * **
14401 ATCTTGAAAATAATGGAGAGTGTTACAAGA
129 ATCTTGAAAAGAATTGAGATTATTATGAGA
* * ** *
14431 ATCT-ATGCTTGTCTTATTTAAGGAAAGAACTTTGATTC-AAAAGAAAATAGG--GCAAAGAAAT
1 AT-TAATGTTTGTCTTATTTAAGGACA-AACTTTGATTCTATCA-AAAAT-GGTAG-AAAGAAAA
* * * * * * ** * * * * *
14492 GGTTTACATGCAAAATAAAATCATCCGTATCATTTATCCTAATAAAGAGAATGTGC-TTATT-AT
61 GCTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAA--TGCATTTTTGGT
* *
14555 GCCTAATCAT-AAAATGAA-TGAAGATCATTACT-AGA
124 GCCTAATCTTGAAAA-GAATTG-AGATTATTA-TGAGA
** * * * * *
14590 ATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTT-TA-CAAAAATTGGTAGGAAG-AAAGC
1 ATTAATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTCTATCAAAAA-TGGTAGAAAGAAAAG-
* *
14652 CTTTT-TTGCAAAACAAAAGCATCAATATCATGTATCCTTATG-A--GAA-GACTATGTTTATGG
62 CTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATG-C-AT-TTT-TGG
* * * * * **
14712 TGCCAAATCCTGAAAATAATAGGGATT-TGTATGACT
123 TGCCTAATCTTGAAAAGAATTGAGATTAT-TATGAGA
* * * * *
14748 ATTAATGTTTTTCATATTTAAGAGACAAACTTTGATTCAATCAACAATGGTGGAAAGAAAAGCTT
1 ATTAATGTTTGTCTTATTTAAG-GACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* * * * * ** *
14813 TTCTTGAAACACTAAAGCATCAATGTAATGTATCCAAATGAAGGGAATGCATTTTTCTTTCCTAA
65 TTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTAA
*
14878 TCTTGAAAAGAATTGAGATTGTTATGAGA
130 TCTTGAAAAGAATTGAGATTATTATGAGA
* * * ** *
14907 ATTGAA-GATTGTCTTATTTCAAGGAGGAAA-TTTGATTTTAAAGAAAATATGG--CAAAGAAAA
1 ATT-AATGTTTGTCTTATTT-AAGGA-CAAACTTTGATTCT-ATCAAAA-ATGGTAGAAAGAAAA
* * * * * * * * * ** * *
14968 -ATTTTCATGCAGCAGAAAATCATTAATATCATTTATCCTACTG-AGCAGAATGTGTTTATAGTG
61 GCTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGCATTTTTGGTG
* ** * ** * *
15031 CCGAATC-ACAAATGAATAAAGATCATTACT-ATA
125 CCTAATCTTGAAAAGAATTGAGATTATTA-TGAGA
* ** * * * * * * * * *
15064 GTCCATGTTTGTATTTTTTGAGAAACTAACTTAGATTTTA-CAAAAAT-TTAATGGAAG-AAAGC
1 ATTAATGTTTGTCTTATTTAAG-GACAAACTTTGATTCTATCAAAAATGGT-A-GAAAGAAAAGC
* * * * * *
15126 CTTTCTTGCGAA-ACCAAAGCATTAACATCATGTGTCCT-A--AAGAGAA-GACTATGTTTATGG
63 TTTTCTTGC-AACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATG-C-AT-TTT-TGG
* * * **
15186 TGCCTAATTTTGAAAGGAA-TGAGTATTAGTATGACT
123 TGCCTAATCTTGAAAAGAATTGAG-ATTATTATGAGA
* * * * **
15222 ATTAATGTTTGCCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATATT
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* ** * * * ** * *
15287 TTCTTGC-ATAGTAAAGCATCAATGTCTTGTATACTAATGAAGGGAATGTGTTTTTGGTTCCCAA
65 TTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTAA
* * * **
15351 TCTTGAAAAGAATGGAGAGTGTTACAAGA
130 TCTTGAAAAGAATTGAGATTATTATGAGA
*** * * ** ** * *
15380 GCCAATGCTTGTCTTATTTAAGGAAAAAACTTTGGATTAAAGGAAAATAAGGCA-AAA-AAATAG
1 ATTAATGTTTGTCTTATTTAAGG-ACAAACTTT-GATTCTATCAAAA-ATGGTAGAAAGAAA-AG
** * * * * ** * * * ** * *
15443 -TTACCATGCAAAATAAAATCATGTGA-ATCGTTTATCCTAATG-AGGAGAACGTGTTTATAGTG
62 CTTTTCTTGCAACACAAAAGCAT-CAATATCATGTATCCTAATGAAGG-GAATGCATTTTTGGTG
** * *
15505 CCTAATC-ACAAAATGAA-TGAAGATCATT-TCTAGA
125 CCTAATCTTGAAAA-GAATTG-AGATTATTAT-GAGA
** ** ** *
15539 ATCCATGTTTGTCTTATTCGAGGA-ATGAACTTAAACTT-TA-CAAAAAT-GTATGGGAAG-AAA
1 ATTAATGTTTGTCTTATTTAAGGACA--AACTTTGA-TTCTATCAAAAATGGTA--GAAAGAAAA
* * * * *
15599 GCCTTTCTTGCAAAACCAAACCATCAATATCGTGTATCCTAATG-A--GAA-GCCTATGTTTATG
61 GCTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATG-C-AT-TTT-TG
* * * * **
15660 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATAACT
122 GTGCCTAATCTTGAAAAGAATTGAGATTATTATGAGA
* * * * * ** *
15697 ATTCATGTTTATCTTACTTAAACGACAAACTTTCATTCTATCAAAAACAGTGGAAAGAAAAGCTT
1 ATTAATGTTTGTCTTA-TTTAAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
* * * ** * *
15762 TTCTTGCAACAGC-AAAGCATCAATGTCATGTATCTTGATGAAGGGAATGTGTTTTTGGTTCCCA
65 TTCTTGCAACA-CAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTA
* * * ***
15826 ATCTTGAAAAGAATGGAGAGTGTTGCAAGA
129 ATCTTGAAAAGAATTGAGATTATTATGAGA
** * * *
15856 ATCGATGCTTGTCATATTTAAGGGA-AGAACTTTGATT-TA-AAGGAAAATAGG--GCAAAGAAA
1 ATTAATGTTTGTCTTATTTAA-GGACA-AACTTTGATTCTATCA--AAAAT-GGTAG-AAAGAAA
* * ** * * * * * ** * * * *
15916 TGGTTACCATGCAAAATAAAATCGTCTGTATCATTTATCCTAATG-AGGAGAATGTATTTATCGT
60 AGCTTTTCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGCATTTTTGGT
** *
15980 GCCTAATC-ACAAAATGAA-TGAAGATCATTACT-AGA
124 GCCTAATCTTGAAAA-GAATTG-AGATTATTA-TGAGA
** * * ** ** * * * *
16015 ATCCATGTTTCTCTGATTTGGGGATGAACTTAGACTT-TA-CAAAACTCAGTAGAAAG-AAAGCC
1 ATTAATGTTTGTCTTATTTAAGGACAAACTTTGA-TTCTATCAAAAAT-GGTAGAAAGAAAAGCT
* * * * *
16077 GTTCTTGCGAA-ACCAAAGCATCAATA--GTGTATGTCCTTATG-A--GAA-GACTATGTTTACG
64 TTTCTTGC-AACACAAAAGCATCAATATCATGTA--TCCTAATGAAGGGAATG-C-AT-TTT-TG
* * **
16135 GTGCCTAATCCTGAAAAGAATGGAGATT-TGTATGACT
122 GTGCCTAATCTTGAAAAGAATTGAGATTAT-TATGAGA
* * *
16172 ATTAATGTTTGTCATATTTAAGAGACAAACTTTGATT-TGATCAAAAATGGTGGAAGGAAAAGCT
1 ATTAATGTTTGTCTTATTTAAG-GACAAACTTTGATTCT-ATCAAAAATGGTAGAAAGAAAAGCT
* * * * * ** * *
16236 TTTCTTGCGACA-ACAAAGCATCAATGTCATGTATCCGAATGAATGTAATGTGTTTTTTGTTCCT
64 TTTCTTGCAACACA-AAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCT
* * *
16300 AATCTTGAAAAAAAACTGAGATTATTATGGGA
128 AATCTTG-AAAAGAATTGAGATTATTATGAGA
* * ** *
16332 ATTGAA-GATTGTCTTGTTTCAAGGATGAACTTTGATT-T-T-AAAGAAT-ATATGCAAAGAAAA
1 ATT-AATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAA-AATGGTA-G-AAAGAAAA
* * * ** * * ** *
16392 ACTATTCATGC--CGAGGAAAGTCATCAATATCATTTATCCTTATG-AGGAGAATGTGTTTATGG
61 GCTTTTCTTGCAAC-ACAAAAG-CATCAATATCATGTATCCTAATGAAGG-GAATGCATTTTTGG
** * * *
16454 TGCCTAATC-ACAAATGAA-TGAAGATCATGACT-AGA
123 TGCCTAATCTTGAAAAGAATTG-AGATTATTA-TGAGA
** * * * * * * * *
16489 ATCCATGTTTTTCTTGTTTGAGGAACGAACTTAGACTT-TA-CAAAAATTTGTGGGAA-AAAAG-
1 ATTAATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTCTATCAAAAA-TGGTAGAAAGAAAAGC
* * *
16550 TGTTTCTTGCGAA-ACCAAAGCATCAACATCATGTATCCT-A--AAGAGAA-GACTATGTTTATG
63 T-TTTCTTGC-AACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATG-C-AT-TTT-TG
* * **
16610 GTGCCTAATTTTGAAAAGAA-TGAGGATTAGTATGACT
122 GTGCCTAATCTTGAAAAGAATTGA-GATTATTATGAGA
* * * * * * * *
16647 ATTCATGTTTGTCTTATTTAAATGATAAACTTTGTTTCTATCAAAAACGATGGAAA-AAAATCTT
1 ATTAATGTTTGTCTTATTT-AAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTT
16711 TTCTTGC
65 TTCTTGC
16718 GATAGTAAAG
Statistics
Matches: 3585, Mismatches: 1124, Indels: 825
0.65 0.20 0.15
Matches are distributed among these distances:
148 2 0.00
149 2 0.00
150 8 0.00
151 88 0.02
152 5 0.00
153 20 0.01
154 39 0.01
155 136 0.04
156 222 0.06
157 532 0.15
158 1020 0.28
159 1283 0.36
160 167 0.05
161 34 0.01
162 22 0.01
163 5 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
ATTAATGTTTGTCTTATTTAAGGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTT
TCTTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAGGGAATGCATTTTTGGTGCCTAAT
CTTGAAAAGAATTGAGATTATTATGAGA
Found at i:15367 original size:949 final size:947
Alignment explanation
Indices: 11424--16743 Score: 6111
Period size: 949 Copynumber: 5.6 Consensus size: 947
11414 AAAATAGTGG
* * * * *
11424 GGATTAGTATAAGTATTAATGTTTGTCTTATTTAAAAGAAAAACTTTGATTTTATCAAAAACGGT
1 GGATTAGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGT
* * * * * * * **
11489 GAAAAGAAAAGCTTTTCATGTGATAGCTAAGCATTAATGTCATGTATCCTAATGAAGGGAATGCA
66 GGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * *
11554 TTTTTGGTTCCCAATGTTGAAAAGAATGGAGACTGTTACGATAATCAATG-TTAGTCTTATTTAA
131 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCAATGCTT-GTCTTATTTAA
* * * ** ** *
11618 GGTAAGAACTTTGATTTAATGAAAATAGGGCAAAGAAA-AGATTACTTTGTGAAAGAAAATCATC
195 GGAAAGAACTTTGATTAAAAGAAAATAGGGCAAAGAAATAG-TTACCATGCAAAATAAAATCATC
*
11682 -A-ATCATTTATCCAAAT-ATGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
259 TATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
11744 ATTAGTAGAATCCATGTTTATCTGATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCTA-GA
323 ATTACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TAGGA
* * ** * * * * *
11808 AAAAAGCCTTTTTTGTGAAACTAAAGCAACAGTATCATGTATACTTATGAGAAGACTGTGTTTAT
387 AGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
* * * * * *
11873 GGTGCCTAATCTTGAAAAGAATGGGGTTTTGTACGACTATTAAAGTTTCTCTTTTTTAAATGACA
452 GGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACA
* * * ** *
11938 AACTTTAATTCTATAAAAAACGGTGGAAAGAAAAGCTTGTCTTGTGACAACAAAACATCAATGTC
517 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAAC-ACAAAGCATCAATGTC
* * * * * * *
12003 ATGTATCCTAATGAAGAGAAT-CTATTTTTGGTTCCCTATCTTGAAAAGAATAGAGAGTATTGTA
581 ATGTATCCTAATGAAGGGAATGC-ATTTTT-TTTCCCAATCTTGAAAAGAATTGAGAGTGTTATG
* * * * * *
12067 AGAATCGATGCA-CGTCATATTT-AAGGAAAGAATTTTGA-TTTAAAGGAAAATAGGGCAAAGAA
644 AGAATTGAAG-ATTGTCTTATTTCAAGG-AAGAAATTTGATTTTAAA-GAAAATATGGCAAAGAA
** ** * ** * **
12129 ATGGTTACCATTCAAAATAAAATC-TTCTGTATCATTTATCCTAATGAAGAGAATGTGTTTATAG
706 A-AATTTTCATGCAGCAGAAAATCATT-AATATCATTTATCCTAATG-AGAGAATGTGTTTATAG
* * * * *
12193 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTATGTCTTCTTTGAGGAACGAG
768 TGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAA
* * *
12258 CTTAGACTTTACAAAAGTTTGTTGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATG
833 CTTAGACTTTACAAAAATTTATAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATG
* *
12323 TACCCTAATGAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAGAAT-A
898 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
* * * * * *
12372 GGGATTATTATGACTATTCATGTTTATCTT-TTT---TAACAAACTTTGATTCTATCAAAAATGA
1 -GGATTAGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGG
* * * *
12433 TGAAAAGAAAATCTTTTCTTGCAACAGCAATGCATAAATGTCATGTATCCTAATGAAGGGAATGT
65 TGGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * ** * *
12498 GTTTTTGGTTCCTAATCTTGAAAGGAATGCTGAGTGTTGCAAGAATCGATGCTTGTCTTATTTAA
130 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCAATGCTTGTCTTATTTAA
* * *
12563 GGAAAGAACTTTCATT------TAA-AGGGCAAAGAAATGGTTACCATGCAAAATAAAATCATCT
195 GGAAAGAACTTTGATTAAAAGAAAATAGGGCAAAGAAATAGTTACCATGCAAAATAAAATCATCT
*
12621 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCAT
260 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * * *
12686 TACTAGAATCTATGTTGGTTTGATTTGAGGCACAAACTTAGACTTTACAAAAATTGG-CGAGAAG
325 TACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAG-GAAG
* * *
12750 AAAGCTTTTCTTGCAAAACCAAAGCATTAATATCATGTATCCTTATGAGAAAACTATGTTTATGG
389 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGG
* * *
12815 TGCCTAATCCTAAAAAGAATGGGGATTTGTATGACTATTAATATTTGTCTTATTTAAGTGACAAA
454 TGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAA
* * * * *
12880 CTTTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAACGCCAT
519 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACA-CAAAGCATCAATGTCAT
* ** * *
12945 GTATCTTAATGAAGGGAATGTGTTTTTTGTTCCCAATCTTGAAAAGAATTGAAACTGTTATGAGA
583 GTATCCTAATGAAGGGAATGCATTTTTT-TTCCCAATCTTGAAAAGAATTGAGAGTGTTATGAGA
* ** ** * *
13010 ATTGAAGATTGTTTTATTTCCGGGATTAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAAATT
647 ATTGAAGATTGTCTTATTTCAAGGAAGAAATTTGATTTTAAAGAAAATATGGCAAAG-AAAAATT
* * * * * *
13075 TTCAAGTAGCAAAAAATCATCAATAGCATTTATCCTAATGAAGAGAATGTGTCTATAGTGCCTAA
711 TTCATGCAGCAGAAAATCATTAATATCATTTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAA
* * * * * *
13140 TTACAAAATGAAAAAAAAACATTGCTAGAATCCATG--TGTCTTATTTGAAGAACGAACTTAGAC
775 TCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGAC
* ** * *
13203 ATTACAAAAATTTATAGGAAGAAAGCCTTTCTTGCG-AACACAAAATATCAACATCATGCATCCT
840 TTTACAAAAATTTATAGGAAGAAAGCCTTTCTTGCGAAAC-CAAAGCATCAATATCATGTATCCT
*
13267 AAAGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
904 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
* * * *
13311 GGATTTGTATGACTATTCATTTTTGTCTTATTTAAATGAAAAACTTTGATTCTATCAAAAACGGT
1 GGATTAGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGT
* * * * *
13376 GGAAATAAAATCTTTTCTTGTGACAACATAGCATCAATGTCATGTATCCTAATGAAGGTAATGTG
66 GGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * *
13441 TTTTTGG-TCCTAATCATGAAAAGAATGGAGAGTGTTACAAGAATCGATGCTTGTCTTATTTAAG
131 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCAATGCTTGTCTTATTTAAG
* * *
13505 GAAAGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAATGGTTACCATGCAAAATAAAATCATCT
196 GAAAGAACTTTGA-TTAAAAGAAAATAGGGCAAAGAAATAGTTACCATGCAAAATAAAATCATCT
* * * * *
13570 ATATCATTTATCGTAATGAGGAGGATGTGTTTATAGTGCATAATCACAACATGAAAGAAGATCAT
260 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * * * *
13635 TGCTAGGATCTATGTTTGTCTGATTTGAGACACGAACTTATACTTTACAAAAATTGGCCA-GAAG
325 TACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TAGGAAG
* *
13699 AAAGCCTTTCTTGC-GAATCAAAGCATCAATATCGA-GTATCCTTATGAGAAGACTATGTTTATG
389 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATC-ATGTATCCTTATGAGAAGACTATGTTTATG
* ** *
13762 GTGCCTAATCCTAAAAAGAAAAGGGATTTGTTTGACTATTAATGTTTGTCTTATTTAAGA-GACA
453 GTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA-ATGACA
* * * * *
13826 AACTTTGATTCGATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTA
517 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACA-CAAAGCATCAATGTC
* *
13891 ATGTATCCAAATGAAGGGAATGCATTTTTTGTTCCCAATCTTGAAAAGAATTGAGATTGTTATGA
581 ATGTATCCTAATGAAGGGAATGCATTTTTT-TTCCCAATCTTGAAAAGAATTGAGAGTGTTATGA
* * * * *
13956 GAATTAAAGATTGTCTTTTTTCAAGGATG-AACTTGATTTTAAGGAAAATATGGCAAAGAAAAAT
645 GAATTGAAGATTGTCTTATTTCAAGGAAGAAATTTGATTTTAAAGAAAATATGGCAAAGAAAAAT
* * *
14020 TTTCATGTAGCAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCGA
710 TTTCATGCAGCAGAAAATCATTAATATCATTTATCCTAATGA-GAGAATGTGTTTATAGTGCCTA
* * * * *
14085 ATCA-TAAATGAATAAAGATCATTACT-GTAGTCCATGCTTGTATTATTTGAGGAACCAACTTAG
774 ATCACAAAATGAATAAAGATCATTACTAG-AATCCATGTTTGTCTTATTTGAGGAACGAACTTAG
* * * *
14148 ATTTTACAAAAATTTATGGGAAGAAGGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCC
838 ACTTTACAAAAATTTATAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* *
14213 TAATGAGAGGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG
903 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
* * * * *
14258 GGATTAATATGACTATTCATGTTTGTCTTATTTAAATGACAAACTTTAATTCTATAAAAAATGGT
1 GGATTAGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGT
* * * * * *
14323 GGAAAGAAAAGCATTTCTTTCGACAGTAAAGCATCAATGTGATGTATCCTAATGAAGGAAATGTG
66 GGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * *
14388 TTTTTGGTTCTCAATCTTGAAAATAATGGAGAGTGTTACAAGAATCTATGCTTGTCTTATTTAAG
131 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCAATGCTTGTCTTATTTAAG
*
14453 GAAAGAACTTTGATTCAAAAGAAAATAGGGCAAAGAAATGGTTTA-CATGCAAAATAAAATCATC
196 GAAAGAACTTTGATT-AAAAGAAAATAGGGCAAAGAAATAG-TTACCATGCAAAATAAAATCATC
** * * * *
14517 CGTATCATTTATCCTAATAAAGAGAATGTGCTTATTA-TGCCTAATCATAAAATGAATGAAGATC
259 TATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATC
14581 ATTACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAA
323 ATTACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAA
* *
14646 GAAAGCCTTTTTTGCAAAACAAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
388 GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
* * * * *
14711 GTGCCAAATCCTGAAAATAATAGGGATTTGTATGACTATTAATGTTTTTCATATTTAAGA-GACA
453 GTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA-ATGACA
* * * * *
14775 AACTTTGATTCAATCAACAATGGTGGAAAGAAAAGCTTTTCTTGAAACACTAAAGCATCAATGTA
517 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACAC-AAAGCATCAATGTC
* * *
14840 ATGTATCCAAATGAAGGGAATGCATTTTTCTTTCCTAATCTTGAAAAGAATTGAGATTGTTATGA
581 ATGTATCCTAATGAAGGGAATGCATTTTT-TTTCCCAATCTTGAAAAGAATTGAGAGTGTTATGA
*
14905 GAATTGAAGATTGTCTTATTTCAAGGAGGAAATTTGATTTTAAAGAAAATATGGCAAAGAAAAAT
645 GAATTGAAGATTGTCTTATTTCAAGGAAGAAATTTGATTTTAAAGAAAATATGGCAAAGAAAAAT
* *
14970 TTTCATGCAGCAGAAAATCATTAATATCATTTATCCTACTGAGCAGAATGTGTTTATAGTGCCGA
710 TTTCATGCAGCAGAAAATCATTAATATCATTTATCCTAATGAG-AGAATGTGTTTATAGTGCCTA
* * * * * *
15035 ATCAC-AAATGAATAAAGATCATTACTATAGTCCATGTTTGTATTTTTTGAGAAACTAACTTAGA
774 ATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGA
* * * *
15099 TTTTACAAAAATTTA-ATGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAACATCATGTGTCC
839 CTTTACAAAAATTTATA-GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * *
15163 TAAAGAGAAGACTATGTTTATGGTGCCTAATTTTGAAAGGAATGA
903 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
* *
15208 GTATTAGTATGACTATTAATGTTTGCCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGT
1 GGATTAGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGT
* * * * *
15273 GGAAAGAAAATATTTTCTTGC-ATAGTAAAGCATCAATGTCTTGTATACTAATGAAGGGAATGTG
66 GGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
**
15337 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAGCCAATGCTTGTCTTATTTAAG
131 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCAATGCTTGTCTTATTTAAG
* * * * *
15402 GAAAAAACTTTGGATTAAAGGAAAATAAGGCAAAAAAATAGTTACCATGCAAAATAAAATCATGT
196 GAAAGAACTTT-GATTAAAAGAAAATAGGGCAAAGAAATAGTTACCATGCAAAATAAAATCATCT
* *
15467 GA-ATCGTTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
260 -ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
15531 TTTCTAGAATCCATGTTTGTCTTATTCGAGGAATGAACTTAAACTTTACAAAAA-T-GTATGGGA
324 TTACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTA--GGA
* * * *
15594 AGAAAGCCTTTCTTGCAAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGCCTATGTTTAT
387 AGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
* * * * * * *
15659 GGTGCCTAATCTTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTATCTTACTTAAACGACA
452 GGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACA
* *
15724 AACTTTCATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACAGCAAAGCATCAATGTC
517 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACA-CAAAGCATCAATGTC
* * ** * * ***
15789 ATGTATCTTGATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTGCAA
581 ATGTATCCTAATGAAGGGAATGCATTTTT-TTTCCCAATCTTGAAAAGAATTGAGAGTGTTATGA
* * * * * *
15854 GAATCGATGCTTGTCATATTT-AAGGGAAGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAT
645 GAATTGAAGATTGTCTTATTTCAA-GGAAGAAATTTGATTTTAAA-GAAAATATGGCAAAGAAA-
** ** ** * * * * *
15917 GGTTACCATGCAAAATAAAATCGTCT-GTATCATTTATCCTAATGAGGAGAATGTATTTATCGTG
707 AATTTTCATGCAGCAGAAAATCAT-TAATATCATTTATCCTAATGA-GAGAATGTGTTTATAGTG
* * * * *
15981 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTGATTTG-GGGATGAACT
770 CCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACT
* * * * *
16045 TAGACTTTAC-AAAACTCAGTAGAAAGAAAGCCGTTCTTGCGAAACCAAAGCATCAATA--GTGT
835 TAGACTTTACAAAAATTTA-TAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
16107 ATGTCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATG-
899 A--TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
* * *
16157 GAGATTTGTATGACTATTAATGTTTGTCATATTTAAGA-GACAAACTTTGATT-TGATCAAAAAT
1 G-GATTAGTATGACTATTAATGTTTGTCTTATTTAA-ATGACAAACTTTGATTCT-ATCAAAAAC
* * * * * *
16220 GGTGGAAGGAAAAGCTTTTCTTGCGACAACAAAGCATCAATGTCATGTATCCGAATGAATGTAAT
63 GGTGGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * * *** * * *
16285 GTGTTTTTTGTTCCTAATCTTGAAAAAAAACT-GAGATTATTATGGGAATTGAA-GATTGTCTTG
128 GTGTTTTTGGTTCCCAATCTTG-AAAAGAA-TGGAGAGTGTTACAAGAA-TCAATGCTTGTCTTA
* * * * ** * ** **
16348 TTTCAAGG-ATGAACTTTGATTTTAAAGAATATA-TGCAAAGAAA-AACTATTCATGCCGAGGAA
190 TTT-AAGGAAAGAACTTTGA-TTAAAAGAAAATAGGGCAAAGAAATAGTTA-CCATGCAAAATAA
* * * *
16410 AGTCATCAATATCATTTATCCTTATGAGGAGAATGTGTTTATGGTGCCTAATCAC-AAATGAATG
252 AATCATCTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
16474 AAGATCATGACTAGAATCCATGTTTTTCTTG-TTTGAGGAACGAACTTAGACTTTACAAAAATTT
317 AAGATCATTACTAGAATCCATGTTTGTC-TGATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * * *
16538 GTGGGAAAAAAGTGTTTCTTGCGAAACCAAAGCATCAACATCATGTATCCTAAAGAGAAGACTAT
381 GTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAT
** * * *
16603 GTTTATGGTGCCTAATTTTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
446 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA
* * * * * * * *
16668 ATGATAAACTTTGTTTCTATCAAAAACGATGGAAA-AAAATCTTTTCTTGCGATAGTAAAGCACC
511 ATGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACA-CAAAGCATC
16732 AATGTCATGTAT
575 AATGTCATGTAT
16744 ACTTACAAAA
Statistics
Matches: 3761, Mismatches: 526, Indels: 168
0.84 0.12 0.04
Matches are distributed among these distances:
937 3 0.00
938 170 0.05
939 10 0.00
940 442 0.12
941 76 0.02
942 90 0.02
944 1 0.00
945 168 0.04
946 67 0.02
947 269 0.07
948 498 0.13
949 1002 0.27
950 753 0.20
951 159 0.04
952 46 0.01
953 7 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (947 bp):
GGATTAGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACTTTGATTCTATCAAAAACGGT
GGAAAGAAAATCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
TTTTTGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACAAGAATCAATGCTTGTCTTATTTAAG
GAAAGAACTTTGATTAAAAGAAAATAGGGCAAAGAAATAGTTACCATGCAAAATAAAATCATCTA
TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
ACTAGAATCCATGTTTGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAGAA
AGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTG
CCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAATGACAAACT
TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACAAAGCATCAATGTCATGTA
TCCTAATGAAGGGAATGCATTTTTTTTCCCAATCTTGAAAAGAATTGAGAGTGTTATGAGAATTG
AAGATTGTCTTATTTCAAGGAAGAAATTTGATTTTAAAGAAAATATGGCAAAGAAAAATTTTCAT
GCAGCAGAAAATCATTAATATCATTTATCCTAATGAGAGAATGTGTTTATAGTGCCTAATCACAA
AATGAATAAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACA
AAAATTTATAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA
AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGA
Found at i:17765 original size:475 final size:477
Alignment explanation
Indices: 16756--18836 Score: 2804
Period size: 476 Copynumber: 4.4 Consensus size: 477
16746 TTACAAAATA
** * *
16756 AAAATCATCTGTATCATTTATCTTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
1 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* *
16821 TGAAGATCATTTCTAGAATCCATATTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAAAA
66 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTAC--AAAAA
*
16886 TTTCG-G--AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAACGAGAAGA
129 TTT-GTGAAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGA
* * * * *
16948 CTAAGTTTACGGTGGCTAATCTTGAAAATAATTAGGGATTAGCATGACTATTCATGTTTGTCTTA
193 CTATGTTTATGGTGCCTAATCTTGAAAAGAATTAGGGATTAGTATGACTATTCATGTTTGTCTTA
*
17013 TTTAAATGACAAACTCTGATTCGATCAAAAATGGTGGAAAGAAAAGCTATTCTTGCGACACCAAA
258 TTTAAATGACAAACTCTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
17078 GCATCAAAGTCATATATCCTAATGAAGGGAATGAGTTTTCCGTTCCTAATCCTGAAAAGAATTGA
323 GCATCAATGTCATGTATCCTAATGAAGGGAATGAGTTTTTCGTTCCCAATCCTGAAAAGAATTGA
* *
17143 GACTGTTATGAGAATTGAAGATTATCTTATTTTAGGGATGAACTTTGATTTTAAAGAAAATATGG
388 GACTGTTACGAGAATTGAAGATTGTCTTATTTTAGGGATGAACTTTGATTTTAAAGAAAATATGG
*
17208 CGAAGAAAAACTTTTCATGCCGAAG
453 CAAAGAAAAACTTTTCATGCCGAAG
* * ** *
17233 AAAATCATCATTATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCAAAATCACAGAATGAA
1 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
17298 TGAAGATCATTACTAGAATCCATGTTTGTCTGATTTGAGGCACGAGCTTGGACTTTACAAAAA-T
66 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATT
* * * ** * * *
17362 CGAAGAAAAGAAAACCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTTAGGCGAAGACT
131 TG-TGAAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
* * *
17427 ATGTTTATGGTGCCTAATCCTGAAAAGAA-TAGGGATTTGTATGACTATTAATGTTTGTCTTATT
195 ATGTTTATGGTGCCTAATCTTGAAAAGAATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * *
17491 TAAGA-GATAAACTTTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTTTTACGACACCAAAG
260 TAA-ATGACAAACTCTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* ** * * * *
17555 CATCAATGTCATGTATCCGAACAAATGTAATGTG-TTTTCGTTCCCAATCCTAAAAAGAATTGAG
324 CATCAATGTCATGTATCCTAATGAAGGGAATGAGTTTTTCGTTCCCAATCCTGAAAAGAATTGAG
* * *
17619 ACTGTTATGAGAATTGAAGATTGTCTTGTTTTAGGGATGAACTTTGATTTTAAAGGAAATATGGC
389 ACTGTTACGAGAATTGAAGATTGTCTTATTTTAGGGATGAACTTTGATTTTAAAGAAAATATGGC
*
17684 AAAGAAAAACTCTTCATGCCGAAG
454 AAAGAAAAACTTTTCATGCCGAAG
*
17708 AAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCAC-AAAT-AA
1 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
17771 TTAAAGATCATGACTAGAATCCATGTTTTTCTTATTTGAGGAACGAACTTATACTTTGCAAAAAT
66 -TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAAT
** * *
17836 TTGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAATACT
130 TTGTGAAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
* * * *
17901 ATGTTGATGGTGCCTAATCATGAAAAGAATTGGGGATTAGTACGACTATTCATGTTTGTCTTATT
195 ATGTTTATGGTGCCTAATCTTGAAAAGAATTAGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
17966 TAAATGACAAACTCTAATTCGATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGC
260 TAAATGACAAACTCTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* *
18031 ATCAATGTCATGTAT-CTAATGAAGGGAATGAGTTTTTTGTTCCCAATCCTGAAAAGAATTAAGA
325 ATCAATGTCATGTATCCTAATGAAGGGAATGAGTTTTTCGTTCCCAATCCTGAAAAGAATTGAGA
* * *
18095 CTGTTACGAGAATTGATGATTGTCTTATTTTAGGGATTAACTTTGATTTTAAAGAAAATATGGGA
390 CTGTTACGAGAATTGAAGATTGTCTTATTTTAGGGATGAACTTTGATTTTAAAGAAAATATGGCA
18160 AAGAAAAACTTTTCATGTCC-AAG
455 AAGAAAAACTTTTCATG-CCGAAG
*
18183 AAAATCATCAATATCATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
1 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
18248 TGAAGATCATGACTAGAATCCATGTTTTTCTTATTTGAGGAACAAACTTAGACTTGACAAAAATT
66 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATT
** * *
18313 TGTGGGAAGAAAGTCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGCTA
131 TGTGAAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
* *
18378 TGATTATGGTGCCTTATCTTGAAAAGAATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTT
196 TGTTTATGGTGCCTAATCTTGAAAAGAATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * **
18443 AAATGACAAACT-TGATTCTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGCAACAATAAAGCA
261 AAATGACAAACTCTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * * *
18507 TCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGAG
326 TCAATGTCATGTATCCTAATGAAGGGAATGAGTTTTTCGTTCCCAATCCTGAAAAGAATTGAGAC
* * * *** * * * *
18572 TGTTGCAAGAATCGATCCTTGTCTTATTTAAGGAAAGAACTTTGA-TTTAAAGGAAAATAAGGCA
391 TGTTACGAGAATTGAAGATTGTCTTATTTTAGGGATGAACTTTGATTTTAAA-GAAAATATGGCA
*** ** ** *
18636 AAGAAATGGTTACCATGCAAAAT
455 AAGAAAAACTTTTCATGCCGAAG
** * * *
18659 AAAATCATCTGTATCATTTATCTTAATGAGGAGAATGTCTTTATAGTGCCTAATCATAAAATGAA
1 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * ** * *
18724 TAAAGATCATTTCTAGAATCCACATTTGTCTTATTTGAGGAACGAACTTAGATTTTGCAAAAATT
66 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATT
* *
18789 TGTGAGAAA-AAAGCCTTTCATGCGAATCCAAAGCATCAATATCATGTA
131 TGTGA-AAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA
18837 CCAGAGGGGG
Statistics
Matches: 1412, Mismatches: 175, Indels: 35
0.87 0.11 0.02
Matches are distributed among these distances:
473 3 0.00
474 148 0.10
475 499 0.35
476 570 0.40
477 192 0.14
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (477 bp):
AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATT
TGTGAAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
TGTTTATGGTGCCTAATCTTGAAAAGAATTAGGGATTAGTATGACTATTCATGTTTGTCTTATTT
AAATGACAAACTCTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
TCAATGTCATGTATCCTAATGAAGGGAATGAGTTTTTCGTTCCCAATCCTGAAAAGAATTGAGAC
TGTTACGAGAATTGAAGATTGTCTTATTTTAGGGATGAACTTTGATTTTAAAGAAAATATGGCAA
AGAAAAACTTTTCATGCCGAAG
Found at i:18172 original size:158 final size:157
Alignment explanation
Indices: 17048--18641 Score: 610
Period size: 159 Copynumber: 10.1 Consensus size: 157
17038 CAAAAATGGT
* * *
17048 GGAAAGAAAAGCTATTCTTGCGACACCAAAGCATCAA-AGTCATATATCCTAATGAAGGGAATGA
1 GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATA-TCATGTATCCTAATG-AGGGAATGA
** * * * * * * *
17112 GTTTTCCGTTCCTAATCCTGAAAAGAATTGAGACTGTTATGAGAATTGAAGATTATCTTATTTTA
64 GTTTTTAGTGCCTAATCCTGAAAAGAATTAAGACTGTTACGAGAATTCATGTTTGTCTTATTTTA
17177 GGGATGAACTTTGATTTTAAAGAAAATATG
129 GGGATGAACTTTGATTTTAAA-AAAATATG
* ** * * * *
17207 GCG-AAGAAAAACTTTTCATGCCGA-AGAAAATCATCATTATCATTTATCCTAATGAGAAGAATG
1 G-GAAAGAAAAACTTTTCTTG-CGACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATG
* * ** * * * * * * *
17270 TGTTTATAGTGCAAAATCACAG-AATGAATGAAGA-TCATTACTAGAATCCATGTTTGTCTGATT
63 AGTTTTTAGTGCCTAATC-CTGAAAAGAATTAAGACT-GTTACGAGAATTCATGTTTGTCTTATT
* * * * * * * *
17333 TGAGGCACGAGCTTGGACTTTACAAAAAT-CG
126 TTAGGGATGAACTTTGATTTTAAAAAAATATG
* * * **
17364 AAGAAA-AGAAAACCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCT--T-AGGCGAA-G
1 -GGAAAGA-AAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATG
* * * * ** *
17424 ACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TAGGGA-TTTGTATGACTATTAATGTTTGTCT
63 AGT-T-TTTA--GTGCCTAATCCTGAAAAGAATTA-AGACTGT-TACGAGAATTCATGTTTGTCT
* * * ** * *
17487 TATTTAAGAGATAAACTTTGATTCGATCAAAAAT-GG
