Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5794061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 68655 characters in sequence are not A, C, G, or T
File 10 of 38
Found at i:1543431 original size:34 final size:34
Alignment explanation
Indices: 1543386--1543460 Score: 118
Period size: 34 Copynumber: 2.2 Consensus size: 34
1543376 GGCATCTTCC
1543386 ACCCTT-TCTAAAGCCCACACAAGTC-GGTGGTAA
1 ACCCTTCTCTAAAGCCCACACAAGTCAGGTGG-AA
*
1543419 ACCCTTCTCTAAAGCCCACACAAGTCAGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCAGGTGGAA
1543453 ACCCTTCT
1 ACCCTTCT
1543461 AAGCCCAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
33 6 0.15
34 28 0.72
35 5 0.13
ACGTcount: A:0.28, C:0.35, G:0.16, T:0.21
Consensus pattern (34 bp):
ACCCTTCTCTAAAGCCCACACAAGTCAGGTGGAA
Found at i:1543524 original size:49 final size:49
Alignment explanation
Indices: 1543460--1544575 Score: 1405
Period size: 49 Copynumber: 23.7 Consensus size: 49
1543450 GCAACCCTTC
* * * *
1543460 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
1543509 TAAGTCCAATGTAGCTGGCCTTGACTCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1543558 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1543607 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
1543650 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1543699 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1543742 TAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1543791 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1543834 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1543883 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACACTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1543926 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1543975 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1544018 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1544067 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACACTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1544110 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1544159 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1544202 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1544251 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1544300 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1544348 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1544397 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1544445 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1544488 TAAGTCCAATATAGCTGGCCTTGAATCAACATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
1544540 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1544576 ACATCCTTTT
Statistics
Matches: 941, Mismatches: 74, Indels: 101
0.84 0.07 0.09
Matches are distributed among these distances:
43 308 0.33
45 7 0.01
47 7 0.01
48 92 0.10
49 492 0.52
50 1 0.00
52 34 0.04
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1543676 original size:92 final size:92
Alignment explanation
Indices: 1543555--1544584 Score: 1641
Period size: 92 Copynumber: 11.0 Consensus size: 92
1543545 GCACCTTCAT
* * *
1543555 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1543620 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
1543647 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1543712 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
1543739 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1543804 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
1543831 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1543896 GCTGGCCTTGAATCAGCACACTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
1543923 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1543988 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
1544015 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1544080 GCTGGCCTTGAATCAGCACACTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
1544107 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1544172 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
1544199 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1544264 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
1544295 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
*
1544359 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * * *
1544392 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCACCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1544456 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
1544485 CTTTAAGTCCAATATAGCTGGCCTTGAATCAACATATCGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
*
1544550 GTAGCTGGCCTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
1544581 CTTT
1 CTTT
1544585 TTCATCATCT
Statistics
Matches: 898, Mismatches: 29, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
91 38 0.04
92 629 0.70
93 1 0.00
94 1 0.00
95 42 0.05
96 6 0.01
97 142 0.16
98 39 0.04
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1544697 original size:67 final size:68
Alignment explanation
Indices: 1544589--1544715 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
1544579 TCCTTTTTCA
* * *
1544589 TCATCTTCAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTCAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
1544653 TCT
66 TCT
* * * * *
1544656 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTCAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCATCTTT
1544716 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (68 bp):
TCATCTTCAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:1545520 original size:13 final size:13
Alignment explanation
Indices: 1545502--1545526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1545492 CATAAAATGT
1545502 TGTATCGATACAA
1 TGTATCGATACAA
1545515 TGTATCGATACA
1 TGTATCGATACA
1545527 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1545524 original size:33 final size:33
Alignment explanation
Indices: 1545482--1545548 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1545472 TTCAACGATT
1545482 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1545515 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1545548 T
1 T
1545549 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1545609 original size:13 final size:13
Alignment explanation
Indices: 1545591--1545615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1545581 ATTACTCACA
1545591 TGTATCGATACAT
1 TGTATCGATACAT
1545604 TGTATCGATACA
1 TGTATCGATACA
1545616 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1545752 original size:52 final size:52
Alignment explanation
Indices: 1545624--1545744 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1545614 CACTGATCTT
*
1545624 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1545676 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1545728 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1545745 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1549171 original size:13 final size:13
Alignment explanation
Indices: 1549153--1549177 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1549143 ATTTTGCTTA
1549153 GTATCGATACATT
1 GTATCGATACATT
1549166 GTATCGATACAT
1 GTATCGATACAT
1549178 AAAACGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1549247 original size:32 final size:32
Alignment explanation
Indices: 1549205--1549333 Score: 204
Period size: 32 Copynumber: 4.0 Consensus size: 32
1549195 AATCTCATTT
1549205 TCACTATTCATCACTGTTCATATATCGATACA
1 TCACTATTCATCACTGTTCATATATCGATACA
* *
1549237 TCACTGTTCATCATTGTTCATATATCGATACA
1 TCACTATTCATCACTGTTCATATATCGATACA
* * *
1549269 TCACTGTTCATCATTGTTCATGTATCGATACA
1 TCACTATTCATCACTGTTCATATATCGATACA
*
1549301 TCACTATTCATCACTGTTCATGTATCGATACA
1 TCACTATTCATCACTGTTCATATATCGATACA
1549333 T
1 T
1549334 TGAGTCCAAC
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (32 bp):
TCACTATTCATCACTGTTCATATATCGATACA
Found at i:1549416 original size:20 final size:20
Alignment explanation
Indices: 1549373--1549416 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1549363 TTCAAACGTA
* *
1549373 TGTATCGATACATTATGAAT
1 TGTATCGATACATTAGGAAG
1549393 TGTATCGATACA-TAGGAGAG
1 TGTATCGATACATTAGGA-AG
1549413 TGTA
1 TGTA
1549417 AGTACGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATTAGGAAG
Found at i:1553695 original size:20 final size:20
Alignment explanation
Indices: 1553670--1553726 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
1553660 GTAACAAAAC
* *
1553670 AAAATGTATCGATTCATTGA
1 AAAATGTATCGATACATTCA
1553690 AAAATGTATCGATACATTCA
1 AAAATGTATCGATACATTCA
* *
1553710 TACATGTATCGATACAT
1 AAAATGTATCGATACAT
1553727 CTGGGTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:1553776 original size:71 final size:71
Alignment explanation
Indices: 1553625--1553756 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 71
1553615 TAACTAGATG
*
1553625 TATCGATACATTGAATAATGTATCGATACATCTGGGTAACAAAACAAAATGTATCGATTCATTGA
1 TATCGATACATTGAATAATGTATCGATACATCTGGGTAACAAAACAAAATGTATCGATACATTGA
*
1553690 AAAATG
66 AAAATA
* * *
1553696 TATCGATACATT-CATACATGTATCGATACATCTGGGTAA-AAAATAGAATGTATCGATACAT
1 TATCGATACATTGAATA-ATGTATCGATACATCTGGGTAACAAAACAAAATGTATCGATACAT
1553757 GTACTATTCA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
70 22 0.39
71 34 0.61
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (71 bp):
TATCGATACATTGAATAATGTATCGATACATCTGGGTAACAAAACAAAATGTATCGATACATTGA
AAAATA
Found at i:1554665 original size:131 final size:132
Alignment explanation
Indices: 1554516--1554798 Score: 399
Period size: 131 Copynumber: 2.2 Consensus size: 132
1554506 GATAAGAATC
* * *
1554516 TGACCAAGGTGATAACCATATGTCAAATAGGAAAGAGGTGGATTTGACCAGAGTAGTAACCATAC
1 TGACTAAGGTGATAACCATATGTCAAATAGGAAAGAGGTGCATTTAACCAGAGTAGTAACCATAC
* *
1554581 GTCAAATCGAAATGAAAAGAATCTGACAAAGGTGGTAACCAT-CGTTAAACAAG-AATGAGGCAA
66 GTCAAATCAAAATGAAAAGAATCTGACAAAGCTGGTAACCATACGTTAAACAAGAAAT-AGGCAA
1554644 ATT
130 ATT
* * * * *
1554647 TGACTAAGGTCATAACCATATGTTAGATAGGAAAGAGGTGCATTTAACCAGGGTGGTAACCATAC
1 TGACTAAGGTGATAACCATATGTCAAATAGGAAAGAGGTGCATTTAACCAGAGTAGTAACCATAC
* * * *
1554712 GTTAAATCAAAATGAAAAGAATCTGACCAAGCTGGTAACCATACGTTAGACAAGAAATAGGCAGA
66 GTCAAATCAAAATGAAAAGAATCTGACAAAGCTGGTAACCATACGTTAAACAAGAAATAGGCAAA
1554777 TT
131 TT
* *
1554779 TGACTAGGGTGGTAACCATA
1 TGACTAAGGTGATAACCATA
1554799 CGTAAAATTA
Statistics
Matches: 133, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
131 95 0.71
132 35 0.26
133 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (132 bp):
TGACTAAGGTGATAACCATATGTCAAATAGGAAAGAGGTGCATTTAACCAGAGTAGTAACCATAC
GTCAAATCAAAATGAAAAGAATCTGACAAAGCTGGTAACCATACGTTAAACAAGAAATAGGCAAA
TT
Found at i:1554760 original size:88 final size:88
Alignment explanation
Indices: 1554659--1554845 Score: 232
Period size: 88 Copynumber: 2.1 Consensus size: 88
1554649 ACTAAGGTCA
* * * * *
1554659 TAACCATATGTTAGATAGGAAAGAGG-TGCATTTAACCAGGGTGGTAACCATACGTTAAATCAAA
1 TAACCATACGTTAGACAAGAAAGAGGCAG-ATTTAACCAGGGTGGTAACCATACGTAAAATCAAA
* *
1554723 ATGAAAAGAATCTGACCAAGCTGG
65 ATAAAAAGAATCTAACCAAGCTGG
* * * * *
1554747 TAACCATACGTTAGACAAGAAATAGGCAGATTTGACTAGGGTGGTAACCATACGTAAAATTAGAA
1 TAACCATACGTTAGACAAGAAAGAGGCAGATTTAACCAGGGTGGTAACCATACGTAAAATCAAAA
* *
1554812 TAAAAAGAATCTAACCAGGGTGG
66 TAAAAAGAATCTAACCAAGCTGG
1554835 TAACCATACGT
1 TAACCATACGT
1554846 CTAATTAGAA
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 83 0.99
89 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (88 bp):
TAACCATACGTTAGACAAGAAAGAGGCAGATTTAACCAGGGTGGTAACCATACGTAAAATCAAAA
TAAAAAGAATCTAACCAAGCTGG
Found at i:1554792 original size:44 final size:43
Alignment explanation
Indices: 1554431--1554801 Score: 140
Period size: 44 Copynumber: 8.5 Consensus size: 43
1554421 AAATCGTTTA
* * * *
1554431 ACCAGGGTAGTAACCAT-CGTCAAACATG-AATGAGGCAGATTTG
1 ACCAAGGTGGTAACCATACGTTAAACAAGAAAT-AGG-AGATTTG
* * * *
1554474 A-CAAGGGTGGTAACCATATGTCAAATC-AGAATGATAAGA-ATCTG
1 ACCAA-GGTGGTAACCATACGTTAAA-CAAGAA--ATAGGAGATTTG
* * * * * * *
1554518 ACCAAGGTGATAACCATATGTCAAATAGGAAAGAGGTGGATTTG
1 ACCAAGGTGGTAACCATACGTTAAACAAGAAATAGG-AGATTTG
* * *
1554562 ACC-AGAGTAGTAACCATACGTCAAATCGAAATGAAA-A-GA-ATCTG
1 ACCAAG-GTGGTAACCATACGTTAAA-C--AA-GAAATAGGAGATTTG
* *
1554606 ACAAAGGTGGTAACCAT-CGTTAAACAAG-AATGAGGCAAATTTG
1 ACCAAGGTGGTAACCATACGTTAAACAAGAAAT-AGG-AGATTTG
* ** * * * * * * *
1554649 ACTAAGGTCATAACCATATGTTAGATAGGAAAGAGGTGCATTTA
1 ACCAAGGTGGTAACCATACGTTAAACAAGAAATAGGAG-ATTTG
* *
1554693 ACCAGGGTGGTAACCATACGTTAAATCAAAATGAAA-A-GA-ATCTG
1 ACCAAGGTGGTAACCATACGTTAAA-C--AA-GAAATAGGAGATTTG
* *
1554737 ACCAAGCTGGTAACCATACGTTAGACAAGAAATAGGCAGATTTG
1 ACCAAGGTGGTAACCATACGTTAAACAAGAAATAGG-AGATTTG
* *
1554781 ACTAGGGTGGTAACCATACGT
1 ACCAAGGTGGTAACCATACGT
1554802 AAAATTAGAA
Statistics
Matches: 243, Mismatches: 53, Indels: 63
0.68 0.15 0.18
Matches are distributed among these distances:
38 2 0.01
39 1 0.00
40 7 0.03
41 4 0.02
42 8 0.03
43 40 0.16
44 153 0.63
45 10 0.04
46 4 0.02
47 6 0.02
48 8 0.03
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (43 bp):
ACCAAGGTGGTAACCATACGTTAAACAAGAAATAGGAGATTTG
Found at i:1554832 original size:44 final size:44
Alignment explanation
Indices: 1554691--1554855 Score: 154
Period size: 44 Copynumber: 3.8 Consensus size: 44
1554681 GAGGTGCATT
* * *
1554691 TAACCAGGGTGGTAACCATACGTTAAATCAAAATGAAAAGAATC
1 TAACCAGGGTGGTAACCATACGTTAAATTAGAATAAAAAGAATC
* * * * ** *** *
1554735 TGACCAAGCTGGTAACCATACGTTAGACAAGAAATAGGCAG-ATT
1 TAACCAGGGTGGTAACCATACGTTAAATTAG-AATAAAAAGAATC
* * *
1554779 TGACTAGGGTGGTAACCATACGTAAAATTAGAATAAAAAGAATC
1 TAACCAGGGTGGTAACCATACGTTAAATTAGAATAAAAAGAATC
1554823 TAACCAGGGTGGTAACCATACGTCT-AATTAGAA
1 TAACCAGGGTGGTAACCATACGT-TAAATTAGAA
1554856 AAAGGAGAGT
Statistics
Matches: 92, Mismatches: 26, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
43 6 0.07
44 81 0.88
45 5 0.05
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.22
Consensus pattern (44 bp):
TAACCAGGGTGGTAACCATACGTTAAATTAGAATAAAAAGAATC
Found at i:1554833 original size:132 final size:131
Alignment explanation
Indices: 1554516--1554846 Score: 344
Period size: 131 Copynumber: 2.5 Consensus size: 131
1554506 GATAAGAATC
* * * * *** * * * * *
1554516 TGACCAAGGTGATAACCATATGTCAAATAGGAAAGAGGTGGATTTGACCAGAGTAGTAACCATAC