122 TATTTTAGGGATGAACTTTGATTTTA-AAAAAATATG
* * * * * ** * * *
17523 TGGAAAGAAAAGCTTTTTTTACGACACCAAAGCATCAATGTCATGTATCCGAACAAATGTAATGT
1 -GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAA-TGAGGGAATGA
* * * * * * * * * *
17588 G-TTTTCGTTCCCAATCCTAAAAAGAATTGAGACTGTTATGAGAATTGAAGATTGTCTTGTTTTA
64 GTTTTTAGTGCCTAATCCTGAAAAGAATTAAGACTGTTACGAGAATTCATGTTTGTCTTATTTTA
*
17652 GGGATGAACTTTGATTTTAAAGGAAATATG
129 GGGATGAACTTTGATTTTAAA-AAAATATG
* * * ** * *
17682 GCAAAGAAAAACTCTTCATGCCGA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-A
1 GGAAAGAAAAACTTTTCTTG-CGACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGA
* * * * *
17745 TGTTTATAGTGCCTAAT-C--ACAAATAATTAAAGATCATG--ACTAGAATCCATGTTTTTCTTA
64 -GTTTTTAGTGCCTAATCCTGA-AAAGAATT-AAGA-C-TGTTACGAGAATTCATGTTTGTCTTA
* * * * ** *
17805 TTTGAGGAACGAACTTAT-ACTTTGCAAAAATTTG
124 TTTTAGGGATGAACTT-TGATTTTAAAAAAATATG
* * * * *
17839 TGGGAAG-AAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA--GAAT-AC
1 -GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGAG
* * ** * **
17900 TATGTTGATGGTGCCTAATCATGAAAAGAATTGGGGATTAG-TACGACTATTCATGTTTGTCTTA
65 T-T-TT--TAGTGCCTAATCCTGAAAAGAATT-AAGACT-GTTACGAGAATTCATGTTTGTCTTA
* ** ** * * ** **
17964 TTTAAATGACAAACTCTAATTCGATCAAAA-ATG
124 TTTTAGGGATGAACTTTGATTTTAAAAAAATATG
* *
17997 GTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT-CTAATGAAGGGAATG
1 G-G-AAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATG
* * * * *
18061 AGTTTTTTGTTCCCAATCCTGAAAAGAATTAAGACTGTTACGAGAATTGATGATTGTCTTATTTT
63 AGTTTTTAGTGCCTAATCCTGAAAAGAATTAAGACTGTTACGAGAATTCATGTTTGTCTTATTTT
*
18126 AGGGATTAACTTTGATTTTAAAGAAAATATG
128 AGGGATGAACTTTGATTTTAAA-AAAATATG
* * ** * * * *
18157 GGAAAGAAAAACTTTTCATGTCCA-AGAAAATCATCAATATCATTTATCCTACTGAGGAGAATGT
1 GGAAAGAAAAACTTTTCTTG-CGACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGA
* * * * *
18221 GTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATG--ACTAGAATCCATGTTTTTCTTAT
64 GTTTTTAGTGCCTAATC-CTGAAAA-GAATTAAGA-C-TGTTACGAGAATTCATGTTTGTCTTAT
* * ** * * * * *
18282 TTGAGGAACAAACTTAGACTTGACAAAAATTTG
125 TTTAGGGATGAACTTTGATTTTAAAAAAATATG
* ** * *
18315 TGGGAAGAAAGTC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGGCTAT
1 -GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAG--GG-AAT
* * * * * * * **
18379 GA--TTATGGTGCCTTATCTTGAAAAGAATTAGGGATTAG-TATGACTATTCATGTTTGTCTTAT
62 GAGTTTTTAGTGCCTAATCCTGAAAAGAATTA-AGACT-GTTACGAGAATTCATGTTTGTCTTAT
* ** ** * * **
18441 TTAAATGACAAAC-TTGATTCTATCAAAAA-CGG
125 TTTAGGGATGAACTTTGATTTTA-AAAAAATATG
* * ** *
18473 TGGAAAGAAAATCTTTTCTTGCAACAATAAAGCATCAATATCATGTATCCTAATGAAGGGAATGT
1 -GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGA
* * * * * ** * * * ** *
18538 GTTTTTGGTTCCCAATCTTGAAAGGAATGGAGAGTGTTGCAAGAA-TCGATCCTTGTCTTATTTA
64 GTTTTTAGTGCCTAATCCTGAAAAGAATTAAGACTGTTACGAGAATTC-ATGTTTGTCTTATTTT
* * *
18602 AGGAAAGAACTTTGA-TTTAAAGGAAAATAAG
128 AGGGATGAACTTTGATTTTAAA--AAAATATG
*
18633 GCAAAGAAA
1 GGAAAGAAA
18642 TGGTTACCAT
Statistics
Matches: 1034, Mismatches: 313, Indels: 176
0.68 0.21 0.12
Matches are distributed among these distances:
153 1 0.00
154 8 0.01
155 7 0.01
156 8 0.01
157 85 0.08
158 414 0.40
159 429 0.41
160 65 0.06
161 5 0.00
162 7 0.01
163 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGAGT
TTTTAGTGCCTAATCCTGAAAAGAATTAAGACTGTTACGAGAATTCATGTTTGTCTTATTTTAGG
GATGAACTTTGATTTTAAAAAAATATG
Found at i:20961 original size:159 final size:158
Alignment explanation
Indices: 20268--21417 Score: 446
Period size: 159 Copynumber: 7.3 Consensus size: 158
20258 TACCGAGAAG
* * * * * * * *
20268 AAAGCCTTTCTTGCAAAACTAAAGCATCAATATCGTGCATCCTTATGAGAA-GACTATGTTTATG
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGA-AAGGAATATGTTTATG
**
20332 GTGCCTAATCCCGAAAAGAATGGGGATTTGTATGACTAAT-AATGTTTGTCTTATTTAAGAGATA
65 GTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACT-ATCAATGTTTGTCTTATTTAAGAGATA
* *
20396 AACTTTGATTCGATCAAAAACGATGGAAAGA
129 AACTTTAATTTGAT-AAAAACGATGGAAAGA
* *** * * * * * *
20427 AAAGGTTTTCTTACGGCACCAAAGCATCAATGTCTTGTAACCTAATGAAGGGATTGTGTTTTTGG
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTATGG
* * ** * * * ** * ** * * *
20492 TTCCCAATCTTTTAAATAATGGTGA-CTGTTATGAGAATCGATACTTATCTTATTTACGAAATAA
66 TGCCTAATCTTGAAAAGAATGGGGATTTG-TATGACTATCAATGTTTGTCTTATTTAAGAGATAA
* * ** *
20556 ACTTTGATTTTA-AATAAAATAGGGCAAAGA
130 ACTTTAATTTGATAA-AAACGATGG-AAAGA
* * ** * * * *** * *
20586 AAAGATTTTCATACAAAAGAAAATCATCAATATCGTGTATCCTAA-GGGGGAGAATGTGTTTATA
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATATGTTTATG
** ** * * * *
20650 GTGCCTAATC-ACAAAATGAATGAAGATCAT-TACTAGA--ATCCATGTTTGTCTTAGTTGAG-G
65 GTGCCTAATCTTGAAAA-GAATGGGGAT-TTGTA-T-GACTATCAATGTTTGTCTTATTTAAGAG
* * * * *
20710 CACAAAC-TTAGACTTT-ACAAAAATTGGTGGTAA-A
126 -ATAAACTTTA-A-TTTGATAAAAA-CGATGGAAAGA
* * ** * * * * *
20744 AATGCCTTTCTTATGAAACCAAACCATCATTGTCATGTATCTTAAAGAGAA-GACTATGTTTATG
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGA-AAGGAATATGTTTATG
* * *
20808 GTGCCTAATCTTGAAAAGAAAGGGGATTTGTATGACTATTAATGTTTTTCTTATTTAAGAGATAA
65 GTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATCAATGTTTGTCTTATTTAAGAGATAA
*
20873 ACTTTAATTTGATAGAAAACGACGGAAAGA
130 ACTTTAATTTGATA-AAAACGATGGAAAGA
* *
20903 AAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGG
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTATGG
* * ** * * ** * ** * *** * *
20968 TTCCCAATCTTTTAAAGAATGGTGACTACTACGAGAATCGATGCAAGCCTT-TTTGAAG-G-T-G
66 TGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATCAATGTTTGTCTTATTT-AAGAGATAA
* *
21029 ATTTTAA-TT-A-AAATA-G--GGCAAAGA
130 ACTTTAATTTGATAAAAACGATGG-AAAGA
* * * * ** * * * * * * *
21053 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATATATCCTACTG-AGGAGAATGTGTTTATA
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATATGTTTATG
** **** * * *
21117 GTGCCTAATC-ACAAAATGAAAAAAGA--T-CATGACTAGAATCAATGTTTGTCTCATTTGAG-G
65 GTGCCTAATCTTGAAAA-GAATGGGGATTTGTATGACT---ATCAATGTTTGTCTTATTTAAGAG
* * **
21177 CATGAAC-TTAGAGTTT-A-CAAAA-G-TTAAAAGGA
126 -ATAAACTTTA-A-TTTGATAAAAACGATGGAAA-GA
** * * * * *
21209 AAAAATGTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAAT-AATAAGATTATGTTTAT
1 AAAGCT-TTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAA-AGGAATATGTTTAT
* * * *
21273 GGTGCCTAATCCTGAAAAGAATGGGGATTTGTATTACTATTAATGTTTGTCTTATTTAAGAGACA
64 GGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATCAATGTTTGTCTTATTTAAGAGATA
* * * *
21338 AACTTTGATTCGATCAAAAATGGTGGAAAGA
129 AACTTTAATTTGAT-AAAAACGATGGAAAGA
* * * * *
21369 AAAGCTTTTCTTGCAATACCAAAGCATCAGTGTCAAGTATTCTAATGAA
1 AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAA
21418 GAGAAGGTGT
Statistics
Matches: 703, Mismatches: 229, Indels: 117
0.67 0.22 0.11
Matches are distributed among these distances:
147 3 0.00
149 7 0.01
150 76 0.11
151 4 0.01
152 7 0.01
153 3 0.00
154 1 0.00
155 12 0.02
156 17 0.02
157 91 0.13
158 124 0.18
159 329 0.47
160 22 0.03
161 7 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
AAAGCTTTTCTTACAAAACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATATGTTTATGG
TGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATCAATGTTTGTCTTATTTAAGAGATAAA
CTTTAATTTGATAAAAACGATGGAAAGA
Found at i:22279 original size:474 final size:472
Alignment explanation
Indices: 20062--23190 Score: 3430
Period size: 474 Copynumber: 6.6 Consensus size: 472
20052 TCAATGCTCA
* * * ** *
20062 TCTTATTTAAGGAAAGAACTTTG-TTTTAAAGGAAAATGGGGCAAAGAAAAGGCTACCATGCAAA
1 TCTTATTTAAGGATA-AACTTTGATTTT-AAGTAAAATAGGGCAAAGAAAAGATTTCCATGC-AA
* * * * * *
20126 ATAAAATCATTTAGTATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAAT
63 AGAAAATCA-TCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
20191 GAATGAAGATCCTTACTAGAATCCATGTTTGTTTGATTTGAGGCACGAACTTAGATTTTACAAAA
127 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
*** * * * *
20256 ATTACCGAGAAGAAA-GCCTTTCTTGCAAAACTAAAGCATCAATATCGTGCATCCTTATGAGAAG
192 ATTGGTG-GAA-AAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAG
** *
20320 ACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGATTTGTATGACTAATAATGTTTGTCTTA
255 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTA
* * * *
20385 TTTAAGAGATAAACTTTGATTCGATCAAAAACGATGGAAAGAAAAGGTTTTCTTACGGCACCAAA
320 TTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAA
* * * * *
20450 GCATCAATGTCTTGTAACCTAATGAAGGGATTGTGTTTTTGGTTCCCAATCTTTTAAATAATGGT
385 GCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATC-TTTAAAGAATGGT
* * *
20515 GACTGTTATGAGAATCGATACTTA
449 GACTATTATGAGAATCGATGCTTG
* * * * *
20539 TCTTATTTACGAAATAAACTTTGATTTTAAATAAAATAGGGCAAAGAAAAGATTTTCATACAAAA
1 TCTTATTTAAG-GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC-AAA
* * *
20604 GAAAATCATCAATATCGTGTATCCTAAGGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
20669 ATGAAGATCATTACTAGAATCCATGTTTGTCTTAGTTGAGGCACAAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * * * * *
20734 TGGTGGTAAAAATGCCTTTCTTATGAAACCAAACCATCATTGTCATGTATCTTAAAGAGAAGACT
194 TGGTGG-AAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACT
* *
20799 ATGTTTATGGTGCCTAATCTTGAAAAGAAAGGGGATTTGTATGACTATTAATGTTTTTCTTATTT
258 ATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTT
* * * ** *
20864 AAGAGATAAACTTTAATTTGAT-AGAAAACGACGGAAAGAAAAGCTTTTCTTACAACACCAAAGC
323 AAGAGACAAACTTTGATTCGATCA-AAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGC
*
20928 ATCAATGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGA
387 ATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATC-TTTAAAGAATGGTGA
* * **
20993 CTACTACGAGAATCGATGCAAG
451 CTATTATGAGAATCGATGCTTG
* *
21015 CCTT-TTTGAAGG--------TGATTTTAATTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
1 TCTTATTT-AAGGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC-AAA
* **
21071 GAAAATCATCAATATCATATATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
** * * * * *
21136 AAAAAGATCATGACTAGAATCAATGTTTGTCTCATTTGAGGCATGAACTTAGAGTTTACAAAAGT
129 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** *
21201 TAAAAGGAAAAAATG--TTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCCTAATA-ATAAG
194 T-GGTGG-AAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAA-AGAGAAG
* * *
21262 ATTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATTACTATTAATGTTTGTCTTA
255 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTA
* * * *
21327 TTTAAGAGACAAACTTTGATTCGATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAATACCAAA
320 TTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAA
* * * * **
21392 GCATCAGTGTCAAGTATTCTAATGAAGAGAAGGTGTTTTTGGTTCCCAATCTTTTAAAG-A----
385 GCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATC-TTTAAAGAATGGT
* * *
21452 -ACTATTATGAGAATCTATTCTTA
449 GACTATTATGAGAATCGATGCTTG
* * * *
21475 TCTTATTTAAGAGATTAACTTTGATTTTAAGAAAAATAGGGCAAGGAAAAGATTTCCATGGAGAA
1 TCTTATTTAAG-GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCA-AA
* * * *
21540 GATAATCATCAATATCATTTATCCTAA-GACGGAGAATATGTTTATAGAGCCTAATCACATAATG
64 GAAAATCATCAATATCATTTATCCTAAGGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
21604 AATGAAGATCATTATTGGAATCCATGTTTGTCTCATTTGAGGCACGGAAC-TAGACTTTATAGAA
128 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAA
* * * * * *** *
21668 ATTGGTGGGAAAAAGGCCTTTCTTGCTAAACCAAGGCACCAATATCGTGTTTCCTTTTGAGAGGA
192 ATTGGT-GGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGA
* ** * * * * *
21733 CTACGTCAAT-GTGCCTAAT-TCTGAAAAGAATGGGGAGTAGGATGACTATTATTGGTTGTCTTA
256 CTATGTTTATGGTGCCTAATCT-TGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTA
* * * * *
21796 TTTAAGAGACAAACTTTGATTCGATAAAAAATGGTAGAAAGATAAGCTTTTCTTGCGACACCAAA
320 TTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAA
* * *
21861 GTATCAATGTCATGTAAT-CTAATGAAGGGAATATGTTCTTGGTTCCCAATCTATTGAAGAATGG
385 GCATCAATGTCATGT-ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCT-TTAAAGAATGG
*
21925 TGACTATTATGAGAATTGATGCTTG
448 TGACTATTATGAGAATCGATGCTTG
* *
21950 TCTTATTTAAAGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTTCCTTGCAAAT
1 TCTTATTT-AAGGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-
* *
22015 GAAAGTCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCTTAA-CACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
22079 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGTAGGAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* ** * *
22144 TGGTGGTAAAAATGCCTTTCCTATAAAACAAAACCATCAATATCGTGTATCCTAAAGAGAAGACT
194 TGGTGG-AAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACT
*
22209 ATGTTTATGGTGCCTAATCTTGAAAA-AATGGGGATTTGTATGACTATTAATGTTTGTCTTTTTT
258 ATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTT
* * * **
22273 AAGAGACAAACTATGATTCGATCAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGCA
323 AAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCA
* * * * * * *
22338 TGAATGTCATGTATCCTAATGAAGGGATTGTGTTTTTGGCTCCCAATCTTGTAAAGAGTGGAGAA
388 TCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTT-TAAAGAATGGTGAC
* *
22403 TGTTATGAGAATCGATTCTTG
452 TATTATGAGAATCGATGCTTG
*
22424 TCTTATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-
1 TCTTATTTAA-GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAG
* *
22488 AAAAT-AGTCAATATCATTTATCCT-AGTGAGGAGAATATGTTTATAGTGCCTAATCACATAATG
65 AAAATCA-TCAATATCATTTATCCTAAG-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * * * * * * *
22551 AATAAAGATCACTATTGGAACCCATGTTTGTGTCATTTGAGGCACAAACTTATAATTTATAGAAA
128 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * *
22616 TTGGTGCGAAAAAAGCCTTTCTTGCGAAACCAATGCTTTAATATCGTGTATCCTAATA-AGAAGA
193 TTGGTG-GAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAA-AGAGAAGA
* * * *
22680 CTATGTTTATGGTGCTTAATCTTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
256 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTAT
* * * * * * * *
22745 ATAAGACACAAACTTTGATTCTATCAAAAACAGTGGAAGGACAAGCTTTTCTTATGACACCAAGG
321 TTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAG
* * * * * * * *
22810 TATCAATGTCAAGTATCCTAATGAAGGAAATATGTTTTTTGTTCTCAAACTTCAAAAGAATGGAG
386 CATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTT-TAAAGAATGGTG
* ** *
22875 ACTGTTATGAGAATTAATGATTG
450 ACTATTATGAGAATCGATGCTTG
* * * * * * *
22898 TCTTACTTTAGGGA-AGTACTTTGATTTCAAGGAAAATAGGACAAAGAAAAGATTTTCATGGGAA
1 TCTTA-TTTAAGGATA-AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCAT-GCAA
* * * * * *
22962 AGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGCGTTTATAGCGCCTAGTCACATAATG
63 AGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * *
23027 AATGAAGATCATAACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTACAGAAT
128 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * * * **
23092 TTGGCGTGAAAAAAAT-CTTTTCTTGCGACACCAAAGTATCAATGTCATGTATCCTAATGAGGGG
193 TT-G-GTG-GAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAG
* * * * * *
23156 AATGTGTTTTTTGTTCCCAATCTTGAAAAGAATGG
255 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG
23191 AGACTGTTAC
Statistics
Matches: 2230, Mismatches: 360, Indels: 124
0.82 0.13 0.05
Matches are distributed among these distances:
460 22 0.01
461 4 0.00
465 1 0.00
466 201 0.09
467 159 0.07
468 19 0.01
469 297 0.13
470 48 0.02
471 4 0.00
472 45 0.02
473 148 0.07
474 540 0.24
475 148 0.07
476 461 0.21
477 119 0.05
478 14 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (472 bp):
TCTTATTTAAGGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAGA
AAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
GTGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATG
TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTAAAGAATGGTGACTATT
ATGAGAATCGATGCTTG
Found at i:23241 original size:318 final size:316
Alignment explanation
Indices: 22790--23411 Score: 913
Period size: 318 Copynumber: 2.0 Consensus size: 316
22780 GAAGGACAAG
* * *
22790 CTTTTCTTATGACACCAAGGTATCAATGTCAAGTATCCTAATGAAGGAAATATGTTTTTTGTTCT
1 CTTTTCTTACGACACCAAAGTATCAATGTCAAGTATCCTAATGAAGGAAATATGTTTTTTGTTCC
* *
22855 CAAACTTCAAAAGAATGGAGACTGTTATGAGAATTAATGATTGTCTTACTTTAGGGAAGTACTTT
66 CAAACTTCAAAAGAATGGAGACTGTTACGAGAATTAATGATTGTCTTACTTTAGGGAAGAACTTT
**
22920 GATTTCAAGGAAAAT-AGGACAAAGAAAAGATTTTCATGGGAAAGAAAATCATCAAAATCATTTA
131 GATTTCAAGGAAAATAAGG-CAAAG--AAGATTTTCATGCAAAAGAAAATCATCAAAATCATTTA
* * * * * * *
22984 TCCTAATGAGGAGAATGCGTTTATAGCGCCTAGTCACATAATGAATGAAGATCATAACTGGAATC
193 GCCTAATGAGGAGAACGCGTTTATAGCACCTAATCACATAATAAATGAAGATCATAACTGAAACC
*
23049 CATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTACAGAATTTGGCGTGAAAAAAAT
258 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAATTTGGCGTGAAAAAAAT
* * * * *
23108 CTTTTCTTGCGACACCAAAGTATCAATGTCATGTATCCTAATGAGGGGAATGTGTTTTTTGTTCC
1 CTTTTCTTACGACACCAAAGTATCAATGTCAAGTATCCTAATGAAGGAAATATGTTTTTTGTTCC
* * * *
23173 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATTAATTATTGTCTTACTTTATGGAAGAACTTT
66 CAAACTTCAAAAGAATGGAGACTGTTACGAGAATTAATGATTGTCTTACTTTAGGGAAGAACTTT
* * *
23238 GATTTCGAGGAAAATAAGGCAAAGAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTAGCC
131 GATTTCAAGGAAAATAAGGCAAAGAAGATTTTCATGCAAAAGAAAATCATCAAAATCATTTAGCC
* ** * *
23303 TAATGAGGAGAACGTGTTTATAGCATTTAATCACATAATAAATGAAGATCATTACTGAAACCCTT
196 TAATGAGGAGAACGCGTTTATAGCACCTAATCACATAATAAATGAAGATCATAACTGAAACCCAT
*
23368 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAGAATTTGG
261 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAATTTGG
23412 TAAGGAAAAA
Statistics
Matches: 270, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
316 132 0.49
318 135 0.50
319 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (316 bp):
CTTTTCTTACGACACCAAAGTATCAATGTCAAGTATCCTAATGAAGGAAATATGTTTTTTGTTCC
CAAACTTCAAAAGAATGGAGACTGTTACGAGAATTAATGATTGTCTTACTTTAGGGAAGAACTTT
GATTTCAAGGAAAATAAGGCAAAGAAGATTTTCATGCAAAAGAAAATCATCAAAATCATTTAGCC
TAATGAGGAGAACGCGTTTATAGCACCTAATCACATAATAAATGAAGATCATAACTGAAACCCAT
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAATTTGGCGTGAAAAAAAT
Found at i:24163 original size:792 final size:790
Alignment explanation
Indices: 22456--24037 Score: 1702
Period size: 792 Copynumber: 2.0 Consensus size: 790
22446 GATTTTAAGA
* * ** * *
22456 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAATAG--TCAATATCATTTATCCTAGTGAG
1 AAAATAAGGC-AA-AAAAGATTTTCATGCAAAACAAA-AGCATCAATATCACGTAGCCTAATGAG
** * * * * ** * *
22518 GAGAATATGTTTATAG--TGCCTAATCACATAATGAATAAAGATCACTATTGGAACCCATGTTTG
63 GAGAACGTGTTTATAGCAT-TC-AATCACATAATAAATGAAGATCATTACAGAAACCCTTGTTTG
* * **
22581 TGTCATTTGAGGCACAAACTTATAATTTATAGAAATTGGTGCGAAAAAAGCCTTTCTTGCGAAAC
126 TCTCATTTGAGGCACAAACTTAGAATTTATAGAAATTGGTAAGAAAAAAGCCTTTCTTGCGAAAC
* * * * * *
22646 CAATGCTTTAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAAAA
191 CAAGGCATCAATATCGTGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCGTGAAAAAAA
*
22711 TGGGGATTAGTATGACTATTCATGTTTGTCTTATATAAGACACAAACTTTGATTCTATCAAAAAC
256 TGGGGATTAGTATGACTATTCATGTTTGTCTTATATAAGACACAAACTTTGATTCGATCAAAAAC
* * * * * *
22776 AGTGGAAGGACAAGCTTTTCTTATGACACCAAGGTATCAATGTCAAGTATCCTAATGAAGGAAAT
321 AGTGGAAAGAAAAGATTTTCTTATGACACCAAAGCATCAATGTCAAGTACCCTAATGAAGGAAAT
* * * * * *
22841 ATGTTTTTTGTTCTCAAACTTCAAAAGAATGGAGACTGTTATGAGAATTAATGATTGTCTTACTT
386 ATGTTTTTGGTTCACAAACTTCAAAACAATGGAGACTCTTACGAGAATCAATGATTGTCTTACTT
* * *
22906 TAGGGAAGTACTTTGATTTCAAGGAAAATAGGACAAAGAAAAGATTTTCATGGGAAAGAAAATCA
451 TAGGGAAGAACTTTGATTTCAAGGAAAATAGGACAAAGAAAAGATTTCCATGGAAAAGAAAATCA
* * * * *
22971 TCAAAATCATTTATCCTAATGAGGAGAATGCGTTTATAGCGCCTAGTCACATAATGAATGAAGAT
516 TCAAAATCATTCATCATAATGAGGAGAATGCATTTATAGCGCCTAATCACAAAATGAATGAAGAT
* * * * * *
23036 CATAACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTACAGAATTTGGCGTGA
581 CATAACTAGAATCCATGTTTCTCTCATCTGAGGCACGAACTTAGACTTTACAGAAATTGGAGT--
* * * * * ** * *
23101 AAAAAATCTTTTCTTGCGACACCAAAGTATCAATGTCATGTATCCTAATGAGGGGAATGTGTTTT
644 AAAAAATCCTTTCTTACAAAACCAAAGTATCAATATCATGTATCCTAATGAGAAGAATATGTTTA
* * * * * **
23166 TTGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATTAATTATTGTCTTACTTTATGGAA
709 TGGTGCCCAACCCTGAAAAGAATGGAGACTGTTACGACAATTAATTATTGTCTTACTTTAAAGAA
* *
23231 GAACTTTGATTTCGAGG
774 GAACTTCGATTTCGAGC
* * * * **
23248 AAAATAAGGCAAAGAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTAGCCTAATGAGGAG
1 AAAATAAGGCAAAAAAGATTTTCATGCAAAACAAAAGCATCAATATCACGTAGCCTAATGAGGAG
* *
23313 AACGTGTTTATAGCATTTAATCACATAATAAATGAAGATCATTACTGAAACCCTTGTTTGTCTCA
66 AACGTGTTTATAGCATTCAATCACATAATAAATGAAGATCATTACAGAAACCCTTGTTTGTCTCA
* * * * * *
23378 TTTGAGGCACGAACTTAGACTTTATAGAATTTGGTAAGGAAAAATCCTTTCTTGTGAAACCAAGG
131 TTTGAGGCACAAACTTAGAATTTATAGAAATTGGTAAGAAAAAAGCCTTTCTTGCGAAACCAAGG
** *
23443 CATCAATATCGTGTATCCTTGTGAGAAAACTATGTTTATGGTGCCTAATCGT-AAAAAGAATGGG
196 CATCAATATCGTGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCGTGAAAAA-AATGGG
* * **
23507 GATTAGTATGACTATT-ATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAATGGT
260 GATTAGTATGACTATTCA-TGTTTGTCTTATATAAGACACAAACTTTGATTCGATCAAAAACAGT
* * *
23571 GGAAAGAAAAGATTTT-TT-TGCAACACCAAAGCATCAATGTCAGGTACCCTAATGATGGGAATA
324 GGAAAGAAAAGATTTTCTTATG--ACACCAAAGCATCAATGTCAAGTACCCTAATGAAGGAAATA
* * * * * *
23634 TGTTTTTGGTTCACAATCGTT-TAAACTATGGTA-ACTCTTGCGAGAATCGATGCTTGTCTTA-T
387 TGTTTTTGGTTCACAAAC-TTCAAAACAATGG-AGACTCTTACGAGAATCAATGATTGTCTTACT
* ** *
23696 TTAAGGGATA-AACTTTGATTTTAATTAAAATAGGGCAAAGAAAA-ATTTCCATGGAAAAGAAAA
450 TT-AGGGA-AGAACTTTGATTTCAAGGAAAATAGGACAAAGAAAAGATTTCCATGGAAAAGAAAA
* * *
23759 TCATCAATATCATTCATCAT-ATGGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGA
513 TCATCAAAATCATTCATCATAAT-GAGGAGAATGCATTTATAGCGCCTAATCACAAAATGAATGA
*
23823 AGATCATTACTAGAATCCATGTTTCTCTCATCTGAGGCACGAACTTAGACTTTACCA-AAATTGG
577 AGATCATAACTAGAATCCATGTTTCTCTCATCTGAGGCACGAACTTAGACTTTA-CAGAAATTGG
* * * * *
23887 AAGT-AAAAATGCCTTTCTTACAAAACTAAACG-ATCAGTAT-ATGTATTCTGATGAGAAGACTA
641 -AGTAAAAAAT-CCTTTCTTACAAAACCAAA-GTATCAATATCATGTATCCTAATGAGAAGAATA
* * * * *
23949 TGTTTATGGTGCCTAACCCTGAAAA-AATGGGGA-TTTGTATGACTATTAATGT-TTGTCTTA-T
703 TGTTTATGGTGCCCAACCCTGAAAAGAATGGAGACTGT-TACGACAATTAAT-TATTGTCTTACT
*
24010 TTAAAGATA-AACTTCGA-TTCGATC
766 TTAAAGA-AGAACTTCGATTTCGAGC
24034 AAAA
1 AAAA
24038 ACGATGGATA
Statistics
Matches: 657, Mismatches: 112, Indels: 48
0.80 0.14 0.06
Matches are distributed among these distances:
786 9 0.01
787 15 0.02
788 26 0.04
789 42 0.06
790 42 0.06
791 142 0.22
792 376 0.57
793 4 0.01
794 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (790 bp):
AAAATAAGGCAAAAAAGATTTTCATGCAAAACAAAAGCATCAATATCACGTAGCCTAATGAGGAG
AACGTGTTTATAGCATTCAATCACATAATAAATGAAGATCATTACAGAAACCCTTGTTTGTCTCA
TTTGAGGCACAAACTTAGAATTTATAGAAATTGGTAAGAAAAAAGCCTTTCTTGCGAAACCAAGG
CATCAATATCGTGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCGTGAAAAAAATGGGG
ATTAGTATGACTATTCATGTTTGTCTTATATAAGACACAAACTTTGATTCGATCAAAAACAGTGG
AAAGAAAAGATTTTCTTATGACACCAAAGCATCAATGTCAAGTACCCTAATGAAGGAAATATGTT
TTTGGTTCACAAACTTCAAAACAATGGAGACTCTTACGAGAATCAATGATTGTCTTACTTTAGGG
AAGAACTTTGATTTCAAGGAAAATAGGACAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAAA
ATCATTCATCATAATGAGGAGAATGCATTTATAGCGCCTAATCACAAAATGAATGAAGATCATAA
CTAGAATCCATGTTTCTCTCATCTGAGGCACGAACTTAGACTTTACAGAAATTGGAGTAAAAAAT
CCTTTCTTACAAAACCAAAGTATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
CAACCCTGAAAAGAATGGAGACTGTTACGACAATTAATTATTGTCTTACTTTAAAGAAGAACTTC
GATTTCGAGC
Found at i:25078 original size:32 final size:32
Alignment explanation
Indices: 25037--25103 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
25027 CAATGTCATG
25037 TAACCTAATGAAGGGAATGTGTTTTTTGTTCC
1 TAACCTAATGAAGGGAATGTGTTTTTTGTTCC
25069 TAACCTAATGAAGGGAATGTGTTTTTTGTTCC
1 TAACCTAATGAAGGGAATGTGTTTTTTGTTCC
25101 TAA
1 TAA
25104 TTTTTTTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (32 bp):
TAACCTAATGAAGGGAATGTGTTTTTTGTTCC
Found at i:27033 original size:316 final size:318
Alignment explanation
Indices: 26438--27069 Score: 815
Period size: 316 Copynumber: 2.0 Consensus size: 318
26428 AAAAACGGTG
* *
26438 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTGTCGCGTATCCTAATGAAGGAAATGTAT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGAAATGTAT
** * * *
26503 TTTTGGTTTGCAATCTCTTAAAGAGTGGAGACTGTGACAAGAATTGATTCTTGTCTTATTTAAGG
66 TTTTGGTTCCCAATCTCTTAAAGAATGGAGACTGTGACAAGAATTAATTATTGTCTTATTTAAGG
** * *
26568 GGTGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCGTCAA
131 GAAGAACTTTGATTTCAAGAAAAATAAGGCAAAG-AAAGATTTCCACGCAAAAGAAAATCGTCAA
* * * * *
26633 AATCATTTATCCTAATGAGGAGAATGCGTTTATAGCGCCTAGTCACATAATGAATGAAGATCATA
195 AATCATTTAGCCTAATGAGGAGAACGCGTTTATAGCACCTAATCACATAATAAATGAAGATCATA
** * *
26698 ACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTACAGAATTTGGCGT
260 ACTAAAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAATTTGGCGT
* * * * * *
26757 GAAA-AAAATCTTTTCTTGCGACACCAAAGTATCAATGTCATGTATCCTAATGAGGGGAATGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGAAATGTAT
* * *
26821 TTTTTGTTCCCAAT-T-TTGAAAAGAATGGAGACTGTTACGAGAATTAATTATTGTCTTACTTT-
66 TTTTGGTTCCCAATCTCTT--AAAGAATGGAGACTGTGACAAGAATTAATTATTGTCTTA-TTTA
* * * * * *
26883 ATGGAAGAACTTTGATTTCGAGGAAAATAAGGCAAAG-AAGATTTTCATGCAAAAGAAAATCTTC
128 AGGGAAGAACTTTGATTTCAAGAAAAATAAGGCAAAGAAAGATTTCCACGCAAAAGAAAATCGTC
* * **
26947 AATATCATTTAGCCTAATGAGGAGAACGTGTTTATAGCATTTAATCACATAATAAATGAAGATCA
193 AAAATCATTTAGCCTAATGAGGAGAACGCGTTTATAGCACCTAATCACATAATAAATGAAGATCA
* * *
27012 TTACTAAAACCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAGAATTTGG
258 TAACTAAAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAATTTGG
27070 TAAGGAAAAA
Statistics
Matches: 268, Mismatches: 42, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
316 133 0.50
317 1 0.00
318 127 0.47
319 7 0.03
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (318 bp):
GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGAAATGTAT
TTTTGGTTCCCAATCTCTTAAAGAATGGAGACTGTGACAAGAATTAATTATTGTCTTATTTAAGG
GAAGAACTTTGATTTCAAGAAAAATAAGGCAAAGAAAGATTTCCACGCAAAAGAAAATCGTCAAA
ATCATTTAGCCTAATGAGGAGAACGCGTTTATAGCACCTAATCACATAATAAATGAAGATCATAA
CTAAAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAATTTGGCGT
Found at i:27616 original size:474 final size:476
Alignment explanation
Indices: 26757--35183 Score: 8941
Period size: 474 Copynumber: 17.8 Consensus size: 476
26747 AATTTGGCGT
* * * *
26757 GAAA-AAAATCTTTTCTTGCGACACCAAAGTATCAATGTCATGTATCCTAATGAGGGGAATGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * ** **
26821 TTTTTGTTCCCAAT-TTTGAAAAGAATGG-AGACTGTTACGAGAATTAATTATTGTCTTACTTT-
66 TTTTGGTTCCCAATCTTT-TAAAGAATGGTA-ACTGTTACGAGAATCGATGCTTGTCTTA-TTTA
* ** * * * *
26883 ATGGA-AGAACTTTGATTTCGAGGAAAATAAGGCAAAG--AAGATTTTCATGCAAAAGAAAATCT
128 AGGGATA-AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * **** * *
26945 TCAATATCATTTAGCCTAATGAGGAGAACGTGTTTATAGCATTTAATCACATAATAAATGAAGAT
192 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * * *
27010 CATTACTAAAACCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAGAATTTGGTAAGG
257 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGG
* * * ** *
27075 AAAAAT-CCTTTCTTGTGAAACCAAGGCATCAATATCGTGTATCCTTGTGAGAAAACTATGTTTA
321 AAAAATGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* *
27139 TGGTGCCTAATCGTAAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGAC
386 TGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGAC
*
27204 AAACTTTGATTCGATCAAAAATGGTG
451 AAACTTTGATTCGATCAAAAACGGTG
* * * * * *
27230 GAAAGAAAAGATTTTTTTGCAACACCAAAGCATCAATGTCAGGTACCCTAATGATGGGAATATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * ** * *
27295 TTTTGGTTCACAATCGTTTAAACTATGGTAACTCTTGCGAGAATCGATGCTTGTCTTATTTAAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* *
27360 GATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAA-ATTTCCATGGAAAAGAAAATCATCAA
131 GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * *
27424 TATCATTCATCAT-ATGGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
196 TATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * ** *
27488 TACTAGAATCCATGTTTCTCTCATCTGAGGCACGAACTTAGACTTTACCAAAATTGGAAGTAAAA
260 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
* * * * * *
27553 ATGCCTTTCTTACAAAACTAAACG-ATCAGTAT-ATGTATTCTGATGAGAAGACTATGTTTATGG
325 ATGCCTTTCTTGCGAAAC-AAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * **
27616 TGCCTAACCCTGAAAA-AATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAA-AGATGAA
389 TGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACAAA
* *
27679 CTTCGATTCGATCAAAAACGATG
454 CTTTGATTCGATCAAAAACGGTG
* * * * * *
27702 GATAGAAAAGCTTTTCTTGCGACACCAAAGGATCAATGTCACGTATCCTAATGAATGGAATGTGC
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * *
27767 TTTTGGTT-CCAATCTTTTAAAGAATGG-AGACTGTTACAAGAATCAATTCTTGTTTTATTTAAG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * *
27830 GGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCA
130 GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * *
27895 ATATCATTTATCGTAATGA-GAGAACGTGTTTATAGTTCCTAATCACATAATGAATGAAGATCAT
195 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * ** * *
27959 TACT-GAAACGCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTGTAGAAATTGGTGCGAAA
260 TACTAGAATC-CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAA
* * * *
28023 AAAT-CCTTTCTTGCGAAACGAAGGCATCAATATCGTGTATCATTATGAGAAGACTATGTTTATG
323 AAATGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
28087 G-GCCTTAATCTTGAAAAGTATAGGGATTAGTAGGACTATTACTGTTTATCTTATTTGATAGACA
388 GTGCC-TAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACA
* **
28151 AACTTTGATTCTATCAAAAACCATG
452 AACTTTGATTCGATCAAAAACGGTG
* *
28176 GAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * ** * *
28241 TTTTGGTTCCTAATCTTTTAAGGAATGGTGACAATTACGAGAATCGATTCTTCTCTTATTTAAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * * * *
28306 GATAAACTTTGATTTTAATTAAAATAAGGTAAATAAAATATTTCCATCCAAAAGAAAATCATCAA
131 GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
*
28371 TATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
196 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * **
28436 ATTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGTTAAAGA
261 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA-A
* * * * *
28501 A-ACCCTTCTTGCAAAACCAAAGTG--TCAATATAATGTATCCTAATAAGAAGACTATGTTTATG
325 ATGCCTTTCTTGCGAAA-CAAAG-GCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
28563 GTGCGTAAGCGTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTT-TTTAAAGAGACA
388 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTT-AAGAGACA
** * *
28627 AACTTTGATTTAATAAAAAACGGAG
452 AACTTTGATTCGATCAAAAACGGTG
* * *
28652 GAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * * * * *
28717 TTTTTGTTCCTAATTTTTTTAAA-AATGG-AGACTGTTAAGAGAATCAATTCTTGTCTTGTTTAA
66 TTTTGGTTCCCAA-TCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGATGCTTGTCTTATTTAA
* * * * * * * *
28780 AGGATGAACTTTGATTTTCAGAAAAATAGGGTAAAGAAAAGATTTCTATGAAAAAGAAAATTATC
129 GGGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * *
28845 AATATCATTTATCCTAATGAGGAGAAT-TATTTATAGTGCCTAATCACATAATGTATGAAGATCA
194 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* ** * * * * * * ** *
28909 TTTCCGGAACCCATTTTTGTCTTATTTGAGGCACAAACTTATACTTTATAGCAATTGGTGCGAGA
259 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-A
* * * * * *
28974 AAA-GCCTTTCTTGTGAAACTAAGGCAACAATATCGTGCATCCCAATGAGAAGACTATGTTTATG
323 AAATGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
29038 GTGCCTAGTCTTGAAAAGAA-GGGGATTAGTGTGACTATTCA-TGTTTGTCTTATATATGACACA
388 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATT-ATTGTTTGTCTTATTTAAGAGACA
* *
29101 AACTTTGATTCTATCAAAAATGGTG
452 AACTTTGATTCGATCAAAAACGGTG
* * * * * * *
29126 GAAGGAAAAGCTTTTCTTACGATACCAAAACATCAATGTCAAGTATCCTAATAAAGGGAATCTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* ** * * * *
29191 TTTTTGTT-CCAATCTTGAAAAGAATGG-AGACTATTACGAGAAT-TAGTGATTGTCGTATTTTA
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGA-TGCTTGTCTTA-TTTA
* * * * *
29253 A-GGA-AGAACTTTGATTTCAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCT
128 AGGGATA-AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
29316 TCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGCGCCTAATCACATAATGAATGAAGAT
192 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * *
29381 CATTACTAGAACCCTTGTTTGTCTCATTTGAGGCACGGACTTAGACTTTATAGAATTTGGTGGGA
257 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* ** * * * ** * *
29446 ATAAA-GCTTTTCTTATGAAACCAAGGCATCAATGTCGTGTATCCTTGTGAAAAAACTATGTTTA
322 A-AAATGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * *
29510 TGGTGCCTAATC-CGAAAAAGAATGGAGATTAGTATGACTCTTATTGTTTGTCTTATTTAAAAGA
386 TGGTGCCTAATCTTG-AAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGA
* *
29574 CAAACTTTAATTCGATCAAAAACGATG
450 CAAACTTTGATTCGATCAAAAACGGTG
* *
29601 GAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAAATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * * * *
29666 TTTTGGTTCCCAATCTTTTAAAAAATGGTGACTATTATGAGAATCGATGCTTGTCTTTTTTGAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
*** * * *
29731 GATAAACTTTGATTTTTTTTTAAAATAGGGCAAAGAAAAGATTTCCAAGCAAACGAAAATCATTA
131 GATAAACTTTGA-TTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * *
29796 ATATCATTTATCCTCA--A-GAG--T-TAG---A-A-TG--T-GTCACAAAATGAATGAACATCA
195 ATATCATTTATCCTAATGAGGAGAATGT-GTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
29847 TTACTAGAATCCATGTTTGTCTCTTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGTAGA
259 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * *
29912 AATGCCTTTCTTGTGAAACCAAA-CCATCAATATCATGTATCCTAATGAGAAAACT-TGTTTATC
324 AATGCCTTTCTTGCGAAA-CAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
29975 GTGGCTAATCTTGAAAAGAATGAGGATTTGTATGCCTACTAATGTTTGTCTTGTTTAAGAGACAA
388 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACAA
*
30040 ACTTCGATTCGATCAAAAACGGTG
453 ACTTTGATTCGATCAAAAACGGTG
* ** * * *
30064 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTGTCGCGTATCCTAATGAAGGAAATGTAT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
** * * * * * *
30129 TTTTGGTTTGCAATCTCTTAAAGAGTGG-AGACTGTGACAAGAATTGATTCTTGTCTTATTTAAG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * * *
30193 GGGTGAACTTTGATTTTAAGAAAAATAGGGCAAATAAAAGATTTCCACGCAAAAGAAAATCATCA
130 GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * *
30258 ATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAGTCACAAAAAGAATGAAGATCAT
195 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * * * * * * * *
30323 TACTGGAACCCATGTTTATCTCATTAGAGGCATGAACTTAGACTTTGCAGAATTTAGTGTGAAAA
260 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
** * * * *
30388 AAACCTTTCTTGTGAAACCAAGGCATCAATATCATGTA-CCATTATGAGAATACTATGTTTATGG
325 ATGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCC-TAATGAGAAGACTATGTTTATGG
* * *
30452 -GTCCTAATCTTGAAAAGTATGGGGATTAGTATGACTATTATTGTTTGCCTTATTTGAGAGA-AA
389 TG-CCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACAA
* *
30515 ACTTTGATTCGATCACAAA-GCATG
453 ACTTTGATTCGATCAAAAACG-GTG
30539 GAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
** * * * * * *
30603 TTTTGGTTCCCAATCTTTTAGGGAATGGTGACTATTACAATAATCGATTCTTCTCTTATTTAAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * * *
30668 GATAAACTTTGATTTTAATTAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAAAAAATTATGAA
131 GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* *
30733 TATCATTTATCCTAATGCGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
196 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * *
30798 ACTAGAGTCCATGTTTGCCTCATTTGAGGCATGAATTTAGACTTTACAAAAATTGGCGGGAAAAA
261 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
* * * *
30863 AG-CTCTTCTTCCAAAACTAAA-GCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
326 TGCCT-TTCTTGCGAAAC-AAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * * *
30926 TGCCTAACCCT-AAAAAAATGGGGATTTGTATGGCTATTAATGTTTGTCGTT-TTTAGGAGACAA
389 TGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTC-TTATTTAAGAGACAA
* ** *
30989 ACTTTGATTCAATCAAAAGTGGAG
453 ACTTTGATTCGATCAAAAACGGTG
* *
31013 GAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * * *
31078 TTTTGGTTCCTAATCTTTTAAAGAATGG-AGACTATTACAAGAATCAATTCTTGTCTTATTTAAG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * * * *
31142 GGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAGAAGATTTACATGCAAAAAAAAATCATCA
130 GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * * * * *
31207 ATATCATTTATCCTAATGAGAAGAAT-CGTTTATAGTGACTAATGACATAATGAGTGAAGATCTT
195 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* ** * * * * * * * * * * *
31271 TGCCGGAAACCATATTTGTATCATTTAAGGCACAAACTTATACTTTATAGAAAGTGGT-GCAGAA
260 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
* * * **
31335 ATAGCCTTTCTTGCGAAACCAAGGAATCAATATCATGTATTCTAACAAGAAGACTATGTTTATGG
325 AT-GCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
31400 TGCCTAATCTTAAAAAGAATAGGGATTAGTATTACTACTGATT-TTTGTCTTATATAAGACG-CA
389 TGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA-TTATTGTTTGTCTTATTTAAGA-GACA
** **
31463 AACTTTGATTATATCAAAAATAGTG
452 AACTTTGATTCGATCAAAAACGGTG
* * * * * *
31488 GAAGGAAAAGCTTTTCTTGTGACA-CAAAACATTAATGTCAAGTATCCTAATGAAGGGAATGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * ** * * * * * *
31552 TTTTCGTT-CCAATCATGAAAAGAATGG-AGACTATTACCAGAAT-TAGTGATTGCCTTATTTTA
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGA-TGCTTGTCTTATTTAA
* * * * *
31614 GGGA-AGAACTTTGATTTCAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTT
129 GGGATA-AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * * *
31678 CAATACCACTTATCCTAATGAGGAGAATATGTTTATAGCGCCCAATCACATAATGAATGAAGATC
193 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
** * * * * *
31743 ATTACCGGAA-CTCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTATAGAATTTGGTGGGA
258 ATTACTAGAATC-CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* * * * ** * *
31807 ATAAA-G-ATGTTCTTGCCAAACCAAGGCATCAATATCGTGTATCCTTGTGAAAAAACTATGTTT
322 A-AAATGCCT-TTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * *
31870 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAAGACTATTATTGTTTGTCTTATTTAACAGA
385 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGA
* * **
31935 CAAACTTTAATTCGATAAAAAAATGTG
450 CAAACTTTGATTCGATCAAAAACGGTG
* * *
31962 GAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCGATGTCATGTATCCTAATGAAGGGAAAATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * ** * *
32027 TTTTGGTTCCCAATCTTTTAAAGAATGGTGACTGTTACGAGAATTGACACTTGTCTTCTTTAAGC
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * *
32092 GATAAACTTTGATTTTAATTAAAATATGGAAAAGAAAAGATTTTCATGCAAAA-AAAATCATCAA
131 GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * * * * * **
32156 TATCATTTATCCTAAGGAAGAGAATGTTTTTATAATGCCTAATCAAAAAATAAATAAAGATTTTT
196 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * *
32221 GCTAGAATCCATGTTTGTCTCATTT-AGGGCACAAACTTAGACTTTACAAAAATTGGTAGTAAAA
261 ACTAGAATCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
* * * * * * * **
32285 GTGCCTGTCTTACGAAACCAAA-CCATTAATATCATGTATTCTAATGAGAAGACTATCTTTGCGG
325 ATGCCTTTCTTGCGAAA-CAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
32349 GGCTTAATCCTGAAAAGAATGGGGATTTGTATGACTATTATTGTTTGTCTTATTTAAGGGACAAA
389 TGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACAAA
* * *
32414 CTTTGATTCGGTCAACAACGATG
454 CTTTGATTCGATCAAAAACGGTG
* ** * *
32437 GAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCGGTGTCATGTATCCTAAAGAAGGGAATATGA
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * *
32502 TTTTGGTT-TCAATCTTTTAAAGAATGGTGACTGTTATGGGAATCGATGCTTGTCTTATTTAAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * * * *
32566 GGTAAACTTTGATATCAACTAAAATAGGGTAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAA
131 GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* ***
32631 TATCATTTATCCTAA-GAGGGAGAA--TG----T-GT--C----C-CATAATGAGCAAAGATCAT
196 TATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* *
32681 TAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAA
260 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
* * * * *
32746 ATGCCTTCCCTGTGAAACCAAA-CCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGG
325 ATGCCTTTCTTGCGAAA-CAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
32810 TGCCTAATCTTGAAAATAATGGGGATTTGTATGACT-TTAATGTTTGTCTTATTGCAA-AGACAA
389 TGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATT-TAAGAGACAA
**
32873 ACTTTGATTCGATCAAAAATAGTG
453 ACTTTGATTCGATCAAAAACGGTG
* * * *
32897 GAAAGAAAAGCTTTTCTTGCGACACTATAGCATCAATGTCA-GCTATCCTAAAGAAGGGAAAATG
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGGGAATATG
* * * ** * * *
32961 TTTTTGGTTCCCAATCTTTTTAAGAATAGTTACTGTTGTGAGAATCGATACTTGTCTTAGTGAAG
65 TTTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* *
33026 GGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCA
130 GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * *
33091 AAATCATTTATCCTGATGAGGGGAATGTGTTTATGGTG-CTAAATCACAAAATGAATGAAGATCA
195 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCA
* * ** * *
33155 TTAC-AAAATCCGTGTTTGTCTCATTTGAGGCTTGAACATAGACTTTACAAAAATTGGTAGGAAA
259 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * * *
33219 AGA-GCCTTTCTTGC-AACGCCAAA-GCATCAATATGATGTATCGTAAAGAGAAGACTATGCTTA
324 A-ATGCCTTTCTTGCGAA--ACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * *
33281 TGGTGCATAATCATGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTTATTTAAGAGAC
386 TGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGAC
* *
33346 AAACATTGATTCGATCAAAAACAGTG
451 AAACTTTGATTCGATCAAAAACGGTG
* * * * * *
33372 GAATGAAAAGCTTTTCTTGCGACACCAAAGCATCCATGTTATGTA-CCTAATGACGGGATTGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* ** * * *
33436 TTTTGGTTCCCAATCTTTTAAATAATGGGGAC-GAATACGAGAATCAATGCTTGTCTTATTTAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTG-TTACGAGAATCGATGCTTGTCTTATTTAAG
* * * *
33500 GGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCATAAGAAAATTATCA
130 GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * *
33565 ATATCA-TTATCCTAATGTGGAGAATGTGTTTATAGTGCCTAATCACATAATGAATAAAGATCAT
195 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * * * * * *
33629 TACTAGAACCCATATTTGTCTCATTTGAAGCATGAACATAGACTTTATAAAAATTAGTGCGAAAA
260 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
* * *
33694 AAGCCTTTTTTGCGAAACCAAGGCATCAATATCATGTATCCCT-ATGAGAAGACTATGTTTATGG
325 ATGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTAT-CCTAATGAGAAGACTATGTTTATGG
*** * * * *
33758 TGCCTAATCTTGAAAAGAAAATGTATTAGTATGACTATTATTG-TTATCTTATTTAAGAGATAAT
389 TGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACAAA
* *
33822 CTTTGATTCAATCAAAAACCGTG
454 CTTTGATTCGATCAAAAACGGTG
* * * * * * *
33845 AAAAGAAAAGCTTTTCCTACAACACTAGAGCATCAATGTCATGTATCCTAATGAAGGGACTATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * * * * * *
33910 TTTTTGTTCCCAATCTTTTAAGGAATGGTGACTGTTATGAGAATTGATGCTAGTTTTTTTTAAGG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * *
33975 GATAAACTTTGATTTAAATTAAAAAAGGGCAAAGAAAAGATTTCCATGCAGAAA-AAAAACATCA
131 GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAATCATCA
* *
34039 ATATCATTTACCCTAA-GAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
195 ATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
34103 TTACTAGAATCTATGTTTGTC-CAATTTGAGGCAC-AGACTTAGACTTTACAAAAATTGGTGGTA
259 TTACTAGAATCCATGTTTGTCTC-ATTTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGGGA
* ** * * ** * *
34166 AAAAGGGTTTTCTTGCGAAGCTAATCCATTAATATCGA-GTAAT-CTAATGAGAAGACTATATTT
322 AAAATGCCTTTCTTGCGAAACAAAGGCATCAATATC-ATGT-ATCCTAATGAGAAGACTATGTTT
* * *
34229 ATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTATTGTTTGTCCTATTTAAAAGA
385 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGA
*
34294 CAAATTTTGATTCGATC-AAAACAGGTG
450 CAAACTTTGATTCGATCAAAAAC-GGTG
* * * * ** * *
34321 CACAGAAAAGCTTTTCTTGCAACACCAAGGCATCAATAACATGTATCCTAATAAAGGGAAAATGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* * * * * * *
34386 TTTTGGTTCCCAAT-TTGTTAAAGAATGGTGATTGCTATGAGAATCAATCCATGT-TTGATTTAA
66 TTTTGGTTCCCAATCTT-TTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTT-ATTTAA
* * * *
34449 GGGATAAACTTTGACTTTAATTAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATA
129 GGGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * *
34514 AATATCATTTATTCTAATGAGAAGAAGGTGTTTATAGTGCCTAATCACGAAATGAATGACGATCA
194 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * ** * * * **
34579 TTACTGGAACCCATGTTTGTCTTGTTCGAGGTACGAACTTAGACTTTTCAAAAATTCTTGGGAAA
259 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * * *
34644 AAAGCCTTTCTTGCGAAACCAAA-TCATCAATATGATGTATCTTAAGGAGAAGACTATGTTTATG
324 AATGCCTTTCTTGCGAAA-CAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
34708 GTGCCTAATGGTGGAAATGAACGGGGATTAGTATGAGTATTCA-TGTTTGTCTTAATTAAGAGGC
388 GTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGACTATT-ATTGTTTGTCTTATTTAAGAGAC
* * *
34772 AAACTTTGGTTCTATCAAAAATGGTG
451 AAACTTTGATTCGATCAAAAACGGTG
* * * * * *
34798 GAAAGGAAAGTTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCATAATAAAGGGAATGTGT
1 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
* ** * *
34863 TTTTGGTTCTCAATCTTGAAAAGAATGG-AGACTGTTATGAGAATCAATGCTTGTCTTATTTAAG
66 TTTTGGTTCCCAATCTTTTAAAGAATGGTA-ACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * ** **
34927 GGATGAACTTTGATTTCAAGTAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATTGTCA
130 GGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * *
34992 ATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGATCAC
195 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * *
35057 T-CATAGAATCCACGTTTATCTCATTTGAGGCACGAACTTAGAATTTAAAAAAATTGGTGGG-AA
260 TAC-TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * *
35120 AATGCCTTT-TTGCGAAAGCAAA-ACATCAATATCGTGTATCCTAATGAAAAGACTATGTTTATG
324 AATGCCTTTCTTGCGAAA-CAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
35183 G
388 G
35184 CCCCAATCAT
Statistics
Matches: 6621, Mismatches: 1159, Indels: 346
0.81 0.14 0.04
Matches are distributed among these distances:
459 1 0.00
460 104 0.02
461 279 0.04
462 63 0.01
463 202 0.03
464 114 0.02
465 7 0.00
466 1 0.00
467 3 0.00
468 5 0.00
469 3 0.00
470 9 0.00
471 188 0.03
472 180 0.03
473 499 0.08
474 1921 0.29
475 1679 0.25
476 952 0.14
477 401 0.06
478 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT
TTTTGGTTCCCAATCTTTTAAAGAATGGTAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
GATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
TGCCTTTCTTGCGAAACAAAGGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTG
CCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCTTATTTAAGAGACAAACT
TTGATTCGATCAAAAACGGTG
Found at i:36460 original size:476 final size:474
Alignment explanation
Indices: 35565--38823 Score: 3695
Period size: 476 Copynumber: 6.9 Consensus size: 474
35555 AGGATGAACA
* * * * ** * * *
35565 TTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTTTTGAAACACCAACGCATCAATGTTATGC
1 TTGATTCGATCAAAAAC-ATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * ** * *
35630 ATCCTAACGAAGTGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAAT
65 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGACTGTTACGAGAAT
* * * *
35695 CAATGCTTGTCTTATTTAAGGGATGAACTTTTATTTT-ATGAAAAATAAGGCAAAGAAAAGATTT
130 CAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAT-TAAAATAGGGCAAAGAAAAGATTT
* * * * * * *
35759 CAATGCAAAAGAAAATCATCAGTATCATTTACCCTATTGAAGAGAATGTGTTTATAATG-CTGGA
194 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AA
* * * * **
35823 TCACAAAATGAATTAAGATCATTATTGGAATCCTTGTTTGTCTCATTT-AGAGCATAAACTTAGA
258 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGA
* * * * *
35887 CTTTACAAAAATTGTTGGTACAAATGCCTTTCTTGTGAAACCAAACCATCAATATCGTGTATCAT
322 CTTTACAAAAATTGGTGG-AAAAATGCCTTTCTTGCGAAACCAAACCATCAATATCATGTATCCT
* * * **
35952 TATGAGAAGACTATGTTTATGG-GCCTTAATCTTGAAAAGTATAGGGATTAGTATGACTATTACC
386 AATGAGAAGACTATGTTTATGGTGCC-TAATCTTGAAAAGAATGGGGATTAGTATGACTATTAAT
* *
36016 GTTTGTCTTATTTGATAGACAAACT
450 GTTTGTCTTATTTAAGAGACAAACT
* *
36041 TTGATTCGATCAAAAACCAAGGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
1 TTGATTCGATCAAAAA-CATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * **
36106 ATCCTAACGAAGGGAATATGTTTTTGGTACCTAATCTTTTAAGGAATGGTGACAATTACGAGAAT
65 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGACTGTTACGAGAAT
* * * * * * *
36171 CGATTCTTCTCTTATTTTAGGGATAAACTTTGATTTTAATTAAAATAAGGTAAAGAAAATATTTC
130 CAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTTC
* * *
36236 CATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGTGCCTAATC
195 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
*
36301 ACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
260 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * *
36366 CACAAAAGTTGGTGGAAAAGATGCCTTCCTTGTGAAACCAAACCATCAATATCATGTATCCTAAT
325 TACAAAAATTGGTGGAAAA-ATGCCTTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAAT
* * *
36431 GAGAAAATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACT-TTAATGTTT
389 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTT
*
36495 GTCTTATTGCAA-AGACAAACT
454 GTCTTATT-TAAGAGACAAACT
* * * **
36516 TTGATTCGATCAAAAACA-GTGAAAAAAAAGCTTTTCTTGCGACACTATAGCATCAATGTCAACT
1 TTGATTCGATCAAAAACATG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * **
36580 ATCCTAAAGAAGGGAAAATGTTTTTGGTTCCCAATCTTTTTAAGAATGGTTACTGTTGTGAGAAT
65 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGACTGTTACGAGAAT
* * * * *
36645 CGAGGCTTGTCTTAATGAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGTTTTC
130 CAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTTC
* * * * * *
36710 TATGCAAAAGAAAATCATCAAAATCATTTATCCTGATGAGGGGAATGTGTTTATGGTGCCAAATC
195 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
36775 ACAAAATGAATGAAGATCATTAC-AAAATCCGTGTTTGTCTCATTTGAGGCATGAACATAGACTT
260 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * *
36839 TACAAAAATTGGTAGGAAAAGA-GCCTTTCTTGC-AATGCCAAAGCGTCAATATGATGTATCGTA
325 TACAAAAATTGGT-GGAAAA-ATGCCTTTCTTGCGAA-ACCAAACCATCAATATCATGTATCCTA
* * * * *
36902 AAGAGAAGACTATGCTTATGGTGCATAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGT
387 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGT
*
36967 TTGTCTTATTTAAGAGACAAACA
452 TTGTCTTATTTAAGAGACAAACT
* * * *
36990 TTGATTCGATCAAAAACAGTGGAATGAAAAGCTTTTCTTGCGACACCAAAGGATCCATGTTATGT
1 TTGATTCGATCAAAAACA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * *
37055 AT-CTAATGACGGGATTGTGTTTTTGGTTCCCAATCTTTTAAATAATGGGGAC-GAATACGAGAA
65 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGACTG-TTACGAGAA
* * **
37118 TCAATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTT
129 TCAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTT
* * *
37183 CCATGCATAAGAAAATTATCAATATCA-TTATCCTAATGTGGAGAATGTGTTTATAGTGCCTAAT
194 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * * *
37247 CACATAATGAATAAAGATCATTACTAGAACCCATATTTGTCTCATTTGAAGCATGAACATAGACT
259 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * **
37312 TTATAAAAATTAGTGCGAAAAAAGCCTTTTTTGCGAAACCAAGGCATCAATATCATGTATCCCT-
324 TTACAAAAATTGGTG-GAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATCATGTAT-CCTA
*** * *
37376 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGTATTAGTATGACTATTATTG-
387 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGT
* * *
37440 TTATCTTATTTAAGAGATAATCT
452 TTGTCTTATTTAAGAGACAAACT
* * * * * * * *
37463 TTGATTCAATCAAAAACCGTGAAAAGAAAAGCTTTTCCTACAACACTAGAGCATCAATGTCATGT
1 TTGATTCGATCAAAAA-CATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * *
37528 ATCCTAATGAAGGGACTATGTTTTTTGTTCCCAATCTTTTAAGGAATGGTGACTGTTATGAGAAT
65 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGACTGTTACGAGAAT
** * * * * *
37593 TGATGCTAGTTTTTTTTAAGGGATAAACTTTGATTTAAATTAAAAAAGGGCAAAGAAAAGATTTC
130 CAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTTC
* *
37658 CATGCAGAAA-AAAATCATCAATATCATTTACCCTAA-GAAGGAGAATATGTTTATAGTGCCTAA
195 CATGCA-AAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAA
* * * * *
37721 TCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTAATTTGAGCCACGGACTTACAC
258 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* ** * * * *
37786 TTTACAAAAATTGGTGGTAAAAAGGGTTTTCTTGCGAAGCTAATCCATTAATATCGA-GTAAT-C
323 TTTACAAAAATTGGTGG-AAAAATGCCTTTCTTGCGAAACCAAACCATCAATATC-ATGT-ATCC
* * *
37849 TAATGAGAAGACTATATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTATT
385 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAAT
* * *
37914 GTTTGTCCTATTTAAAAGACAAATT
450 GTTTGTCTTATTTAAGAGACAAACT
* * * * * **
37939 TTGATTAGATC-AAAACAGGTGCACAGAAAAGCTTTTCTTGCAACACCAAGGCATCAATAACATG
1 TTGATTCGATCAAAAACA--TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * **
38003 TATCCTAATAAAGGGAAAATGTTTTTGGTTCCCAAT-TTGTTAAAGAATGGTGATTGCTATAAGA
64 TATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTT-TTAAAGAATGGTGACTGTTACGAGA
* * * *
38067 ATCAATCCATGT-TTGATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAATAATAGAT
128 ATCAATGCTTGTCTT-ATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGAT
* * *
38131 TTCCAAGCAAAAGAAAATCATAAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
192 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * ** * *
38196 ATCACGAAATGAATGAAGATCATTACTGGAACCCATGTTTGTCTTGTTCGAGGTACGAACTTAGA
257 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* ** * * * *
38261 CTTTTCAAAAATTCTTGGGAAAAAAGCCTTTCTTGCGAAACCAAATCATCAATATGATGTATCTT
322 CTTTACAAAAATTGGT-GGAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATCATGTATCCT
* * * * * *
38326 AAGGAGAAGACTATGTTTATGGTGACTAATGGTGGAAAAGAATGGGGATTAGTATGAGTATTCAT
386 AATGAGAAGACTATGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGACTATTAAT
* *
38391 GTTTGTCTTAATTAAGAGGCAAACT
450 GTTTGTCTTATTTAAGAGACAAACT
* * * *** * *
38416 CTGGTTCTATCAAATATGGTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGT
1 TTGATTCGATCAAA-AACATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * ** **
38481 ATCATAATAAAGGGAATGTGTTTTTGGTTCTTAATCTTGAAAAGAATGGAT-ACTGTTACGAGAA
65 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGG-TGACTGTTACGAGAA
* * * * *
38545 TCAATTCTTGTCTTATTTAAGGGATGAACTTTGATTTCAAGTAAAATAGGGCAAACAAAAGATTT
129 TCAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTT
** *
38610 TAATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
194 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
38675 CACAAAATGAGTGAAGATCATT-CATAGAACCCACGTTTATCTCATTTGAGGCACGAACTTAGAC
259 CACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * ** * *
38739 TTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCAAAAGAAAAACATCAATATCGTGTATCCTAA
323 TTTACAAAAATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAA
*
38804 TGAAAAGACTATGTTTATGG
388 TGAGAAGACTATGTTTATGG
38824 CCCCAATCAT
Statistics
Matches: 2339, Mismatches: 397, Indels: 94
0.83 0.14 0.03
Matches are distributed among these distances:
472 2 0.00
473 262 0.11
474 671 0.29
475 287 0.12
476 776 0.33
477 333 0.14
478 7 0.00
479 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
TTGATTCGATCAAAAACATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGTGACTGTTACGAGAATC
AATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGA
GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGT
CTTATTTAAGAGACAAACT
Found at i:40155 original size:476 final size:477
Alignment explanation
Indices: 39207--41319 Score: 2262
Period size: 475 Copynumber: 4.4 Consensus size: 477
39197 AGGATGAACA
* * ** *
39207 TTGATTCTATAAAAAACGATGGAAAGAAAAGC-TTTCTTTGAAACACCAAAGCATCAATGTTATG
1 TTGATTCGATCAAAAACGATGGAAAGAAAAGCTTTTC-TTGCGACACCAAAGCATCAATGTCATG
* * * * * * ** *
39271 CATTCTAACGAAGAGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATTGAGACTATTACGAGAA
65 TATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTACGAGAA
* * * *
39336 TCGATGCTTGTCTTATTTAAGGGATGAACTTTTATTT-TATGAAAAATAGGGCAAAGAAAAGATT
130 TCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTCAATGAAAATTAGGGCAAAGAAAAGATT
* * * * * * **
39400 TCCATGTAAAAGAAAATCATCAGTATCATTTACCCTATTGA-GAGAATGTGTTTATAATGCCGGA
195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAA
* * * * *
39464 TCACAAAATGAATTAAGATCATTACTGGAATCCTTGTTTGTCTCATTT-AGAGCA-TACACTTAG
260 TCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAG-GCACGA-ACTTAG
* * * * *
39527 ACTTTACAAAAATTGCTGGTACAAATGCCTTTCTTGTGAAACCAAA-CCATCAATATCGTGTATC
323 ACTTTACAAAAGTTGGTGGTA-AAAAGCCTTTCTTGTGAAA-CAAAGGCATCAATATCATGTATC
* * * * *
39591 ATTATGAGAAGACTATGTTTATGG-GCCTTAATCTTGAAAAGTATAGGGATTAGTATGACTATTA
386 CTAATGAGAAGACTATGTTTATGGTGCC-TAATCGTGAAAAGAATGGGGATTAGTATGACTATTA
* * *
39655 CTGTTTGTCTTATTT-GATAGACAAACT
450 ATGTTTGTCTTATTTAAAGAGACAAACT
* **
39682 TTGATTCGATCAAAAACCATGGAAAGAAATTCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
1 TTGATTCGATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * *
39747 ATCCTAACGAAGGGAATATGTTTTTGGTTCCTAATCTTTTAAGGAATGGTGACAATTGCGAGAAT
66 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTACGAGAAT
* * * * * *
39812 CGATTCTTCTCTTTTTTAAGGGATAAACTTTGATTTCAATTAAAATTA-GGTAAAGAAAATATTT
131 CGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTCAATGAAAATTAGGGCAAAGAAAAGATTT
* *
39876 CCATCCAAAAGAAAATCATCAATATCATTTATTCTAATGAGGAGAATATGTTTATAGTGCCTAAT
196 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAAT
* * *
39941 AACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
261 CACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * ** * *
40006 TTACAAAAGTTGGTGTTAAAGAAACCCTTATTGCAAAATCAAAGG-GTCAATATAATGTATCCTA
326 TTACAAAAGTTGGTGGTAAA-AAGCCTTTCTTGTGAAA-CAAAGGCATCAATATCATGTATCCTA
* * * *
40070 ATGGGATGACTATGTTTATGGTGCCTAAGCGTGAAAAGAATGGGGATTTGTATGACTATTAATGT
389 ATGAGAAGACTATGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGTATGACTATTAATGT
40135 TTGTCTT-TTTAAAGAGACAAACT
454 TTGTCTTATTTAAAGAGACAAACT
* *
40158 TTGATT-GAATAAAAAACGGA-GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCAT
1 TTGATTCG-ATCAAAAAC-GATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * *
40221 GTAACCTAATGAAGGGAATGTGTTTTTGGTTCCTAATTTTTTAAAAAATGGAGACTGTTACGAGA
64 GTATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTACGAGA
* * * * * *
40286 ATCAATTCTTG-CATTGTTTAAAGGATGAACTTTGATTTTC-A-GAAAAATAGGGTAAAGAAAAG
129 ATCGATGCTTGTC-TTTTTTAAGGGATGAACTTTGA-TTTCAATGAAAATTAGGGCAAAGAAAAG
* * * * *
40348 CTTTCTATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAAT-TATTTATAGTGCC
192 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
* * * * * *
40412 TAATCACATAATGTATGAAGATCATT-TTCGGAACCCATGTTTGTCTTATTTGAGGCACAAACTT
257 TAATCACAAAATGAATGAAGATCATTACT-AGAACCCATGTTTGTCTCATTTGAGGCACGAACTT
* * ** ** * *
40476 ATACTTTA-TAGCGATTGGTGCGCGAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGCA
321 AGACTTTACAAAAG-TTGGTG-GTAAAAAGCCTTTCTTGTGAAACAAAGGCATCAATATCATGTA
* *
40540 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGACTATT
384 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGTATGACTATT
* * * * *
40605 CATGTTTGTCTTATAT-ATGACACAAAGT
449 AATGTTTGTCTTATTTAAAGAGACAAACT
* * * * * * * * *
40633 TTGAGTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTACGAAACCAAAACATCAATGTCAAGT
1 TTGATTCGATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * ** *
40698 ATCCTAATAAAGGGAATCTATTTTTTGTT-CCAATCTTGAAAAGTATGGAGACTATTACGAGAAT
66 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTACGAGAAT
** * * * * * *
40762 TAATGATTGTCGTATTTTAA-GGAGGAACATTGATTTCAAGGAAAA-TAAGGCAAAGAAAAGATT
131 CGATGCTTGTC-TTTTTTAAGGGATGAACTTTGATTTCAATGAAAATTAGGGCAAAGAAAAGATT
* * * *
40825 TTCATGCAAAAGAAAATCTTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGCGCCTAA
195 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAA
* * * *
40890 TCACATAATGAATGAAGATCATTACTAGAACCCTTGTTTGGCTCATTTGAGGCATGAACTTAGAC
260 TCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * * * * * * *
40955 TTTATAGAATTTGGTGGGAATAAAGCTTTTCTTATGAAACCAAGGCATCAATGTCGTGTATCCTT
325 TTTACAAAAGTTGGTGGTAA-AAAGCCTTTCTTGTGAAACAAAGGCATCAATATCATGTATCCTA
* * * * * *
41020 GTGAAAAAACTATGTTTATGGTGCCTAATCCG-AAAAAGAATGGGGATTAGTATGACTCTTATTG
389 ATGAGAAGACTATGTTTATGGTGCCTAAT-CGTGAAAAGAATGGGGATTAGTATGACTATTAATG
41084 TTTGTCTTATTTAAA-AGACAAACT
453 TTTGTCTTATTTAAAGAGACAAACT
* *
41108 TTAATTCGATCAAAAACGATGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGT
1 TTGATTCGATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * *
41173 ATCCTAATGAAGGGAAAATGTTTTTGGTTCCCAATCTTTTAAAAAATGGTGACTATTATGAGAAT
66 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTACGAGAAT
* * * *** *
41238 CGATGCTTGTCTTCTTTAAGGAATAAACTTTGATTTTTTTTTTAAAA-TAGGGCAAAGAAAAGAT
131 CGATGCTTGTCTTTTTTAAGGGATGAACTTTGA--TTTCAATGAAAATTAGGGCAAAGAAAAGAT
*
41302 TTCCAAGCAAAAGAAAAT
194 TTCCATGCAAAAGAAAAT
41320 GCACATCATT
Statistics
Matches: 1351, Mismatches: 253, Indels: 65
0.81 0.15 0.04
Matches are distributed among these distances:
473 4 0.00
474 114 0.08
475 735 0.54
476 448 0.33
477 11 0.01
478 39 0.03
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (477 bp):
TTGATTCGATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTACGAGAAT
CGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTCAATGAAAATTAGGGCAAAGAAAAGATTT
CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
TTACAAAAGTTGGTGGTAAAAAGCCTTTCTTGTGAAACAAAGGCATCAATATCATGTATCCTAAT
GAGAAGACTATGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGTATGACTATTAATGTTT
GTCTTATTTAAAGAGACAAACT
Found at i:41685 original size:416 final size:415
Alignment explanation
Indices: 40907--41733 Score: 1011
Period size: 416 Copynumber: 2.0 Consensus size: 415
40897 ATGAATGAAG
* * * * * *
40907 ATCATTACTAGAACCCTTGTTTGGCTCATTTGAGGCATGAACTTAGACTTTATAGAATTTGGTGG
1 ATCATTACTAGAACCCATGTTTGGCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* ** * * **
40972 GAATAAAGCTTTTCTTATGAAACCAAGGCATCAATGTCGTGTATCCTTGTGAAAAAACTATGTTT
66 GAATAAAGCCTTTCTTATGAAACCAAACCATCAATATCATGTATCCTAATGAAAAAACTATGTTT
* * ** * *
41037 ATGGTGCCTAATCCGAAAAAGAATGGGGATTAGTATGACTCTTATTGTTTGTCTTATTTAAAAGA
131 ATCGTGCCTAATCCGAAAAAGAATGAGGATTAGTATGACTAGTAATGTTTATCTTATTTAAAAGA
*
41102 CAAACTTTAATTCGATCAAAAACGATGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATG
196 CAAACTTCAATTCGATCAAAAACGATGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATG
* * * *
41167 TCATGTATCCTAATGAAGGGAAAATGTTTTTGGTTCCCAATCTTTTAAAAAATGGTGACTATTAT
261 TCACGTATCCTAATGAAAGGAAAATGTTTTTGGTTCCCAATCTTTTAAAAAATGGAGACTATTAC
* * ****
41232 GAGAATCGATGCTTGTCTTCTTTAAGGAATAAACTTTGATTTTTTTTTTAAAATAGGGCAAAGAA
326 AAGAATCGATGCTTGTCTTATTTAAGGAATAAACTTTGA--TTTTAAGAAAAATAGGGCAAAGAA
41297 AAGATTTCCA-AGCAAAAGAAAATGCAC
389 AAGATTTCCACAG-AAAAGAAAATGCAC
* * *
41324 ATCATTACTAGAATCCATGTTTGTCTCCTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAACCCATGTTTGGCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
41389 TAGA-AATGCCTTTCTTGTGAAACCAAACCATCAATATCATGTATCCTAAT-AAGAAAACT-TGT
66 GA-ATAAAGCCTTTCTTATGAAACCAAACCATCAATATCATGTATCCTAATGAA-AAAACTATGT
* * * * * *
41451 TTATCGTGGCTAATCTTG-AAAAGAATGAGGATTTGTATGACTAGTAATGTTTATGTTGTTTAAG
129 TTATCGTGCCTAATC-CGAAAAAGAATGAGGATTAGTATGACTAGTAATGTTTATCTTATTTAAA
* * *
41515 AGACAAACTTCGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
193 AGACAAACTTCAATTCGATCAAAAACGATGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCA
* * ** * * *
41580 GTGTCGCGTATCCTAAT-AAAGG-AAATGTATTTTTGGTTTGCAATCTTTTAAAGAGTGGAGGCT
258 ATGTCACGTATCCTAATGAAAGGAAAATG--TTTTTGGTTCCCAATCTTTTAAAAAATGGAGACT
* * * ** *
41643 GTTACAAGAATTGATTCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGAAAAATAGGGCAAA
321 ATTACAAGAATCGATGCTTGTCTTATTTAAGGAATAAACTTTGATTTTAAGAAAAATAGGGCAAA
41708 GAAAAGATTTCCACAGAAAAGAAAAT
386 GAAAAGATTTCCACAGAAAAGAAAAT
41734 CATCAATATC
Statistics
Matches: 346, Mismatches: 58, Indels: 15
0.83 0.14 0.04
Matches are distributed among these distances:
414 45 0.13
415 6 0.02
416 193 0.56
417 101 0.29
418 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (415 bp):
ATCATTACTAGAACCCATGTTTGGCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAATAAAGCCTTTCTTATGAAACCAAACCATCAATATCATGTATCCTAATGAAAAAACTATGTTT
ATCGTGCCTAATCCGAAAAAGAATGAGGATTAGTATGACTAGTAATGTTTATCTTATTTAAAAGA
CAAACTTCAATTCGATCAAAAACGATGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATG
TCACGTATCCTAATGAAAGGAAAATGTTTTTGGTTCCCAATCTTTTAAAAAATGGAGACTATTAC
AAGAATCGATGCTTGTCTTATTTAAGGAATAAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAA
GATTTCCACAGAAAAGAAAATGCAC
Found at i:42603 original size:476 final size:475
Alignment explanation
Indices: 41324--45258 Score: 4407
Period size: 475 Copynumber: 8.3 Consensus size: 475
41314 GAAAATGCAC
* * *
41324 ATCATTACTAGAATCCATGTTTGTCTCCTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * *
41389 TAGAAATGCCTTTCTTGTGAAACCAAACCATCAATATCATGTATCCTAATAAGAAAACT-TGTTT
66 GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * * * * *
41453 ATCGTGGCTAATCTTGAAAAGAATGAGGATTTGTATGACTAGTAATGTTTATGTTGTTTAAGAGA
131 ATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAGA
* * *
41518 CAAACTTCGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTG
196 CAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
** * * * ** * * *
41583 TCGCGTATCCTAATAAAGGAAATGTATTTTTGGTTTGCAATCTTTTAAAGAGTGGAGGCTGTTAC
261 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTAC
* * * * **
41648 AAGAATTGATTCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAA
326 AAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAA
* * *
41713 GATTTCCACAG-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAACGTGTTTATAGTG
391 GATTTCCA-TGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
*
41777 CCTAGTCACAAAATGAATGAAG
454 CCTAATCACAAAATGAATGAAG
* * * * * * * * * *
41799 ATCATTACTGGAACCCAT-CTTATCTCATTAGAGGCATGAACTTAGACTTTGCAGAATTTAGTGT
1 ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * *
41863 GAAAAAAACCTTTCTTGTGAAACCAAGGCAACAATATCATGTA-CCATTATGAGAATACTATGTT
66 GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAATGAGAAGACTATGTT
* * *
41927 TATGG-GTCCTAATCTTGAAAAGTATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTGAGA
130 TATGGTG-CCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGA
* * * * *
41991 GA-AAACTTTGATTCGATCATAAA-GCATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGAATCA
194 GACAAACTTTGATTCAATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * ** *
42054 ATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTTAGTGAATGGTGACTAT
258 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTAT
* * *
42119 TACAAGAATCGATTCTTCTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGTAAAGA
323 TACAAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGA
* * *
42184 AAAGATTTCCATGCAAAAAAAATTTATCAATATCATTTATCCTAATGCGGAGAATATGTTTATAG
388 AAAGATTTCCATGCAAAAAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
*
42249 TACCTAATCACAAAATGAATGAAG
452 TGCCTAATCACAAAATGAATGAAG
* * ** * * * *
42273 GTTATTACTAGAGTCCATGTTTGCCTCATTTGAGGCATGAATTTAGACTTTACAAAAATTGGCGG
1 ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
42338 GAAAAAAG-CTCTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTT
66 GAAAAAAGCCT-TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
* * * * * * *
42402 TATGGTGCCTAACCATAAAAAAAATGGGGATTTGTATGGCTATTAATGTTTGTCGTT-TTTAGGT
130 TATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTC-TTATTTAAGA
** *
42466 GACAAACTTTGATTCAATCAAAAGTGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAA
194 GACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
42531 TGTCATGTATCCTAATGAAGGGCATGTGTTTTTGGTTCCTAATCTTTTAAAGAATGGAGACTATT
259 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATT
* * * ** *
42596 ACAAGAATCAATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAAATAGGGTAAAGA
324 ACAAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAA-TTAAAATAGGGCAAAGA
* * * *
42661 GAAGATTTACATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGAAT-CGTTTATAG
388 AAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
42725 TGACTAATGACATAATGAGTGAAG
452 TGCCTAATCACAAAATGAATGAAG
** * * * * * * * *
42749 ATC-TTTGTCGGAAACCATATTTGTATCATTTGAGGCACAAACTTATACTTTATAAAAAGTGGT-
1 ATCATTACT-AGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * **
42812 GCAGAAAAAGCCTTTCTTGCGAAACCAAGGAATCAATATCATGTATTCTAACAAGAAGACTATGT
65 GGA-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT
* * * * *
42877 TTATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTATTACTATTGATTTTTGTCTTATATAAGA
129 TTATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGA
** * * *
42942 CG-CAAACTTTGATT-ATATCAAAAATAGTGGAAGGAAAAGCTTTTCTTGTGACA-CAAAACATC
194 -GACAAACTTTGATTCA-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * **
43004 AATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTCGTT-CCAATATTGAAAAGAATGGAGACTA
257 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTA
* * * * * * ** * *
43068 TTACCAGAAT-TAGTGATTGTCTAATTTTAGGGA-AGAACTTTGATTTCAAGGAAAATAAGGCGA
322 TTACAAGAATCGA-TGCTTGTCTTATTTAAGGGATA-AACTTTGATTTTAATTAAAATAGGGCAA
*
43131 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGTGGAGAATGTGTTTA
385 AGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
43196 TAGTGCCTAATCACATAATGAATAAAG
449 TAGTGCCTAATCACAAAATGAATGAAG
* * * *
43223 ATCATTACTAGAACCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTTGCAAAAATTAGTGC
1 ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
43288 GAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
66 GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* *** * * *
43353 ATGGTGCCTAATCTTGAAAAGAAAATGTATTAGTATGACTATTATTG-TTATCTTATTTAAGAGA
131 ATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAGA
* * * * * * ** *
43417 TAATCTTCGATTCAATCAAAAACCGTGAAAAGAAAAGCTTTTCCTATGACACCAGAGCATCAATG
196 CAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
43482 TCATGTATCCTAATGAAGGGACTATATTTTTTGTTCCCAATCTTTTAAAGAATGGTGACTGTTAT
261 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTAC
* * * * *
43547 AAGAATTGATGCTAGTTTTATTTAAGGGATAAACTTTGATTTAAATTAAAAAAGGGCAAAGAAAA
326 AAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAA
* * * *
43612 AATTTCCATGCAGAAAAAAATCATCAATATCATTTACCCTAAGGAGGAGAATATGTTTATAGTGC
391 GATTTCCATGCA-AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
43677 CTAATCACAAAATGAATGAAG
455 CTAATCACAAAATGAATGAAG
* * * * *
43698 ATCATTACTAGAACCCATGTTTGTCTCATTTGAAGCACGGACTTAGACTTTGCAAAAATTAGTGC
1 ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
43763 GAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
66 GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* *** * * *
43828 ATGGTGCCTAATCTTGAAAAGAAAATGTATTAGTATGACTATTATTG-TTATCTTATTTAAGAGA
131 ATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAGA
* * * * * * *
43892 TAATCTTTGATTCAATCAAAAACCGTGAAAAGAAAAGCTTTTCCTACGACACCAGAGCATCAATG
196 CAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * *
43957 TCATGTATCCTAATGAAGGGACTATGTTTTTTGTTCCCAATCTTTTAAAGAATGGTGACTATTAT
261 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTAC
* * * * *
44022 AAGAATTGATGCTAGTTTTATTTAAGGGATAAACTTTGATTTAAATTAAAAAAGGGCAAAGAAAA
326 AAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAA
* * *
44087 GATTTCCATGCAGAAAAAAATCATCAATATCATTTACCCTAAGGAGGAGAATATGTTTATAGTGC
391 GATTTCCATGCA-AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
44152 CTAATCACAAAATGAATGAAG
455 CTAATCACAAAATGAATGAAG
* * *
44173 ATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * ** * * ** * * *
44238 TAAAAAGGGTTTTCTTGCGAAGCTAATCCATTAATATCGTGTAAT-CTAATGAGAAGACTATATT
66 GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGACTATGTT
* * * *
44302 TATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTATTGTTTGTCCTATTTAAGAG
130 TATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAG
* * * * * * *
44367 ACAAATTTTGATTCGATC-AAAACAGGTGCACAGAAAAGCTTTTCCTGCAACACCAAGGCATCAA
195 ACAAACTTTGATTCAATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
** * ** * * **
44431 TAACATGTATCCTAATAAAGGGAAAATGTTTTTGGTTCCCAAT-TTGTTAAAGAATGGTGATTGC
259 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-TTAAAGAATGGAGACTAT
** * * * *
44495 TATGAGAATCAATCCATGT-TTGATTTAAGGGATAAACTTTGACTTTAATTAAAATAGGGCAAAG
323 TACAAGAATCGATGCTTGTCTT-ATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAG
* * * *
44559 AATAGATTTCCATGCAAAAGAAAATCATAAATATCATTTATCCTAATGAGAAAAATGTGTTTATA
387 AAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
** * *
44624 GTGCCTAATCATGAATTGAGTGAAG
451 GTGCCTAATCACAAAATGAATGAAG
* * * * **
44649 ATCATTACTGGAACCCATGTTTGT-T-ATGTTCGAGGTACGAACTTGGACTTTTCAAAAATTCTT
1 ATCATTACTAGAACCCATGTTTGTCTCAT-TT-GAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * *
44712 GGGAAAAAAGCCTTTCTTGCGAAACCAAATCATCAATATGATGTATCTTAAGGAGAAGACTATGT
64 GGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT
* ** * * *
44777 TTATGGTGCCTAATGGTGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAG
129 TTATGGTGCCTAAT-CTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAG
* * * ** * * *
44842 AGGCAAACATTGGTTGTATCAAAAATGGTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCA
193 AGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *** ** **
44907 ATGTCATGTATCATAATAAAGGGAATGTGTTTTTGGTTTTTAATCTTGAAAAGAATGGAGACTGC
258 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTAT
* * ** * *
44972 TACGAGAATCAATGCTTGTCTTATTTAAGGGACGAACTTTGATTTCAAGTAAAATAGGGCAAAGA
323 TACAAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGA
** * * *
45037 AAAGATTTTAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATGG
388 AAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
*
45102 TGCCTAATCACAAAATGAGTGAAG
452 TGCCTAATCACAAAATGAATGAAG
* * * *
45126 ATCAAT-CATAGAATCCACGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
1 ATCATTAC-TAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * *
45190 GG-AAAATGCCTTTCTTGCGAAAGCAAAACATCAATATCGTGTATCCTAATGAAAAGACTATGTT
65 GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
45254 TATGG
130 TATGG
45259 CCCCAATCAT
Statistics
Matches: 2967, Mismatches: 443, Indels: 99
0.85 0.13 0.03
Matches are distributed among these distances:
472 5 0.00
473 120 0.04
474 605 0.20
475 1048 0.35
476 792 0.27
477 376 0.13
478 19 0.01
479 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
ATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTTTAAAGAATGGAGACTATTAC
AAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGCAAAGAAAA
GATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAG
Found at i:42633 original size:159 final size:159
Alignment explanation
Indices: 41866--45110 Score: 551
Period size: 159 Copynumber: 20.5 Consensus size: 159
41856 TTAGTGTGAA
* * * * * *
41866 AAAAACCTTTCTTGTGAAACCAAGGCAACAATATCATGTA-CCATTATG-A-GAATACTATGTTT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAATGAAGGGA-A-TATGTTT
* * * * * * ** ** * * *
41928 ATGGGTCCTAATCTTGAAAAGTATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTGAGAGA
63 ATGGTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGGA
* **
41993 -AAACTTTGATTCGATCATAAAG-CATGGAAAG
128 TAAACTTTGATTCAATCA-AAAGTGGTGGAAAG
* * * * * *
42024 AAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTG
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
* ** * * *
42089 GTTCCTAATCTTTTAGTGAATGGTGACTATTACAAGAATCGAT-TCTTCTCTTATTTAAGGGATA
66 GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGT-TTGTCTTATTTAAGGGATA
* * *
42153 AACTTTGATTTTAATTAAAA-TAGG-GTAAAG
130 AACTTTGA-TTCAATCAAAAGT-GGTGGAAAG
* * ** ** * *
42183 AAAAGA-TTTCCATGC-AAAAAAAATTTATCAATATCATTTATCCTAATG-CGGAGAATATGTTT
1 AAAA-ACTTTTCTTGCGAAACCAAA-GCATCAATATCATGTATCCTAATGAAGG-GAATATGTTT
* * ** * ** * * * * * * *
42245 ATAGTACCTAATC-ACAAAATGAATGAAGGTTATTACTAGAGTCCATGTTTGCCTCATTTGAGGC
63 ATGGTTCCTAATCTTTAAAA-GAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGG
* * * * *
42309 ATGAA-TTTAGACTT-TA-CAAAAATTGGCGGGAA-
127 ATAAACTTT-GA-TTCAATC-AAAAGTGGTGGAAAG
* * * * * *
42341 AAAAGCTCTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATG-AGAAGACTATGTTTAT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTAT
* * * * * * * ** * *
42405 GGTGCCTAACCATAAAAAAAATGGGGA-TTTGTA-TGGCTATTAATGTTTGTCGTT-TTT-AGGT
65 GGTTCCTAATCTTTAAAAGAATGGAGACTAT-TACAAG-AATCAATGTTTGTC-TTATTTAAGG-
*
42466 GACAAACTTTGATTCAATCAAAAGTGGTGGAAAG
126 GATAAACTTTGATTCAATCAAAAGTGGTGGAAAG
* * * * *
42500 AAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGCATGTGTTTTTG
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
* *
42565 GTTCCTAATCTTTTAAAGAATGGAGACTATTACAAGAATCAAT-TCTTGTCTTATTTAAGGGATG
66 GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGT-TTGTCTTATTTAAGGGATA
* ** * *
42629 AACTTTGATTTTAAGAAAAAATAGG-GTAAAG
130 AACTTTGA-TTCAATCAAAAGT-GGTGGAAAG
* * * * ** * * * *
42660 AGAAGA-TTTACATGCAAAAAAAAATCATCAATATCATTTATCCTAATG-AGAAGAAT-CGTTTA
1 A-AAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTA
* ** * * * * * * * * * * * *
42722 TAGTGACTAATGAC-AT-AATGAGTGAAGATCT-TTGTC-GGAAACCATATTTGTATCATTTGAG
64 TGGTTCCTAAT--CTTTAAAAGAATGGAGA-CTATT-ACAAGAATCAATGTTTGTCTTATTTAAG
* * * * *
42783 GCACAAACTTAT-ACTT-TATAAAAAGTGGT-G-CAG
125 GGATAAACTT-TGA-TTCAATCAAAAGTGGTGGAAAG
* * * * * * *
42816 AAAAAGCCTTTCTTGCGAAACCAAGGAATCAATATCATGTATTCTAA-CAAGAAGACTATGTTTA
1 AAAAA-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTA
* * * * ** ** ** * * *
42880 TGGTGCCTAATCTTAAAAAGAATAGG-GATTAGTATTACTATTGATTTTTGTCTTATATAAGACG
64 TGGTTCCTAATCTTTAAAAGAAT-GGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAG-GG
* * * *
42944 -CAAACTTTGATT-ATATCAAAAATAGTGGAAGG
127 ATAAACTTTGATTCA-ATCAAAAGTGGTGGAAAG
* * * * * * * * *
42976 AAAAGCTTTTCTTGTGACA-CAAAACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTC
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
* * * * * * * *
43040 GTTCC-AATATTGAAAAGAATGGAGACTATTACCAGAATTAGTGATTGTCTAATTTTAGGGA-AG
66 GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGGATA-
** *
43103 AACTTTGATTTCAAGGAAAA-TAAGG-CG-AAG
130 AACTTTGA-TTCAATCAAAAGT--GGTGGAAAG
* * * ** * * * *
43133 AAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-TGGAGAATGTGTTTA
1 AAAA-ACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATATGTTTA
* * ** * ** * * * *
43196 TAGTGCCTAATC-ACATAATGAATAAAGA-TCATTACTAGAACCCATGTTTGTCTCATTTGAA-G
64 TGGTTCCTAATCTTTA-AAAGAATGGAGACT-ATTACAAGAATCAATGTTTGTCTTATTT-AAGG
* ** * * *
43258 CACGAACTTAGACTT---TGCAAAAATTAGTGCG-AA-
126 GATAAACTTTGA-TTCAAT-C-AAAAGTGGTG-GAAAG
* * * * * * *
43291 AAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTTATG-AGAAGACTATGTTTAT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTAT
* * * * * * * * *
43355 GGTGCCTAATCTTGAAAAGAA---A-ATGTATTAGTATGACTATTATTG-TTATCTTATTTAAGA
65 GGTTCCTAATCTTTAAAAGAATGGAGA-CTATTA-CAAGA--ATCAATGTTTGTCTTATTTAAGG
* * *** *
43415 GATAATCTTCGATTCAATCAAAAACCGTGAAAAG
126 GATAAACTTTGATTCAATCAAAAGTGGTGGAAAG
* * ** * * * * * * *
43449 AAAAGCTTTTCCTATGACACCAGAGCATCAATGTCATGTATCCTAATGAAGGGACTATATTTTTT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
* * * * * ** * * *
43514 GTTCCCAATCTTTTAAAGAATGGTGACTGTTATAAGAATTGATGCTAGTTTTATTTAAGGGATAA
66 GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGGATAA
* * ** *
43579 ACTTTGATTTAAATTAAAAAAGG-GCAAAG
131 ACTTTGA-TTCAATCAAAAGTGGTGGAAAG
* * * * * * * *
43608 AAAAAATTTCCATGCAGAAA-AAAATCATCAATATCATTTACCCTAA-GGAGGAGAATATGTTTA
1 AAAAACTTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATATGTTTA
* * ** * * * * *
43671 TAGTGCCTAATC-ACAAAATGAATGAAGA-TCATTACTAGAACCCATGTTTGTCTCATTTGAAGC
64 TGGTTCCTAATCTTTAAAA-GAATGGAGACT-ATTACAAGAATCAATGTTTGTCTTATTT-AAG-
* * *
43734 ACGGACTTAGACTTTG---C-A--AAAATTAGTGCG-AA-
125 --GGA--TAAACTTTGATTCAATCAAAAGTGGTG-GAAAG
* * * * * * *
43766 AAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTTATG-AGAAGACTATGTTTAT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTAT
* * * * * * * * *
43830 GGTGCCTAATCTTGAAAAGAA---A-ATGTATTAGTATGACTATTATTG-TTATCTTATTTAAGA
65 GGTTCCTAATCTTTAAAAGAATGGAGA-CTATTA-CAAGA--ATCAATGTTTGTCTTATTTAAGG
* *** *
43890 GATAATCTTTGATTCAATCAAAAACCGTGAAAAG
126 GATAAACTTTGATTCAATCAAAAGTGGTGGAAAG
* * * * * * * * *
43924 AAAAGCTTTTCCTACGACACCAGAGCATCAATGTCATGTATCCTAATGAAGGGACTATGTTTTTT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
* * * * ** * * *
43989 GTTCCCAATCTTTTAAAGAATGGTGACTATTATAAGAATTGATGCTAGTTTTATTTAAGGGATAA
66 GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGGATAA
* * ** *
44054 ACTTTGATTTAAATTAAAAAAGG-GCAAAG
131 ACTTTGA-TTCAATCAAAAGTGGTGGAAAG
* * * * * * *
44083 AAAAGA-TTTCCATGCAGAAA-AAAATCATCAATATCATTTACCCTAA-GGAGGAGAATATGTTT
1 AAAA-ACTTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATATGTTT
* * ** * * * * *
44145 ATAGTGCCTAATC-ACAAAATGAATGAAGA-TCATTACTAGAATCTATGTTTGTCTCATTTGAGG
63 ATGGTTCCTAATCTTTAAAA-GAATGGAGACT-ATTACAAGAATCAATGTTTGTCTTATTTAAGG
* *** * * * *
44208 CACGGACTTAGACTT-TA-CAAAAATTGGTGGTAA-
126 GATAAACTTTGA-TTCAATC-AAAAGTGGTGGAAAG
*** * * ** * * * * *
44241 AAAGGGTTTTCTTGCGAAGCTAATCCATTAATATCGTGTAAT-CTAATG-AGAAGACTATATTTA
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAG-GGAATATGTTTA
* * * ** * * * * *
44304 TGGTGCCTAATCTTGAAAAGAATGGGGA-T-TTGTATGACTATTATTGTTTGTCCTATTTAAGAG
64 TGGTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGA--ATCAATGTTTGTCTTATTTAAGGG
* * * ** * *
44367 ACAAATTTTGATTCGATCAAAACAGGTGCACAG
127 ATAAACTTTGATTCAATCAAAAGTGGTGGAAAG
* * * * * * *
44400 AAAAGCTTTTCCTGC-AACACCAAGGCATCAATAACATGTATCCTAATAAAGGGAAAATGTTTTT
1 AAAAACTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTAT
* * * * ** ** ***
44464 GGTTCCCAAT-TTGTTAAAGAATGGTGATTGCTATGAGAATCAATCCATGT-TTGATTTAAGGGA
65 GGTTCCTAATCTT-TAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTT-ATTTAAGGGA
* * *
44527 TAAACTTTGACTTTAATTAAAA-TAGG-GCAAAG
128 TAAACTTTGA-TTCAATCAAAAGT-GGTGGAAAG
* * * * ** * * * ** *
44559 AATAGA-TTTCCATGCAAAAGAAAATCATAAATATCATTTATCCTAATG-AGAAAAATGTGTTTA
1 AA-AAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTA
* * * * ** * * ** * * *
44622 TAGTGCCTAATCATGAATTGAGTGAAGA-TCATTACTGGAACCCATGTTTG--TTATGTTCGAGG
64 TGGTTCCTAATCTTTAAAAGAATGGAGACT-ATTACAAGAATCAATGTTTGTCTTAT-TT-AAGG
* ** * * * ** *
44684 TACGAACTTGGACTT--TTCAAAAATTCTTGGGAA-
126 GATAAACTTTGA-TTCAATC-AAAAGTGGTGGAAAG
* * * * * * * *
44717 AAAAGCCTTTCTTGCGAAACCAAATCATCAATATGATGTATCTTAA-GGAGAAGACTATGTTTAT
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATATGTTTAT
* * ** * * * ** * *
44781 GGTGCCTAATGGTGGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTAATTAAGAGG
65 GGTTCCTAAT-CTTTAAAAGAATGGAGACTATTACAAG-AATCAATGTTTGTCTTATTTAAG-GG
* * * ** *
44845 -CAAACATTGGTTGTATCAAAAATGGTGGAAAG
127 ATAAACTTTGATTCAATCAAAAGTGGTGGAAAG
* ** * * * * * *
44877 GAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATAATAAAGGGAATGTGTTTTTG
1 AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
** * ** * * **
44942 GTTTTTAATCTTGAAAAGAATGGAGACTGCTACGAGAATCAATGCTTGTCTTATTTAAGGGACGA
66 GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGGATAA
*
45007 ACTTTGATTTCAAGT-AAAA-TAGG-GCAAAG
131 ACTTTGA-TTCAA-TCAAAAGT-GGTGGAAAG
** * ** * * * * *
45036 AAAAGA-TTTTAATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATG-AGGAGAATGTGTTTA
1 AAAA-ACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATATGTTTA
*
45099 TGGTGCCTAATC
64 TGGTTCCTAATC
45111 ACAAAATGAG
Statistics
Matches: 2153, Mismatches: 740, Indels: 387
0.66 0.23 0.12
Matches are distributed among these distances:
151 7 0.00
153 2 0.00
154 3 0.00
155 14 0.01
156 25 0.01
157 170 0.08
158 805 0.37
159 882 0.41
160 207 0.10
161 25 0.01
162 2 0.00
163 3 0.00
165 8 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (159 bp):
AAAAACTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATATGTTTATG
GTTCCTAATCTTTAAAAGAATGGAGACTATTACAAGAATCAATGTTTGTCTTATTTAAGGGATAA
ACTTTGATTCAATCAAAAGTGGTGGAAAG
Found at i:43437 original size:158 final size:159
Alignment explanation
Indices: 43275--43985 Score: 407
Period size: 158 Copynumber: 4.5 Consensus size: 159
43265 TTAGACTTTG
*
43275 CAAAAATTAGTGCGAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTTATGA
1 CAAAAA-TAGTGCGAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTAATGA
43340 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGT-ATTAGTATGACTATTATTGTTAT
65 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGTCATTAGTATGACTATTATTGTTAT
*
43404 CTTATTTAAGAGATAATCTTCGA-TTCAAT
130 CTTATTTAAGAGATAATCTTTGACTTCAAT
** ** * * * * *
43433 CAAAAACCGTGAAAAGAAAAGCTTTTCCTATGACACC-AGAGCATCAATGTCATGTATCCTAATG
1 CAAAAATAGTGCGAA-AAAAGCCTTTCTTGTGAAACCAAG-GCATCAATATCATGTATCCTAATG
* * * * * * ** * * * **
43497 A-AGGGACTATATTTTTTGTTCCCAATCTTTTAAAG--AATGGTGACT-GTTATAAGAATTGA-T
64 AGA-AGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAAT-GTCATTAG-TATGACTATT-ATT
* * * * * *
43557 GCTAGTTTTATTTAAGGGATAAACTTTGATTTAAAT
125 GTTA-TCTTATTTAAGAGATAATCTTTGACTTCAAT
* * *** * * * ** * * *
43593 TAAAAA-AGGGC-AAAGAAAAAATTTCCATGCAGAAA-AAAATCATCAATATCATTTACCCTAAG
1 CAAAAATAGTGCGAAA-AAAGCCTTT-CTTG-TGAAACCAAGGCATCAATATCATGTATCCTAAT
* * * ** * *
43655 GAGGAGAATATGTTTATAGTGCCTAATC-ACAAAATGAATGAA-GATCATTACTA-GAACCCATG
63 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA-GAA--AATG-TCATTAGTATG-A-CTAT-
* * *
43717 T-TTG---TCTCATTTGAAGCACG--GA-CTTAGACTT---T
121 TATTGTTATCTTATTT-AAG-A-GATAATCTTTGACTTCAAT
*
43749 GCAAAAATTAGTGCGAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTTATG
1 -CAAAAA-TAGTGCGAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTAATG
43814 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGT-ATTAGTATGACTATTATTGTTA
64 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGTCATTAGTATGACTATTATTGTTA
43878 TCTTATTTAAGAGATAATCTTTGA-TTCAAT
129 TCTTATTTAAGAGATAATCTTTGACTTCAAT
** ** * * ** * *
43908 CAAAAACCGTGAAAAGAAAAGCTTTTCCTACGACACC-AGAGCATCAATGTCATGTATCCTAATG
1 CAAAAATAGTGCGAA-AAAAGCCTTTCTTGTGAAACCAAG-GCATCAATATCATGTATCCTAATG
*
43972 A-AGGGACTATGTTT
64 AGA-AGACTATGTTT
43986 TTTGTTCCCA
Statistics
Matches: 399, Mismatches: 105, Indels: 98
0.66 0.17 0.16
Matches are distributed among these distances:
153 1 0.00
154 7 0.02
155 8 0.02
156 14 0.04
157 42 0.11
158 200 0.50
159 91 0.23
160 21 0.05
161 1 0.00
162 7 0.02
163 6 0.02
164 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (159 bp):
CAAAAATAGTGCGAAAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCATGTATCCTAATGAG
AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGTCATTAGTATGACTATTATTGTTATC
TTATTTAAGAGATAATCTTTGACTTCAAT
Found at i:46814 original size:475 final size:473
Alignment explanation