1 TGACTAAGGTCATAACCATACGTAAAATAGGAAAGAAAAGAATCTAACCAGGGTGGTAACCATAC
* *
1554581 GTCAAATCGAAATGAAAAGAATCTGACAAAGGTGGTAACCATCGTTAAACAAGAATGAGGCAAAT
66 GTCAAATCAAAATGAAAAGAATCTGACAAAGCTGGTAACCATCGTTAAACAAGAATGAGGCAAAT
1554646 T
131 T
* * * *** * *
1554647 TGACTAAGGTCATAACCATATGTTAGATAGGAAAGAGGTGCATTTAACCAGGGTGGTAACCATAC
1 TGACTAAGGTCATAACCATACGTAAAATAGGAAAGAAAAGAATCTAACCAGGGTGGTAACCATAC
* * * *
1554712 GTTAAATCAAAATGAAAAGAATCTGACCAAGCTGGTAACCATACGTTAGACAAGAAAT-AGGCAG
66 GTCAAATCAAAATGAAAAGAATCTGACAAAGCTGGTAACCAT-CGTTAAACAAG-AATGAGGCAA
1554776 ATT
129 ATT
* **
1554779 TGACTAGGGTGGTAACCATACGTAAAATTA-GAATA-AAAAGAATCTAACCAGGGTGGTAACCAT
1 TGACTAAGGTCATAACCATACGTAAAA-TAGGAA-AGAAAAGAATCTAACCAGGGTGGTAACCAT
1554842 ACGTC
64 ACGTC
1554847 TAATTAGAAA
Statistics
Matches: 170, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
131 95 0.56
132 69 0.41
133 6 0.04
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (131 bp):
TGACTAAGGTCATAACCATACGTAAAATAGGAAAGAAAAGAATCTAACCAGGGTGGTAACCATAC
GTCAAATCAAAATGAAAAGAATCTGACAAAGCTGGTAACCATCGTTAAACAAGAATGAGGCAAAT
T
Found at i:1554871 original size:44 final size:42
Alignment explanation
Indices: 1554688--1554874 Score: 135
Period size: 44 Copynumber: 4.3 Consensus size: 42
1554678 AAAGAGGTGC
* * *
1554688 ATTTAACCAGGGTGGTAACCATACGTTAAATCAAAATGAAAAGA-
1 ATTTAACCAGGGTGGTAACCATACGTT-AATTAGAA--AAAGGAG
* * * * ** *
1554732 ATCTGACCAAGCTGGTAACCATACGTTAGACAAGAAATAGGCAG
1 ATTTAACCAGGGTGGTAACCATACGTTA-ATTAGAAAAAGG-AG
* * * *
1554776 ATTTGACTAGGGTGGTAACCATACGTAAAATTAGAATAAA-AAG
1 ATTTAACCAGGGTGGTAACCATACGT-TAATTAGAA-AAAGGAG
*
1554819 AATCTAACCAGGGTGGTAACCATACGTCTAATTAGAAAAAGGAG
1 -ATTTAACCAGGGTGGTAACCATACGT-TAATTAGAAAAAGGAG
1554863 AGTTTAACCAGG
1 A-TTTAACCAGG
1554875 TCCTAACACC
Statistics
Matches: 110, Mismatches: 25, Indels: 16
0.73 0.17 0.11
Matches are distributed among these distances:
42 3 0.03
43 8 0.07
44 96 0.87
45 3 0.03
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (42 bp):
ATTTAACCAGGGTGGTAACCATACGTTAATTAGAAAAAGGAG
Found at i:1554928 original size:48 final size:47
Alignment explanation
Indices: 1554861--1554963 Score: 161
Period size: 48 Copynumber: 2.2 Consensus size: 47
1554851 TAGAAAAAGG
* *
1554861 AGAGTTTAACCAGGTCCTAACACCAATACAGTCAAACGAAGGATGAAA
1 AGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAAGGATG-AA
* *
1554909 AGAGTTTGACCAGGCCCTAACACCAATACAGTCAGATGAAGGATGAA
1 AGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAAGGATGAA
1554956 AGAGTTTG
1 AGAGTTTG
1554964 GCTAGATACA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 10 0.20
48 41 0.80
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.18
Consensus pattern (47 bp):
AGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAAGGATGAA
Found at i:1554992 original size:35 final size:35
Alignment explanation
Indices: 1554953--1555226 Score: 350
Period size: 35 Copynumber: 7.8 Consensus size: 35
1554943 GATGAAGGAT
* * *
1554953 GAAAGAGTTTGGCTAGATACAGCCAAATGATGATG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
* * * *
1554988 GAAAGAGTTTGACTAGGTATAGTTAAACGATGACG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
* *
1555023 GAAATAGTTTGACTAGGTACAGTCAAACGATGATG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
*
1555058 GAAAGAGTTTGACAAGATACAGTCAAACGATGATG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
* *
1555093 GAAATAGTTTGACTAGGTACAGTCAAACGATGATG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
* *
1555128 GAAAGAGTTTGACAAGATACAGTCAAATGATGATG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
* * * * * *
1555163 GAAAAAATTTGACCAGATATAATCAAATGATGATG
1 GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
* *
1555198 GAAAAAGTTTGACTAGATATAGTCAAACG
1 GAAAGAGTTTGACTAGATACAGTCAAACG
1555227 CGAAAGTGAT
Statistics
Matches: 209, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 209 1.00
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.24
Consensus pattern (35 bp):
GAAAGAGTTTGACTAGATACAGTCAAACGATGATG
Found at i:1555538 original size:93 final size:92
Alignment explanation
Indices: 1555345--1555525 Score: 260
Period size: 93 Copynumber: 2.0 Consensus size: 92
1555335 AGCTAAAAGA
* *
1555345 GAGGGATATGATTGGAAATGAATGGTCGGGATACCTTTACCCTAAGAAAATATGGCTTTGTGATG
1 GAGGGATATCATTGGAAATGAATGGTCAGGATACCTTTACCCTAAGAAAATATGGCTTTGTGATG
1555410 CATCAATACCATCTAATGGTTGGGAAT
66 CATCAATACCATCTAATGGTTGGGAAT
* *
1555437 GAGGGATATCATTGGGGAATGAATGGTCAGGATATCC-TTGCCCT-AGTAAAAT-TAGGCTTTGT
1 GAGGGATATCATT-GGAAATGAATGGTCAGGATA-CCTTTACCCTAAG-AAAATAT-GGCTTTGT
*
1555499 GATGCATCAATACCATCTAGTGGTTGG
62 GATGCATCAATACCATCTAATGGTTGG
1555526 ATGAACGGGA
Statistics
Matches: 80, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
92 15 0.19
93 63 0.79
94 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (92 bp):
GAGGGATATCATTGGAAATGAATGGTCAGGATACCTTTACCCTAAGAAAATATGGCTTTGTGATG
CATCAATACCATCTAATGGTTGGGAAT
Found at i:1557166 original size:17 final size:15
Alignment explanation
Indices: 1557130--1557160 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1557120 GAGCTTCATT
*
1557130 CTTTTCTTTTTTTGC
1 CTTTTCTTTTTTTCC
1557145 CTTTTCTTTTTTTCC
1 CTTTTCTTTTTTTCC
1557160 C
1 C
1557161 CCTTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (15 bp):
CTTTTCTTTTTTTCC
Found at i:1560010 original size:13 final size:13
Alignment explanation
Indices: 1559992--1560018 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1559982 ACATTTGGTC
1559992 ATGTATCGATACA
1 ATGTATCGATACA
1560005 ATGTATCGATACA
1 ATGTATCGATACA
1560018 A
1 A
1560019 AAGTTAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1560872 original size:13 final size:13
Alignment explanation
Indices: 1560854--1560879 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1560844 ACATTTGGTC
1560854 ATGTATCGATACA
1 ATGTATCGATACA
1560867 ATGTATCGATACA
1 ATGTATCGATACA
1560880 TCTTGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1560874 original size:33 final size:32
Alignment explanation
Indices: 1560832--1560899 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
1560822 CGTTACAAGC
1560832 CAATGTATCGATACAT-TTGGTCATGTATCGATA
1 CAATGTATCGATACATCTT-GT-ATGTATCGATA
1560865 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
1560897 CAA
1 CAA
1560900 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 18 0.53
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:1563371 original size:155 final size:155
Alignment explanation
Indices: 1563074--1563493 Score: 431
Period size: 156 Copynumber: 2.7 Consensus size: 155
1563064 AAAAGTGCCT
* * * **
1563074 CTAT-GGGATA-CTCTCGACATAAAAGTACCT-GATACCCCTAAAGGACCAAAAAAGGATTTTA-
1 CTATGGGGATACCT-TCGACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAAGGA---TAG
* * * **
1563135 AAAAGGATGAACCTATCCTAAA-ATCTACCTTCGGCATAAAAGCGGACCCGTTGACAACCTAGGA
62 AAATGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGGACCCAATGACAACCTAGGA
***
1563199 TTCAGTTTTGAAAAATTATGAAAATACCC
127 TTCAGTTCAAAAAAATTATGAAAATACCC
* * *
1563228 CTA-GGGGATACCTTCGACATAAAAGTATCTCGGTAACCCTAAAAGACTTTAAAATGATAGAAAT
1 CTATGGGGATACCTTCGACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAAGGATAGAAAT
* *
1563292 GGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGGACCCAATGACGATCTAGGAGTT
66 -GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGGACCCAATGACAACCTAGGA-TT
* * *
1563357 -GGTTCAAAAAAATTATGAAAATGCCT
129 CAGTTCAAAAAAATTATGAAAATACCC
* * * * * * *
1563383 TTATGGGTATACCTTCGACGTGAAAGTATCTCGATAACCCTAAAGGACTTAAAAAGGATATAGAT
1 CTATGGGGATACCTTCGACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAAGGATAGAAAT
* * * * *
1563448 AGAGTGAACTTATCCTAAATACTCATCTTCGGCATAAAAGTGGACC
66 GGA-TGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGGACC
1563494 TAATAGTTTC
Statistics
Matches: 221, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
152 2 0.01
153 3 0.01
154 43 0.19
155 81 0.37
156 92 0.42
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (155 bp):
CTATGGGGATACCTTCGACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAAGGATAGAAAT
GGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGGACCCAATGACAACCTAGGATTCA
GTTCAAAAAAATTATGAAAATACCC
Found at i:1563465 original size:156 final size:155
Alignment explanation
Indices: 1563047--1563493 Score: 474
Period size: 155 Copynumber: 2.9 Consensus size: 155
1563037 TAAAAGACTA
* * * *
1563047 AGTTCAAGGAAAATTA-CAAAAGTGCCTCTATGGGATA-CTCTCGACATAAAAGTACCT-GATAC
1 AGTTCAA-AAAAATTATGAAAA-TGCCTCTATGGGATACCT-TCGACATAAAAGTATCTCGATAA
** * * * *
1563109 CCCTAAAGGACCAAAAAAGGATTTTAAAAAGGATGAACCTATCCTAAA-ATCTACCTTCGGCATA
63 CCCTAAAGGACTTAAAAAGGA-TATAAATAGGATGAACCTATCCTAAATACCCACCTTCGGCATA
**
1563173 AAAGCGGACCCGTTGACAACCTAGGATTC
127 AAAGCGGACCCAATGACAACCTAGGATTC
*** * * * *
1563202 AGTTTTGAAAAATTATGAAAATACCCCTAGGGGATACCTTCGACATAAAAGTATCTCGGTAACCC
1 AGTTCAAAAAAATTATGAAAATGCCTCTATGGGATACCTTCGACATAAAAGTATCTCGATAACCC
* * * * *
1563267 TAAAAGACTTTAAAATGATAGAAATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
66 TAAAGGACTTAAAAAGGATATAAATAGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
* *
1563332 CGGACCCAATGACGATCTAGGAGTT-
131 CGGACCCAATGACAACCTAGGA-TTC
* * * *
1563357 GGTTCAAAAAAATTATGAAAATGCCTTTATGGGTATACCTTCGACGTGAAAGTATCTCGATAACC
1 AGTTCAAAAAAATTATGAAAATGCCTCTATGGG-ATACCTTCGACATAAAAGTATCTCGATAACC
* * * *
1563422 CTAAAGGACTTAAAAAGGATATAGATA-GAGTGAACTTATCCTAAATACTCATCTTCGGCATAAA
65 CTAAAGGACTTAAAAAGGATATAAATAGGA-TGAACCTATCCTAAATACCCACCTTCGGCATAAA
*
1563486 AGTGGACC
129 AGCGGACC
1563494 TAATAGTTTC
Statistics
Matches: 238, Mismatches: 47, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
154 57 0.24
155 92 0.39
156 89 0.37
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (155 bp):
AGTTCAAAAAAATTATGAAAATGCCTCTATGGGATACCTTCGACATAAAAGTATCTCGATAACCC
TAAAGGACTTAAAAAGGATATAAATAGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
CGGACCCAATGACAACCTAGGATTC
Found at i:1564438 original size:19 final size:19
Alignment explanation
Indices: 1564414--1564450 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
1564404 AACAATTTAT
1564414 TTATTATT-TTATTTTATTG
1 TTATTATTATT-TTTTATTG
1564433 TTATTATTATTTTTTATT
1 TTATTATTATTTTTTATT
1564451 TTTGAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TTATTATTATTTTTTATTG
Found at i:1566313 original size:167 final size:167
Alignment explanation
Indices: 1566099--1566579 Score: 599
Period size: 167 Copynumber: 2.9 Consensus size: 167
1566089 GGGGATTTTA
* *
1566099 AAGAAAAAAATTCAAAAACTCATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAATCAA
1 AAGAAAAAAAATCAAAAACTAATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAT-AA
* * * *
1566164 ATGATAATGTTTGATGAATTCTAAAAGCTAAAAACCGAGAAAAATCCCCTCGAAAAAATTTACGG
65 ATGATAATGTTTGATGAATTTTAAAAACTAAAAACCAAGAAAAATCCCCTCGAAAAAATTTACAG
*
1566229 AGAAGAAAACACCGTATTTAGGAAAAAAAAG-AGTTTC
130 AGAAGAAAACACCGTATTTAAGAAAAAAAAGAAGTTTC
* * *
1566266 AAGAAAAAAAATCAAAAACTAAAGAAAATGGATGAATTTTTGAAAACTAAATTAATGTGAGATAA
1 AAGAAAAAAAATCAAAAACTAATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGA-ATAA
* * * * * * *
1566331 ATAATGATGCTTGATGAATTTTAAAAATTGAAAATCAAGAAAAATCCCCTCGAAAAACTTTACAG
65 ATGATAATGTTTGATGAATTTTAAAAACTAAAAACCAAGAAAAATCCCCTCGAAAAAATTTACAG
* **
1566396 AGTAGAAAACACCGTATTTAAGAAAAAATGGAAGTTTC
130 AGAAGAAAACACCGTATTTAAGAAAAAAAAGAAGTTTC
* * * *
1566434 AAGGAAAAAAATCAAAAA-TGAATGCAAATGAATGAATTTTTTAAAACTGAATTAATATGAAATA
1 AAGAAAAAAAATCAAAAACT-AATGAAAATGAATGAATTTTTGAAAACTAAATTAATATG-AATA
* * ** * * *
1566498 AATGATAATGTTTGATGGATTTTAAAAATTAAAAATTAAGAAAAATCTTCC-CAAAAAAATCTAC
64 AATGATAATGTTTGATGAATTTTAAAAACTAAAAACCAAGAAAAATC-CCCTCGAAAAAATTTAC
* *
1566562 AGAGAAAAAAACCCCGTA
128 AGAGAAGAAAACACCGTA
1566580 ATTTGAAAAT
Statistics
Matches: 269, Mismatches: 40, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
167 139 0.52
168 127 0.47
169 3 0.01
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.25
Consensus pattern (167 bp):
AAGAAAAAAAATCAAAAACTAATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAATAAA
TGATAATGTTTGATGAATTTTAAAAACTAAAAACCAAGAAAAATCCCCTCGAAAAAATTTACAGA
GAAGAAAACACCGTATTTAAGAAAAAAAAGAAGTTTC
Found at i:1573665 original size:13 final size:12
Alignment explanation
Indices: 1573647--1573684 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
1573637 ATAATCCCCT
1573647 TGTATCGATACA
1 TGTATCGATACA
1573659 GTGTATCGATACCA
1 -TGTATCGATA-CA
1573673 TGTATCGATACA
1 TGTATCGATACA
1573685 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 2 0.08
13 20 0.83
14 2 0.08
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:1575766 original size:15 final size:15
Alignment explanation
Indices: 1575746--1575776 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1575736 ATTTCGTTTG
*
1575746 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1575761 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1575776 G
1 G
1575777 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1581485 original size:13 final size:13
Alignment explanation
Indices: 1581467--1581492 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1581457 CAATTTTTTG
1581467 TGTATCGATACAT
1 TGTATCGATACAT
1581480 TGTATCGATACAT
1 TGTATCGATACAT
1581493 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1581504 original size:32 final size:33
Alignment explanation
Indices: 1581447--1581510 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1581437 TACAAGCCAA
**
1581447 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
1581480 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
1581511 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:1582232 original size:17 final size:17
Alignment explanation
Indices: 1582210--1582245 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
1582200 CCTTATAGAG
* *
1582210 ATCATATTAAAAACTAA
1 ATCATAGTAAAAAATAA
1582227 ATCATAGTAAAAAATAA
1 ATCATAGTAAAAAATAA
1582244 AT
1 AT
1582246 TAAATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (17 bp):
ATCATAGTAAAAAATAA
Found at i:1588909 original size:20 final size:21
Alignment explanation
Indices: 1588886--1588932 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
1588876 ATCTTGATGC
1588886 CATTTT-TACCCATGTT-CATG
1 CATTTTGT-CCCATGTTCCATG
*
1588906 CATTTTGTGCCATGTTCCATG
1 CATTTTGTCCCATGTTCCATG
1588927 CATTTT
1 CATTTT