Indices: 45882--49368 Score: 3795
Period size: 475 Copynumber: 7.4 Consensus size: 473
45872 TGAAGAGAAA
* * * * * ** *
45882 ATCATTATTGGAATCCTTGTTTGTCTCATTTAAAGCATAAACTTAGACTTTACAAAAATTGCTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* ** * * * * * * *
45947 TATAAATGCCTTTCTTGTGAAACCAAACCATCAATATCGTGTATCATTACGAGAAGACTACGTTT
66 GA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * *
46012 ATGG-GCCTTAATCTTGAAAAGTATAGGGATTAGTATGACTATTACTGTTTGTCTTATTTGATAG
130 ATGGTGCC-TAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAG
* * *
46076 ACAAACTTTGATTCGATCAAAAAC-CATGGAAAGAAATGA-TTTTCTTGCAACACCAAAGCATCA
194 ACAAACTTTGATTCGATCAAAAACGGA-GGAAAGAAA-AACTTTTCTTGCGACACCAAAGCATCA
* * * * *
46139 ATGTCATGTATCCTAACGAAGGGAATATGTTTTCGGTTCCTAATCTTTTAAGGAATGGTGACAAT
257 ATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTTAA-AAATGGAGACTAT
* * ** *
46204 T-CGAGAATCGATTCTTCTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAAGGTAAAGA
321 TACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGA
* ** *
46268 AAATATTTCCATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAT
386 AAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-TGTTTATAG
46333 TGCCTAATCACAAAATGAATGAAG
450 TGCCTAATCACAAAATGAATGAAG
* *
46357 ATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGT
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * ** *
46422 TAAAGAAACCCTTCTTGCAAAACCAAAGTGTCAATATAATGTATCCTAATGAGAAGACTATGTTT
66 GAAA-AAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * *
46487 ATGGTGCGTAAGCGTGAAAAGAATGGGGATTGGTATGACTATTAATGTTTGTCTT-TTTAAAGAG
130 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTT-AAGAG
** *
46551 ACAAACTTTGATTTAATAAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAT
194 ACAAACTTTGATTCGATCAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAT
* * *
46616 GTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCCTAATTTTTTTAAAAATGGAGACTATTA
259 GTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAA-TCTTTTAAAAATGGAGACTATTA
* * * *
46681 CGAGAATCAATTCTTGTCTTGTTTAAAGGATGAACTTTGATTTTCAGAAAAATAGGGTAAAGAAA
323 CGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAAA
* *
46746 AGATTTCTATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATTATTTATAGTGC
388 AGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATTGTTTATAGTGC
*
46811 CTAATCACATAATGAATGAAG
453 CTAATCACAAAATGAATGAAG
* * * * * * * **
46832 ATCATTTC-CGCAACCCATGTTTGTCTTATTTGAGGCACAAACTTATACTTTATAGCAATTGGTG
1 ATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * * * *
46896 CGAGAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCGTGCATCCTAATGAGAAGACTATATT
65 GGA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
* * * * *
46961 TATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGACTATTCATGTTTGTCTTATATATGAC
129 TATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAG
* * * * * * * *
47026 ACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTACGATACCAAAACATCAAT
194 ACAAACTTTGATTCGATCAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAT
* * * **
47091 GTCAAGTATCCTAATGAAGGGAATTTGTTTTTTGTTCC-AATCTTGAAAAGAATGGAGACTATTA
259 GTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTTAAA-AATGGAGACTATTA
* ** ** * * * * * *
47155 TGAGAATTAATGATTGTCGTATTTTAA-GGAAGAACTTTGATTTCAAGGAAAATAAGGCAAAGAA
323 CGAGAATCGATTCTTGTCTTA-TTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAA
* * * * *
47219 AAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGC
387 AAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-TGTTTATAGT
* * *
47284 ACCAAATCACATAATGAATGAAG
451 GCCTAATCACAAAATGAATGAAG
* * * * *
47307 ATCATTACTAGAACCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAGAATTTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * ** * * * * * *
47372 GAATGAAGCTTTTCTTATGAAACCAAGGCATCAATGTCCTGTATCCTTATGAAAAAACTATGTTT
66 GAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * *
47437 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAACTCTTATTGTTTGTCTTATTTAA-AGG
130 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGA-G
* * * * *
47501 ACAAACTTTAATTCGATCAAAAAC-GATGGAAAGAAACACATTTCTTGCAACACCAAAGCATTAA
194 ACAAACTTTGATTCGATCAAAAACGGA-GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAA
* * *
47565 TGTCATGTATCCTAATGAAGGGAAAATGTTTTTGGTTCCCAATCTTTTAAAAAATGGTGACTATT
258 TGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTT-AAAAATGGAGACTATT
* * * * *** *
47630 ATGAGAATCGATGCTTGTCTTCTTTAAGGGATAAACTTTGATTTTTTTTTTTAAAAATAGGGCAA
322 ACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGA----TTTTAAGAAAAATAGGGTAA
* * *
47695 AGAAAAGATTTCCAAGAAAAAGAAAATCATTAATATCATTTATCC---TCAGGAG--TTAG---A
383 AGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATT-GTTTA
* *
47752 -A-TG--T-GTCACAAAATGAATGAAC
447 TAGTGCCTAATCACAAAATGAATGAAG
* * *
47774 ATCATTACTAGAATCCATGTTTATCTCTTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* ** * * * * *
47839 TAGAAATGCCTTTCTTGTGAATCCAAACCATCAATATCATGTATCCCAATGAGAAAACT-TGTTT
66 GA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * * *
47903 ATCGTGGCTAATCTTGAAAAGAATGAGGATTTGTATGCCTACTAATGTTTGTCTTGTTTAAGAGA
130 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAGA
* * * *
47968 CAAACTTCGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTG
195 CAAACTTTGATTCGATCAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATG
** * * * * * *
48033 TCGCGTATCCTAATGAAGGAAATGTATTTTTAGTTTGC-AATCTTTTAAAGAGA-GGAGACTGTT
260 TCATGTATCCTAATGAAGGGAATATGTTTTT-GGTTCCTAATCTTTTAAA-A-ATGGAGACTATT
* * * *
48096 ACAAGAATTGATTCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGAAAAATAGGGCAAAGAA
322 ACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAA
* * *
48161 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAACGTGTTTATAGT
387 AAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA-TTGTTTATAGT
*
48226 GCCTAGTCACAAAATGAATGAAG
451 GCCTAATCACAAAATGAATGAAG
* * * * * *
48249 ATCATTACT-GAAACCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTGCAAAATTTTGTG
1 ATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * * *
48313 TGAAAAAAACCTTTCTTGCAAAACCAAGGCATCAATATCATGTA-CCATTATGGGAATACTATGT
65 -GGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAATGAGAAGACTATGT
* * * * *
48377 TTATGG-GTCCTAATCTTGAAAAGTATGGGGATTAGTATGACTATTATTGTTTATCTTCTTTGAG
128 TTATGGTG-CCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAG
* * *
48441 AGA-AAACTTTGATTCGATCACAAA-GCATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
192 AGACAAACTTTGATTCGATCAAAAACGGA-GGAAAGAAAAACTTTTCTTGCGACACCAAAGCATC
* * ** *
48504 AATGTCATGTATCCTAAAGAAGGGAATATGTTTTTGGTTCCCAATC-TTTAGTGAATGGTGACTA
256 AATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTTA-AAAATGGAGACTA
* * * * **
48568 TCACAAGAATCGATTCTTCTCTTATTTAAGGGATAAACTTTGATTTTAATTAAAATAGGGTAAAG
320 TTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAG
* * *
48633 AAAAGATTTCCATGCAAAAA-AAAATTATCAATATCATTTATCCTAATGCGGAGAATATGTTTGT
385 AAAAGATTTCCATG-AAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-TGTTTAT
48697 AGTGCCTAATCACAAAATGAATGAAG
448 AGTGCCTAATCACAAAATGAATGAAG
* * * * * *
48723 ATCATTACTAGAGTCCATGTTTGCCTCATTTGAGGCATGAATTTAGACTTTACAAAACTTGGCGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
48788 GAAAAAAGCTCTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTT
66 GAAAAAACCT-TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * *
48853 ATGGTGCCTAACCCT-AAAAAAATGGGGATTTGTATGGCTATTAATGTTTGTCATT-TTTAGGAG
130 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTC-TTATTTAAGAG
* ** *
48916 ACAAACTTTGATTCAATCAAAAGTGGAGGAAAGAAAAACTTTTCTTGCAACACCAAAGCATCAAT
194 ACAAACTTTGATTCGATCAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAT
*
48981 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTTTAAAGAATGGAGACTATTA
259 GTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTTAAA-AATGGAGACTATTA
* * *
49046 CAAGAATCAATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAGA
323 CGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAAA
* * * *
49111 AGATTTACATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGAATCGTTTATAGTG
388 AGATTTCCATG-AAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATTGTTTATAGTG
* * * *
49176 ACTAATGACATAATGAGTGAAG
452 CCTAATCACAAAATGAATGAAG
* * ** * * * * * * * *
49198 ATCTTTGCCGGAAACCATATTTGTATCATTTGAGGCACAAACTTATACTTTATAGAAAGTGGTGC
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-
* * * * * **
49263 AGAAAAAGCCTTTCTTGCGAAACCAAGGAATCAATATCATGTATTCTAACAAGAAGACTATGTTT
65 GGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * *
49328 ATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTATTACTA
130 ATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA
49369 CTGAGTTTTG
Statistics
Matches: 2518, Mismatches: 426, Indels: 135
0.82 0.14 0.04
Matches are distributed among these distances:
462 59 0.02
465 9 0.00
466 186 0.07
467 124 0.05
468 2 0.00
470 1 0.00
471 2 0.00
472 3 0.00
473 54 0.02
474 482 0.19
475 1247 0.50
476 286 0.11
477 9 0.00
480 54 0.02
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (473 bp):
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
TGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAAGAGAC
AAACTTTGATTCGATCAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATATGTTTTTGGTTCCTAATCTTTTAAAAATGGAGACTATTACGA
GAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGA
TTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATTGTTTATAGTGCCTA
ATCACAAAATGAATGAAG
Found at i:50928 original size:13 final size:13
Alignment explanation
Indices: 50910--50935 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50900 TACACAAAGT
50910 ATGTATCGATACA
1 ATGTATCGATACA
50923 ATGTATCGATACA
1 ATGTATCGATACA
50936 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:50933 original size:32 final size:33
Alignment explanation
Indices: 50892--50955 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
50882 TAGCTAAACT
**
50892 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
50924 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
50956 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:52642 original size:475 final size:472
Alignment explanation
Indices: 51707--57994 Score: 6555
Period size: 475 Copynumber: 13.3 Consensus size: 472
51697 ATAAGCTTTC
* * *
51707 ATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCACTTGAGGCACGAACTTAGACTTTACAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * *
51772 AAATTGGTGTTAAAGAAACCCTTCTTGCAAAACCAAAGCGTCAATATAATGTATCCTAATGAGAA
66 AAATTGGTG-GAAA-AAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* * *
51837 GACTATGTTTATGGTGCCTAAGCGTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCTT
129 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATT-ATGTTTGTCTT
** * * *
51902 -TTTAAAGAGACAAACTTTGATTTAATAAAAAACGGAGGAAAGAAAAACTTTTCTTGCGACACCA
193 ATTT-AAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * *
51966 AAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCCTAATTTTTTAAAAAATG
257 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCTTTTAAAGAATG
* * * * * * *
52031 GAGACTGTTACGAGAATCAATTCTTGCCTTGTTTAAAGGATGAACTTTGATTTTCAGAAAAATAG
321 GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAATAG
* * * *
52096 GGTAAAGAAAAGA-TTTCTATGAAAAAGAAAATTATCAATATCATTTAACCTAATGAGGAGAAT-
386 GGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * *
52159 TATTTATAGTGCCGAATCACATA
450 TGTTTATAGTGCCTAATCACAAA
* * * * * * * **
52182 ACGTATGAAGATCATT-TTCGGAACCCATGTTTGTCTTATTTGAGGCACAAACTTATACTTTGTA
1 ATGAATGAAGATCATTACT-AGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
** * * * *
52246 GCAATTGGTGCGAGAAAAGCCTTTCTTGTGAAACCAAGGCATCAATATCGTGCATCCTAATGAGA
65 AAAATTGGTG-GA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA
* *
52311 AGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGGATTAGTGTGACTATTCATGTTTGTCT
128 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATT-ATGTTTGTCT
* * * * * * * *
52376 TATATATGAAACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTACGATACCA
192 TATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * **
52441 AAACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTTGTTCCAATCTTGAAAAGAATGG
257 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTTTAAAGAATGG
* * * * * * *
52506 AGACTATTACGAGAATTAATGATTGTCGTATTTTAA-GGAAGAACTTTGATTTCAAGGAAAATAA
322 AGACTGTTACGAGAATCAATGCTTGTCTTA-TTTAAGGGAAGAACTTTGATTTTAAGTAAAATAG
* * *
52570 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTATCCTAATAAGGAGAATAT
386 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
52635 GTTTATAGCGCCTAATCACATA
451 GTTTATAGTGCCTAATCACAAA
* * *
52657 ATGAATGAAGATCATTACTAGAACCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAG
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * ** * * * * ** *
52722 AATTTGGTGGGAATAAAGCTTTTCTTATGAAACCAAGGCATCAATGTCGTGTATCGTTGTGAAAA
66 AAATTGGT-GGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* * * *
52787 AACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTCTTATTGTTTGTCTT
129 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTA-TGTTTGTCTT
* * ** *
52852 ATTTAAAAGACAAACTTTAATTCGATCAAAAACAATGGAAAGAAAAGCATTTCTTGCGACACCAA
193 ATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
** * *
52917 AGCATCAATGTCATGTATCCTAATGAAGGGAAAATGATTTTGGTTCCCAATCTTTTAAAAAATGG
258 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTTTAAAGAATGG
* * * * * * ***
52982 TGACTATTATGAGAATCGATGCTTGTCTTTTTTAAGTGATA-AACTTTGATTTTTTTTAAAATAG
322 AGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGA-AGAACTTTGATTTTAAGTAAAATAG
* * * * **
53046 GGCAAAGAAAAGATTTCCAAGCAACAGAAAATCATTAATATCATTTATCC----GCCG-G-A---
386 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * *
53102 G-TTAGAATG--T-GTCACAAA
451 GTTTATAGTGCCTAATCACAAA
* * * *
53120 ATGAATGAACATCATTACTAGAATCCATGTTTGTCTCTTTTAAGGCACGAACTTAGACTTTACAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * *
53185 AAATTGGTGGTAGAAATGCCTTTCTTGTGAAACCAAACCATCAATATCATGTATCCTAATGAGAA
66 AAATTGGTGG-A-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* * * * * * *
53250 AACT-TGTTTATCGTGGCTAATCTTGCAAAGAATGAGGATTTGTATGACTACTAATGTTTGTCTT
129 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTA-TTATGTTTGTCTT
* *
53314 GTTTAAGAGACAAACTTCGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
193 ATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* ** * * * * *
53379 AGCATCAGTGTCGCGTATCCTAATGAAGGAAATGTATTTTTAGATTGCAATCTTTTAAAGAGTGG
258 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT-GGTTCCAATCTTTTAAAGAATGG
* ** * ** *
53444 AGACTGTTACAAGAATTGATTCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGAAAAATAGG
322 AGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAATAGG
** * * *
53509 GCAAAGAAAAGA-TTTCACACAAAAGAAAATCATCAATATCATTTATCCTGATAAGGAGAACGTG
387 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
53573 TTTATAGTGCCTAGTCACAAA
452 TTTATAGTGCCTAATCACAAA
* * * * *
53594 ATGAATGAAGATCATTACTGGAACCTATGTTTATCTCATTTGAGGCATGAACTTAGACTTTGCAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * *
53659 AATTTTGTGTGAAAAAAACCTTTCTTGCGAAACCAAGGCATCAATATCATGT-GCCATTATGAGA
66 AA-ATTG-GTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAATGAGA
* *
53723 ATACTATGTTTATGG-GTCCTAATCTTGAAAAGTATGGGGATTAGTATGACTATTATTGTTTGTC
128 AGACTATGTTTATGGTG-CCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTA-TGTTTGTC
* * * *
53787 TTATTTGAGAGA-AAACTGTGATTCGATCACAAA-GCATGGAAAGAAAAGCTTTTCTTGCGACAC
191 TTATTTAAGAGACAAACTTTGATTCGATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGCGACAC
*
53850 CAAAGCATCAATGTCATGTATCCTAATGAAGGGTATGTGTTTTTGGTTCCTAATCTTTTAAAGAA
255 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCTTTTAAAGAA
* * * * * * *
53915 TCGAGACTATTACAAGAATTAATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAAT
319 TGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAAT
* * * * * *
53980 AGGGTAAAGAGAAGATTTACATGCAAAAAAAAATCATCAATATCTTTTATCCTAATGAGAAGAAT
384 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
54045 -CGTTTATAGTGACTAATGACATA
449 GTGTTTATAGTGCCTAATCACAAA
* * * ** * * * * ** * * * *
54068 ATGCATGAAGATCTTTGCCGGAAACCATATTTGTATCATTGGAGGCATAAACTTATACTTAATAG
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * **
54133 AAAGTGGTGCAGAAAAAGCCTTTCTTGCGAAACCAAGGAATCAATATCATGTATTCTAACAAGAA
66 AAATTGGTG--GAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* * *
54198 GACTATGTTTATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTATTACTATTGA-GTTTTGTCT
129 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATT-ATG-TTTGTCT
* ** ** * *
54262 TATATAAGACG-CAAACTTTGATTATATCAAAAATAGTGGAAGGAAAAGCTTTTCTTGTGACA-C
192 TATTTAAGA-GACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * **
54325 AAAACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTCGTTCCAATCTTGAAAAGAATG
256 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTTTAAAGAATG
* * * * * * * * * *
54390 GAGACTATTACCAAAATTAGTGATTGTCTTATTTTAGGGAAGAACTTTGATTTCAAGGAAAATAA
321 GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAATAG
* * * * *
54455 GGCAAAGAAAAGATTTTCATGTAAAAGAAAATCTTCAATACCACTTATCCTAATGAGGAGAATAT
386 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
54520 GTTTATAGCGCCTAATCACATA
451 GTTTATAGTGCCTAATCACAAA
** * * * ** * *
54542 ATGAATGAAGATCATTACCGGAACTCGTGTTTGTCTCATTTGAGGCATGAACTTAGACTCGATAG
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* ** * * * * ** *
54607 AATTTGGTGGGAATAAAGATTTTCTTGCCAAACCAAGGCGTCAATATCGTGTATCCTTGTGAAAA
66 AAATTGGT-GGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* * *
54672 AACTATGTTTATAGTGCCTAAT-TCTAAAAAGAATGGGGATTAGTATGACTATTATTGTTTGTCT
129 GACTATGTTTATGGTGCCTAATCT-TGAAAAGAATGGGGATTAGTATGACTATTA-TGTTTGTCT
* * * *
54736 TATTTAAGAGACAAACTTTAATTCGATAAAAAAAGGTGGAAAGAAAAGCTTTTCTTGTGACACCA
192 TATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* ** *
54801 AAGCATCGATGTCATGTATCCTAATGAAGGGAAAATGTTTTTGGTTCCCAACCTTTTAAAGAATG
257 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTTTAAAGAATG
* * ** * * *
54866 GTGACTGTTACGAGAATCGACACTTGTCTTCTTTAAGTGATA-AACTTTGATTTTAATTAAAATA
321 GAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGA-AGAACTTTGATTTTAAGTAAAATA
* * * * *
54930 TGGTAAAGAAAAGATTTTTATGC-AAA-AAAATCATAAATATCATTTATCCTAAGGAGGAGAATG
385 GGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* *
54993 TTTTTATAATGCCTAATCA-AAA
450 TGTTTATAGTGCCTAATCACAAA
* * ** * * * * *
55015 ATAAATAAAGATTTTTGCTAGAATCCATGTTTGTCTTATTT-AGGGCCCAAACTTAGACTTTACA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACA
* * * * * * * *
55079 AAAATTGGTAGTAAAAGTGGCTGTCTTACGAAACCAAACCATTAATATCATGTATTCTAATGAGA
65 AAAATTGGT-GGAAAA-AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA
* *** *
55144 AGACTATCTTTGCAGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTATTGTTTGTCT
128 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTA-TGTTTGTCT
* * * * * *
55209 TATTTAAGGGACAAACTTTGATTCGGTTAAGAACGATGGAAAGAAAAGCTTTTCTTGTGACACCA
192 TATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
** * * * *
55274 AAGCATCGGTGTCATGTATCCTAAAGAAGGGAATATGATTTTGGTTTCAATCTTTTAAAGAATGG
257 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTTTAAAGAATGG
* * * * * * * * * *
55339 TGACCGTTATGGGAATCGATGCTTGTCTTATTTAAGGGGTA-AACTTTGATATCAATTAAAATAT
322 AGACTGTTACGAGAATCAATGCTTGTCTTATTTAA-GGGAAGAACTTTGATTTTAAGTAAAATAG
* * * *
55403 GGTAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAA--T
386 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
55466 G----T-GT--C----C-CATA
451 GTTTATAGTGCCTAATCACAAA
*** * *
55476 ATGAGCAAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * *
55541 AAATTGGCGGAAAAGATGCCTTCCTTGTGAAACCAAACCATCAATATCATGTTTCCTAATGAGAA
66 AAATTGGTGGAAAA-A-GCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* *
55606 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACT-TAATGTTTGTCTTA
129 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATGTTTGTCTTA
* * * * * *
55670 TTGCAA-AGACAAACTTTGGTTCGATCAAAAACAGTGGAAAAAAAAGCTTTTCTTGCGACACTAT
194 TT-TAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
** * ** *
55734 AGCATCAATGTCAACTATCCTAAAGAAGGGAAAATGTTTTTGGTTCCCAATCTTTTTAAGAATGG
258 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTTTAAAGAATGG
** * * * * * *
55799 TTACTATTATGAGAATCGATGCTTGTCTTAATGAAGGGATA-AACTTTGATTTTAATTAAAATAG
322 AGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGA-AGAACTTTGATTTTAAGTAAAATAG
* * *
55863 GGCAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTGATGAGGGGAATG
386 GGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* *
55927 TGTTTATGGTGCCAAATCACAAA
450 TGTTTATAGTGCCTAATCACAAA
* ** * * *
55950 ATGAATGAAGATCATTAC-AAAATTCGTGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * *
56014 AAATTGGTAGGAAAAGAGCCTTTCTT-CCAACGCCAAAGCATCAATATGATGTATCGTAAAGAGA
66 AAATTGGT-GGAAAA-AGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA
* * * *
56078 AGACTATGCTTATGGTGCATAATCCTGAAAAGAATGGGGATTTGTATGACTATTAATGTTTGTCT
128 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATT-ATGTTTGTCT
* * *
56143 TATTTAAGAGACAAACATTGATTCGATCAAAAACAGTGGAATGAAAAGCTTTTCTTGCGACACCA
192 TATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * * * *
56208 AAGGATCCATGTTATGTAT-CTCATGACGGGATTGTGTTTTTGGTTCCCAATCTTTTGAATAATG
257 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTTTAAAGAATG
* * * *
56272 GGGAC-GAATACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATA
321 GAGACTG-TTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAATA
* * *
56336 TGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGTGGAGAATG
385 GGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
*
56401 TGTTTATAGTGCCTAATCACATA
450 TGTTTATAGTGCCTAATCACAAA
* * * *
56424 ATGAAT-AATGATCATTACTATAACCCATGTTTGTCTCATTTGAAGCAGGAACTTAGACTTTGCA
1 ATGAATGAA-GATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * *
56488 AAAATTAGTGCGAAGAAAGCCTTTTTTGTGAAACCAAGGCATCAAAATCATGTATCCCT-ATGAG
65 AAAATTGGTG-GAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT-CCTAATGAG
*** * *
56552 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAAATGTATTAGTATGACTATTAT-TGTTATC
127 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATGT-TTGTC
* * ** * * *
56616 TTATTTAAGAGATAAACTTTGATTCAATCAAAAACCATGAAAAGAAAAGCTTTTCCTACGACACC
191 TTATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * * * *
56681 ATAGCATCAATGTCATGTATCCTAATGAAGGTACTATGTTTTTTGTTCCCAATGTTTTAAAGAAT
256 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTTTAAAGAAT
* * ** * * * * *
56746 GGTGACTGTTATGAGAATTGATGCTAGTTTTATTTAAGGGATA-AACTTTGATTTAAATTAAAAA
320 GGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGA-AGAACTTTGATTTTAAGTAAAAT
* * *
56810 AGGGCAAAGAAAAGATTTCCATGCAGAAA-AAAATCATCAATATCATTTACCCTAAGGAGGAGAA
384 AGGGCAAAGAAAAGATTTTCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
*
56874 TATGTTTATAGTGCCTAATCACAAA
448 TGTGTTTATAGTGCCTAATCACAAA
* * * * * *
56899 ATGAATAAAGATCATTACTAGAATCTACGTTTGTCTCATTTGAGGCATGGACTTAGACTTTACAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* ** * ** * **
56964 AAATTGATGGTAAAAAGGGTTTTCTTGC-AAAGCTAATCCATTAATATTGTGTAAT-CTAATGAG
66 AAATTGGTGG-AAAAA-GCCTTTCTTGCGAAA-CCAAAGCATCAATATCATGT-ATCCTAATGAG
* *
57027 AAGACTATATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTATTGTTTGTC
127 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTA-TGTTTGTC
* * * * *
57092 CTATTTAAGAGACAAATTTTGATTCGATC-AAAACAGGTGCACAGAAAAGCTTTTCTTGCAACAC
191 TTATTTAAGAGACAAACTTTGATTCGATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGCGACAC
* ** * **
57156 CAAGGCATCAATAACATGTATCCTAATAAAGGGAAAATGTTTTTGGTTCCCAAT-TTGTTAAAGA
255 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTT-TTAAAGA
* * * * * * *
57220 ATGGTGATTGCTATGAGAATCAATCCATGT-TTGATTTAAGGGATA-AACTTTGATTTTAATTAA
318 ATGGAGACTGTTACGAGAATCAATGCTTGTCTT-ATTTAAGGGA-AGAACTTTGATTTTAAGTAA
* * * * *
57283 AATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATAAATATCATTCATCCTAATGAGAAG
381 AATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
*
57348 AATGTGTTTATAGTGCCTAATCACGAA
446 AATGTGTTTATAGTGCCTAATCACAAA
* ** * *
57375 ATGAATGAAGATCATTACTGGAACCCATGTTTGTCTTGTTTGAGGTACGAACTTAGACTTTGCAA
1 ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
** * * * * *
57440 AAATTCTTGGGAAAAAAGCCTTTCTTGCGAAACCAAATCATCAATATGATGTATCTTAAGGGGAA
66 AAATTGGT-GG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
* *
57505 GACTATGTTTATGGTGCCTAATGGTGGAAAAGAATGGGGATTAGTATGAGC-ATTCATGTTTGTC
129 GACTATGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGA-CTATT-ATGTTTGTC
* * * * * *
57569 TTAATTAAGAGGCAAACTTTGGTT-GTATCAAAAATGGTGGAAAGGAAAGTTTTTCTTGCGACAC
191 TTATTTAAGAGACAAACTTTGATTCG-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * **
57633 CAAAGCATCAATGTCTTGTATCATAATAAAGGGAATGTGTTTTTGGTTCTTAATCTTGAAAAGAA
255 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC-CAATCTTTTAAAGAA
* *
57698 TGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGACGAACTTTGATTTCAAGTAAAAT
319 TGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAAT
* *
57763 AGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCGTCAATATCATTTATCCTAATGAGGAGAAT
384 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
57828 GTGTTTATAGTGCCTAATCACAAA
449 GTGTTTATAGTGCCTAATCACAAA
* * * * *
57852 ATGAGTGAAGATCAAT-CATAGAATCCACGTTTATCTCATTTGAGGCACGAACTTAGACTTTACA
1 ATGAATGAAGATCATTAC-TAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * *
57916 AAAATTGGTGGGAAAATGCCTTTCTTGAGAAAGCAAAACATCAATATCATGTATCCTAATGAAAA
65 AAAATTGGT-GGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA
57981 GACTATGTTTATGG
129 GACTATGTTTATGG
57995 CCCCAATCAT
Statistics
Matches: 4837, Mismatches: 846, Indels: 259
0.81 0.14 0.04
Matches are distributed among these distances:
459 105 0.02
460 128 0.03
461 180 0.04
462 222 0.05
463 121 0.03
464 2 0.00
465 2 0.00
466 7 0.00
467 5 0.00
468 1 0.00
469 1 0.00
470 2 0.00
471 7 0.00
472 97 0.02
473 525 0.11
474 1215 0.25
475 1256 0.26
476 613 0.13
477 338 0.07
478 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (472 bp):
ATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
AAATTGGTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGA
CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTTTAAAGAATGGAGAC
TGTTACGAGAATCAATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGTAAAATAGGGCAA
AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
TAGTGCCTAATCACAAA
Found at i:58883 original size:16 final size:16
Alignment explanation
Indices: 58864--58898 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
58854 TGATTCGATC
58864 AAAAATGGTGGAAAGA
1 AAAAATGGTGGAAAGA
* *
58880 AAAACTTGTGGAAAGA
1 AAAAATGGTGGAAAGA
58896 AAA
1 AAA
58899 GCTTGTCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.26, T:0.14
Consensus pattern (16 bp):
AAAAATGGTGGAAAGA
Found at i:58903 original size:16 final size:16
Alignment explanation
Indices: 58871--58904 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
58861 ATCAAAAATG
58871 GTGGAAAGAAAAACTT
1 GTGGAAAGAAAAACTT
*
58887 GTGGAAAGAAAAGCTT
1 GTGGAAAGAAAAACTT
58903 GT
1 GT
58905 CTTGTGACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.21
Consensus pattern (16 bp):
GTGGAAAGAAAAACTT
Found at i:62243 original size:13 final size:13
Alignment explanation
Indices: 62225--62273 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
62215 TACATGTACC
62225 TTGTATCGATACA
1 TTGTATCGATACA
62238 TTGTATCGATACA
1 TTGTATCGATACA
62251 -TG-AT-G--A-A
1 TTGTATCGATACA
62258 TTGTATCGATACA
1 TTGTATCGATACA
62271 TTG
1 TTG
62274 CTTCTAACGG
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
7 1 0.03
8 3 0.10
9 2 0.07
10 2 0.07
11 2 0.07
12 3 0.10
13 17 0.57
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:68486 original size:20 final size:20
Alignment explanation
Indices: 68448--68487 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
68438 TTACAAATTT
68448 CTTCATTTTCACCTCAAAATA
1 CTTCATTTTCA-CTCAAAATA
68469 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
68488 CATTAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:68784 original size:20 final size:22
Alignment explanation
Indices: 68759--68801 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
68749 GCAGCCACCT
*
68759 CTAGGTCGCGATC-GGCA-CTC
1 CTAGGTCGCAATCAGGCAGCTC
68779 CTAGGTCGCAATCAGGCAGCTC
1 CTAGGTCGCAATCAGGCAGCTC
68801 C
1 C
68802 CACACCCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 4 0.20
22 4 0.20
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.19
Consensus pattern (22 bp):
CTAGGTCGCAATCAGGCAGCTC
Found at i:70820 original size:13 final size:13
Alignment explanation
Indices: 70802--70828 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70792 ACATTATGCT
70802 TTGTATCGATACA
1 TTGTATCGATACA
70815 TTGTATCGATACA
1 TTGTATCGATACA
70828 T
1 T
70829 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:74751 original size:20 final size:20
Alignment explanation
Indices: 74726--74782 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
74716 TTTTACCTAG
* *
74726 ATGTATCGATATATTTTTCA
1 ATGTATCGATACATTCTTCA
**
74746 ATGTATTAATACATTCTTCA
1 ATGTATCGATACATTCTTCA
74766 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
74783 GTCTTTTCAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.46
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:79089 original size:475 final size:476
Alignment explanation
Indices: 78025--79942 Score: 2313
Period size: 476 Copynumber: 4.0 Consensus size: 476
78015 CGTCGCGCCA
* * * * *
78025 CCAATCTTTTAAAGAATGGAGACTGTTAGGAGAATTGATTCTTATCTTATTTTAGGGATTAACTT
1 CCAATCTTTTAAAGAATGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGATGAACTT
* * * *
78090 T-ATTTTAAGAAAAATAAGGCAAA-AAAATATTTTCATGCAAAAGAAAATGATCAATATCATTTA
66 TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * *
78153 TCCTAACGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAGAATC
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATC
* * * * *
78218 CATATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAGAAA-GCCTTTA
196 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGTAA-AAATGCCTTTC
* * * * * *
78282 TT-CTGAAGCCAAAGCATCAACATCATGTATCCTAATGGGAACACT-TGGTTTTTGGTGCCTAAT
260 TTGC-GAAACCAAACCATCAATATCATGTATCCTAATGAGAAGACTAT-GTTTATGGTGCCTAAT
* * * * *
78345 CATGAAAAGAGTAGGGATTAGTATGACCATTCACGTTTGTCTTATATAAGACACAAACTTTGATT
323 CATGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * ** ** * *
78410 CTATTAAAAACGGTGGAAGGAAAAGCTATTCTTGGGACACCAAAGGGTCAATGCCTTGTATCCTA
388 CGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTA
78475 ATGAAGCGAATGTATTTTTGGTTC
453 ATGAAGCGAATGTATTTTTGGTTC
* ** * * * *
78499 CTAATCTTGAAAAGAATGGAGACTGTTATGAGAGTCGATGCTTATCTTATTTCAGAGATGAACTT
1 CCAATCTTTTAAAGAATGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGATGAACTT
* * * * *
78564 TGATTTTAAGGAAAATAGGCCAAAGAAAAGATTTCTACGTAAAAGAAAATCATCAATATCATTTA
66 TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * *
78629 TCCTAATGAGGAGAATGTGTTTATATTGTCTAATCACAAAATGACTAAAGATCATTAGTAGAATC
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATC
* *
78694 CATGTTTGTCTCATTTGAGGCACAAACCTAGACTTTACAAAAATTGGTGGTAAAAATGCCTTTCT
196 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGTAAAAATGCCTTTCT
* * * * * * *
78759 TGCAAAACCAAACCATCAATATCATGTATCCTTATGAGAAGACAATGTTTATGGAGCATGATCGT
261 TGCGAAACCAAACCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCAT
* *
78824 GAAAAGAATGGGGATTTGTATGACTATTCATGTTTGT-TTATTTAAGAGACAAACTTTGATTCGA
326 GAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGA
*
78888 TCAAAAACGGTGGAAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATG
391 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATG
* *
78953 AAGGGGATGTATTTTTGGTTC
456 AAGCGAATGTATTTTTGGTTC
** * *
78974 CCAATCTTTTAAAGAATGGAGACAATTACAAGAATCGATTCTTATCTTATTTAAGGGATGAACTT
1 CCAATCTTTTAAAGAATGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGATGAACTT
* * * *
79039 TGATTTTAAGAAAAATAGGGCATAGAAATGATTTCCATGCAAAAGAAAATCATCAGTTTCATTTA
66 TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
** * * *
79104 TCCTAATGAGGCA-AAT-TGTTTATAGCACCTAATCACAAAATGAATGAAGATCATTACTGGAAC
131 TCCTAATGAGG-AGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAAT
* * *
79167 CCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGATTGG-AAAAAAGCCTTT
195 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGTAAAAATGCCTTT
* * * * ** *
79231 CCTGTGAAACTAAAGCATCAATATGGTGTATCCTAATGAGATGACTATGTTTATGGTGCCTAATC
259 CTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * *
79296 CTGAAGAGAATAGGGATTAGTACGAGTATTCATGTTTGTCATATTTAAGAGACGAACTTTGATTC
324 ATGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
79361 TATCAAAAATGGTGGAAAGAAAAGCTTTTCTAAGGACACCAAAGCATCAATGTCATCTATCCTAA
389 GATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAA
*
79426 TGAAGCGAATGTA-TTTTGGCTTT
454 TGAAGCGAATGTATTTTTGG-TTC
*** * *
79449 CCAATCTAGAAAAGAATGGAGACTGTTACTCG-GAAT-GATGCTTGTCTTATTTAAAGGATGAAC
1 CCAATCTTTTAAAGAATGGAGACTGTTA--CGAGAATCGATGCTTATCTTATTTAAGGGATGAAC
* * * *
79512 TTTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATTTCATT
64 TTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* ** ** * * *
79577 TATCCTAATGAGGACAAAATGTTTATCTTGTCTAATCACAAAA-GAAGTAAATACCATT-CGTAG
129 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-TAAAGATCATTAC-TAG
* * * *
79640 AATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAGAATTAGTAGTAAAAATGCCT
192 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGTAAAAATGCCT
* * ** * * *
79705 TTCTTGTGAAGCCAAACCATCAATATTGTGTATTCTAATGAGAAGATTTTGTTTATGGTGCCTAA
257 TTCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * * *
79770 TCTTGAAAAGAATAAGGATTTGTAGGACTATT-ATTGTTTGTCTTATTT-AGAAGACACACTTTG
322 TCATGAAAAGAATAGGGATTAGTATGACTATTCA-TGTTTGTCTTATTTAAG-AGACAAACTTTG
* * * *
79833 ATTCGATCAAAAATGGTGGAAAGAAAAGATTTTCTTGCGATACCAAAGCATCAATGTCATGTATC
385 ATTCGATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATC
* *
79898 TTAATGAAG-GAAATGTGTTTTTGGTTC
450 CTAATGAAGCG-AATGTATTTTTGGTTC
*
79925 CCATTCTTTTAAAGAATG
1 CCAATCTTTTAAAGAATG
79943 TACTTTTAGA
Statistics
Matches: 1230, Mismatches: 194, Indels: 38
0.84 0.13 0.03
Matches are distributed among these distances:
474 242 0.20
475 473 0.38
476 506 0.41
477 9 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
CCAATCTTTTAAAGAATGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGATGAACTT
TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATC
CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGTAAAAATGCCTTTCT
TGCGAAACCAAACCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCAT
GAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGA
TCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATG
AAGCGAATGTATTTTTGGTTC
Found at i:80161 original size:49 final size:49
Alignment explanation
Indices: 80055--80167 Score: 147
Period size: 49 Copynumber: 2.3 Consensus size: 49
80045 TTTTACCCAG
80055 ATGTATCGATACATTCTATCTTTTACCCAAATGTATCGATACATTTTTCA
1 ATGTATCGATACATTCTATCTTTTA-CCAAATGTATCGATACATTTTTCA
* * * * * *
80105 ATATATCGATACATTCTGTCTTTTTA-CTAGTGTATCGATACTTTTTTTA
1 ATGTATCGATACATTCTATC-TTTTACCAAATGTATCGATACATTTTTCA
80154 ATGTATCGATACAT
1 ATGTATCGATACAT
80168 CTAGTTAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
49 32 0.58
50 18 0.33
51 5 0.09
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.45
Consensus pattern (49 bp):
ATGTATCGATACATTCTATCTTTTACCAAATGTATCGATACATTTTTCA
Found at i:81040 original size:20 final size:21
Alignment explanation
Indices: 81001--81040 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80991 TAGCCTTTGA
*
81001 CCATGCATTTTTTACTATGTT
1 CCATGCATTTTTAACTATGTT
81022 CCATGCATTTTTAAC-ATGT
1 CCATGCATTTTTAACTATGT
81041 CTAGCATCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (21 bp):
CCATGCATTTTTAACTATGTT
Found at i:83830 original size:158 final size:157
Alignment explanation
Indices: 83645--84788 Score: 621
Period size: 158 Copynumber: 7.2 Consensus size: 157
83635 TTATGACACC
* * * *
83645 AAAGCATCAATGTCATCTATCCCAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
1 AAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
* * * *
83710 GGAGACTATTACAAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATA
66 GGAGACTATTACGAGAATTCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--AAAATA
*
83775 AGGCAAAGAAAAGATTTTCATGCAAAA-A
129 AGGCAAAGAAAAGATTTTCTTGCAAAACA
* * * * * ** * * *
83803 AAATCATTAATATCATTTATCCTAATGAGGTGAATGTGTTTATAATGCCTAATCATAAAAAGAAT
1 AAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
* * * * * * * *
83868 GAAGA-TCCTTATC-AGAATAT-ATGTTTGCCTCATTTGAA-GAACGAACTTAGACTTTACAAAA
66 GGAGACT-ATTA-CGAGAAT-TCATGTTTGTCTTATTT-AAGGGATGAACTTTGATTTTA-AAAA
* * ** *
83929 AT-TGGTAGGAAG-AAAGCCTTTCTTGCAAAACT
126 ATAAGGCA--AAGAAAAGATTTTCTTGCAAAACA
* * * * * * *
83961 AAAGCATCAATATCATGTATCCTAGTG-AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
1 AAAGCATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
* * * * ** * * ** ** *
84025 TGGGGATTAGTATGACTATTCTTGTTTGTCTTATATAAGATACAAACTTTGATTCCATAAAAAA-
65 TGGAGACTATTACGAGAATTCATGTTTGTCTTATTTAAGGGATGAACTTTGATT--TTAAAAAAT
* * * ** * *
84089 CAGTGGAAAGAAAAGCTTTTCTTGTGACACC
128 AAG-GCAAAGAAAAGATTTTCTTGCAAAACA
* * * * *
84120 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAGAATAAT
1 AAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
* * * * * **
84185 GGAGGCTATTACGAGAA-TCGATGTTTATTTTTTTTAAGGGATTAACTTTGATTTATGGAAAATA
66 GGAGACTATTACGAGAATTC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTT-TAAAAAATA
* *
84249 AGGCAAAGAAAAGATTTTCATGCAAAAGA
129 AGGCAAAGAAAAGATTTTCTTGCAAAACA
* * * * *
84278 AAATCATCAACATCTTTTATCCTAAT-AAGGCGAATGTGTTTATT-GTGCCTAATC--GCAAAAT
1 AAAGCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTT-TTGGTTCCTAATCTTG-AAAA-
* * * * * * *
84339 GAGTGAAGA-TCATTA-GTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAA
62 GAATGGAGACT-ATTACG-AGAATTCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AA
** * * ** * *
84402 AAATTGGTGGAAA-AAATGGCTTTCTTTCAAAACC
124 AAATAAG-GCAAAGAAAAGATTTTCTTGCAAAACA
* * * * * * * *
84436 AAACCATCAATATCGTGTATCATAATG-AGAAGACTATATTTATGG-TCCTTAATCTTGAAAAGA
1 AAAGCATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTTTGGTTCC-TAATCTTGAAAAGA
* * * * ** ** *
84499 ATAGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTATAAAAAAT
64 AT-GGAGACTATTACGAGAATTCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAT
* * * * * * *
84563 -GGTGGAAAGAAATGCTTTTCTTACGACACA
128 AAG-GCAAAGAAAAGATTTTCTTGCAAAACA
* * * * *
84593 AAAGCATCAATGTC-TTGTATCCTAATGAAGGGAATGTG-TTTCGGCTTTCC-AATATTGGAAAG
1 AAAGCATCAATATCATT-TATCCTAATGAAGAGAATGTGTTTTTGG--TTCCTAATCTTGAAAAG
* * * *
84655 AATGGAGACTATTATGAGAATTAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGATA
63 AATGGAGACTATTACGAGAATTCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--AAA
* * * * *
84720 A-AAGGCAAGGAAAAGATTTCCATGGAAAAGA
126 ATAAGGCAAAGAAAAGATTTTCTTGCAAAACA
*
84751 AAATCATCAATATCATTTATCCTAAT-AAGGAGAATGTG
1 AAAGCATCAATATCATTTATCCTAATGAA-GAGAATGTG
84789 CTTATAGTGC
Statistics
Matches: 728, Mismatches: 206, Indels: 104
0.70 0.20 0.10
Matches are distributed among these distances:
156 19 0.03
157 142 0.20
158 422 0.58
159 138 0.19
160 7 0.01
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (157 bp):
AAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
GGAGACTATTACGAGAATTCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAATAAG
GCAAAGAAAAGATTTTCTTGCAAAACA
Found at i:84226 original size:475 final size:472
Alignment explanation
Indices: 83331--84948 Score: 1872
Period size: 475 Copynumber: 3.4 Consensus size: 472
83321 CGTTGCGACA
* *
83331 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAATTGAATGAAGATCA
1 AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-
* ** *
83396 C-TAGTAGAATCCATGTTT-CTCACATTTAA-TCCGTGAACTTAGACTTTACAAATATTGGTGGG
65 CTTAGTAGAATCCATGTTTGC-CTCATTTAAGAAC--GAACTTAGACTTTACAAAAATTGGT-GG
** * * * *
83458 AAAAATGCCTTTCTTGTGAAACCAAAACATCAAAATCGTGTTTCTCTTATTTAATTAGAAGATTA
126 AAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATC-C-----TAATGAGAAGACTA
** * * * * * *
83523 TATTCGTGGTGCCTAATCTTGAAAAAAATGAGGCTTAGTTTGAGTATTCAAGTTTGTCTTTTTTA
185 TATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * *
83588 AGAGAAAAAATTTGATTCTATCAAAAATGGTGGAAAG-AAAGCTTTTCTTATGACACCAAAGCAT
250 AGAGACAAACTTTGATTC-ATAAAAAATGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCAT
* * * *
83652 CAATGTCATCTATCCCAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
314 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTGAGAAGAATGGAGACT
*
83717 ATTACAAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAA
378 ATTACGAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAA
*
83782 GAAAAGATTTTCATGCAAAA-AAAATCATT
443 GAAAAGATTTTCATGCAAAAGAAAATCATC
* * * * *
83811 AATATCATTTATCCTAATGAGGTGAATGTGTTTATAATGCCTAATCATAAAAAGAATGAAGATCC
1 AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
**
83876 TTA-TCAGAATATATGTTTGCCTCATTTGAAGAACGAACTTAGACTTTACAAAAATTGGTAGGAA
66 TTAGT-AGAATCCATGTTTGCCTCATTT-AAGAACGAACTTAGACTTTACAAAAATTGGT-GGAA
* * * * *
83940 GAAA-GCCTTTCTTGCAAAACTAAAGCATCAATATCATGTATCCTAGTGAGAAGACTATGTTTAT
128 -AAATGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATATTTAT
* * * * *
84004 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCTTGTTTGTCTTATATAAGATACA
192 GGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
** *
84069 AACTTTGATTCCATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
257 AACTTTGATT-CATAAAAAATGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTC
* *
84134 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAGAATAATGGAGGCTATTACGA
321 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCTTGAGAAGAATGGAGACTATTACGA
* * * * * *
84199 GAATCGATGTTTATTTTTTTTAAGGGATTAACTTTGA-TTTATGGAAAATAAGGCAAAGAAAAGA
385 GAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
84263 TTTTCATGCAAAAGAAAATCATC
450 TTTTCATGCAAAAGAAAATCATC
* * * * * * *
84286 AACATCTTTTATCCTAATAAGGCGAATGTGTTTATTGTGCCTAATCGCAAAATGAGTGAAGATCA
1 AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * *
84351 TTAGTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAAA
66 TTAGTAGAATCCATGTTTGCCTCATTTAA-GAACGAACTTAGACTTTACAAAAATTGGTGG-AAA
* * * *
84416 AATGGCTTTCTTTCAAAACCAAACCATCAATATCGTGTATCATAATGAGAAGACTATATTTATGG
129 AATGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATATTTATGG
* *
84481 T-CCTTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAA
194 TGCC-TAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
84545 ACTTTGATT-ATAAAAAATGGTGGAAAGAAATGCTTTTCTTACGACACAAAAGCATCAATGTCTT
258 ACTTTGATTCATAAAAAATGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCAT
* * *
84609 GTATCCTAATGAAGGGAATGTG-TTTCGGCTTTCCAATATTG-GAAAGAATGGAGACTATTATGA
323 GTATCCTAATGAAGGGAATGTGTTTTTGG--TTCCAATCTTGAG-AAGAATGGAGACTATTACGA
* * * *
84672 GAATTAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGATAA-AAGGCAAGGAAAAGA
385 GAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
* *
84736 TTTCCATGGAAAAGAAAATCATC
450 TTTTCATGCAAAAGAAAATCATC
* *** *
84759 AATATCATTTATCCTAATAAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG--TGTTTAT-A
1 AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
* * *** * * * *
84821 TTACTAGAATCAATGTTTATTTCATTTAAGGCAC-AACCTTAGACTTTAGAAAAATCGATGGGTA
66 TTAGTAGAATCCATGTTTGCCTCATTTAA-GAACGAA-CTTAGACTTTACAAAAATTGGT-GG-A
* * * * *
84885 AAAA-GCCTAAT-TTGCAAAACCAAAGCATTAATAT-GTTGTATCCTGATGAGAAGACTATGTTT
127 AAAATGCCT-TTCTTGCAAAACCAAAACATCAATATCG-TGTATCCTAATGAGAAGACTATATTT
84947 AT
190 AT
84949 TCATATTTGT
Statistics
Matches: 978, Mismatches: 137, Indels: 56
0.84 0.12 0.05
Matches are distributed among these distances:
469 3 0.00
470 97 0.10
471 12 0.01
472 6 0.01
473 206 0.21
474 155 0.16
475 351 0.36
476 1 0.00
479 3 0.00
480 137 0.14
481 6 0.01
482 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (472 bp):
AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCC
TTAGTAGAATCCATGTTTGCCTCATTTAAGAACGAACTTAGACTTTACAAAAATTGGTGGAAAAA
TGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATATTTATGGTG
CCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCATAAAAAATGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTGAGAAGAATGGAGACTATTACGAGAATTG
ATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA
TGCAAAAGAAAATCATC
Found at i:87894 original size:20 final size:20
Alignment explanation
Indices: 87869--87919 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
87859 TTTTAACTAG
*
87869 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTCAAAA
* *
87889 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTCAAAA
87909 ATGTATCGATA
1 ATGTATCGATA
87920 TATCTAGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTCAAAA
Found at i:87963 original size:50 final size:50
Alignment explanation
Indices: 87888--87984 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
87878 TACATTGAAA
* * *
87888 AATGTATCGATACATTCATACATGTATCGATATATCTAGGTAAAAATCAG
1 AATGTATCGATACATTCAGAAATGTATCGATACATCTAGGTAAAAATCAG
* *
87938 AATGTATCGATACATTGAGAAATGTATCGGTACATCTAGGTAAAAAT
1 AATGTATCGATACATTCAGAAATGTATCGATACATCTAGGTAAAAAT
87985 GTGACTTTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.31
Consensus pattern (50 bp):
AATGTATCGATACATTCAGAAATGTATCGATACATCTAGGTAAAAATCAG
Found at i:88822 original size:28 final size:28
Alignment explanation
Indices: 88755--89297 Score: 693
Period size: 28 Copynumber: 19.5 Consensus size: 28
88745 CACCAACTTG
*
88755 TGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
88783 TGT-GGCTTTGAAAGGGTGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
88810 TATAGGCTTTGAAAGGACGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
88838 TGTAGGCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
88866 TGTAGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
88894 TGCGGGCTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
88922 TGT-GGCTTTGAAAGGGTGGCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
88949 TATAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
88977 TGTAGGCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
89005 TGTAGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
89033 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
89061 TGTGGGCTTT-AAACGGATGCCACTAACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
* *
89089 TGTGGGCTTTGAAAAGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
89117 TATGGGCTTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
*
89145 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
89173 TATGGGCTGTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
89201 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
89229 TGTAGGTTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
89257 TGTGGGCTTTGAAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
89285 TATGGGCTTTGAA
1 TGTGGGCTTTGAA
89298 GAGATAAACG
Statistics
Matches: 450, Mismatches: 55, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
27 58 0.13
28 379 0.84
29 13 0.03
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:104414 original size:50 final size:51
Alignment explanation
Indices: 104300--104443 Score: 164
Period size: 50 Copynumber: 2.8 Consensus size: 51
104290 TTTTAACTAG
* * * *
104300 ATGTATCGATATATTGAAAAATATATTGATACATCTATGTAAAAGGACAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAGGACAGA
* * * * * *
104351 ATGCATCGATACATTCATACATGTATCGATACATCTGGGTAAAA-GATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAGGACAGA
* * *
104401 ATGTATCGATACATTGAGAAATGTATCAATACATCTCGGTAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAA
104444 TATGTGACTT
Statistics
Matches: 77, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 42 0.55
51 35 0.45
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (51 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAGGACAGA
Found at i:106592 original size:317 final size:315
Alignment explanation
Indices: 105997--106768 Score: 780
Period size: 316 Copynumber: 2.4 Consensus size: 315
105987 AATAATGATG
* * *
105997 TTATGGTGCTCAATCATGAAGAGAATAGAGATTATTATGGGAA-TC-TGTGTTT-TTATTTGATG
1 TTATGGTGCCCAATCATGAAAAGAATAGAGATTATTATGGGAATTCATGT-TTTCTTATTTAATG
* ** * ** *
106059 GACGAACTTTGATTCGAAGGAAAATGGTTGAAGGAAAAGCTTTTCTTGGGAAACTAAAA-AATCA
65 GATGAACTTTGATTATAA-GAAAATGGTGGAAGGAAAAGCTTTTCTCAGGAAACCAAAACAA-CA
* * * * * **
106123 ACACCATGTATCCTTATGAAAAACACTTGTTATGGTGCCCAACCGTGAAAAGAATAGTCTTTTAT
128 ACATCATGTATCCTAAGGAAAAACACTTGTTATGGTGCCCAACCATGAAAAGAATAGGCAATTAT
* *
106188 TATGAGAATTTGTGTTTGTCTTATTTGAGGGATAAACTTTGATTATAAGGAAAATAGTGGAAAGA
193 TATGAGAAATTGTGTTTGTCTCATTTGAGGGATAAACTTTGATTATAAGGAAAATAGTGGAAAGA
** ** * ***** * * *
106253 AAAGTTTGTTTTTGTGAACCAAAGCATTAATTTTGTGTATCCCAATAAGGAAGACTTGT
258 AAAGTTTGTCCTCATAAACCAAAGCATTAACACCATCTATCCCAAGAA-GAAAACTTGT
* * *
106312 TTATGGTGCCCAATCACGAAAAGACTAGAGATTATTATGGGAATTCATGTTTATCTCATTTAATG
1 TTATGGTGCCCAATCATGAAAAGAATAGAGATTATTATGGGAATTCATGTTT-TCTTATTTAATG
* *
106377 GATAAACTTTGACTT-TAAGAAAAATGGTGGAAAGG-AAAGCTTTTCTCAAGAAACCAAAACAAC
65 GATGAACTTTGA-TTATAAG-AAAATGGTGG-AAGGAAAAGCTTTTCTCAGGAAACCAAAACAAC
** * *
106440 AACATCATGTATCCTAAAGGGCAGA-ACTTGTTTATGGTGCCCAATCATGAAAA-AAT-GGCAAT
127 AACATCATGTATCCT-AAGGAAAAACACTTG-TTATGGTGCCCAACCATGAAAAGAATAGGCAAT
* *
106502 TATTATGA-AAGATTGTGTTTGTCTCATTTGAGGGATGAACTTTGATTCTAAGGAAAAT-GATGG
190 TATTATGAGAA-ATTGTGTTTGTCTCATTTGAGGGATAAACTTTGATTATAAGGAAAATAG-TGG
*
106565 AAAGAAAGGCTTT-TCCTCATAAACCAAAGCATTAACACCATCTATCCCAAGAAGAAAACTTGT
253 AAAGAAAAG-TTTGTCCTCATAAACCAAAGCATTAACACCATCTATCCCAAGAAGAAAACTTGT
* * * * * * * * * *
106628 TTATGTTGCCTAATCATGAAAGGAATTGAGATTATTATGAGAATCCATATTTGCCTTGTTTAAAG
1 TTATGGTGCCCAATCATGAAAAGAATAGAGATTATTATGGGAATTCATGTTT-TCTTATTTAATG
* * *
106693 GATGAATTTTAATTATATAGAAAATGGTGGAAGGAAAAGCTTTTC-CTAGGAAACCAAAGC-ACA
65 GATGAACTTTGATTATA-AGAAAATGGTGGAAGGAAAAGCTTTTCTC-AGGAAACCAAAACAACA
*
106756 ACATTATGTATCC
128 ACATCATGTATCC
106769 CAATAAAGAG
Statistics
Matches: 377, Mismatches: 63, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
315 61 0.16
316 109 0.29
317 100 0.27
318 75 0.20
319 32 0.08
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (315 bp):
TTATGGTGCCCAATCATGAAAAGAATAGAGATTATTATGGGAATTCATGTTTTCTTATTTAATGG
ATGAACTTTGATTATAAGAAAATGGTGGAAGGAAAAGCTTTTCTCAGGAAACCAAAACAACAACA
TCATGTATCCTAAGGAAAAACACTTGTTATGGTGCCCAACCATGAAAAGAATAGGCAATTATTAT
GAGAAATTGTGTTTGTCTCATTTGAGGGATAAACTTTGATTATAAGGAAAATAGTGGAAAGAAAA
GTTTGTCCTCATAAACCAAAGCATTAACACCATCTATCCCAAGAAGAAAACTTGT
Found at i:106696 original size:158 final size:156
Alignment explanation
Indices: 106290--107054 Score: 417
Period size: 158 Copynumber: 4.8 Consensus size: 156
106280 TAATTTTGTG
* * * * ** * * * *
106290 TATCCCAATAAGGAAGACTTGTTTATGGTGCCCAATCACGAAAAGACTAGAGATTATTATGGGAA
1 TATCCCAA-AAAGAAAACTTGTTTATGTTGCCTAATCATAAAAAGAATTGAGATTATTACGAGAA
* * ** * * * *
106355 TTCATGTTTATCTCATTTAATGGATAAACTTTGACTT-TA-AGAAAAATGGTGGAAAGGAAAGCT
65 TCCATATTTGCCTTATTTAA-GGATGAACTTTGA-TTCTACA-AAAAATGATGGAAAGAAAAGCT
* * ** *
106418 TTTCTCAAGAAACCAAAACAACAACATCATG
127 TTTC-CTAGAAACCAAAGCATTAACATCATC
* ** * * * * * * *
106449 TATCCTAAAGGGCAGAACTTGTTTATGGTGCCCAATCATGAAAA-AATGGCA-ATTATTATGAAA
1 TATCCCAAAAAG-AAAACTTGTTTATGTTGCCTAATCATAAAAAGAATTG-AGATTATTACGAGA
** * * * * * *
106512 GAT-TGTGTTTGTCTCATTTGAGGGATGAACTTTGATTCTA-AGGAAAATGATGGAAAGAAAGGC
64 -ATCCATATTTGCCTTATTT-AAGGATGAACTTTGATTCTACA-AAAAATGATGGAAAGAAAAGC
* *
106575 TTTTCCTCATAAACCAAAGCATTAACACCATC
126 TTTTCCT-AGAAACCAAAGCATTAACATCATC
* * * *
106607 TATCCCAAGAAGAAAACTTGTTTATGTTGCCTAATCATGAAAGGAATTGAGATTATTATGAGAAT
1 TATCCCAAAAAGAAAACTTGTTTATGTTGCCTAATCATAAAAAGAATTGAGATTATTACGAGAAT
* * * * * * * *
106672 CCATATTTGCCTTGTTTAAAGGATGAATTTTAATTATATAGAAAATGGTGGAAGGAAAAGCTTTT
66 CCATATTTGCCTTATTT-AAGGATGAACTTTGATTCTACAAAAAATGATGGAAAGAAAAGCTTTT
* * *
106737 CCTAGGAAACCAAAGCA-CAACATTATG
130 CCTA-GAAACCAAAGCATTAACATCATC
* * * *
106764 TATCCCAATAAAGAGAACTTGTTTAT-TATGCCTAATCACAAAACA-AA-TGAAGACTATTAGGA
1 TATCCCAA-AAAGAAAACTTGTTTATGT-TGCCTAATCATAAAA-AGAATTG-AGATTATTACGA
** * * * *
106826 GAATTTATATTT-CTCTTATCTAAGTGATAAACTATGATTCTA-AGAAAAATGGTGGAAA-AAAT
62 GAATCCATATTTGC-CTTATTTAAG-GATGAACTTTGATTCTACA-AAAAATGATGGAAAGAAA-
* ** * * *
106888 ATCTTTTTTTGGGAAAGCAAAGC-TTCAATATCATGC
123 AGCTTTTCCT-AGAAACCAAAGCATT-AACATCAT-C
* * * * * *
106924 -ATCCCAATAAGGATAACTTGTTTATGGTGCCCAACCATAAAAAGAATGGAGATTATTACGAGAA
1 TATCCCAA-AAAGAAAACTTGTTTATGTTGCCTAATCATAAAAAGAATTGAGATTATTACGAGAA
* * * * * *
106988 TCCATATTTGTCTCATTTGAGGAGTGAACTTTCATTCTACAAAAAATGATAGAAAGAAAGGCTTT
65 TCCATATTTGCCTTATTTAAGGA-TGAACTTTGATTCTACAAAAAATGATGGAAAGAAAAGCTTT
107053 TC
129 TC
107055 TTGGGAAACT
Statistics
Matches: 472, Mismatches: 104, Indels: 60
0.74 0.16 0.09
Matches are distributed among these distances:
157 59 0.12
158 269 0.57
159 139 0.29
160 5 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (156 bp):
TATCCCAAAAAGAAAACTTGTTTATGTTGCCTAATCATAAAAAGAATTGAGATTATTACGAGAAT
CCATATTTGCCTTATTTAAGGATGAACTTTGATTCTACAAAAAATGATGGAAAGAAAAGCTTTTC
CTAGAAACCAAAGCATTAACATCATC
Found at i:107101 original size:159 final size:158
Alignment explanation
Indices: 105997--107195 Score: 676
Period size: 159 Copynumber: 7.6 Consensus size: 158
105987 AATAATGATG
* ** * * * ** * *
105997 TTATGGTGCTCAATCATGAAGAGAATAGAGATTATTATGGGAATCTGTGTTT-T-T-ATTTGATG
1 TTATGGTGCCCAATCACAAAAAGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTT-AAG
* * * * * * * **
106059 GACGAACTTTGATTCGAAGGAAAATGGTTGAAGGAAAAGCTTTTCTTGGGAAACTAAAAAATCAA
65 GATGAACTTTGATTCTAAGAAAAATGGTGGAAAGAAAAGCTTTTCTTAGGAAACCAAAGCATCAA
* ** * *
106124 CACCATGTATCCTTATGA-AAAACACTTG-
130 CATCATGTATCCCAATGAGGAGA-ACTTGT
* *** **** *** * * *
106152 TTATGGTGCCCAACCGTGAAAAGAATAGTCTTTTATTATGAGAATTTGTGTTTGTCTTATTTGAG
1 TTATGGTGCCCAATCACAAAAAGAAT-GGAGATTATTATGAGAATCCATATTTGTCTCATTT-AA
* * * * * *
106217 GGATAAACTTTGATTATAAGGAAAATAGTGGAAAGAAAAG-TTTGTTTTTGTG-AACCAAAGCAT
64 GGATGAACTTTGATTCTAAGAAAAATGGTGGAAAGAAAAGCTTT-TCTTAG-GAAACCAAAGCAT
* ** ** *
106280 TAATTTTGTGTATCCCAATAAGGA-AGACTTGT
127 CAACATCATGTATCCCAATGAGGAGA-ACTTGT
* * * * * * *
106312 TTATGGTGCCCAATCACGAAAAGACTAGAGATTATTATGGGAATTCATGTTTATCTCATTTAATG
1 TTATGGTGCCCAATCACAAAAAGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTTAA-G
* * * * * *
106377 GATAAACTTTGACTT-TAAGAAAAATGGTGGAAAGGAAAGCTTTTCTCAAGAAACCAAAACAACA
65 GATGAACTTTGA-TTCTAAGAAAAATGGTGGAAAGAAAAGCTTTTCTTAGGAAACCAAAGCATCA
* *
106441 ACATCATGTATCCTAAAG-GGCAGAACTTGT
129 ACATCATGTATCCCAATGAGG-AGAACTTGT
** * ** *
106471 TTATGGTGCCCAATCATGAAAA-AATGGCA-ATTATTATGAAAGAT-TGTGTTTGTCTCATTTGA
1 TTATGGTGCCCAATCACAAAAAGAATGG-AGATTATTATGAGA-ATCCATATTTGTCTCATTT-A
* * * * * *
106533 GGGATGAACTTTGATTCTAAGGAAAATGATGGAAAGAAAGGCTTTTCCTCA-TAAACCAAAGCAT
63 AGGATGAACTTTGATTCTAAGAAAAATGGTGGAAAGAAAAGCTTTT-CTTAGGAAACCAAAGCAT
* * * * *
106597 TAACACCATCTATCCCAA-GAAGAAAACTTGT
127 CAACATCATGTATCCCAATGAGGAGAACTTGT
* * ** * * * **
106628 TTATGTTGCCTAATCATGAAAGGAATTGAGATTATTATGAGAATCCATATTTGCCTTGTTTAAAG
1 TTATGGTGCCCAATCACAAAAAGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTT-AAG
* * * * *
106693 GATGAATTTTAATTATATAG-AAAATGGTGGAAGGAAAAGCTTTTCCTAGGAAACCAAAGCA-CA
65 GATGAACTTTGATTCTA-AGAAAAATGGTGGAAAGAAAAGCTTTTCTTAGGAAACCAAAGCATCA
* * *
106756 ACATTATGTATCCCAATAAAGAGAACTTGT
129 ACATCATGTATCCCAATGAGGAGAACTTGT
** * * * * ** * * *
106786 TTATTATGCCTAATCACAAAACA-AATGAAGACTATTAGGAGAATTTATATTTCTCTTATCTAAG
1 TTATGGTGCCCAATCACAAAA-AGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTTAAG
* * * * * * *
106850 TGATAAACTATGATTCTAAGAAAAATGGTGGAAA-AAATATCTTTTTTTGGGAAAGCAAAGCTTC
65 -GATGAACTTTGATTCTAAGAAAAATGGTGGAAAGAAA-AGCTTTTCTTAGGAAACCAAAGCATC
* * * *
106914 AATATCATGCATCCCAATAAGGATAACTTGT
128 AACATCATGTATCCCAATGAGGAGAACTTGT
* * * *
106945 TTATGGTGCCCAACCATAAAAAGAATGGAGATTATTACGAGAATCCATATTTGTCTCATTTGAGG
1 TTATGGTGCCCAATCACAAAAAGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTTAAGG
* * * * * *
107010 AGTGAACTTTCATTCTACA-AAAAATGATAGAAAGAAAGGCTTTTCTTGGGAAACTAAAGCATCA
66 A-TGAACTTTGATTCTA-AGAAAAATGGTGGAAAGAAAAGCTTTTCTTAGGAAACCAAAGCATCA
* * ** *
107074 AAATCATGTATTCTGATGAGGAGAACTTTT
129 ACATCATGTATCCCAATGAGGAGAACTTGT
** * * * * * ** * * * *
107104 TTATTCTGCTCGACCACAGAAAGAAAGGAGATTATTACAAAAATCTATGTATGTCTCATTTAAGA
1 TTATGGTGCCCAATCACAAAAAGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTTAAG-
107169 GATG-ACTTTTTTGATTCTAATGAAAAA
65 GATGAAC---TTTGATTCTAA-GAAAAA
107196 AAGCATCAAT
Statistics
Matches: 806, Mismatches: 197, Indels: 75
0.75 0.18 0.07
Matches are distributed among these distances:
155 22 0.03
156 19 0.02
157 58 0.07
158 272 0.34
159 384 0.48
160 37 0.05
161 9 0.01
162 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
TTATGGTGCCCAATCACAAAAAGAATGGAGATTATTATGAGAATCCATATTTGTCTCATTTAAGG
ATGAACTTTGATTCTAAGAAAAATGGTGGAAAGAAAAGCTTTTCTTAGGAAACCAAAGCATCAAC
ATCATGTATCCCAATGAGGAGAACTTGT
Found at i:107870 original size:158 final size:159
Alignment explanation
Indices: 107669--108018 Score: 411
Period size: 158 Copynumber: 2.2 Consensus size: 159
107659 GATTTTACAA
* * * * * * *
107669 AAAATGGT-GAAAAGAAAACCTTTTATTAGGATACCAAA-GATCAATACCATATATTCCAGA-AA
1 AAAATGGTAG-AAAGAAAAGCTTTTCTCAGGAAACCAAATCATCAACACCATATATCCCA-ATAA
** *
107731 GGAGAACTTATTTATGGTGCCTGATCATGAAAAGAAAGGAGATTATTACGAGAATCTACATTTGT
64 GGAGAACTTATTTATGGTGCCCAATCATGAAAAGAAAGAAGATTATTACGAGAATCTACATTTGT
*
107796 CTAATTT-AAGGATAAACTTTGATTCAAAGG
129 CTAATTTGAAGGATAAACTTTGAGTCAAAGG
* * * * *
107826 AAAATTGTAGAAAGACAAGCTTTTCTCAGGAAACCAAATCATCAACATCATGTATCCCAATGAGG
1 AAAATGGTAGAAAGAAAAGCTTTTCTCAGGAAACCAAATCATCAACACCATATATCCCAATAAGG
* * * * ***