1588933 AATATATCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.17, C:0.23, G:0.13, T:0.47
Consensus pattern (21 bp):
CATTTTGTCCCATGTTCCATG
Found at i:1590593 original size:27 final size:27
Alignment explanation
Indices: 1590542--1590593 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1590532 GTTTGTCATT
* * *
1590542 AAGGGGATACTCTAACCCTATCTTTTC
1 AAGGAGATACTCTAACCCCACCTTTTC
1590569 AAGGAGATACTCTAACCCCACCTTT
1 AAGGAGATACTCTAACCCCACCTTT
1590594 CAACTATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (27 bp):
AAGGAGATACTCTAACCCCACCTTTTC
Found at i:1590596 original size:102 final size:103
Alignment explanation
Indices: 1590369--1590596 Score: 237
Period size: 103 Copynumber: 2.2 Consensus size: 103
1590359 TATTCATGAG
* * * *
1590369 GATACTCCAACCCCGCTCTTT-GAAATTTGTCAAGATTGGAACTTTTCCTTTATCAAAATCATTT
1 GATACTCCAACCCCAC-CTTTCAAAATTTATCAAAATTGGAACTTTTCCTTTATCAAAATCATTT
* * *
1590433 ATCATCCATGGGGACACTCTAACCCCAACCTTTCGAGGG
65 ATCATCCAAGGGGACACTCTAACCCCAACCTTTCAAGGA
** * * **
1590472 GATACTCCAA-CCCTGCTCTTCAAAATTTATCAAAATTTGAACTTTTTCTTTATCAAAATTGTTT
1 GATACTCCAACCCCACCT-TTCAAAATTTATCAAAATTGGAACTTTTCCTTTATCAAAATCATTT
* * * * * *
1590536 GTCAT-TAAGGGGATACTCTAACCCTATCTTTTCAAGGA
65 ATCATCCAAGGGGACACTCTAACCCCAACCTTTCAAGGA
*
1590574 GATACTCTAACCCCACCTTTCAA
1 GATACTCCAACCCCACCTTTCAA
1590597 CTATAATTAA
Statistics
Matches: 101, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
101 2 0.02
102 44 0.44
103 55 0.54
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (103 bp):
GATACTCCAACCCCACCTTTCAAAATTTATCAAAATTGGAACTTTTCCTTTATCAAAATCATTTA
TCATCCAAGGGGACACTCTAACCCCAACCTTTCAAGGA
Found at i:1591708 original size:21 final size:21
Alignment explanation
Indices: 1591683--1591722 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1591673 AATTTTTTTT
1591683 TATTTTA-TTTATTTTATTAGA
1 TATTTTAGTTTA-TTTATTAGA
1591704 TATTTTAGTTTATTTATTA
1 TATTTTAGTTTATTTATTA
1591723 TAATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TATTTTAGTTTATTTATTAGA
Found at i:1591730 original size:21 final size:21
Alignment explanation
Indices: 1591683--1591732 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
1591673 AATTTTTTTT
*
1591683 TATTTTATTTATTTTATTAGA
1 TATTTTATTTATTTTATTAAA
1591704 TATTTTAGTTTA-TTTATTATAA
1 TATTTTA-TTTATTTTATTA-AA
*
1591726 TTTTTTA
1 TATTTTA
1591733 ATGTTTCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (21 bp):
TATTTTATTTATTTTATTAAA
Found at i:1593272 original size:16 final size:16
Alignment explanation
Indices: 1593253--1593291 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
1593243 GATTTCGGGC
1593253 TTTTTCGGATTC-GAAT
1 TTTTTCGGATTCAG-AT
*
1593269 TTTTTCAGATTCAGAT
1 TTTTTCGGATTCAGAT
1593285 TTTTTCG
1 TTTTTCG
1593292 AATTTCAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.18, C:0.13, G:0.15, T:0.54
Consensus pattern (16 bp):
TTTTTCGGATTCAGAT
Found at i:1599477 original size:14 final size:14
Alignment explanation
Indices: 1599458--1599502 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
1599448 TTTATATTTA
1599458 ATATTTATTTAAAT
1 ATATTTATTTAAAT
**
1599472 ATATTTATAAAAAT
1 ATATTTATTTAAAT
1599486 ATATTT-TTTAAAT
1 ATATTTATTTAAAT
1599499 ATAT
1 ATAT
1599503 AAAAAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATATTTATTTAAAT
Found at i:1599480 original size:27 final size:27
Alignment explanation
Indices: 1599443--1599502 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
1599433 AATATCTATT
**
1599443 ATATATTTATATTTAATAT-TTATTTAA
1 ATATATTTATA-AAAATATATTATTTAA
*
1599470 ATATATTTATAAAAATATATTTTTTAA
1 ATATATTTATAAAAATATATTATTTAA
1599497 ATATAT
1 ATATAT
1599503 AAAAAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
ATATATTTATAAAAATATATTATTTAA
Found at i:1600550 original size:20 final size:21
Alignment explanation
Indices: 1600525--1600563 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1600515 TTATTATTAA
1600525 AAAATAAAA-AATAATAGATG
1 AAAATAAAATAATAATAGATG
*
1600545 AAAATAAAATATTAATAGA
1 AAAATAAAATAATAATAGA
1600564 AATTATAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (21 bp):
AAAATAAAATAATAATAGATG
Found at i:1602182 original size:7 final size:6
Alignment explanation
Indices: 1602154--1602178 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1602144 TCTACTTTCT
1602154 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
1602179 ATAATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:1603641 original size:16 final size:15
Alignment explanation
Indices: 1603615--1603663 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
1603605 TAAAGATTAA
1603615 ATTTT-AAAAATATAT
1 ATTTTAAAAAATA-AT
1603630 ATTTTAAAAAATAA-
1 ATTTTAAAAAATAAT
1603644 ATTATATAAAAAATAAT
1 ATT-T-TAAAAAATAAT
1603661 ATT
1 ATT
1603664 AACAAATCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.10
15 7 0.23
16 17 0.57
17 3 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTTAAAAAATAAT
Found at i:1603665 original size:29 final size:29
Alignment explanation
Indices: 1603612--1603670 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
1603602 TAATAAAGAT
*
1603612 TAAATTTTAAAAATATATATTTTAAAAAA
1 TAAATTTTAAAAATATATATATTAAAAAA
*
1603641 TAAATTATATAAAAA-ATA-ATATTAACAAA
1 TAAATT-T-TAAAAATATATATATTAAAAAA
1603670 T
1 T
1603671 CTAAATAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 16 0.62
30 4 0.15
31 6 0.23
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (29 bp):
TAAATTTTAAAAATATATATATTAAAAAA
Found at i:1603717 original size:41 final size:39
Alignment explanation
Indices: 1603658--1603759 Score: 100
Period size: 41 Copynumber: 2.5 Consensus size: 39
1603648 TATAAAAAAT
* * * *
1603658 AATATTAACAAATCTAAATAGATTTAAAGTATT-TATTTATA
1 AATATAAATAAATATAAATAAATTTAAA--ATTATATTTA-A
*
1603699 AATATAAATAAATTTAAATAAAATTTAAAATTATATTTAA
1 AATATAAATAAATATAAAT-AAATTTAAAATTATATTTAA
1603739 AAT-TAAAATAAATATAAATAA
1 AATAT-AAATAAATATAAATAA
1603760 TATTAATATC
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
39 3 0.06
40 20 0.38
41 22 0.42
42 8 0.15
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (39 bp):
AATATAAATAAATATAAATAAATTTAAAATTATATTTAA
Found at i:1604555 original size:28 final size:26
Alignment explanation
Indices: 1604481--1604559 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 26
1604471 TTAATCATTT
*
1604481 TAAATATAAAAT-AATTAT-ATAAT-
1 TAAATATAATATAAATTATAATAATA
1604504 TAAATATAATATAAA--A-AATAATA
1 TAAATATAATATAAATTATAATAATA
1604527 TAAATATAATATAAATTATTAATATATA
1 TAAATATAATATAAATTA-TAATA-ATA
1604555 TAAAT
1 TAAAT
1604560 TTATTTTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
22 6 0.13
23 26 0.55
24 2 0.04
25 1 0.02
27 4 0.09
28 8 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TAAATATAATATAAATTATAATAATA
Found at i:1604563 original size:18 final size:17
Alignment explanation
Indices: 1604529--1604575 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
1604519 AAATAATATA
1604529 AATATAATATAAATTATT
1 AATAT-ATATAAATTATT
1604547 AATATATATAAATTTATT
1 AATATATATAAA-TTATT
**
1604565 TTTATATATAA
1 AATATATATAA
1604576 TATAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATATATATAAATTATT
Found at i:1605735 original size:11 final size:10
Alignment explanation
Indices: 1605710--1605734 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1605700 TCAATTTTAA
1605710 TTTTTAATTT
1 TTTTTAATTT
1605720 TTTTTAATTT
1 TTTTTAATTT
1605730 TTTTT
1 TTTTT
1605735 TTCACCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTAATTT
Found at i:1607669 original size:10 final size:10
Alignment explanation
Indices: 1607649--1607677 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1607639 TTACAATCCA
1607649 TAAAA-AAAT
1 TAAAATAAAT
1607658 TAAAATAAAT
1 TAAAATAAAT
1607668 TAAAATAAAT
1 TAAAATAAAT
1607678 CGGCCGCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAATAAAT
Found at i:1609061 original size:22 final size:22
Alignment explanation
Indices: 1609018--1609105 Score: 169
Period size: 22 Copynumber: 4.0 Consensus size: 22
1609008 AGTGTGAACA
1609018 GTATCGATACATGAA-AGTGAT
1 GTATCGATACATGAACAGTGAT
1609039 GTATCGATACATGAACAGTGAT
1 GTATCGATACATGAACAGTGAT
1609061 GTATCGATACATGAACAGTGAT
1 GTATCGATACATGAACAGTGAT
1609083 GTATCGATACATGAACAGTGAT
1 GTATCGATACATGAACAGTGAT
1609105 G
1 G
1609106 AATAGTGATG
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
21 15 0.23
22 51 0.77
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.27
Consensus pattern (22 bp):
GTATCGATACATGAACAGTGAT
Found at i:1609112 original size:10 final size:10
Alignment explanation
Indices: 1609093--1609123 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1609083 GTATCGATAC
1609093 ATGAACAGTG
1 ATGAACAGTG
*
1609103 ATGAATAGTG
1 ATGAACAGTG
1609113 ATGAACAGTG
1 ATGAACAGTG
1609123 A
1 A
1609124 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:1611819 original size:102 final size:102
Alignment explanation
Indices: 1611661--1611942 Score: 374
Period size: 102 Copynumber: 2.8 Consensus size: 102
1611651 CAAGTTTTCT
* * *
1611661 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCATAAT
1 CAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCCATAAT
* * *
1611726 CGGGGACACTCCAACTCCGATTTTA-TTCTCAGAACAC
66 CGGGGATACTCCAACTCCGATTGTATTTC-CAAAACAC
** *
1611763 CAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCTATAA
1 CAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACATTAATTTTCCATAA
*
1611827 TCGGGGATACTCCAACTCCGATTGTATTTCCAAAATAC
65 TCGGGGATACTCCAACTCCGATTGTATTTCCAAAACAC
* * * *
1611865 TAATTTTTCATC-ATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATTAA-TTTCTCATA
1 CAATTTTCCA-CAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTC-CATA
1611928 ATCGGGGATACTCCA
64 ATCGGGGATACTCCA
1611943 TCCCCGTTAT
Statistics
Matches: 158, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
101 5 0.03
102 148 0.94
103 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (102 bp):
CAATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCCATAAT
CGGGGATACTCCAACTCCGATTGTATTTCCAAAACAC
Found at i:1611939 original size:153 final size:153
Alignment explanation
Indices: 1611661--1611948 Score: 366
Period size: 153 Copynumber: 1.9 Consensus size: 153
1611651 CAAGTTTTCT
* * * *
1611661 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCATAAT
1 CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCATAAT
* *
1611726 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACACCAATTTTCCACAATCGGGGATACTCCAA
66 CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
1611791 CCCCGGTTTTATTTTCAAAACAC
131 CCCCGGTTTTATTTTCAAAACAC
* * * * *
1611814 CAATTTT-CTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACTAATTTTTCATCA
1 CAATTTTGC-ATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCATAA
* * * ** *
1611878 TCGGGGATACTCCAACCCCGTTTTTATT-TCTAAAATATTAA-TTTCTCATAATCGGGGATACTC
65 TCGGGGACACTCCAACCCCGATTTTATTCTC-AAAACACCAATTTTC-CACAATCGGGGATACTC
*
1611941 CATCCCCG
128 CAACCCCG
1611949 TTATTTTCGA
Statistics
Matches: 114, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
152 7 0.06
153 107 0.94
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (153 bp):
CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCATAAT
CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
CCCCGGTTTTATTTTCAAAACAC
Found at i:1611950 original size:51 final size:50
Alignment explanation
Indices: 1611662--1611948 Score: 317
Period size: 51 Copynumber: 5.6 Consensus size: 50
1611652 AAGTTTTCTC
* * *
1611662 AATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATT
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * *
1611713 AATTTTCCATAATCGGGGACACTCCAACTCCGATTTTA-TTCTCAGAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * *
1611764 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * * *
1611815 AATTTTCTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACT
1 AATTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * *
1611866 AATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATT
1 AA-TTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
*
1611917 AATTTCTCATAATCGGGGATACTCCATCCCCG
1 AATTT-TCATAATCGGGGATACTCCAACCCCG
1611949 TTATTTTCGA
Statistics
Matches: 203, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
50 8 0.04
51 188 0.93
52 7 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
AATTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
Found at i:1612031 original size:76 final size:78
Alignment explanation
Indices: 1611880--1612032 Score: 229
Period size: 79 Copynumber: 2.0 Consensus size: 78
1611870 TTTCATCATC
* * * * *
1611880 GGGGATACTCCAACCCCGTTTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCT-ATAATCGGGGATACTCCAAC
1611945 CCCGTTATTTTCGA
65 CCCGTTATTTTCGA
*
1611959 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAA-TTCT-TCATCGGGGATACTCCAACC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTATAATCGGGGATACTCCAACC
1612022 CCGTTATTTTC
66 CCGTTATTTTC
1612033 ATAATCAGGG
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
76 29 0.43
78 4 0.06
79 35 0.51
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTATAATCGGGGATACTCCAACC
CCGTTATTTTCGA
Found at i:1624503 original size:1 final size:1
Alignment explanation
Indices: 1624497--1624559 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
1624487 CTTCTCTTCC
* * * * * * **
1624497 AAAAAAAAAAAGAAAAAACAAAAAAACAAACAAAAAAAAGAAGAAGGAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1624560 GGAACTTGCT
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.87, C:0.05, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:1625800 original size:55 final size:55
Alignment explanation
Indices: 1625517--1627019 Score: 1640
Period size: 55 Copynumber: 26.4 Consensus size: 55
1625507 TCCCCTTCCG
* *
1625517 CTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCA
* *
1625577 C-CTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCA
* * *
1625636 C-CTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCA
* * *
1625695 C-ATTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1625755 CCTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1625810 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCAC-CTAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACAC-AAGTTGGTGGCA
* * *