107891 AGAACTTGTTTTTGGTGCCCAATCATGAAAAGAACGAAGATTATTATGAGAATCTGGGTTTGTCT
66 AGAACTTATTTATGGTGCCCAATCATGAAAAGAAAGAAGATTATTACGAGAATCTACATTTGTCT
* * *
107956 CATTTGAGGGATAAACTTTGAGTCTAAGG
131 AATTTGAAGGATAAACTTTGAGTCAAAGG
*
107985 AAAATGGTAGAAAGAAAAGCTTTTCTTAGGAAAC
1 AAAATGGTAGAAAGAAAAGCTTTTCTCAGGAAAC
108019 TAAAGTTTTA
Statistics
Matches: 160, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 31 0.19
158 78 0.49
159 51 0.32
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.28
Consensus pattern (159 bp):
AAAATGGTAGAAAGAAAAGCTTTTCTCAGGAAACCAAATCATCAACACCATATATCCCAATAAGG
AGAACTTATTTATGGTGCCCAATCATGAAAAGAAAGAAGATTATTACGAGAATCTACATTTGTCT
AATTTGAAGGATAAACTTTGAGTCAAAGG
Found at i:113574 original size:28 final size:29
Alignment explanation
Indices: 113505--113576 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 29
113495 TTCTTCTTTA
* *
113505 TTGATTTCTTTTCCTTTGAAATTTCTTGC
1 TTGATTTCATTTCCTTTCAAATTTCTTGC
* *
113534 TT-ATTTCGTTTCCTTTCATATTTCTTG-
1 TTGATTTCATTTCCTTTCAAATTTCTTGC
*
113561 TTGATTTCACTTCCTT
1 TTGATTTCATTTCCTT
113577 GATCTTTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.05
28 33 0.89
29 2 0.05
ACGTcount: A:0.12, C:0.19, G:0.08, T:0.60
Consensus pattern (29 bp):
TTGATTTCATTTCCTTTCAAATTTCTTGC
Found at i:117348 original size:157 final size:158
Alignment explanation
Indices: 117007--117551 Score: 397
Period size: 159 Copynumber: 3.4 Consensus size: 158
116997 GTTTTATGAG
* * * * *
117007 AAGAATGGACATTATTACGA-GAATCCATATGTGTCTCATATGAGGGACAAACTTTGATTGTATA
1 AAGAATGGAGATTATTAC-ATGAATCCATGTTTGTCTCATTTGAGGGACAAACTTTGATTTTA-A
* * * * * * *
117071 G-AAAATGG-AGAAAAAGAAAGCTTTT-TTTTGCAAAACTAAAGCATCAATATCATATAT-CTCA
64 GCAAAAAGGTGGAATAA-AAAGCTTTTCTTGTG--AAACCAAAGCATCAATATTATGTATCCT-A
* * * *
117132 ATGAGGAGACTGTG-TTTATGGTGCCTAA-T-CATGA
125 ATTAGGAGAATGTGCTTCAT-G-GCCAAATTACA-GA
* * *
117166 AACGAATGGAGATTTTTAC-TAGAATCTATGTTTGTCTCATTTGAGGGACAAAATTTGATTTTAA
1 AA-GAATGGAGATTATTACAT-GAATCCATGTTTGTCTCATTTGAGGGACAAACTTTGATTTTAA
*
117230 GCAAAAAGGTGGGAA-AAAAAG--TTT-TTGTGCTAAACCAAAGCATCAATATTGTGTTAT-CTA
64 GCAAAAAGGT-GGAATAAAAAGCTTTTCTTGTG--AAACCAAAGCATCAATATTATG-TATCCTA
* * *
117290 ATTAGTAGAAT-T-CGTT-ATGGTCCCCAATTACATA
125 ATTAGGAGAATGTGC-TTCATGG--CCAAATTACAGA
* * * * ** * *
117324 AAGAATGGAGATTATTACATGAATCCAAGTTTGTGTGATATGACAGACAAACTTTTATTTTAAAC
1 AAGAATGGAGATTATTACATGAATCCATGTTTGTCTCATTTGAGGGACAAACTTTGATTTTAAGC
* * * * * *
117389 AGAATGGTGGAATAGAAAGCTTTTCTTGTGAAACCAAAGCGTCAATATTATGTATCCTAGTTTGG
66 AAAAAGGTGGAATAAAAAGCTTTTCTTGTGAAACCAAAGCATCAATATTATGTATCCTAATTAGG
*
117454 AGAATGTGTCTTCATGGCCAAATTATAGA
131 AGAATGTG-CTTCATGGCCAAATTACAGA
* * * *
117483 AAGAATGGAGATTATTATGA-GAAACCATGTTTGTCTCATTTGAGGGACAAACTATGATTCTAAG
1 AAGAATGGAGATTATTA-CATGAATCCATGTTTGTCTCATTTGAGGGACAAACTTTGATTTTAAG
*
117547 GAAAA
65 CAAAA
117552 TGTTGAGAAG
Statistics
Matches: 305, Mismatches: 57, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
155 1 0.00
156 5 0.02
157 71 0.23
158 73 0.24
159 77 0.25
160 68 0.22
161 7 0.02
162 3 0.01
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (158 bp):
AAGAATGGAGATTATTACATGAATCCATGTTTGTCTCATTTGAGGGACAAACTTTGATTTTAAGC
AAAAAGGTGGAATAAAAAGCTTTTCTTGTGAAACCAAAGCATCAATATTATGTATCCTAATTAGG
AGAATGTGCTTCATGGCCAAATTACAGA
Found at i:117792 original size:158 final size:155
Alignment explanation
Indices: 117490--117925 Score: 406
Period size: 158 Copynumber: 2.7 Consensus size: 155
117480 AGAAAGAATG
* * ** * * *
117490 GAGATTATTATGAGAAACCATGTTTGTCTCATTTGAGGGACAAACTATGATTCTAAGGAAAATGT
1 GAGATTATTATGAG-AATCAAGTTTGTCTCATTTGAGGGATGAACTTTGGTTCTAAGGAAAATGA
* * * * * * * *
117555 TGAGAAGAAAAACCTTTCTTTTGAAACTAAGGCATGAACATCATATATCCCAATCAAGAAAACTT
65 TGA-AAGAAAAGCTTTTCTTGTGAAACTAA-GCATCAATATCATGTAACCCAATCAAGAAAACAT
*
117620 ATTTATGATGCCCAATCATCAAAAAAAAT
128 ATTTATGATACCCAATCAT-AAAAAAAAT
* * * * *
117649 AGAGATTTTTATGAGAATTCAGGTTTTTCTCATTTGAGGGATGAACTTTGGTTGTAAGAAAAATG
1 -GAGATTATTATGAGAA-TCAAGTTTGTCTCATTTGAGGGATGAACTTTGGTTCTAAGGAAAATG
* * * *
117714 GTGAAA-AAAAGCTTTTCTTGTGAAACATAAGCAACAATATCATGTAACCTAATCAAGAGAACAT
64 ATGAAAGAAAAGCTTTTCTTGTGAAAC-TAAGCATCAATATCATGTAACCCAATCAAGAAAACAT
* * * *
117778 GTTTATGGTACCCAATCCTAAAAATAAT
128 ATTTATGATACCCAATCATAAAAAAAAT
* ** * * * *
117806 GGGAATTATTACAAGAATCAAAGTTTGTCTTATTTGAGAGATGAATTTTGGTTCTAAGGAAAATA
1 GAG-ATTATTATGAGAATC-AAGTTTGTCTCATTTGAGGGATGAACTTTGGTTCTAAGGAAAATG
* * * *
117871 ATGGAAAGAAAAGTTTTTCTTGCGAAACTAAAGCATCAATGTCATGTATCCCAAT
64 AT-GAAAGAAAAGCTTTTCTTGTGAAACT-AAGCATCAATATCATGTAACCCAAT
117926 GAGTAGTACG
Statistics
Matches: 223, Mismatches: 46, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
156 4 0.02
157 56 0.25
158 63 0.28
159 46 0.21
160 54 0.24
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (155 bp):
GAGATTATTATGAGAATCAAGTTTGTCTCATTTGAGGGATGAACTTTGGTTCTAAGGAAAATGAT
GAAAGAAAAGCTTTTCTTGTGAAACTAAGCATCAATATCATGTAACCCAATCAAGAAAACATATT
TATGATACCCAATCATAAAAAAAAT
Found at i:120282 original size:159 final size:157
Alignment explanation
Indices: 119546--120576 Score: 544
Period size: 159 Copynumber: 6.5 Consensus size: 157
119536 TATTTGAGAG
* * * * * * *
119546 ATGAACATAGATTTTAAGGAAAATGGTGAAAAGAAAAGCTTTTCTTGTAAAACCTAAGCAACAAT
1 ATGAACTTTGATTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATC-A-
* ** * *
119611 ATCATGTATCCCAATAAG-GAGAATGTGTTATTG-T-CCACAATCATGTAAAGAATGGAGATTAT
64 ATCATTTATCCCAATAAGAG-GAATGCATTTTTGATGCC-CAATCATGAAAAGAATGGAGATTAT
* * * * * *
119673 TTCAAGAATCCA-ATTTATCTGATATGATG-G
127 TACAAGAATCCATATTTGTCTCAT-TTAAGCA
* * * ** * *** *
119703 ATGAACTTTTATTTTATA-GAGAATGGTAAAAAGAAAAACTTTTCTTATGAAACCAAAGTATCAA
1 ATGAACTTTGATTGTA-AGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAA
* * * * * ** *** *
119767 TACCATGTATTCTAGT--GTGGAAAATGTGTTTTTG-TGGTTGAATCAT-AGAAGGAATGGAGAT
65 T--CATTTATCCCAATAAGAGG--AATGCATTTTTGAT-GCCCAATCATGA-AAAGAATGGAGAT
** * * * **
119828 TACAACAAGAATCTATGTTTGTCTCATTTGAGGG
124 TATTACAAGAATCCATATTTGTCTCATTTAAGCA
* * * * * * * *
119862 TTAAACTATGATTATACGAAAAATGGTGGAAAGAAAAG-TTGTTTTTGCAAGACCAAAGCATCGA
1 ATGAACTTTGATTGTAAGGAAAATGGTGGAAAGAAAAGCTT-TTCTTGCAAAACCAAAGCATC-A
* * * * * *
119926 TATCATATATCCCAATCAAGA-AAACTAC-TTTCT-AGTGACTAATCATGAAAA-AATGGAGATT
64 -ATCATTTATCCCAAT-AAGAGGAA-TGCATTTTTGA-TGCCCAATCATGAAAAGAATGGAGATT
* * * * * * **
119987 TTTACAAGGATTCATGTATGTCTCATTTGAGGG
125 ATTACAAGAATCCATATTTGTCTCATTTAAGCA
* * ** * * * *
120020 ATAAACTTTGATTGTAAGGAAAATGGTGAAAAGAAAAGCTTTTCTTGTGATAGCTAAGAATCCAT
1 ATGAACTTTGATTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT-CA-
* * * * *
120085 ATCATTTATCACAATCAA-AAGAA--CATGTTTATGGTGCCCAATCCTAAAAAGAATGGAGATTA
64 ATCATTTATCCCAAT-AAGAGGAATGCAT-TTT-TGATGCCCAATCATGAAAAGAATGGAGATTA
*
120147 TTACAAGAATCCATATTTGTTTCATTTAAGCA
126 TTACAAGAATCCATATTTGTCTCATTTAAGCA
* * **
120179 ATGAACTTTGATTCTAAGGAAAATGATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATTGAT
1 ATGAACTTTGATTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAAT
*
120244 GCCATTTATCCCAATAAGAGGAATGCATTTTTGTTGCCCAATCATGAAAAGAATGGAGATTATTA
66 --CATTTATCCCAATAAGAGGAATGCATTTTTGATGCCCAATCATGAAAAGAATGGAGATTATTA
** * * *
120309 TGAGAATTCATGTTTGTCTCATTTGAAGGTA
129 CAAGAATCCATATTTGTCTCATTT-AA-GCA
** * * * * *
120340 A--AAGATTGATTTTTAAGGAAAATGGTGGTAAGAAAAGCTTTTATTGCAAAAGCAAAACATCAA
1 ATGAACTTTGA-TTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAA
* * * ** ** * *
120403 T-ATCTTATCCCAATAGGAGATAATGCATTTATGATGCATAATCATGAATGGTATAGAGATTATT
65 TCAT-TTATCCCAATAAGAG-GAATGCATTTTTGATGCCCAATCATGAAAAGAATGGAGATTATT
* *
120467 AAAAGAATCCATATTT-ACATCATTT--GCA
128 ACAAGAATCCATATTTGTC-TCATTTAAGCA
* * * *
120495 GGATGAACTTTGGTTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTTTTGCTAAACCAATGCATCA
1 --ATGAACTTTGATTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCA
*
120560 GCATCATGTATCCCAAT
64 --ATCATTTATCCCAAT
120577 GAGTAGTACA
Statistics
Matches: 668, Mismatches: 158, Indels: 93
0.73 0.17 0.10
Matches are distributed among these distances:
155 7 0.01
156 3 0.00
157 79 0.12
158 210 0.31
159 292 0.44
160 66 0.10
161 10 0.01
162 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.31
Consensus pattern (157 bp):
ATGAACTTTGATTGTAAGGAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAAT
CATTTATCCCAATAAGAGGAATGCATTTTTGATGCCCAATCATGAAAAGAATGGAGATTATTACA
AGAATCCATATTTGTCTCATTTAAGCA
Found at i:125445 original size:12 final size:12
Alignment explanation
Indices: 125428--125461 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
125418 TGAGTCAACT
*
125428 TCATCATTATTA
1 TCATCATCATTA
125440 TCATCATCATTA
1 TCATCATCATTA
*
125452 TCTTCATCAT
1 TCATCATCAT
125462 CTTTGATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (12 bp):
TCATCATCATTA
Found at i:125446 original size:15 final size:15
Alignment explanation
Indices: 125428--125462 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
125418 TGAGTCAACT
125428 TCATCATTAT-TATCA
1 TCATCATTATCT-TCA
125443 TCATCATTATCTTCA
1 TCATCATTATCTTCA
125458 TCATC
1 TCATC
125463 TTTGATGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 18 0.95
16 1 0.05
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.46
Consensus pattern (15 bp):
TCATCATTATCTTCA
Found at i:127171 original size:19 final size:19
Alignment explanation
Indices: 127127--127182 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
127117 CTACCAGTTT
**
127127 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
127147 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
127166 CATGTATCGATACAATG
1 CATGTATCGATACAATG
127183 TATCGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:127185 original size:13 final size:13
Alignment explanation
Indices: 127167--127193 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
127157 TACAATGAAC
127167 ATGTATCGATACA
1 ATGTATCGATACA
127180 ATGTATCGATACA
1 ATGTATCGATACA
127193 A
1 A
127194 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:127204 original size:20 final size:21
Alignment explanation
Indices: 127179--127234 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
127169 GTATCGATAC
127179 AATGTATCGATACA-AAGCAT
1 AATGTATCGATACATAAGCAT
* *
127199 AATGTATCGATACATTAGGAT
1 AATGTATCGATACATAAGCAT
127220 -ATGTATCGATACATA
1 AATGTATCGATACATA
127235 CAAAGGTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 28 0.88
21 4 0.12
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (21 bp):
AATGTATCGATACATAAGCAT
Found at i:130534 original size:21 final size:21
Alignment explanation
Indices: 130510--130549 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
130500 GTGCTTAATT
130510 ATATG-TGAGTTTGATGTTTAG
1 ATATGTTG-GTTTGATGTTTAG
*
130531 ATATGTTGTTTTGATGTTT
1 ATATGTTGGTTTGATGTTT
130550 TTGAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (21 bp):
ATATGTTGGTTTGATGTTTAG
Found at i:131788 original size:15 final size:16
Alignment explanation
Indices: 131768--131797 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
131758 TTGACTTTTG
131768 TGCTTGTA-TTGAATA
1 TGCTTGTACTTGAATA
131783 TGCTTGTACTTGAAT
1 TGCTTGTACTTGAAT
131798 TTCTTTGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (16 bp):
TGCTTGTACTTGAATA
Found at i:132179 original size:25 final size:25
Alignment explanation
Indices: 132147--132194 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
132137 AGGGGGATAA
*
132147 TTTGTTAAGGGAGAGTATTAAATAT
1 TTTGTTAAGGGAGAGTACTAAATAT
*
132172 TTTGTTAAGGGGGAGTACTAAAT
1 TTTGTTAAGGGAGAGTACTAAAT
132195 TAAAATTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (25 bp):
TTTGTTAAGGGAGAGTACTAAATAT
Found at i:132857 original size:20 final size:19
Alignment explanation
Indices: 132834--132881 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
132824 ACACCTATAT
*
132834 GTATCGATAGATGTTGCTTA
1 GTATCGATACATGTT-CTTA
* *
132854 GTATCAATACATGTTCTTG
1 GTATCGATACATGTTCTTA
132873 GTATCGATA
1 GTATCGATA
132882 TGTATTGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (19 bp):
GTATCGATACATGTTCTTA
Found at i:133359 original size:16 final size:18
Alignment explanation
Indices: 133338--133372 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
133328 TCTTAGAGGC
133338 ATTTC-TTGT-TTGTAAA
1 ATTTCTTTGTGTTGTAAA
133354 ATTTCTTTGTGTTGTAAA
1 ATTTCTTTGTGTTGTAAA
133372 A
1 A
133373 GGTTGTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 4 0.24
18 8 0.47
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (18 bp):
ATTTCTTTGTGTTGTAAA
Found at i:134375 original size:28 final size:29
Alignment explanation
Indices: 134332--134413 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 29
134322 ATTAATAATT
*
134332 AAGAAAGATC-AAGGAAGTGAAATCAA-C
1 AAGAAATATCAAAGGAAGTGAAATCAAGC
* *
134359 AAGAAATATGAAAGGAAATGAAAT-AAGC
1 AAGAAATATCAAAGGAAGTGAAATCAAGC
* *
134387 AAGAAATATCTAAGGAAGAGAAATCAA
1 AAGAAATATCAAAGGAAGTGAAATCAA
134414 TGAAGAGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
27 10 0.22
28 33 0.73
29 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.21, T:0.13
Consensus pattern (29 bp):
AAGAAATATCAAAGGAAGTGAAATCAAGC
Found at i:136866 original size:33 final size:32
Alignment explanation
Indices: 136803--136866 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
136793 TTAACTATTT
*
136803 TGTATCAATACACACAATATGTATCCATACAA
1 TGTATCAATACACACAAAATGTATCCATACAA
* * *
136835 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCAATACA-CACAAAATGTATCCATACA
136867 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (32 bp):
TGTATCAATACACACAAAATGTATCCATACAA
Found at i:142940 original size:11 final size:11
Alignment explanation
Indices: 142926--142953 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
142916 ATTTAGGCTC
142926 AAATTCTGGAA
1 AAATTCTGGAA
142937 AAATTCTGGAA
1 AAATTCTGGAA
142948 AAATTC
1 AAATTC
142954 CAAAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (11 bp):
AAATTCTGGAA
Found at i:143502 original size:20 final size:22
Alignment explanation
Indices: 143469--143513 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
143459 GCAGTAGTCA
*
143469 CCAGGTCACGACC-GGC-ACCC
1 CCAGGTCACAACCGGGCAACCC
*
143489 CCAGGTCGCAACCGGGCAACCC
1 CCAGGTCACAACCGGGCAACCC
143511 CCA
1 CCA
143514 CACTAGCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 3 0.14
22 7 0.33
ACGTcount: A:0.22, C:0.49, G:0.24, T:0.04
Consensus pattern (22 bp):
CCAGGTCACAACCGGGCAACCC
Found at i:145487 original size:13 final size:13
Alignment explanation
Indices: 145469--145493 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
145459 AGATTGCACA
145469 GTATCGATACATT
1 GTATCGATACATT
145482 GTATCGATACAT
1 GTATCGATACAT
145494 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:145506 original size:20 final size:21
Alignment explanation
Indices: 145481--145533 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
145471 ATCGATACAT
*
145481 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
145501 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
145522 TGTATCGATACA
1 TGTATCGATACA
145534 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:151899 original size:21 final size:21
Alignment explanation
Indices: 151875--151915 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
151865 GGAGGAGAAA
*
151875 AAGGAGAGAT-AGTAGAGATAG
1 AAGGAAAGATAAG-AGAGATAG
151896 AAGGAAAGATAAGAGAGATA
1 AAGGAAAGATAAGAGAGATA
151916 ATAAAAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.54, C:0.00, G:0.34, T:0.12
Consensus pattern (21 bp):
AAGGAAAGATAAGAGAGATAG
Found at i:161626 original size:52 final size:52
Alignment explanation
Indices: 161569--161677 Score: 146
Period size: 52 Copynumber: 2.1 Consensus size: 52
161559 GTTAATAATT
* * * *
161569 GAATTGTATCGTTACATGGTAAATTGTATCGATATATTGAGCTCAACGGCTA
1 GAATTGTATCGATACATGATAAATTGTATCGATACATTGAGCCCAACGGCTA
* * * *
161621 TAATTGTATTGATACATTATGAATTGTATCGATACATTGAGCCCAACGGCTA
1 GAATTGTATCGATACATGATAAATTGTATCGATACATTGAGCCCAACGGCTA
161673 GAATT
1 GAATT
161678 TCAAATGCAT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (52 bp):
GAATTGTATCGATACATGATAAATTGTATCGATACATTGAGCCCAACGGCTA
Found at i:162576 original size:33 final size:33
Alignment explanation
Indices: 162515--162694 Score: 260
Period size: 33 Copynumber: 5.6 Consensus size: 33
162505 CTTATGTGCA
* * * *
162515 CTTTAAAGAAAGGTTACCACTGATTTGTGTGGG
1 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
*
162548 CTTTAGAGAAGGGTTGCCACCGACTTGTGTGGG
1 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
*
162581 CTTTAGA-AA-GGTTGCCAATGACTTGTGTGGG
1 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
162612 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
1 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
* *
162645 CTTTAGAAAAGGGTTGCCACTGACTTGTGTGAG
1 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
162678 CTTT--AGAAGGGTTGCCA
1 CTTTAGAGAAGGGTTGCCA
162695 ATGGCTTTAG
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
31 39 0.29
32 4 0.03
33 91 0.68
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (33 bp):
CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGG
Found at i:162607 original size:64 final size:64
Alignment explanation
Indices: 162521--162694 Score: 271
Period size: 64 Copynumber: 2.7 Consensus size: 64
162511 TGCACTTTAA
* *
162521 AGAAAGGTTACCACTGATTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
1 AGAAAGGTTGCCACTGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
* *
162585 AGAAAGGTTGCCAATGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACTGACTTGTGTGGGCTTT
1 AGAAAGGTTGCCACTGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
*
162649 AGAAAAGGGTTGCCACTGACTTGTGTGAGCTTT--AGAAGGGTTGCCA
1 AG-AAA-GGTTGCCACTGACTTGTGTGGGCTTTAGAGAAGGGTTGCCA
162695 ATGGCTTTAG
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
64 75 0.74
65 3 0.03
66 24 0.24
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (64 bp):
AGAAAGGTTGCCACTGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
Found at i:162634 original size:97 final size:97
Alignment explanation
Indices: 162515--162697 Score: 294
Period size: 97 Copynumber: 1.9 Consensus size: 97
162505 CTTATGTGCA
* * *
162515 CTTTAAAGAAAGGTTACCACTGATTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGG
1 CTTTAAAGAAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGA
162580 GCTTTAGAAAGGTTGCCAATGACTTGTGTGGG
66 GCTTTAGAAAGGTTGCCAATGACTTGTGTGGG
* * * *
162612 CTTTAGAGAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACTGACTTGTGTGA
1 CTTTAAAGAAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGA
*
162677 GCTTTAGAAGGGTTGCCAATG
66 GCTTTAGAAAGGTTGCCAATG
162698 GCTTTAGAAG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
97 78 1.00
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (97 bp):
CTTTAAAGAAAGGTTACCACTGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGA
GCTTTAGAAAGGTTGCCAATGACTTGTGTGGG
Found at i:162811 original size:32 final size:32
Alignment explanation
Indices: 162736--162900 Score: 128
Period size: 33 Copynumber: 5.2 Consensus size: 32
162726 TTGTGGACTT
162736 AAAAAGATGCCACAGAGTTGTGGACTTTAAAAGA
1 AAAAAG-TGCCACAGAGTTGTGGAC-TTAAAAGA
*
162770 AAAAAGTGCCACAGAGTTGTGGACTTAAAAGG
1 AAAAAGTGCCACAGAGTTGTGGACTTAAAAGA
* * *
162802 AAAATGTGCCA-TGAAGCTGTGGACTT-AAAG-
1 AAAAAGTGCCACAG-AGTTGTGGACTTAAAAGA
* * *
162832 ---AGGTGCCACGGAGATGTGGACTTGAAAAGA
1 AAAAAGTGCCACAGAGTTGTGGACTT-AAAAGA
* * **
162862 AAAAAGAAGCCAC-GAAGTTATGGACTTTGAAGA
1 AAAAAG-TGCCACAG-AGTTGTGGACTTAAAAGA
162895 AAAAAG
1 AAAAAG
162901 AAAGAAAAAG
Statistics
Matches: 108, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
27 18 0.17
28 1 0.01
29 4 0.04
31 5 0.05
32 28 0.26
33 31 0.29
34 21 0.19
ACGTcount: A:0.42, C:0.12, G:0.27, T:0.19
Consensus pattern (32 bp):
AAAAAGTGCCACAGAGTTGTGGACTTAAAAGA
Found at i:162874 original size:34 final size:33
Alignment explanation
Indices: 162836--162902 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
162826 TTAAAGAGGT
* *
162836 GCCACGGAGATGTGGAC-TTGAAAAGAAAAAAGAA
1 GCCACGAAGATATGGACTTTG--AAGAAAAAAGAA
*
162870 GCCACGAAGTTATGGACTTTGAAGAAAAAAGAA
1 GCCACGAAGATATGGACTTTGAAGAAAAAAGAA
162903 AGAAAAAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 12 0.41
34 14 0.48
35 3 0.10
ACGTcount: A:0.46, C:0.12, G:0.27, T:0.15
Consensus pattern (33 bp):
GCCACGAAGATATGGACTTTGAAGAAAAAAGAA
Found at i:164002 original size:23 final size:21
Alignment explanation
Indices: 163976--164058 Score: 53
Period size: 23 Copynumber: 3.7 Consensus size: 21
163966 ATGACCAGAT
163976 TTTTTCTCTTCTTCTTCACTAAG
1 TTTTT-TCTTCTT-TTCACTAAG
* * *
163999 TTTTTTCTT-TTTATGACCAGAATT
1 TTTTTTCTTCTTT-TCA-C-TAA-G
164023 TTTTTCTCTTCTTTTTCACTAAG
1 TTTTT-TCTTC-TTTTCACTAAG
164046 TTTTTTCTT-TTTT
1 TTTTTTCTTCTTTT
164059 GAAAAGAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 17
0.67 0.09 0.24
Matches are distributed among these distances:
20 5 0.11
21 4 0.09
22 9 0.19
23 12 0.26
24 7 0.15
25 5 0.11
26 2 0.04
27 3 0.06
ACGTcount: A:0.13, C:0.18, G:0.05, T:0.64
Consensus pattern (21 bp):
TTTTTTCTTCTTTTCACTAAG
Found at i:164008 original size:45 final size:47
Alignment explanation
Indices: 163957--164057 Score: 179
Period size: 47 Copynumber: 2.2 Consensus size: 47
163947 AGCTTGTGTC
163957 TTTCTTTTTATGACCAG-A-TTTTTTCTCTTCTTCTTCACTAAGTTT
1 TTTCTTTTTATGACCAGAATTTTTTTCTCTTCTTCTTCACTAAGTTT
*
164002 TTTCTTTTTATGACCAGAATTTTTTTCTCTTCTTTTTCACTAAGTTT
1 TTTCTTTTTATGACCAGAATTTTTTTCTCTTCTTCTTCACTAAGTTT
164049 TTTCTTTTT
1 TTTCTTTTT
164058 TGAAAAGAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
45 17 0.32
46 1 0.02
47 35 0.66
ACGTcount: A:0.15, C:0.18, G:0.06, T:0.61
Consensus pattern (47 bp):
TTTCTTTTTATGACCAGAATTTTTTTCTCTTCTTCTTCACTAAGTTT
Found at i:164049 original size:24 final size:24
Alignment explanation
Indices: 163975--164053 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
163965 TATGACCAGA
*
163975 TTTTTTCTCTTCTTCTTCACTAAG
1 TTTTTTCTCTTCTTTTTCACTAAG
* * * *
163999 -TTTTT-TCTT-TTTATGACCAGAAT
1 TTTTTTCTCTTCTTTTTCA-C-TAAG
164022 TTTTTTCTCTTCTTTTTCACTAAG
1 TTTTTTCTCTTCTTTTTCACTAAG
164046 TTTTTTCT
1 TTTTTTCT
164054 TTTTTGAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
21 4 0.10
22 5 0.12
23 7 0.17
24 15 0.37
25 5 0.12
26 5 0.12
ACGTcount: A:0.14, C:0.19, G:0.05, T:0.62
Consensus pattern (24 bp):
TTTTTTCTCTTCTTTTTCACTAAG
Found at i:171678 original size:76 final size:76
Alignment explanation
Indices: 171581--171812 Score: 297
Period size: 76 Copynumber: 3.1 Consensus size: 76
171571 AAGTTAGAGA
* * *
171581 AAAAAAACATAATAGGGAATATGTAGTTTCTAAAATTTCTAG-CAACAACCAAAACAAACTAATA
1 AAAAGAACCTAATAGGGAATATGTAGTTTCTAAAATTT-TAGCCAACAGCCAAAACAAACTAATA
171645 ATAGGTTGAAAG
65 ATAGGTTGAAAG
* * *
171657 AAAAGAACCTAATAAGGAATATGTAGTTTCTAAAATTTTCGCCAACAGCCAAAACAAACTAATGA
1 AAAAGAACCTAATAGGGAATATGTAGTTTCTAAAATTTTAGCCAACAGCCAAAACAAACTAATAA
* *
171722 TAGGCTGAAAA
66 TAGGTTGAAAG
* * * * * * *
171733 AAAAGAACCTGATGGGGAAAATATAGTTTCTAAAATTTTTGCCAATAGCCAAAACAAACTGATAA
1 AAAAGAACCTAATAGGGAATATGTAGTTTCTAAAATTTTAGCCAACAGCCAAAACAAACTAATAA
171798 TAGGTT-AAAGG
66 TAGGTTGAAA-G
171809 AAAA
1 AAAA
171813 AAGAATGATG
Statistics
Matches: 135, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
75 5 0.04
76 130 0.96
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (76 bp):
AAAAGAACCTAATAGGGAATATGTAGTTTCTAAAATTTTAGCCAACAGCCAAAACAAACTAATAA
TAGGTTGAAAG
Found at i:171822 original size:76 final size:76
Alignment explanation
Indices: 171573--171838 Score: 283
Period size: 76 Copynumber: 3.5 Consensus size: 76
171563 TTGATGATAA
* * * *
171573 GTTAGAGAAAAAA-AACATAATAGGGAATATGTAGTTTCTAAAATTTCTAG-CAACAACCAAAAC
1 GTTAAAGAAAAAAGAAC-TGATGGGGAATATGTAGTTTCTAAAATTT-TAGCCAACAGCCAAAAC
171636 AAACTAATAATAG
64 AAACTAATAATAG
* ** *
171649 GTTGAAAG--AAAAGAACCTAATAAGGAATATGTAGTTTCTAAAATTTTCGCCAACAGCCAAAAC
1 GTT-AAAGAAAAAAGAA-CTGATGGGGAATATGTAGTTTCTAAAATTTTAGCCAACAGCCAAAAC
*
171712 AAACTAATGATAG
64 AAACTAATAATAG
* * * * * *
171725 GCTGAA-AAAAAAGAACCTGATGGGGAAAATATAGTTTCTAAAATTTTTGCCAATAGCCAAAACA
1 GTTAAAGAAAAAAGAA-CTGATGGGGAATATGTAGTTTCTAAAATTTTAGCCAACAGCCAAAACA
*
171789 AACTGATAATAG
65 AACTAATAATAG
*
171801 GTTAAAGGAAAAAAGAA-TGATGGGGAATATGTGGTTTC
1 GTTAAA-GAAAAAAGAACTGATGGGGAATATGTAGTTTC
171839 CTAATTTCCT
Statistics
Matches: 161, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
75 8 0.05
76 140 0.87
77 4 0.02
78 9 0.06
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (76 bp):
GTTAAAGAAAAAAGAACTGATGGGGAATATGTAGTTTCTAAAATTTTAGCCAACAGCCAAAACAA
ACTAATAATAG
Found at i:173643 original size:79 final size:80
Alignment explanation
Indices: 173557--173824 Score: 238
Period size: 79 Copynumber: 3.4 Consensus size: 80
173547 ACATTCCCCG
* * * *
173557 ATGAAAAATTTAATATTTTGGAGATAAAAATG-GGATTGGAGTATCTCCTCGGAAATAATAGGGT
1 ATGAAAAATTTAATATTTTGGAAATAAAAACGAGG-TTGGAGTATCCCCTCGAAAATAATAGGGT
173621 TGGAGTATCCCCGATT
65 TGGAGTATCCCCGATT
* ** * * *
173637 AT-AAAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAATGGGGTT
1 ATGAAAAATTTAATATTTTGGAAATAAAAACGAGGTTGGAGTATCCCCTCGAAAATAATAGGGTT
*
173701 GGAGTATCCGCGATT
66 GGAGTATCCCCGATT
* ** * ** * * * * * **
173716 GTGAAAAA-TCGATGTTTTAAAAATAAAATCGGGGTTAGAGTATCCCATCAAAAATAACGGGGTT
1 ATGAAAAATTTAATATTTTGGAAATAAAAACGAGGTTGGAGTATCCCCTCGAAAATAATAGGGTT
*
173780 GGAGTATCCCCGATG
66 GGAGTATCCCCGATT
* * * *
173795 GTGGAAAA-TTAGTATTTTAGAAATAAAAAC
1 ATGAAAAATTTAATATTTTGGAAATAAAAAC
173825 TTGAATGAAA
Statistics
Matches: 155, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 146 0.94
80 9 0.06
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (80 bp):
ATGAAAAATTTAATATTTTGGAAATAAAAACGAGGTTGGAGTATCCCCTCGAAAATAATAGGGTT
GGAGTATCCCCGATT
Found at i:179251 original size:177 final size:177
Alignment explanation
Indices: 178955--179489 Score: 1061
Period size: 177 Copynumber: 3.0 Consensus size: 177
178945 ATTTCGATGA
178955 CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
1 CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
179020 AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
66 AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
*
179085 CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCAAATGGGAGTAT
131 CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCGAATGGGAGTAT
179132 CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
1 CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
179197 AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
66 AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
179262 CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCGAATGGGAGTAT
131 CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCGAATGGGAGTAT
179309 CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
1 CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
179374 AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
66 AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
179439 CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCGAATGGGAGTAT
131 CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCGAATGGGAGTAT
179486 CTTC
1 CTTC
179490 CATGCTCGTA
Statistics
Matches: 357, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
177 357 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (177 bp):
CTTCTAAAAGGGGGCATGGTTTTAAATGGGAGGTCACTAAGCTTCACTATATAAGGTTTAGGTCA
AACCTCTAAATTGTTCTCGAATTGCTTTCGAGCGTGAAGCGAACTAACAAGGTACCCTAACCTTA
CCCATCGCAGGTTTATGTCGAAAAGGGTTCAACTCGAATGGGAGTAT
Found at i:188798 original size:48 final size:48
Alignment explanation
Indices: 188746--188837 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 48
188736 TTTTCTCTAT
* *
188746 AAGAGCTATTCTAAAC-AGGACCTGTTTTAAGCAAAAGTTGTTCTCCAC
1 AAGAGCTATTCTAAACTA-AACCTGTTTTAAACAAAAGTTGTTCTCCAC
* * **
188794 AAGAGTTTTTCTAAACTAAAGTTGTTTTAAACAAAAGTTGTTCT
1 AAGAGCTATTCTAAACTAAACCTGTTTTAAACAAAAGTTGTTCT
188838 GAACAATAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
48 36 0.97
49 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (48 bp):
AAGAGCTATTCTAAACTAAACCTGTTTTAAACAAAAGTTGTTCTCCAC
Found at i:188816 original size:16 final size:15
Alignment explanation
Indices: 188779--188856 Score: 75
Period size: 16 Copynumber: 4.9 Consensus size: 15
188769 GTTTTAAGCA
**
188779 AAAGTTGTTCTCCAC
1 AAAGTTGTTCTAAAC
*
188794 AAGAGTTTTTCTAAAC
1 AA-AGTTGTTCTAAAC
*
188810 TAAAGTTGTTTTAAAC
1 -AAAGTTGTTCTAAAC
*
188826 AAAAGTTGTTCTGAAC
1 -AAAGTTGTTCTAAAC
188842 AATAGTTGTTCTAAA
1 AA-AGTTGTTCTAAA
188857 TAGCAACTGT
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
15 4 0.08
16 45 0.88
17 2 0.04
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (15 bp):
AAAGTTGTTCTAAAC
Found at i:190260 original size:13 final size:13
Alignment explanation
Indices: 190242--190266 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
190232 CATGGCACAT
190242 TGTATCGATACAA
1 TGTATCGATACAA
190255 TGTATCGATACA
1 TGTATCGATACA
190267 GGATAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:190264 original size:33 final size:33
Alignment explanation