1625865 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1625925 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
*
1625980 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626035 CCTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626090 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626145 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626205 TTTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626260 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626315 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626375 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1626430 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTAGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626485 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1626540 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAATCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626600 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
*
1626655 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1626710 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1626765 -TTTTCTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1626820 -TTTTCTAGTCCTCAAAGAGCAGGATGCTTTCTTTTTCCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGGA--C--AC-CTTT-CAAAGCCCACACAAGTTGGTGGCA
* *
1626881 C-CTTCTAGTCCTCAAAGAGCAGGACACCTCACCTTTCAAAGGCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGG--A---CACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1626941 CCTTTT-AGTCCTCAGAGAGCAAGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 -CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1626996 CTTTTTAGTCCTCAATGAGCAGGA
1 CTTTTCAGTCCTCAAAGAGCAGGA
1627020 TACACTTTAT
Statistics
Matches: 1274, Mismatches: 106, Indels: 131
0.84 0.07 0.09
Matches are distributed among these distances:
54 105 0.08
55 686 0.54
56 11 0.01
57 1 0.00
58 1 0.00
59 142 0.11
60 167 0.13
61 151 0.12
62 3 0.00
63 1 0.00
64 5 0.00
65 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (55 bp):
CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1625864 original size:170 final size:166
Alignment explanation
Indices: 1625523--1627027 Score: 1718
Period size: 170 Copynumber: 8.8 Consensus size: 166
1625513 TCCGCTTTTT
**
1625523 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTCAGTCC
1 AGTCCTCAAAGAGCAGGA---C--TTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCC
* **
1625587 TCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAA
61 TCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAA
** * *
1625651 GAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCA-CATTC
121 GAGCAGGA---C-TACCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTC
*
1625700 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
1 AGTCCTCAAAGAGCAGGA--C---TTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTC
* * *
1625765 CCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGC
60 CTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGC
*
1625830 AGGAC-ACCTTTTAAAGCCCAC-CTAAGTTGGTGGCA-CCTTC
125 AGGACTACCTTTTAAAGCCCACAC-AAGTTGGTGGCATCTTTC
1625870 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTC
1 AGTCCTCAAAGAGCAGGA--C---TTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTC
* * *
1625935 CCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGC
60 CTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGC
* *
1626000 AGGAC-ACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
125 AGGACTACCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTC
* * *
1626041 AGTCCCCAAAGAGCAGGAC-TCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAA
1 AGTCCTCAAAGAGCAGGACTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAA
* * **
1626105 AGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGAT
65 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA-
** *
1626169 GCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
129 -C--TACCTTTT-AAAGCCCACACAAGTTGGTGGCATCTTTC
* * *
1626211 AGTCCCCAAAGAGCAGGAC-TCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAA
1 AGTCCTCAAAGAGCAGGACTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAA
* * **
1626275 AGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGAT
65 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA-
** *
1626339 GCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
129 -C--TACCTTTT-AAAGCCCACACAAGTTGGTGGCATCTTTC
* * *
1626381 AGTCCCCAAAGAGCAGGAC-ACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAA
1 AGTCCTCAAAGAGCAGGACTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAA
* *
1626445 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTAGCATTTTCCAATCCTCAAAGAGCAGGAC
65 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC
* *
1626510 -ACCTTTTAAAGCCCACCCAAGTTGGTGGCA-CCTTC
130 TACCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTC
*
1626545 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAATCCCACACAAGTTGGTGGCATTTTTCAGTC
1 AGTCCTCAAAGAGCAGGA--C---TTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTC
* * *
1626610 CCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGC
60 CTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGC
* *
1626675 AGGAC-ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
125 AGGACTACCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTC
* *
1626716 AGTCCCCAAAGAGCAGGAC-ACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGCAGGACTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTC-AGTCCTCAA
*
1626780 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGAT
65 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA-
* * *
1626845 GCTTTCTTTTTCCAAAGCCCACACAAGTTGGTGGCA-CCTTC
129 -C-TACCTTTT--AAAGCCCACACAAGTTGGTGGCATCTTTC
* * *
1626886 TAGTCCTCAAAGAGCAGGACACCTCACCTTTCAAAGGCCACACAAGTTGGTGGCACCTTTT-AGT
1 -AGTCCTCAAAGAGCAGG--A-CT-TCTTTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCAGT
* * * * * *
1626950 CCTCAGAGAGCAAGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGTCCTCAATGA
59 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGA
1627014 GCAGGA-TACACTTT
123 GCAGGACTAC-CTTT
1627028 ATTTTCCTTT
Statistics
Matches: 1210, Mismatches: 78, Indels: 84
0.88 0.06 0.06
Matches are distributed among these distances:
164 47 0.04
165 195 0.16
166 7 0.01
167 1 0.00
169 12 0.01
170 616 0.51
171 103 0.09
172 3 0.00
173 4 0.00
174 26 0.02
175 18 0.01
176 92 0.08
177 31 0.03
178 31 0.03
179 24 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (166 bp):
AGTCCTCAAAGAGCAGGACTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAA
GAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACT
ACCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTC
Found at i:1625984 original size:28 final size:29
Alignment explanation
Indices: 1625896--1626094 Score: 97
Period size: 28 Copynumber: 7.2 Consensus size: 29
1625886 GATGCTTTTT
1625896 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
1625925 TTTTTC--AGTCCC-CA-AAG-AGCAGGACA
1 CTTTTCAAAG-CCCACACAAGTTGGTGG-CA
1625951 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * **
1625980 -TTTTCCAA-TCCTCA-AAG-AGCAGGACA
1 CTTTTCAAAGCCCACACAAGTTGGTGG-CA
*
1626006 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
1626035 CCTTTC--AGTCCC-CA-AAG-AGCAGG-A
1 CTTTTCAAAG-CCCACACAAGTTGGTGGCA
1626059 CTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CT--TTTCAAAGCCCACACAAGTTGGTGGCA
1626090 -TTTTC
1 CTTTTC
1626095 CAATCCTCAA
Statistics
Matches: 121, Mismatches: 28, Indels: 43
0.63 0.15 0.22
Matches are distributed among these distances:
24 2 0.02
25 9 0.07
26 22 0.18
27 24 0.20
28 29 0.24
29 24 0.20
30 10 0.08
31 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (29 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1626021 original size:225 final size:225
Alignment explanation
Indices: 1625525--1627020 Score: 1895
Period size: 225 Copynumber: 6.6 Consensus size: 225
1625515 CGCTTTTTAG
* **
1625525 TCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCA
1 TCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCA
*
1625590 AAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGC
61 AAGAGCAGGAC-AC----CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGC
* * * ** *
1625655 AGGACGCCTTTTCTTTT-AAAGCCCACCCAAGTTGGTGGCACATTCAGTCCTCAAAGAGCAGGAT
121 AGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCCCAAAGAGCAGGA-
* * *
1625719 GCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAG
185 GC---TACTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAA
* * *
1625763 TCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGA
1625828 GCAGGACACCTTTTAAAGCCCAC-CTAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCT
65 GCAGGACACCTTTTAAAGCCCACAC-AAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCT
1625892 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGA-C-ACTTT
129 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCCCAAAGAGCAGGAGCTACTTT
1625955 TCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
193 TCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
* *
1625988 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGA
* * ** *
1626053 GCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGA--C-
65 GCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGATGCT
** * ** * *
1626115 --ACCTTTT-AAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTC
129 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCCCAAAGAGCAGGA-GC---TAC
* *
1626177 TTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAG
190 TTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
* * *
1626213 TCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGA
*
1626278 GCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTT
65 GCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTT
1626343 TTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGA-C-ACTTTT
130 TTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCCCAAAGAGCAGGAGCTACTTTT
1626406 CAAAGCCCACACAAGTTGGTGGCATTTTCCAA
194 CAAAGCCCACACAAGTTGGTGGCATTTTCCAA
* *
1626438 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTAGCATTTTCCAATCCTCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGA
*
1626503 GCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTT
65 GCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTT
*
1626568 TTTCTTTTCAAATCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGA-C-ACTTTT
130 TTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCCCAAAGAGCAGGAGCTACTTTT
1626631 CAAAGCCCACACAAGTTGGTGGCATTTTCCAA
194 CAAAGCCCACACAAGTTGGTGGCATTTTCCAA
*
1626663 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGA
**
1626728 GCAGGACA-CTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGA--C
65 GCAGGACACCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGATGC
* * * *
1626790 ----ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGATGCTTTC
128 TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTC-AGTCCCCAAAGAGCAGGA-GC-TAC
** * *
1626851 TTTTTCCAAAGCCCACACAAGTTGGTGGCACCTTCTAG
190 -TTTT-CAAAGCCCACACAAGTTGGTGGCATTTTCCAA
*
1626889 TCCTCAAAGAGCAGGACACCTCACCTTTCAAAGGCCACACAAGTTGGTGGCACCTTTT-AGTCCT
1 TCCTCAAAGAGCAGG--A---CACCTTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCAGTCCT
* * * * * * * *
1626953 CAGAGAGCAAGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAATGAGCAG
59 CAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAG
1627018 GAT
123 GAT
1627021 ACACTTTATT
Statistics
Matches: 1133, Mismatches: 84, Indels: 88
0.87 0.06 0.07
Matches are distributed among these distances:
219 25 0.02
220 66 0.06
221 6 0.01
222 1 0.00
224 32 0.03
225 599 0.53
226 88 0.08
228 2 0.00
229 67 0.06
230 44 0.04
231 125 0.11
232 11 0.01
233 26 0.02
234 19 0.02
237 4 0.00
238 18 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (225 bp):
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAG
CAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTT
TTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCCCAAAGAGCAGGAGCTACTTTTCA
AAGCCCACACAAGTTGGTGGCATTTTCCAA
Found at i:1626434 original size:28 final size:29
Alignment explanation
Indices: 1626346--1626489 Score: 83
Period size: 28 Copynumber: 5.2 Consensus size: 29
1626336 GATGCTTTTT
1626346 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
1626375 TTTTTC--AGTCCC-CA-AAG-AGCAGGACA
1 CTTTTCAAAG-CCCACACAAGTTGGTGG-CA
1626401 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * **
1626430 -TTTTCCAA-TCCTCA-AAG-AGCAGGACA
1 CTTTTCAAAGCCCACACAAGTTGGTGG-CA
* *
1626456 CCTTTCAAAGCCCACACAAGTTGGTAGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1626485 -TTTTC
1 CTTTTC
1626490 CAATCCTCAA
Statistics
Matches: 80, Mismatches: 23, Indels: 25
0.62 0.18 0.20
Matches are distributed among these distances:
25 6 0.08
26 15 0.19
27 17 0.21
28 22 0.28
29 15 0.19
30 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (29 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1630271 original size:102 final size:102
Alignment explanation
Indices: 1630011--1630292 Score: 365
Period size: 102 Copynumber: 2.8 Consensus size: 102
1630001 CAAGTTTTCT
* * * * *
1630011 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCACAAT
1 CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCTATAAT
* * *
1630076 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACAC
66 CGGGGATACTCCAACTCCGATTGTATTCTCAAAACAC
**
1630113 CAATTTTCCA-CAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCTATA
1 CAATTTTCCATC-ATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACATTAATTTTCTATA
*
1630176 ATCGGGGATACTCCAACTCCGATTGTATT-TCCAAAATAC
64 ATCGGGGATACTCCAACTCCGATTGTATTCT-CAAAACAC
* * * *
1630215 TAATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATTAA-TTTCTCATAA
1 CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCT-ATAA
1630279 TCGGGGATACTCCA
65 TCGGGGATACTCCA
1630293 TCCCCGTTAT
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
101 7 0.04
102 148 0.94
103 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (102 bp):
CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCTATAAT
CGGGGATACTCCAACTCCGATTGTATTCTCAAAACAC
Found at i:1630289 original size:153 final size:153
Alignment explanation
Indices: 1630011--1630298 Score: 359
Period size: 153 Copynumber: 1.9 Consensus size: 153