Indices: 190222--190286 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
190212 TACCACTATT
*
190222 TGTATCGATACATGG-CACATTGTATCGATACAA
1 TGTATCGATACA-GGACAAATTGTATCGATACAA
*
190255 TGTATCGATACAGGATAAATTGTATCGATACA
1 TGTATCGATACAGGACAAATTGTATCGATACA
190287 TTGCTTCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAGGACAAATTGTATCGATACAA
Found at i:194679 original size:13 final size:13
Alignment explanation
Indices: 194661--194685 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
194651 CATAAAATGT
194661 TGTATCGATACAA
1 TGTATCGATACAA
194674 TGTATCGATACA
1 TGTATCGATACA
194686 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:194697 original size:33 final size:33
Alignment explanation
Indices: 194641--194707 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
194631 TTCAACGATT
*
194641 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCAATACAA
*** *
194674 TGTATCGATACATATTTTTTTGTATCAATACAA
1 TGTATCGATACATAAAATGTTGTATCAATACAA
194707 T
1 T
194708 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCAATACAA
Found at i:194769 original size:13 final size:13
Alignment explanation
Indices: 194751--194775 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
194741 ATTACTCACA
194751 TGTATCGATACAT
1 TGTATCGATACAT
194764 TGTATCGATACA
1 TGTATCGATACA
194776 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:194840 original size:52 final size:52
Alignment explanation
Indices: 194784--194908 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
194774 CACTGATCTT
*
194784 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
194836 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
194888 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
194909 CTTTTCATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:201208 original size:12 final size:12
Alignment explanation
Indices: 201193--201217 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
201183 CAAAAGTCAA
201193 AAAAAAAAAAAC
1 AAAAAAAAAAAC
201205 AAAAAAAAAAAC
1 AAAAAAAAAAAC
201217 A
1 A
201218 GAAGAAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:202505 original size:27 final size:27
Alignment explanation
Indices: 202466--202615 Score: 84
Period size: 34 Copynumber: 5.0 Consensus size: 27
202456 GGCATTTTTT
* *
202466 CTTCAAAGTCCACGACTCCGTGGCACC
1 CTTCAAAGCCCACAACTCCGTGGCACC
*
202493 CTTCTAAGCCCACAACTCCGTGGCACC
1 CTTCAAAGCCCACAACTCCGTGGCACC
* *
202520 TTTTTCTTTTTAAAGCCCACAGCTCCGTGGCACTCGTTTTC
1 -----C--TTCAAAGCCCACAACTCCGTGGCA--C-----C
**
202561 CTTTTAAGCCCACAACTCCGTGGCACC
1 CTTCAAAGCCCACAACTCCGTGGCACC
* *
202588 CTTTTAAAGTCCACAACTCCGTGGCACC
1 C-TTCAAAGCCCACAACTCCGTGGCACC
202616 TTTTTCTTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
27 26 0.27
28 24 0.24
32 2 0.02
34 43 0.44
36 2 0.02
41 1 0.01
ACGTcount: A:0.21, C:0.37, G:0.15, T:0.27
Consensus pattern (27 bp):
CTTCAAAGCCCACAACTCCGTGGCACC
Found at i:202546 original size:34 final size:34
Alignment explanation
Indices: 202498--203342 Score: 1057
Period size: 34 Copynumber: 24.8 Consensus size: 34
202488 GCACCCTTCT
202498 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* * *
202532 AAGCCCACAGCTCCGTGGCACTCGTTTTCCTTTT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
202566 AAGCCCACAACTCCGTGGCACC-----C-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
202594 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
202628 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
202665 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
202699 AAGCCCACAACTCCGTGGCATTCTTTTTCCCTTTTTA
1 AAGCCCACAACTCCGTGGCA-CCTTTTT--CTTTTTA
202736 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
202770 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
* * *
202807 AAGCCCACAACTCCGTGGCACCTTTCTCCTTCT-
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
202840 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
202874 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
202908 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
202945 AAGCCCATAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
202979 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
203013 AAGCCCATAACTCCGTGGCATTCTTTTTCCCTTTTTA
1 AAGCCCACAACTCCGTGGCA-CCTTTTT--CTTTTTA
203050 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
203084 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
203121 AAGCCCACAACTCCGTGGAACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
203154 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTTA
* ** ** *
203189 AAGTCCACAACTTAGTGGCACC---TTCTCATCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
203220 AAGTCCACAACTTCGTGGCACC-----C-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
** * * *
203248 AAGCCCACAACTTTGTGGCACTCGTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
* * **
203282 AAGCCCACAGCTCCGTGGCACTCTTTTCCCGTTT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
203316 AAGCCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTT
203343 AAGTCCACAA
Statistics
Matches: 727, Mismatches: 46, Indels: 77
0.86 0.05 0.09
Matches are distributed among these distances:
27 4 0.01
28 43 0.06
29 2 0.00
30 2 0.00
31 23 0.03
33 61 0.08
34 322 0.44
35 68 0.09
36 39 0.05
37 163 0.22
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
Found at i:202610 original size:28 final size:28
Alignment explanation
Indices: 202560--203516 Score: 265
Period size: 34 Copynumber: 29.2 Consensus size: 28
202550 CACTCGTTTT
202560 CCTTTT-AAGCCCACAACTCCGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
*
202587 CCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
202615 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCA--------C
202657 CCTTTTTAAAGCCCACAACTCCGTGGCAC
1 CC-TTTTAAAGCCCACAACTCCGTGGCAC
202686 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCATTCTTTTTC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCA--------C
202728 CCTTTTTAAAGCCCACAACTCCGTGGCAC
1 CC-TTTTAAAGCCCACAACTCCGTGGCAC
202757 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCA--------C
202799 CCTTTTTAAAGCCCACAACTCCGTGGCAC
1 CC-TTTTAAAGCCCACAACTCCGTGGCAC
202828 CTTTCTCCTTCT-AAGCCCACAACTCCGTGGCAC
1 C---CT--TT-TAAAGCCCACAACTCCGTGGCAC
202861 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCAC
202895 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCA--------C
*
202937 CCTTTTTAAAGCCCATAACTCCGTGGCAC
1 CC-TTTTAAAGCCCACAACTCCGTGGCAC
202966 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCAC
*
203000 CTTTTTCTTTTTAAAGCCCATAACTCCGTGGCATTCTTTTTC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCA--------C
203042 CCTTTTTAAAGCCCACAACTCCGTGGCAC
1 CC-TTTTAAAGCCCACAACTCCGTGGCAC
203071 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 C-----C-TTTTAAAGCCCACAACTCCGTGGCA--------C
*
203113 CCTTTTTAAAGCCCACAACTCCGTGGAAC
1 CC-TTTTAAAGCCCACAACTCCGTGGCAC
203142 CTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 C-----CTTTTAAAGCCCACAACTCCGTGGCA--------C
* **
203183 CCTTTT-AAGTCCACAACTTAGTGGCA-
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
* *
203209 CCTTCTCATCAAAGTCCACAACTTCGTGGCAC
1 CCTT-T--T-AAAGCCCACAACTCCGTGGCAC
**
203241 CCTTTTAAAGCCCACAACTTTGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
* * *
203269 TCGTTTTCCTTCTAAGCCCACAGCTCCGTGGCAC
1 -C--CTT--TT-AAAGCCCACAACTCCGTGGCAC
* *
203303 TCTTTTCCCGTTTAAGCCCACAACTCCGTGGCAC
1 -C-CTT----TTAAAGCCCACAACTCCGTGGCAC
* *
203337 CCTTTT-AAGTCCACAACTCAGTGGCA-
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
* *
203363 CCTTCTCATCAAAGTCCACAACTTCGTGGCAC
1 CCTT-T--T-AAAGCCCACAACTCCGTGGCAC
**
203395 CCTTTTAAAGCCCACAACTTTGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
* * *
203423 TCGTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 -C--CTT--TT-AAAGCCCACAACTCCGTGGCAC
* *
203457 CCGTTT-AAGCCCATAACTCCGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
* * *
203484 CCTTTT-AAGTCCACGACTCTGTGGCAC
1 CCTTTTAAAGCCCACAACTCCGTGGCAC
203511 CCTTTT
1 CCTTTT
203517 TTTCCGTTAA
Statistics
Matches: 764, Mismatches: 42, Indels: 248
0.72 0.04 0.24
Matches are distributed among these distances:
26 8 0.01
27 73 0.10
28 63 0.08
29 20 0.03
31 45 0.06
32 11 0.01
33 60 0.08
34 281 0.37
35 24 0.03
36 6 0.01
37 159 0.21
41 2 0.00
42 12 0.02
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.33
Consensus pattern (28 bp):
CCTTTTAAAGCCCACAACTCCGTGGCAC
Found at i:202617 original size:27 final size:27
Alignment explanation
Indices: 202560--202654 Score: 100
Period size: 28 Copynumber: 3.2 Consensus size: 27
202550 CACTCGTTTT
202560 CCTTTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
202587 CCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTT-AAGCCCACAACTCCGTGGCAC
202615 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
1 C-----C-TTTT-AAGCCCACAACTCCGTGGCAC
*
202649 TCTTTT
1 CCTTTT
202655 TCCCTTTTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
27 6 0.10
28 25 0.43
29 1 0.02
33 1 0.02
34 25 0.43
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.32
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:202705 original size:71 final size:68
Alignment explanation
Indices: 202498--203342 Score: 1057
Period size: 71 Copynumber: 12.4 Consensus size: 68
202488 GCACCCTTCT
* * *
202498 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAGCTCCGTGGCACTCGTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
202563 TTT-
65 TTTA
*
202566 AAGCCCACAACTCCGTGGCACC-----C-TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
202625 TTA
66 TTA
202628 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
202693 TTTTTA
63 TTTTTA
*
202699 AAGCCCACAACTCCGTGGCATTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 AAGCCCACAACTCCGTGGCA-CCTTTTT--CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
202764 TTTTTA
63 TTTTTA
*
202770 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTCTC
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
202835 CTTCT-
63 TTTTTA
202840 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
202905 TTA
66 TTA
*
202908 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCATAACTCCGTGGCACCTTTTTC
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
202973 TTTTTA
63 TTTTTA
* *
202979 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCATTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA-CCTTTTT--C
203044 TTTTTA
63 TTTTTA
203050 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C
203115 TTTTTA
63 TTTTTA
* *
203121 AAGCCCACAACTCCGTGGAACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CT
203185 TTTT-
64 TTTTA
* ** ** * * *
203189 AAGTCCACAACTTAGTGGCACC---TTCTCATCAAAGTCCACAACTTCGTGGCACC-----C-TT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
203245 TTA
66 TTA
** * * * * * *
203248 AAGCCCACAACTTTGTGGCACTCGTTTTCCTTCT-AAGCCCACAGCTCCGTGGCACTCTTTTCCC
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCT
*
203312 GTTT-
64 TTTTA
*
203316 AAGCCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTT
203343 AAGTCCACAA
Statistics
Matches: 702, Mismatches: 42, Indels: 67
0.87 0.05 0.08
Matches are distributed among these distances:
58 4 0.01
59 20 0.03
60 1 0.00
61 10 0.01
62 63 0.09
63 6 0.01
65 4 0.01
66 21 0.03
67 42 0.06
68 108 0.15
69 27 0.04
70 61 0.09
71 335 0.48
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (68 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
TTA
Found at i:202767 original size:105 final size:104
Alignment explanation
Indices: 202498--203342 Score: 1066
Period size: 105 Copynumber: 8.3 Consensus size: 104
202488 GCACCCTTCT
* * *
202498 AAGCCCACAACTCCGTGGCACCTTTTT-CTTTTTAAAGCCCACAGCTCCGTGGCACTCGTTTTCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
202562 TTTT-AAGCCCACAACTCCGTGGCACC-----C-TTTTA
66 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
202594 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--
202658 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
64 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
202699 AAGCCCACAACTCCGTGGCATTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 AAGCCCACAACTCCGTGGCA-CCTTTTT-CCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
202763 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTA
64 CTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
* *
202807 AAGCCCACAACTCCGTGGCACCTTTCTCC-TTCT-AAGCCCACAACTCCGTGGCAC-CTTTTTCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
202869 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
66 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
202908 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCATAACTCCGTGGCAC-CTTTTT
1 AAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
202972 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
64 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
203013 AAGCCCATAACTCCGTGGCATTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 AAGCCCACAACTCCGTGGCA-CCTTTTT-CCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
203077 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTA
64 CTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
203121 AAGCCCACAACTCCGTGGAACCTTTTT-C-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-C
* * ** ** *
203184 CTTTT-AAGTCCACAACTTAGTGGCACC---TTCTCATCA
65 TTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* * ** * *
203220 AAGTCCACAACTTCGTGGCA-C-----CC-TTTTAAAGCCCACAACTTTGTGGCACTCGTTTTCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
* * * **
203278 TTCT-AAGCCCACAGCTCCGTGGCACTCTTTTCCCGTTT-
66 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
203316 AAGCCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTT
203343 AAGTCCACAA
Statistics
Matches: 670, Mismatches: 43, Indels: 66
0.86 0.06 0.08
Matches are distributed among these distances:
93 22 0.03
94 32 0.05
96 77 0.11
97 4 0.01
98 6 0.01
99 43 0.06
101 30 0.04
102 5 0.01
103 8 0.01
104 86 0.13
105 235 0.35
106 25 0.04
107 17 0.03
108 80 0.12
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (104 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
Found at i:203266 original size:94 final size:95
Alignment explanation
Indices: 203045--203363 Score: 286
Period size: 94 Copynumber: 3.3 Consensus size: 95
203035 CTTTTTCCCT
* * * * *
203045 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 TTTTAAAGCCCACAACTCAGTGGCACTCGTTTTCCTTCT-AAGCCCACAACTCAGTGGCACTC--
* * *
203109 TTTCCCTTTTTAAAGCCCACAACTCCGTGGAACCTTTTTC
63 TTTCCC--ATCAAAGCCCACAACTCCGTGGCACC-----C
* * * * *
203149 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTTAGTGGCAC-C-T
1 TTTTAAAGCCCACAACTCAGTGGCACTCGTTTT-CCTTCTAAGCCCACAACTCAGTGGCACTCTT
* * *
203212 TCTCATCAAAGTCCACAACTTCGTGGCACCC
65 TCCCATCAAAGCCCACAACTCCGTGGCACCC
** * *
203243 TTTTAAAGCCCACAACTTTGTGGCACTCGTTTTCCTTCTAAGCCCACAGCTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCAGTGGCACTCGTTTTCCTTCTAAGCCCACAACTCAGTGGCACTC-TT
* **
203308 TCCCGTTTAAGCCCACAACTCCGTGGCACCC
65 TCCCATCAAAGCCCACAACTCCGTGGCACCC
*
203339 TTTT-AAGTCCACAACTCAGTGGCAC
1 TTTTAAAGCCCACAACTCAGTGGCAC
203364 CTTCTCATCA
Statistics
Matches: 183, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
93 22 0.12
94 32 0.17
95 18 0.10
96 30 0.16
99 21 0.11
101 4 0.02
104 27 0.15
105 24 0.13
106 5 0.03
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (95 bp):
TTTTAAAGCCCACAACTCAGTGGCACTCGTTTTCCTTCTAAGCCCACAACTCAGTGGCACTCTTT
CCCATCAAAGCCCACAACTCCGTGGCACCC
Found at i:203343 original size:27 final size:27
Alignment explanation
Indices: 203313--203516 Score: 176
Period size: 27 Copynumber: 7.1 Consensus size: 27
203303 TCTTTTCCCG
*
203313 TTTAAGCCCACAACTCCGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
*
203340 TTTAAGTCCACAACTCAGTGGCA-CCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
*
203366 TCTCATCAAAGTCCACAACTTCGTGGCACCCT
1 T-T--T--AAGTCCACAACTCCGTGGCACCCT
* **
203398 TTTAAAGCCCACAACTTTGTGGCACTCGTTTTCCT
1 TTT-AAGTCCACAACTCCGTGGCA--C-----CCT
* *
203433 TCTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGTCCACAACTCCGTGGCACCCT
* *
203460 TTTAAGCCCATAACTCCGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
* *
203487 TTTAAGTCCACGACTCTGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
203514 TTT
1 TTT
203517 TTTCCGTTAA
Statistics
Matches: 145, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
26 4 0.03
27 73 0.50
28 19 0.13
29 2 0.01
30 1 0.01
31 19 0.13
32 5 0.03
34 17 0.12
35 5 0.03
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (27 bp):
TTTAAGTCCACAACTCCGTGGCACCCT
Found at i:203444 original size:120 final size:116
Alignment explanation
Indices: 203116--203583 Score: 354
Period size: 120 Copynumber: 3.8 Consensus size: 116
203106 CTTTTTCCCT
* * **
203116 TTTTAAAGCCCACAACTCCGTGGAACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCACAACTTCGTGGCA-C--TCGCTTTTAAAGCCCACAACTCCGTGGCACTC-TTT
**
203181 TCCCTTTTAAGTCCACAACTTAGTGGCA-CCTTCTCATCAAAGTCCACAACTTCGTGGCACCC
62 TCCC-TTTAAGTCCACAACTCCGTGGCACCCTT-T--T--AAGTCCACAAC-TCGTGGCA-CC
* * * *
203243 TTTTAAAGCCCACAACTTTGTGGCACTCGTTTTCCTTCTAAGCCCACAGCTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTTCGTGGCACTCG-CTT--TT-AAAGCCCACAACTCCGTGGCACTCTTT
*
203308 TCCCGTTTAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCAGTGGCACC
62 TCCC-TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC-GTGGCACC
* **
203365 TTCTCATCAAAGTCCACAACTTCGTGGCAC-C-CTTTTAAAGCCCACAACTTTGTGGCACTCGTT
1 TT-T--T-AAAGCCCACAACTTCGTGGCACTCGCTTTTAAAGCCCACAACTCCGTGGCACTC-TT
* * *
203428 TT-CCTTCTAAGTCCACAACTCCGTGGCACCCGTTTAAGCCCATAACTCCGTGGCACCC
61 TTCCCTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACT-CGTGGCA-CC
* * *** *
203486 TTTT-AAGTCCACGAC-TCTGTGGCACCCTTTTTTTCCGTTAAAGCCCACAACTACGTGGCACTC
1 TTTTAAAGCCCACAACTTC-GTGGCA--C-TCGCTT---TTAAAGCCCACAACTCCGTGGCACTC
* * * *
203549 TTTTCCTTTTAAGTCCACAAGTCGGTGGCAACCTT
59 TTTTCCCTTTAAGTCCACAACTCCGTGGCACCCTT
203584 CTTCTAAAGC
Statistics
Matches: 284, Mismatches: 33, Indels: 52
0.77 0.09 0.14
Matches are distributed among these distances:
115 2 0.01
116 16 0.06
118 2 0.01
119 2 0.01
120 65 0.23
121 13 0.05
122 6 0.02
123 46 0.16
124 28 0.10
125 5 0.02
126 21 0.07
127 52 0.18
128 26 0.09
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.30
Consensus pattern (116 bp):
TTTTAAAGCCCACAACTTCGTGGCACTCGCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCC
TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCGTGGCACC
Found at i:203543 original size:90 final size:89
Alignment explanation
Indices: 203382--203546 Score: 208
Period size: 90 Copynumber: 1.8 Consensus size: 89
203372 CAAAGTCCAC
* * * *
203382 AACTTCGTGGCACCCTTTTAAAGCCCACAACTTTGTGGCACTCGTTTTCCTTCTAAGTCCACAAC
1 AACTCCGTGGCACCCTTTTAAAGCCCACAACTCTGTGGCACTCGTTTTCCTTCAAAGCCCACAAC
*
203447 TCCGTGGCACCCGTTTAAGCCCAT
66 TACGTGGCACCCGTTTAAGCCCAT
* * **
203471 AACTCCGTGGCACCCTTTT-AAGTCCACGACTCTGTGGCACCCTTTTTTTCCGTT-AAAGCCCAC
1 AACTCCGTGGCACCCTTTTAAAGCCCACAACTCTGTGGCA--CTCGTTTTCC-TTCAAAGCCCAC
203534 AACTACGTGGCAC
63 AACTACGTGGCAC
203547 TCTTTTCCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
88 17 0.27
89 18 0.28
90 27 0.42
91 2 0.03
ACGTcount: A:0.21, C:0.34, G:0.16, T:0.28
Consensus pattern (89 bp):
AACTCCGTGGCACCCTTTTAAAGCCCACAACTCTGTGGCACTCGTTTTCCTTCAAAGCCCACAAC
TACGTGGCACCCGTTTAAGCCCAT
Found at i:203630 original size:32 final size:33
Alignment explanation
Indices: 203564--203684 Score: 210
Period size: 33 Copynumber: 3.7 Consensus size: 33
203554 CTTTTAAGTC
203564 CACAAGTCGGTGGCAA-CCTTCTTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCA
203597 CACAAGTCGGTGGCAACCCTTCTC-AAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
*
203629 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
203662 CACAAGTCGGTGGCAACCCTTCT
1 CACAAGTCGGTGGCAACCCTTCT
203685 AACCCCAATA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
32 31 0.37
33 48 0.57
34 5 0.06
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.19
Consensus pattern (33 bp):
CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
Found at i:203742 original size:49 final size:48
Alignment explanation
Indices: 203689--204473 Score: 1028
Period size: 49 Copynumber: 16.6 Consensus size: 48
203679 CCTTCTAACC
*
203689 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
*
203738 CCAATATCGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
* *
203781 CCAATATCGCTAGCCTTGAATCAGCACATTGGCA---C--CTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
* *
203824 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
*
203873 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
* *
203916 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
203965 CCAATATAGCTGGCCTAT-AATCAGCACATTGGCA---C--CTTTAAGT
1 CCAATATAGCTGGCCT-TGAATCAGCACATTGGCACCTCATCTTTAAGT
* *
204008 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
* * *
204057 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTACGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
* *
204106 CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
* *
204155 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
*
204203 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
* *
204251 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTAATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
* *
204300 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
*
204348 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
* *
204391 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCAC---CT-CATCTTTAAGT
* *
204443 TCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CCAATATAGCTGGCCTTGAATCAGCACATTG
204474 ACATCCTTTT
Statistics
Matches: 668, Mismatches: 38, Indels: 57
0.88 0.05 0.07
Matches are distributed among these distances:
42 1 0.00
43 199 0.30
45 4 0.01
47 3 0.00
48 136 0.20
49 287 0.43
50 2 0.00
52 36 0.05
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
Found at i:203775 original size:21 final size:21
Alignment explanation
Indices: 203751--203818 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
203741 ATATCGCTGG
203751 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* *
203772 CCTTTAAGTC--CA-ATATCGCTA
1 CCTTGAA-TCAGCACAT-TGGC-A
203793 GCCTTGAATCAGCACATTGGCA
1 -CCTTGAATCAGCACATTGGCA
203815 CCTT
1 CCTT
203819 TAAGTCCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:203869 original size:92 final size:92
Alignment explanation
Indices: 203730--204482 Score: 1029
Period size: 92 Copynumber: 8.0 Consensus size: 92
203720 GCACCTTCAT
* *
203730 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
*
203789 GCTAGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
203816 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
203881 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
203908 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
203973 GCTGGCCTAT-AATCAGCACATTGGCAC
66 GCTGGCCT-TGAATCAGCACATTGGCAC
* *
204000 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
*
204065 GCTGGCCTTGAATCAGCATATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
204092 CTTTATCTTTACGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 CTTTA-----A-GTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
204157 AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
60 AATATAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
204195 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
*
204259 GCTGGCCTTGAATCAGCATATTGGCACC
66 GCTGGCCTTGAATCAGCACATTGGCA-C
* *
204287 TTAATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCA
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCA
*
204351 ATGTAGCTGGCCTTGAATCAGCACATTGGCAC
61 ATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
204383 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTTTAAGTCCAAT
* *
204448 GTAGCTGGCCTTGAATCAGCACATTGACATC
63 ATAGCTGGCCTTGAATCAGCACATTGGCA-C
204479 CTTT
1 CTTT
204483 TTCTCATCAT
Statistics
Matches: 613, Mismatches: 24, Indels: 50
0.89 0.03 0.07
Matches are distributed among these distances:
86 41 0.07
90 1 0.00
91 44 0.07
92 224 0.37
93 1 0.00
94 1 0.00
95 42 0.07
96 48 0.08
97 125 0.20
98 78 0.13
103 8 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:204594 original size:67 final size:68
Alignment explanation
Indices: 204486--204612 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
204476 ATCCTTTTTC
* * *
204486 TCATCATTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
204550 TCT
66 TCT
* * * * *
204553 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
204613 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (68 bp):
TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:205445 original size:33 final size:33
Alignment explanation
Indices: 205408--205474 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
205398 TTCAACGATT
205408 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
205441 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
205474 T
1 T
205475 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:205446 original size:13 final size:13
Alignment explanation
Indices: 205428--205452 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205418 CATAAAATGT
205428 TGTATCGATACAA
1 TGTATCGATACAA
205441 TGTATCGATACA
1 TGTATCGATACA
205453 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:205515 original size:13 final size:13
Alignment explanation
Indices: 205497--205521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205487 CAAAAAAAAA
205497 TGTATCGATACAT
1 TGTATCGATACAT
205510 TGTATCGATACA
1 TGTATCGATACA
205522 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:205588 original size:52 final size:52
Alignment explanation
Indices: 205530--205654 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
205520 CACTGATCTT
* *
205530 TGTATCGATACATGCAGGCAAATTTGCTCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
205582 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
205634 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
205655 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:212683 original size:13 final size:13
Alignment explanation
Indices: 212665--212689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
212655 CATTATGCTT
212665 TGTATCGATACAA
1 TGTATCGATACAA
212678 TGTATCGATACA
1 TGTATCGATACA
212690 TGCTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:212686 original size:33 final size:32
Alignment explanation
Indices: 212644--212708 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
212634 ATCCACCTAG
* *
212644 ATGTATCGATACATTATGCTTTGTATCGATACA
1 ATGTATCGATACATGAT-CATTGTATCGATACA
*
212677 ATGTATCGATACATGCTCATTGTATCGATACA
1 ATGTATCGATACATGATCATTGTATCGATACA
212709 TGGACAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (32 bp):
ATGTATCGATACATGATCATTGTATCGATACA
Found at i:212720 original size:20 final size:20
Alignment explanation
Indices: 212674--212730 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
212664 TTGTATCGAT
212674 ACAA-TGTATCGATACATGC
1 ACAATTGTATCGATACATGC
* *
212693 TC-ATTGTATCGATACATGG
1 ACAATTGTATCGATACATGC
*
212712 ACAATTGTATCGATCCATG
1 ACAATTGTATCGATACATG
212731 AAACTGCCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.50
20 15 0.47
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (20 bp):
ACAATTGTATCGATACATGC
Found at i:214552 original size:22 final size:23
Alignment explanation
Indices: 214515--214558 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
214505 TCTCTCCCTC
214515 TTTTTTGTTTTCAAAATAATCTT
1 TTTTTTGTTTTCAAAATAATCTT
214538 TTTTTTGTTTT-AAAATAATCT
1 TTTTTTGTTTTCAAAATAATCT
214559 CCCCCTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTTTTGTTTTCAAAATAATCTT
Found at i:216809 original size:13 final size:13
Alignment explanation
Indices: 216791--216815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
216781 CATTATGCTT
216791 TGTATCGATACAA
1 TGTATCGATACAA
216804 TGTATCGATACA
1 TGTATCGATACA
216816 TGCTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:216812 original size:33 final size:32
Alignment explanation
Indices: 216770--216834 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
216760 ATCCACCTAG
* *
216770 ATGTATCGATACATTATGCTTTGTATCGATACA
1 ATGTATCGATACATGAT-CATTGTATCGATACA
*
216803 ATGTATCGATACATGCTCATTGTATCGATACA
1 ATGTATCGATACATGATCATTGTATCGATACA
216835 TGGACAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (32 bp):
ATGTATCGATACATGATCATTGTATCGATACA
Found at i:216846 original size:20 final size:20
Alignment explanation
Indices: 216800--216856 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
216790 TTGTATCGAT
216800 ACAA-TGTATCGATACATGC
1 ACAATTGTATCGATACATGC
* *
216819 TC-ATTGTATCGATACATGG
1 ACAATTGTATCGATACATGC
*
216838 ACAATTGTATCGATCCATG
1 ACAATTGTATCGATACATG
216857 AAACTGCCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.50
20 15 0.47
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (20 bp):
ACAATTGTATCGATACATGC
Done.