1630001 CAAGTTTTCT
* * * *
1630011 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCACAAT
1 CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCACAAT
* *
1630076 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACACCAATTTTCCACAATCGGGGATACTCCAA
66 CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
1630141 CCCCGGTTTTATTTTCAAAACAC
131 CCCCGGTTTTATTTTCAAAACAC
* * * *
1630164 CAATTTT-CTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACTAATTTTTCATC-
1 CAATTTTGC-ATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCA-CA
* * * ** *
1630227 ATCGGGGATACTCCAACCCCGTTTTTATT-TCTAAAATATTAA-TTTCTCATAATCGGGGATACT
64 ATCGGGGACACTCCAACCCCGATTTTATTCTC-AAAACACCAATTTTC-CACAATCGGGGATACT
*
1630290 CCATCCCCG
127 CCAACCCCG
1630299 TTATTTTCGA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
152 7 0.06
153 106 0.93
154 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (153 bp):
CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCACAAT
CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
CCCCGGTTTTATTTTCAAAACAC
Found at i:1630300 original size:51 final size:50
Alignment explanation
Indices: 1630012--1630298 Score: 308
Period size: 51 Copynumber: 5.6 Consensus size: 50
1630002 AAGTTTTCTC
* * *
1630012 AATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATT
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * * *
1630063 AATTTTCCACAATCGGGGACACTCCAACTCCGATTTTA-TTCTCAGAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * *
1630114 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * * *
1630165 AATTTTCTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACT
1 AATTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * *
1630216 AATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATT
1 AA-TTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
*
1630267 AATTTCTCATAATCGGGGATACTCCATCCCCG
1 AATTT-TCATAATCGGGGATACTCCAACCCCG
1630299 TTATTTTCGA
Statistics
Matches: 203, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
50 8 0.04
51 188 0.93
52 7 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
AATTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
Found at i:1630379 original size:76 final size:78
Alignment explanation
Indices: 1630230--1630379 Score: 214
Period size: 79 Copynumber: 1.9 Consensus size: 78
1630220 TTTCATCATC
* * * * *
1630230 GGGGATACTCCAACCCCGTTTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCT-ATAATCGGGGATACTCCAAC
1630295 CCCGTTATTTTCGA
65 CCCGTTATTTTCGA
* *
1630309 GGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAA-TTCT-TCATCGGGGATACTCCAACC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTATAATCGGGGATACTCCAACC
1630372 CCGTTATT
66 CCGTTATT
1630380 CTCATAATCA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
76 26 0.41
78 4 0.06
79 34 0.53
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTATAATCGGGGATACTCCAACC
CCGTTATTTTCGA
Found at i:1641427 original size:1 final size:1
Alignment explanation
Indices: 1641421--1641482 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
1641411 CTTCTCTTCC
* * * * * * **
1641421 AAAAAAAAAAAGAAAAAACAAAAAACAAACAAAAAAAAGAAGAAGGAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1641483 GGAACTTGCT
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.87, C:0.05, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:1642723 original size:55 final size:55
Alignment explanation
Indices: 1642440--1643997 Score: 1732
Period size: 55 Copynumber: 27.4 Consensus size: 55
1642430 TCCCCTTCCG
* *
1642440 CTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCA
* *
1642500 C-CTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCA
* * *
1642559 C-CTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCA
* * *
1642618 C-ATTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1642678 CCTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1642733 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCAC-CTAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACAC-AAGTTGGTGGCA
* * *
1642788 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1642848 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
*
1642903 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1642958 CCTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643013 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643068 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643128 TTTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643183 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643238 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643298 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
*
1643353 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1643408 CCTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTAGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643463 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1643518 C-CTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAATCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643578 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
*
1643633 -TTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1643688 TTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1643743 -TTTTCTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1643798 -TTTTCTAGTCCTCAAAGAGCAGGATGCTTTCTTTTTCCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGGA--C--AC-CTTT-CAAAGCCCACACAAGTTGGTGGCA
*
1643859 C-CTTCTAGTCCTCAAAGAGCAGGACACCTCACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTC-AGTCCTCAAAGAGCAGG--A---CACCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1643919 CCTTTT-AGTCCTCAGAGAGCAAGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 -CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1643974 CTTTTTAGTCCTCAATGAGCAGGA
1 CTTTTCAGTCCTCAAAGAGCAGGA
1643998 TACACTTTAT
Statistics
Matches: 1321, Mismatches: 112, Indels: 135
0.84 0.07 0.09
Matches are distributed among these distances:
54 108 0.08
55 726 0.55
56 14 0.01
57 1 0.00
58 1 0.00
59 142 0.11
60 168 0.13
61 151 0.11
62 3 0.00
63 1 0.00
64 5 0.00
65 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (55 bp):
CTTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1642907 original size:28 final size:29
Alignment explanation
Indices: 1642819--1643017 Score: 97
Period size: 28 Copynumber: 7.2 Consensus size: 29
1642809 GATGCTTTTT
1642819 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
1642848 TTTTTC--AGTCCC-CA-AAG-AGCAGGACA
1 CTTTTCAAAG-CCCACACAAGTTGGTGG-CA
1642874 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * **
1642903 -TTTTCCAA-TCCTCA-AAG-AGCAGGACA
1 CTTTTCAAAGCCCACACAAGTTGGTGG-CA
*
1642929 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
1642958 CCTTTC--AGTCCC-CA-AAG-AGCAGG-A
1 CTTTTCAAAG-CCCACACAAGTTGGTGGCA
1642982 CTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CT--TTTCAAAGCCCACACAAGTTGGTGGCA
1643013 -TTTTC
1 CTTTTC
1643018 CAATCCTCAA
Statistics
Matches: 121, Mismatches: 28, Indels: 43
0.63 0.15 0.22
Matches are distributed among these distances:
24 2 0.02
25 9 0.07
26 22 0.18
27 24 0.20
28 29 0.24
29 24 0.20
30 10 0.08
31 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (29 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1642988 original size:280 final size:278
Alignment explanation
Indices: 1642446--1643997 Score: 1983
Period size: 280 Copynumber: 5.5 Consensus size: 278
1642436 TCCGCTTTTT
*
1642446 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCT
1 AGTCCTCAAAGAGCAGGACACCTTTTC----AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCT
** *
1642511 CAAAGAGCAGGACGC-CTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAA
62 CAAAGAGCAGGA-GCTCTTTTC----AAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAA
* * ** *
1642574 GAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACATT-CAGTCCTCAAAGAGCA
122 GAGCAGGAC-ACTTTTC----AAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCA
* * *
1642638 GGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGA-
182 GGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAG
*
1642702 C-TCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
241 CTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1642739 AATCCTCAAAGAGCAGGACACCTTTT-AAAGCCCAC-CTAAGTTGGTGGCACCTTCAGTCCTCAA
1 AGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACAC-AAGTTGGTGGCACCTTCAGTCCTCAA
1642802 AGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAG
65 AGAGCAGGA-GC----TCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAG
1642867 CAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCT
125 CAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCT
* *
1642932 TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGA-C-TCCTTTCAAAGC
190 TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAGCTTCTTTTCAAAGC
1642995 CCACACAAGTTGGTGGCATTTTCC
255 CCACACAAGTTGGTGGCATTTTCC
* *
1643019 AATCCTCAAAGAGCAGGACACCTTTT-AAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAA
1643083 GAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGC
66 GAGCAGGA-GC----TCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGC
* *
1643148 AGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTT
126 AGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTT
* *
1643213 TTAAAGCCCACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAA
191 TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-GC---TTCTTTTCAA
*
1643277 AGCCCACACAAGTTGGTGGCATTTTTC
252 AGCCCACACAAGTTGGTGGCATTTTCC
* ** *
1643304 AGTCCCCAAAGAGCAGGACA-CTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAA
1 AGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAA
* * **
1643368 AGAGCAGGA-CACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGA
65 AGAGCAGGAGCTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGA
* * * *
1643432 CTCCTTTCAAAGCCCACACAAGTTGGTAGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAA
130 CACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTCAA
* *
1643497 AGCCCACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAATCC
195 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-GC---TTCTTTTCAAAGCC
*
1643561 CACACAAGTTGGTGGCATTTTTC
256 CACACAAGTTGGTGGCATTTTCC
* ** *
1643584 AGTCCCCAAAGAGCAGGACA-CTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAA
1 AGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAA
* *
1643648 AGAGCAGGA-CACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGA
65 AGAGCAGGAGCTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGA
* *
1643712 CACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACACCTTTCAA
130 CACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTCAA
*
1643777 AGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCTCAAAGAGCAGGATGCTTTCTTTTTCCAAAGC
195 AGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGA-GC-TTC-TTTT-CAAAGC
** *
1643841 CCACACAAGTTGGTGGCACCTTCT
255 CCACACAAGTTGGTGGCATTTTCC
*
1643865 AGTCCTCAAAGAGCAGGACACCTCACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
1 AGTCCTCAAAGAGCAGGACACCT----TTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCC
* * * * *
1643930 TCAGAGAGCAAGACGC-C-TTTCAAAGCCCACACGAGTTGGTGGCACTTTTT-AGTCCTCAATGA
61 TCAAAGAGCAGGA-GCTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTCAGTCCCCAAAGA
1643992 GCAGGA
124 GCAGGA
1643998 TACACTTTAT
Statistics
Matches: 1172, Mismatches: 57, Indels: 67
0.90 0.04 0.05
Matches are distributed among these distances:
279 24 0.02
280 716 0.61
281 67 0.06
282 2 0.00
284 7 0.01
285 100 0.09
286 120 0.10
287 9 0.01
288 47 0.04
289 29 0.02
290 21 0.02
293 30 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (278 bp):
AGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAA
GAGCAGGAGCTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGAC
ACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAA
GCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAGCTTCTTTTCAAAGCCCACAC
AAGTTGGTGGCATTTTCC
Found at i:1643410 original size:29 final size:29
Alignment explanation
Indices: 1643269--1643414 Score: 94
Period size: 29 Copynumber: 5.2 Consensus size: 29
1643259 GATGCTTTTT
1643269 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
1643298 TTTTTC--AGTCCC-CA-AAG-AGCAGGACA
1 CTTTTCAAAG-CCCACACAAGTTGGTGG-CA
1643324 CTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * **
1643353 -TTTTCCAA-TCCTCA-AAG-AGCAGGACA
1 CTTTTCAAAGCCCACACAAGTTGGTGG-CA
*
1643379 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCA
*
1643408 CCTTTCA
1 CTTTTCA
1643415 GTCCCCAAAG
Statistics
Matches: 84, Mismatches: 21, Indels: 24
0.65 0.16 0.19
Matches are distributed among these distances:
25 6 0.07
26 15 0.18
27 17 0.20
28 18 0.21
29 22 0.26
30 6 0.07
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (29 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1643431 original size:450 final size:448
Alignment explanation
Indices: 1642448--1643998 Score: 2380
Period size: 450 Copynumber: 3.4 Consensus size: 448
1642438 CGCTTTTTAG
* *
1642448 TCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCA
1 TCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCCCA
* ** *
1642513 AAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGC
61 AAGAGCAGGACTCC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCAATCCTCAAAGAGC
* *
1642578 AGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACATTCAGTCCTCAAAGAGCAGGATG
121 AGGAC-AC----CTTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATG
**
1642643 CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACTCCTT
181 CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACTCCTT
1642708 TCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCA
246 TCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCA
*
1642773 CCTAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAA
311 CCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAA
1642838 GTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
376 GTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCA
1642903 TTTTCCAA
441 TTTTCCAA
1642911 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCCCAAAGA
1642976 GCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACC
65 GCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAATCCTCAAAGAGCAGGACACC
1643041 TTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCA
129 TTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCA
1643106 AAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACAC
194 AAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACAC
1643171 AAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGG
259 AAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGG
1643236 CACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTT
324 CACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTT
1643301 TTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
389 TTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
1643361 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCCCAAAGA
*
1643426 GCAGGACTCCTTTCAAAGCCCACACAAGTTGGTAGCATTTTCCAATCCTCAAAGAGCAGGACACC
65 GCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAATCCTCAAAGAGCAGGACACC
1643491 TTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCA
129 TTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCA
* * *
1643556 AATCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACAC
194 AAGCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACAC
* *
1643621 AAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGG
259 AAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGG
** * *
1643686 CATTTTTCAGTCCCCAAAGAGCAGGA--C----ACTTTTCAAAGCCCACACAAGTTGGTGGCA-T
324 CA-CCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATT
* * * *
1643744 TTTCTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAG
388 TTTC-AGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
* * *
1643806 TCCTCAAAGAGCAGGATGCTTTCTTTTTCCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCT
1 TCCTCAAAGAGCAGGA--C--AC-CTTT-CAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCC
* *
1643871 CAAAGAGCAGGACACCTCACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAGA
59 CAAAGAGCAGG--A-CT--CCTTTCAAAGCCCACACAAGTTGGTGGCA--TTTTCAATCCTCAAA
* * * * * * * *
1643935 GAGCAAGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAATGAGCAGGAT
117 GAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGAT
1643999 ACACTTTATT
Statistics
Matches: 1030, Mismatches: 39, Indels: 44
0.93 0.04 0.04
Matches are distributed among these distances:
444 5 0.00
445 98 0.10
447 1 0.00
449 2 0.00
450 644 0.63
451 62 0.06
453 1 0.00
454 28 0.03
455 19 0.02
456 71 0.07
457 20 0.02
458 33 0.03
459 23 0.02
462 4 0.00
463 19 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (448 bp):
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCCCAAAGAG
CAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAATCCTCAAAGAGCAGGACACCTT
TTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAA
GCCCACACAAGTTGGTGGCATTTTTCAGTCCCCAAAGAGCAGGACTCCTTTCAAAGCCCACACAA
GTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACCTTTTAAAGCCCACCCAAGTTGGTGGCA
CCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTT
CAGTCCCCAAAGAGCAGGACACTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAA
Found at i:1647248 original size:102 final size:102
Alignment explanation
Indices: 1646988--1647269 Score: 365
Period size: 102 Copynumber: 2.8 Consensus size: 102
1646978 CAAGTTTTCT
* * * * *
1646988 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCACAAT
1 CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCTATAAT
* * *
1647053 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACAC
66 CGGGGATACTCCAACTCCGATTGTATTCTCAAAACAC
**
1647090 CAATTTTCCA-CAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCTATA
1 CAATTTTCCATC-ATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACATTAATTTTCTATA
*
1647153 ATCGGGGATACTCCAACTCCGATTGTATT-TCCAAAATAC
64 ATCGGGGATACTCCAACTCCGATTGTATTCT-CAAAACAC
* * * *
1647192 TAATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATTAA-TTTCTCATAA
1 CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCT-ATAA
1647256 TCGGGGATACTCCA
65 TCGGGGATACTCCA
1647270 TCCCCGTTAT
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
101 7 0.04
102 148 0.94
103 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (102 bp):
CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCTATAAT
CGGGGATACTCCAACTCCGATTGTATTCTCAAAACAC
Found at i:1647266 original size:153 final size:153
Alignment explanation
Indices: 1646988--1647275 Score: 359
Period size: 153 Copynumber: 1.9 Consensus size: 153
1646978 CAAGTTTTCT
* * * *
1646988 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCACAAT
1 CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCACAAT
* *
1647053 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACACCAATTTTCCACAATCGGGGATACTCCAA
66 CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
1647118 CCCCGGTTTTATTTTCAAAACAC
131 CCCCGGTTTTATTTTCAAAACAC
* * * *
1647141 CAATTTT-CTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACTAATTTTTCATC-
1 CAATTTTGC-ATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCA-CA
* * * ** *
1647204 ATCGGGGATACTCCAACCCCGTTTTTATT-TCTAAAATATTAA-TTTCTCATAATCGGGGATACT
64 ATCGGGGACACTCCAACCCCGATTTTATTCTC-AAAACACCAATTTTC-CACAATCGGGGATACT
*
1647267 CCATCCCCG
127 CCAACCCCG
1647276 TTATTTTCGA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
152 7 0.06
153 106 0.93
154 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (153 bp):
CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCACAAT
CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
CCCCGGTTTTATTTTCAAAACAC
Found at i:1647277 original size:51 final size:50
Alignment explanation
Indices: 1646989--1647275 Score: 308
Period size: 51 Copynumber: 5.6 Consensus size: 50
1646979 AAGTTTTCTC
* * *
1646989 AATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATT
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * * *
1647040 AATTTTCCACAATCGGGGACACTCCAACTCCGATTTTA-TTCTCAGAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * *
1647091 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * * *
1647142 AATTTTCTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACT
1 AATTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * *
1647193 AATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATT
1 AA-TTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
*
1647244 AATTTCTCATAATCGGGGATACTCCATCCCCG
1 AATTT-TCATAATCGGGGATACTCCAACCCCG
1647276 TTATTTTCGA
Statistics
Matches: 203, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
50 8 0.04
51 188 0.93
52 7 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
AATTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
Found at i:1648490 original size:20 final size:20
Alignment explanation
Indices: 1648465--1648535 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
1648455 GCCAATGTCC
*
1648465 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAGTG
** *
1648485 TGTATCGATAC-TATGCGATC
1 TGTATCGATACATATTAG-TG
*
1648505 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AGTG
1648525 TGTATCGATAC
1 TGTATCGATAC
1648536 TTTTCAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 4 0.10
20 36 0.88
21 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAGTG
Found at i:1650758 original size:79 final size:79
Alignment explanation
Indices: 1650614--1650776 Score: 229
Period size: 79 Copynumber: 2.1 Consensus size: 79
1650604 GGGCTAGAGG
* * * **
1650614 ATCCCTGATTATGGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTGGAGTATCCCCGTGGAAAT
1 ATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCGTAAAAAT
1650679 AACAGGGTTGGAGT
66 AACAGGGTTGGAGT
*
1650693 ATCCCTAATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCC-TAAAAAA
1 ATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCGT-AAAAA
**
1650757 TAATGGGGTTGGAGT
65 TAACAGGGTTGGAGT
*
1650772 TTCCC
1 ATCCC
1650777 CGCGAAAATA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 1 0.01
79 73 0.99
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (79 bp):
ATCCCTAATTATAGAAAATTGGTGTTCTGAAAATAAAATCGGGGTTAGAGTATCCCCGTAAAAAT
AACAGGGTTGGAGT
Found at i:1650771 original size:28 final size:28
Alignment explanation
Indices: 1650732--1650807 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
1650722 AAAATAAAAT
* *
1650732 CGGGGTTAGAGTATCCCCTAAAAAATAA
1 CGGGGTTGGAGTATCCCCGAAAAAATAA
* * **
1650760 TGGGGTTGGAGTTTCCCCGCGAAAATAA
1 CGGGGTTGGAGTATCCCCGAAAAAATAA
*
1650788 CGAGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
1650808 TTGTGAGAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAAAAAATAA
Found at i:1650879 original size:28 final size:28
Alignment explanation
Indices: 1650839--1650899 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
1650829 GACATAAAGC
1650839 CGGGGTTGGAGTATCCCTTCAGAAATAA
1 CGGGGTTGGAGTATCCCTTCAGAAATAA
* *
1650867 CGGGGTTGGAGTATTCCTTCGGAAATAA
1 CGGGGTTGGAGTATCCCTTCAGAAATAA
1650895 CGGGG
1 CGGGG
1650900 GAAATCAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCTTCAGAAATAA
Found at i:1650966 original size:165 final size:156
Alignment explanation
Indices: 1650762--1651128 Score: 479
Period size: 165 Copynumber: 2.3 Consensus size: 156
1650752 AAAAATAATG
* * *
1650762 GGGTTGGAGTTTCCCCGCGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTT
1 GGGTTGGAGTATCCCCTCGGAAATAACG-GGTTGGAGTATCCCCGATTGTGAGAAATCAATATTT
* * *
1650827 TAGACATAAAGCCGGGGTTGGAGTAT-CCCTTCAGAAATAACGGGGTTGGAGTATTCCTTCGGAA
65 TAGAAATAAAACCGGGGTTGGAATATCCCCTT-AGAAATAACGGGGTTGGAGTATTCC--C-G--
*
1650891 ATAACGGGGGAAATCAATATTTTATG-AATAAAGCC
124 AT--CGGGAGAAATCAATATTTTA-GAAATAAAGCC
1650926 AGGGTTGGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
1 -GGGTTGGAGTATCCCCTCGGAAATAAC-GGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
* * *
1650991 TTAGAAATAAAACTGGGGTTGGAATATCCCCTTAGAAATAACGGGGTTGGAGTATTCCCGATTGT
64 TTAGAAATAAAACCGGGGTTGGAATATCCCCTTAGAAATAACGGGGTTGGAGTATTCCCGATCGG
1651056 GAGAAATCAATATTTTAGAAATAAAGCC
129 GAGAAATCAATATTTTAGAAATAAAGCC
*
1651084 GAGGTTGGAGCATCCCCTC-GAGAATAACGGGGTTGGAGTATCCCC
1 G-GGTTGGAGTATCCCCTCGGA-AATAAC-GGGTTGGAGTATCCCC
1651129 AATGAAAAAT
Statistics
Matches: 185, Mismatches: 12, Indels: 17
0.86 0.06 0.08
Matches are distributed among these distances:
157 4 0.02
158 64 0.35
160 2 0.01
162 1 0.01
163 1 0.01
165 107 0.58
166 6 0.03
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (156 bp):
GGGTTGGAGTATCCCCTCGGAAATAACGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTT
AGAAATAAAACCGGGGTTGGAATATCCCCTTAGAAATAACGGGGTTGGAGTATTCCCGATCGGGA
GAAATCAATATTTTAGAAATAAAGCC
Found at i:1651031 original size:79 final size:79
Alignment explanation
Indices: 1650900--1651128 Score: 327
Period size: 79 Copynumber: 2.9 Consensus size: 79
1650890 AATAACGGGG
* ** *
1650900 GAAATCAATATTTTATG-AATAAAGCCAGGGTTGGAGTATCCCCTCGGAAATAACAGGGTTGGAG
1 GAAATCAATATTTTA-GAAATAAAGCCGGGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGGAG
1650964 TATCCCCGATTGTGA
65 TATCCCCGATTGTGA
* * *
1650979 GAAATCAATATTTTAGAAATAAAACTGGGGTTGGAATATCCCCTTAGAAATAACGGGGTTGGAGT
1 GAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGT
*
1651044 ATTCCCGATTGTGA
66 ATCCCCGATTGTGA
* * *
1651058 GAAATCAATATTTTAGAAATAAAGCCGAGGTTGGAGCATCCCC-TCGAGAATAACGGGGTTGGAG
1 GAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTTAGA-AATAACGGGGTTGGAG
1651122 TATCCCC
65 TATCCCC
1651129 AATGAAAAAT
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
78 4 0.03
79 129 0.97
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (79 bp):
GAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGT
ATCCCCGATTGTGA
Found at i:1651199 original size:127 final size:129
Alignment explanation
Indices: 1651035--1651306 Score: 316
Period size: 127 Copynumber: 2.1 Consensus size: 129
1651025 GAAATAACGG
* *** * *
1651035 GGTTGGAGTATTCCCGATTGT-GAGAAATCAATATTTTAGAAATAAAGCCGAGGTTGGAGCATCC
1 GGTTGGAGTATCCCCGATTGTGGAG-AATTGGTGTTTTAGAAATAAAACCGAGGTTGGAGCATCC
* * * * * **
1651099 CCTCGAGAATAACGGGGTTGGAGTATCCCC-A-ATGAAAAATTGATGTTTTGGAAATAAAACCGA
65 CCTCAAAAATAACAGGGTTGGAGTATCCCCGATATGAAAAATTAATATTTTAAAAATAAAACCGA
* * * * *
1651162 GGTTTGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACTGGGGTTGGAGTATCTC
1 GGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCGAGGTTGGAGCATCCC
* * *
1651227 CTCAAAAATAACAGGGTTGTAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAGCCGA
66 CTCAAAAATAACAGGGTTGGAGTATCCCCGA-TATGAAAAATTAATATTTTAAAAATAAAACCGA
1651292 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
1651307 TCGAGAATAA
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
127 75 0.63
128 4 0.03
130 40 0.34
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (129 bp):
GGTTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCGAGGTTGGAGCATCCC
CTCAAAAATAACAGGGTTGGAGTATCCCCGATATGAAAAATTAATATTTTAAAAATAAAACCGA
Found at i:1651209 original size:206 final size:206
Alignment explanation
Indices: 1650956--1651381 Score: 665
Period size: 206 Copynumber: 2.1 Consensus size: 206
1650946 GAAATAACAG
1650956 GGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACTGGGGTTGGAATATCCC
1 GGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACTGGGGTTGGAATATCCC
* * * * * *
1651021 CTTAGAAATAACGGGGTTGGAGTATTCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCGA
66 CTCAAAAATAACAGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAAAAATAAAGCCGA
1651086 GGTTGGAGCATCCCCTCGAGAATAACGGGGTTGGAGTATCCCCAATGAAAAATTGATGTTTTGGA
131 GGTTGGAGCATCCCCTCGAGAATAACGGGGTTGGAGTATCCCCAATGAAAAATTGATGTTTTGGA
1651151 AATAAAACCGA
196 AATAAAACCGA
* *** * * *
1651162 GGTTTGAGTATCCCCGATTGTG-GAGAATTGGTGTTTTAGAAATAAAACTGGGGTTGGAGTATCT
1 GGTTGGAGTATCCCCGATTGTGAGA-AATCAATATTTTAGAAATAAAACTGGGGTTGGAATATCC
* *
1651226 CCTCAAAAATAACAGGGTTGTAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAGCCG
65 CCTCAAAAATAACAGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAAAAATAAAGCCG
* * *
1651291 AGGTTGGAGTATCCCCTCGAGAATAACGGGGTTGGAGTATCCCCGATGGAAAATTGATGTTTTGG
130 AGGTTGGAGCATCCCCTCGAGAATAACGGGGTTGGAGTATCCCCAATGAAAAATTGATGTTTTGG
*
1651356 AAATAAAACCGG
195 AAATAAAACCGA
1651368 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
1651382 TGAGATGAAA
Statistics
Matches: 199, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
205 2 0.01
206 197 0.99
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (206 bp):
GGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAACTGGGGTTGGAATATCCC
CTCAAAAATAACAGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAAAAATAAAGCCGA
GGTTGGAGCATCCCCTCGAGAATAACGGGGTTGGAGTATCCCCAATGAAAAATTGATGTTTTGGA
AATAAAACCGA
Found at i:1651299 original size:79 final size:78
Alignment explanation
Indices: 1651162--1651381 Score: 257
Period size: 79 Copynumber: 2.8 Consensus size: 78
1651152 ATAAAACCGA
* * * *
1651162 GGTTTGAGTATCCCCGATTGTG-GAGAATTGGTGTTTTAGAAATAAAACTGGGGTTGGAGTATCT
1 GGTTGGAGTATCCCCGATT-TGAGA-AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1651226 CCTCAAAAATAACAG
64 CCTCAAAAATAACAG
* * * * * *
1651241 GGTTGTAGTATCCCCGATTATGAGAAATTAATATTTTAAAAATAAAGCCGAGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATT-TGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
* * *
1651306 CTCGAGAATAACGG
65 CTCAAAAATAACAG
* *
1651320 GGTTGGAGTATCCCCGA-TGGA-AAATTGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTTGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
1651382 TGAGATGAAA
Statistics
Matches: 118, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
76 35 0.30
77 2 0.02
78 1 0.01
79 78 0.66
80 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (78 bp):
GGTTGGAGTATCCCCGATTTGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
TCAAAAATAACAG
Found at i:1653703 original size:20 final size:19
Alignment explanation
Indices: 1653678--1653772 Score: 129
Period size: 20 Copynumber: 4.8 Consensus size: 19
1653668 AAAATGCCTG
1653678 AATGTATCGATACATTAT-AA
1 AATGTATCGATACA--ATGAA
*
1653698 AATGTATCGATACAATGAGT
1 AATGTATCGATACAATGA-A
1653718 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
1653738 AATGTATCGATACAATGAA
1 AATGTATCGATACAATGAA
1653757 CAATGTATCGATACAA
1 -AATGTATCGATACAA
1653773 ATTGTGAAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
18 2 0.03
19 3 0.04
20 63 0.91
21 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:1653740 original size:40 final size:40
Alignment explanation
Indices: 1653678--1653772 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 40
1653668 AAAATGCCTG
* * **
1653678 AATGTATCGATACATTATAAAATGTATCGATACAATGAGT
1 AATGTATCGATACAATACAAAATGTATCGATACAATGAAC
*
1653718 AATGTATCGATACAATGCAAAATGTATCGATACAATGAAC
1 AATGTATCGATACAATACAAAATGTATCGATACAATGAAC
1653758 AATGTATCGATACAA
1 AATGTATCGATACAA
1653773 ATTGTGAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (40 bp):
AATGTATCGATACAATACAAAATGTATCGATACAATGAAC
Found at i:1654526 original size:61 final size:59
Alignment explanation
Indices: 1654423--1654781 Score: 382
Period size: 61 Copynumber: 6.1 Consensus size: 59
1654413 GACAAAGGAG
* ** * * *
1654423 AAAAGGAAAAGGCATCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGCGTGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT
*
1654484 AAAAAGAAAAGGCTTCCTGCTCTTTGAGGACTGGAAGTTGCCACCAACTTGTGTGGGCTTT
1 -AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGGAAG-TGCCACCAACTTGTGTGGGCTTT
*
1654545 AAAATGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTT
1654606 -----AAAAGGCATCCTGCTCTTTGAGGACTGGGGAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCATCCTGCTCTTTGAGGACT--GGAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1654661 GAAAGGAGAAA-GCATCCTGATCTTTGAGGACTGGAAAATGCCACCAATTTGTGTGGGCTTT
1 -AAAAGA-AAAGGCATCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1654722 ----G-AAAGGCGTCCTGCTCTTGGAGGACTGGAAAATGCCACCAACTTGTGTTGGCTTT
1 AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTT
1654777 AAAAG
1 AAAAG
1654782 GCGTCCTACT
Statistics
Matches: 262, Mismatches: 16, Indels: 41
0.82 0.05 0.13
Matches are distributed among these distances:
54 3 0.01
55 93 0.35
56 3 0.01
57 2 0.01
59 3 0.01
60 9 0.03
61 139 0.53
62 10 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (59 bp):
AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:1654642 original size:55 final size:55
Alignment explanation
Indices: 1654490--1654802 Score: 369
Period size: 55 Copynumber: 5.5 Consensus size: 55
1654480 CTTTAAAAAG
* *
1654490 AAAAGGCTTCCTGCTCTTTGAGGACT-GGAAGTTGCCACCAACTTGTGTGGGCTTTAAAAT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-ATGCCACCAACTTGTGTGGGC-TT----T
1654550 GAAAAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT
1 -AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAA-TGCCACCAACTTGTGTGGGCTTT
* *
1654606 AAAAGGCATCCTGCTCTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTT
* * * *
1654661 GAAAGGAGAAAGCATCCTGATCTTTGAGGACTGGAAAATGCCACCAATTTGTGTGGGCTTT
1 -AAA--AG---GCGTCCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTT
* * * *
1654722 GAAAGGCGTCCTGCTCTTGGAGGACTGGAAAATGCCACCAACTTGTGTTGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTT
*
1654777 AAAAGGCGTCCTACTCTTTGAGGACT
1 AAAAGGCGTCCTGCTCTTTGAGGACT
1654803 AAAGGGAAAA
Statistics
Matches: 227, Mismatches: 17, Indels: 22
0.85 0.06 0.08
Matches are distributed among these distances:
55 116 0.51
56 8 0.04
58 4 0.02
60 4 0.02
61 95 0.42
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTT
Found at i:1654659 original size:116 final size:116
Alignment explanation
Indices: 1654423--1654782 Score: 447
Period size: 116 Copynumber: 3.1 Consensus size: 116
1654413 GACAAAGGAG
* ** * * *
1654423 AAAAGGAAAAGGCATCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGCGTGCTTTAAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT----
*
1654488 AGAAAAGGCTTCCTGCTCTTTGAGGACT--GGAAGTTGCCACCAACTTGTGTGGGCTTT
62 --AAAAGGCATCCTGCTCTTTGAGGACTGGGGAA--TGCCACCAACTTGTGTGGGCTTT
* *
1654545 AAAATGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1654610 GGCATCCTGCTCTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTT
66 GGCATCCTGCTCTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTT
* * * * *
1654661 GAAAGGAGAAA-GCATCCTGATCTTTGAGGACTGGAAAATGCCACCAATTTGTGTGGGCTTTGAA
1 AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
* * ** *
1654725 AGGCGTCCTGCTCTTGGAGGACTGGAAAATGCCACCAACTTGTGTTGGCTTT
65 AGGCATCCTGCTCTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTT
1654777 AAAAGG
1 AAAAGG
1654783 CGTCCTACTC
Statistics
Matches: 213, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
116 153 0.72
117 3 0.01
118 4 0.02
122 53 0.25
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (116 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
GGCATCCTGCTCTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTT
Found at i:1654913 original size:61 final size:57
Alignment explanation
Indices: 1654824--1655102 Score: 250
Period size: 55 Copynumber: 4.9 Consensus size: 57
1654814 GGAGAGAGCG
* * *
1654824 TCTTGCTCTTTCAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGAAAGCA
1 TCTTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GGG---GCA
* *
1654885 TCTTACTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA--GGCG
1 TCTTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGGGCA
* * * *
1654940 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTT-AAA-AGGCA
1 TCTTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGGGCA
* * * * * * * * * *
1654995 TCCTACTCTTTGAGGACTGAAAAATTCCACAAACTTATGTCGGCTTT-AAA-AGGCG
1 TCTTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGGGCA
* * *
1655050 TCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGTTTTGAAAGG
1 TCTTGCTCTTTGAGGATTGGAAAA--TGCCACCAACTTGTGTGGGCTTTGAAAGG
1655103 CGTTCTGCTC
Statistics
Matches: 190, Mismatches: 23, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
53 4 0.02
54 3 0.02
55 132 0.69
56 3 0.02
58 1 0.01
61 47 0.25
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (57 bp):
TCTTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGGGCA
Found at i:1654961 original size:55 final size:55
Alignment explanation
Indices: 1654890--1655117 Score: 307
Period size: 55 Copynumber: 4.1 Consensus size: 55
1654880 AAGCATCTTA
* * *
1654890 CTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTG
* *
1654945 CTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTA
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTG
* * * *
1655000 CTCTTTGAGGACTGAAAAATTCCACAAACTTATGTCGGCTTTAAAAGGCGTCCTG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTG
* * * *
1655055 CTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTTCTG
1 CTCTTTGAGGACTGGAAAA--TGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTG
1655110 CTCTTTGA
1 CTCTTTGA
1655118 ATAGGCCGTT
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
53 4 0.03
55 149 0.97
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (55 bp):
CTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTG
Found at i:1654987 original size:210 final size:210
Alignment explanation
Indices: 1654617--1655012 Score: 670
Period size: 210 Copynumber: 1.9 Consensus size: 210
1654607 AAAGGCATCC
*
1654617 TGCTCTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCTGAT
1 TGCTCTTTCAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCTGAT
*
1654682 CTTTGAGGACTGGAAAATGCCACCAATTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTGGAGGAC
66 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTGGAGGAC
* * *
1654747 TGGAAAATGCCACCAACTTGTGTTGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGGAAA
131 TGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGGAAA
1654812 AAGGAGAGAGCGTCT
196 AAGGAGAGAGCGTCT
* * *
1654827 TGCTCTTTCAGGA-TTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGAAAGCAT-CTTA
1 TGCTCTTTCAGGACTGGGGAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCTGA
* *
1654890 CTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
65 -TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTGGAGG
1654955 ACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT
129 ACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT
1655013 GAAAAATTCC
Statistics
Matches: 174, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
209 9 0.05
210 165 0.95
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (210 bp):
TGCTCTTTCAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCTGAT
CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTGGAGGAC
TGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGGAAA
AAGGAGAGAGCGTCT
Found at i:1655042 original size:265 final size:262
Alignment explanation
Indices: 1654556--1655070 Score: 712
Period size: 265 Copynumber: 1.9 Consensus size: 262
1654546 AAATGAAAAG
* * *
1654556 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTCAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGCATCCTACT
**
1654621 CTTTGAGGACTGGGGAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCATCCTGATCTTT
66 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GAG--AGCATCCTGATCTTT
* * * * * *
1654686 GAGGACTGGAAAATGCCACCAATTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTGGAGGACTGGA
128 GAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTGGAGGACTGAA
* * *
1654751 AAATGCCACCAACTTGTGTTGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGGAAAAAGG
193 AAATGCCACAAACTTATGTCGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGGAAAAAGG
1654816 AGAGA
258 AGAGA
* * *
1654821 GCGTCTTGCTCTTTCAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGAAAGCAT
1 GCGTCCTGCTCTTTCAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT--AA----AAAGCAT
* * * *
1654886 CTTACTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AA-AG-GCGTCCTGCTC
60 CCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAGAGCATCCTGATC
*
1654948 TTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT
125 TTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTGGAGGACT
* *
1655013 GAAAAATTCCACAAACTTATGTCGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAA
190 GAAAAATGCCACAAACTTATGTCGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAA
1655071 AGGTGCCACC
Statistics
Matches: 220, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
265 166 0.75
267 2 0.01
268 2 0.01
270 2 0.01
271 48 0.22
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (262 bp):
GCGTCCTGCTCTTTCAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGCATCCTACT
CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAGAGCATCCTGATCTTTGAG
GACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACTCTTGGAGGACTGAAAAA
TGCCACAAACTTATGTCGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGGAAAAAGGAGA
GA
Found at i:1655048 original size:110 final size:110
Alignment explanation
Indices: 1654821--1655117 Score: 328
Period size: 110 Copynumber: 2.6 Consensus size: 110
1654811 AAAGGAGAGA
* * * * * *
1654821 GCGTCTTGCTCTTTCAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--AA----AAGGCAT
* * * * * * *
1654886 CTTACTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
60 CCTACTCTTTGAGGACTGAAAAATGCCACAAACTTATGTCGGCTTTAAAAG
*
1654937 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTACT
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACT
*
1655002 CTTTGAGGACTGAAAAATTCCACAAACTTATGTCGGCTTTAAAAG
66 CTTTGAGGACTGAAAAATGCCACAAACTTATGTCGGCTTTAAAAG
* * * * *
1655047 GCGTCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGTTTTGAAAGGCGTTCTG
1 GCGTCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTA
1655110 CTCTTTGA
64 CTCTTTGA
1655118 ATAGGCCGTT
Statistics
Matches: 158, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
108 4 0.03
110 108 0.68
114 2 0.01
116 44 0.28
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (110 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACT
CTTTGAGGACTGAAAAATGCCACAAACTTATGTCGGCTTTAAAAG
Found at i:1662271 original size:20 final size:20
Alignment explanation
Indices: 1662246--1662300 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
1662236 TTGCCAGTTT
**
1662246 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
1662266 CATGTATTGATAC-ATTGAA
1 CATGTATCGATACAATTGAA
1662285 CATGTATCGATACAAT
1 CATGTATCGATACAAT
1662301 GTATTGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1664862 original size:13 final size:13
Alignment explanation
Indices: 1664844--1664868 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1664834 ATAGTAACTC
1664844 ATGTATCGATACA
1 ATGTATCGATACA
1664857 ATGTATCGATAC
1 ATGTATCGATAC
1664869 GAAGAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1670018 original size:19 final size:18
Alignment explanation
Indices: 1669990--1670052 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
1669980 AAACAGTAAA
*
1669990 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGT-T
1670009 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
1670022 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
1670041 TGTATCGATACA
1 TGTATCGATACA
1670053 ATGTATCGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:1670027 original size:13 final size:13
Alignment explanation
Indices: 1670009--1670066 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
1669999 ACATAAGTGT
1670009 TGTATCGATACAA
1 TGTATCGATACAA
1670022 TGTATCGATACATAA
1 TGTATCGATAC--AA
1670037 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
*
1670054 TGTATCGCTACAA
1 TGTATCGATACAA
1670067 AGCTATTGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1670032 original size:32 final size:32
Alignment explanation
Indices: 1669988--1670065 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
1669978 ACAAACAGTA
*
1669988 AATGTATTGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
1670020 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
1670052 AATGTATCGCTACA
1 AATGTATCGATACA
1670066 AAGCTATTGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:1672174 original size:27 final size:27
Alignment explanation
Indices: 1672144--1672219 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
1672134 AATTTTCACA
1672144 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
1672171 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
1672198 TTGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
1672220 GCTTTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 26 0.59
28 18 0.41
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:1672254 original size:79 final size:79
Alignment explanation
Indices: 1672171--1672454 Score: 444
Period size: 79 Copynumber: 3.6 Consensus size: 79
1672161 CCCGTTAATC
*
1672171 ATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
* *
1672236 ATTAATTTTTCATA
66 ATTGATTTCTCATA
* * * * *
1672250 ATCGGGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGACTTTATTCTTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1672315 ATTGATTTCTCATA
66 ATTGATTTCTCATA
*
1672329 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
1672394 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* *
1672408 ATCAGGGG-TACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCC
1 ATC-GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
1672455 TGATCTTATG
Statistics
Matches: 188, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
79 184 0.98
80 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCATA
Found at i:1672290 original size:107 final size:107
Alignment explanation
Indices: 1672095--1672295 Score: 260
Period size: 106 Copynumber: 1.9 Consensus size: 107
1672085 TTCTATAATC
* *
1672095 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAATTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAAATTTTCACAATCGGGGATACTCCAA
**
1672160 CCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTTGA
66 CCCCGTTAATCAGAGGGGATACTCCAACCCCGTTATTTTTGA
* * * ** * * *
1672202 GGGGATACTCCAACCCCGGCTTTA-TTCCTAAAATATTAATTTTTCATAATCGGGGATACTCTAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAAATTTTCACAATCGGGGATACTCCAA
* *
1672266 CCCCGTTATTTCCGAGGGGATACTCCAACC
66 CCCCGTTA-ATCAGAGGGGATACTCCAACC
1672296 TCGACTTTAT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
106 41 0.52
107 38 0.48
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAAATTTTCACAATCGGGGATACTCCAA
CCCCGTTAATCAGAGGGGATACTCCAACCCCGTTATTTTTGA
Found at i:1672488 original size:158 final size:158
Alignment explanation
Indices: 1672171--1672535 Score: 461
Period size: 158 Copynumber: 2.3 Consensus size: 158
1672161 CCCGTTAATC
*
1672171 ATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
* * *
1672236 ATTAATTTTTCATAATCGGGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGAC
66 ATTAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGAC
* * ***
1672301 TTTATTCTTAAAATATTGATTTCTCATA
131 TTTATTCTCAAAACACCAATTTCTCATA
*
1672329 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
* * **
1672394 ATTGATTTCTCACAATCAGGGG-TACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACC-CTG
66 ATTAATTTCTCACAATC-GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTC-G
1672457 A-TCTTATGT-TCAAAACACCAATTT-TCTATA
129 ACT-TTAT-TCTCAAAACACCAATTTCTC-ATA
** * ** * *
1672487 ATTAGGAATACTCCAACCTTGTTATTTCCAAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
1672536 ATTTTATTTC
Statistics
Matches: 180, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
157 4 0.02
158 171 0.95
159 5 0.03
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (158 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGAC
TTTATTCTCAAAACACCAATTTCTCATA
Found at i:1672499 original size:79 final size:79
Alignment explanation
Indices: 1672175--1672587 Score: 383
Period size: 79 Copynumber: 5.2 Consensus size: 79
1672165 TTAATCATCG
* * *
1672175 GGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCG-GCTTTATTCCTAAAATATT
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATC-TTATTTC-AAAATATT
* *
1672239 AATTTT-TCATAATCG
64 GATTTTCTCATAATCA
* * * *
1672254 GGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGA-CTTTATTCTTAAAATATT
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATC-TTATT-TCAAAATATT
*
1672318 GA-TTTCTCATAATCG
64 GATTTTCTCATAATCA
* * *
1672333 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCG-GCTTTATTCCTAAAATATT
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATC-TTATTTC-AAAATATT
*
1672397 GA-TTTCTCACAATCA
64 GATTTTCTCATAATCA
* * * * * ***
1672412 GGGGTACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCTGATCTTATGTTCAAAACACCA
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATCTTAT-TTCAAAATATTG
*
1672477 ATTTTCT-ATAATTA
65 ATTTTCTCATAATCA
* ** * * * * * **
1672491 GGAATACTCCAACCTTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAGAACACCG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATCTTATTT-CAAAATATTG
1672556 ATTTTC-CATAATCA
65 ATTTTCTCATAATCA
* *
1672570 GGGGTACTCCAGCCCCGT
1 GGGATACTCCAACCCCGT
1672588 CGTCATCTCC
Statistics
Matches: 282, Mismatches: 42, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
78 5 0.02
79 269 0.95
80 8 0.03
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATCTTATTTCAAAATATTGA
TTTTCTCATAATCA
Found at i:1675066 original size:19 final size:20
Alignment explanation
Indices: 1675022--1675075 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
1675012 ACTGCAGTTT
**
1675022 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
1675042 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
1675061 CATGTATCGATACAA
1 CATGTATCGATACAA
1675076 AGCATAGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1681155 original size:13 final size:13
Alignment explanation
Indices: 1681137--1681163 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1681127 ATAGAGATCA
1681137 AATGTATCGATAC
1 AATGTATCGATAC
1681150 AATGTATCGATAC
1 AATGTATCGATAC
1681163 A
1 A
1681164 TTTGAGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1681240 original size:19 final size:19
Alignment explanation
Indices: 1681216--1681297 Score: 86
Period size: 19 Copynumber: 4.6 Consensus size: 19
1681206 AGCGACAAAT
*
1681216 TGTATCAATACAAAACTTA
1 TGTATCGATACAAAACTTA
* *
1681235 TGTATCGATACAACATTTA
1 TGTATCGATACAAAACTTA
1681254 TGTATCGATAC---A-TTA
1 TGTATCGATACAAAACTTA
*
1681269 --TATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
1681286 TGTATCGATACA
1 TGTATCGATACA
1681298 GTTACGGTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
13 9 0.17
15 3 0.06
16 2 0.04
17 3 0.06
19 37 0.69
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:1681278 original size:32 final size:32
Alignment explanation
Indices: 1681237--1681297 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
1681227 AAAACTTATG
*
1681237 TATCGATACAACATTTATGTATCGATACATTA
1 TATCGATACAACACTTATGTATCGATACATTA
1681269 TATCGATACAACACTTATGTATCGATACA
1 TATCGATACAACACTTATGTATCGATACA
1681298 GTTACGGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (32 bp):
TATCGATACAACACTTATGTATCGATACATTA
Found at i:1681791 original size:20 final size:20
Alignment explanation
Indices: 1681746--1681797 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1681736 GTAGCCAAAC
* **
1681746 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACAAAAAA
1681766 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
1681785 TTGTATCGATACA
1 TTGTATCGATACA
1681798 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:1687908 original size:20 final size:20
Alignment explanation
Indices: 1687883--1687936 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1687873 ATGACCAAAA
1687883 TGTATCGATACATGTTTT-TG
1 TGTATCGATACAT-TTTTCTG
*
1687903 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTG
1687923 TGTATCGATACATT
1 TGTATCGATACATT
1687937 GTATCGATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 4 0.12
20 28 0.88
ACGTcount: A:0.22, C:0.13, G:0.15, T:0.50
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTG
Found at i:1687940 original size:13 final size:13
Alignment explanation
Indices: 1687922--1687947 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1687912 ACATTTTTCT
1687922 TTGTATCGATACA
1 TTGTATCGATACA
1687935 TTGTATCGATACA
1 TTGTATCGATACA
1687948 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1688111 original size:20 final size:20
Alignment explanation
Indices: 1688068--1688113 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1688058 AAATCTTTTG
1688068 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1688089 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1688109 CAAAA
1 CAAAA
1688114 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1690512 original size:20 final size:20
Alignment explanation
Indices: 1690467--1690518 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1690457 GTAGCCAAAC
* **
1690467 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACAAAAAA
1690487 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
1690506 TTGTATCGATACA
1 TTGTATCGATACA
1690519 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:1695364 original size:167 final size:166
Alignment explanation
Indices: 1694795--1695438 Score: 633
Period size: 167 Copynumber: 3.9 Consensus size: 166
1694785 TCAGTTTTTT
* * *
1694795 GAAAAAAAAGAG-ATTTCAAAGAAAAAATCTAAAATTTATGAAAATAAATTG-ATATTTT-AAAA
1 GAAAAAAAAGAGAATTTC-AAGAAAAAATCAAAAACTCATGAAAATAAA-TGAAT-TTTTGAAAA
* * ** * * * *
1694857 ATGATTTAATATGAGTTAAATAATAATATTTTATGAA-TTTAAAAAATAAAAACCAAGAAAAATC
63 ATAAATTAATATGAAATAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATC
** * * * *
1694921 TTCGCGAAAAAAATTATGAAGTAGAAAACGA-CGT-TTT-
128 CCCTCGAAAAAATTTACGAAGTAGAAAAC-ATTGTATTTC
** * * * * * * *
1694958 TTAAAAAAA-AGAATTTCAAGGAAAAATTCAAAAACTCGTGGAAATGAATTAATTTTTGAACACT
1 GAAAAAAAAGAGAATTTCAA-GAAAAAATCAAAAACTCATGAAAATAAATGAATTTTTGAAAAAT
* * * * * *
1695022 AAATCAACATGAAATAAATAGTGATGTTTGATCAGTTTTAAAAATTAAAAACCAAGAAAAGTCCC
65 AAATTAATATGAAATAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCC
* * *
1695087 CTCTAAAAAA-TTACGAAGTAAAAAACATTATATTTC
130 CTCGAAAAAATTTACGAAGTAGAAAACATTGTATTTC
* * * * * * *
1695123 G-GAGAAAGGAGAATTTTGAGGAAAAAAATCAAAAGCTCATGAAAATGAATGAATTTTTGAAAAA
1 GAAAAAAAAGAGAA-TTTCAAG-AAAAAATCAAAAACTCATGAAAATAAATGAATTTTTGAAAAA
* * *
1695187 TAAATTAATATAAAATAAATAATGATCTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCC
64 TAAATTAATATGAAATAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCC
* * * *
1695252 CCCCCAAAAAATTTACGGAGTAGAAAATATTGTATTTC
129 CCTCGAAAAAATTTACGAAGTAGAAAACATTGTATTTC
* * *
1695290 GAAAAAAAAGGAGAATTTCAAGAAAAAATAAAAAACTCAAGACAATAAATGAATTTTTGAAAAAT
1 GAAAAAAAA-GAGAATTTCAAGAAAAAATCAAAAACTCATGAAAATAAATGAATTTTTGAAAAAT
* * ** *
1695355 GAATTAATATGAAATAAATAATGGTGTTTGATGAATTTTAAAAATTAAAAATTAAGAAAAATCCT
65 AAATTAATATGAAATAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCC
1695420 CTCGAAAAAATTTACGAAG
130 CTCGAAAAAATTTACGAAG
1695439 AAAAAACCTC
Statistics
Matches: 384, Mismatches: 83, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
162 10 0.03
163 77 0.20
164 40 0.10
165 5 0.01
166 104 0.27
167 134 0.35
168 9 0.02
169 5 0.01
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (166 bp):
GAAAAAAAAGAGAATTTCAAGAAAAAATCAAAAACTCATGAAAATAAATGAATTTTTGAAAAATA
AATTAATATGAAATAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCC
TCGAAAAAATTTACGAAGTAGAAAACATTGTATTTC
Found at i:1695986 original size:20 final size:20
Alignment explanation
Indices: 1695963--1696036 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
1695953 ACAATTCAAA
1695963 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1695983 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1696004 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1696024 GTATCGATACATG
1 GTATCGATACATG
1696037 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1696007 original size:21 final size:21
Alignment explanation
Indices: 1695981--1696052 Score: 101
Period size: 21 Copynumber: 3.5 Consensus size: 21
1695971 ACATGTTGCA
1695981 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1696002 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
1696022 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
1696043 ATGTATCGAT
1 ATGTATCGAT
1696053 GCATTTCTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 16 0.38
21 26 0.62
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1696014 original size:41 final size:41
Alignment explanation
Indices: 1695963--1696052 Score: 180
Period size: 41 Copynumber: 2.2 Consensus size: 41
1695953 ACAATTCAAA
1695963 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1696004 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1696045 GTATCGAT
1 GTATCGAT
1696053 GCATTTCTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:1696113 original size:13 final size:13
Alignment explanation
Indices: 1696095--1696120 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1696085 TACAGCAAGT
1696095 ATGTATCGATACA
1 ATGTATCGATACA
1696108 ATGTATCGATACA
1 ATGTATCGATACA
1696121 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.