Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5794061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 68655 characters in sequence are not A, C, G, or T
File 16 of 38
Found at i:2484124 original size:84 final size:84
Alignment explanation
Indices: 2483997--2484341 Score: 265
Period size: 84 Copynumber: 4.1 Consensus size: 84
2483987 CTTTTAATTG
* * * * *
2483997 GTTGACTTGTC-AGTTTAATCTCGGTCAACCTTTTCATCCTTTGTTTAACTATC-ATTTAGTCTC
1 GTTGACTTGTCGA-TTCAATCCCGATCAACCTTTT-ATCCTTTGTTTAACTGTCAACTTAGTCTC
2484060 AAGTAAATCCTTTTATCCTTT
64 AAGTAAATCCTTTTATCCTTT
* * * *
2484081 GTTGACTTGTCGATTCAATCCCGATTAACTCTTTTATCTTTTGTTTACCTGCCAACTTAGTC-CT
1 GTTGACTTGTCGATTCAATCCCGATCAAC-CTTTTATCCTTTGTTTAACTGTCAACTTAGTCTC-
** *
2484145 TTGTAAATCTTTTTATCCTTT
64 AAGTAAATCCTTTTATCCTTT
* * * * * **
2484166 GTTGATTTGTTGGTTCAATCCCGATCAACCTTTTTTCCTTTGTCTT-TCTGTCGGCTTAGTCTCA
1 GTTGACTTGTCGATTCAATCCCGATCAACCTTTTATCCTTTGT-TTAACTGTCAACTTAGTCTCA
2484230 AGTAAATCCTTTTATCCTTT
65 AGTAAATCCTTTTATCCTTT
** * * * * * * *
2484250 AATGACTTAT-TAGTTTAATCCC-AGTCAACACATTCAT-CTTTATCT-ACTCGTCAACTTAGTC
1 GTTGACTTGTCGA-TTCAATCCCGA-TCAAC-CTTTTATCCTTTGTTTAACT-GTCAACTTAGTC
* * * *
2484311 ACAGGTAATTCCTTTTATCCATT
62 TCAAGTAAATCCTTTTATCCTTT
2484334 GTTGACTT
1 GTTGACTT
2484342 ATTGGTTCAA
Statistics
Matches: 205, Mismatches: 46, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
83 4 0.02
84 138 0.67
85 63 0.31
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.46
Consensus pattern (84 bp):
GTTGACTTGTCGATTCAATCCCGATCAACCTTTTATCCTTTGTTTAACTGTCAACTTAGTCTCAA
GTAAATCCTTTTATCCTTT
Found at i:2485805 original size:160 final size:163
Alignment explanation
Indices: 2485343--2485847 Score: 533
Period size: 169 Copynumber: 3.1 Consensus size: 163
2485333 TTCGAACACC
* * * *
2485343 AAAATTCTTTAAATATTATTAATTAATTCATATTAAATCATTTTTCAAAAATTCATTCATTTTCA
1 AAAATTCATCAAATATTATTATTTAA-T-ATATTAAATCAGTTTTCAAAAATTCATTCATTTTCA
* * * * *
2485408 TGAGTTTTTCATTTTATCCTTAAAATTTT-CTTTTTCTTGAAATACAAAGTTTTATATTCCATAA
64 TGAGTGTTTCATTTT-TCTTTGAAATTTTCCTATTT-TTGAAATACAAAGTTTTCTATTCCATAA
** * *
2485472 ACATTTTC-AGGGGTATTTTTCTTGATTTATAATTTTT
127 ATGTTTTCAAGGGG-ATTTTTCTTGGTTTTTAATTTTT
* * *
2485509 TAACTTCATCAAATATTATTATTTAACTTATATTAAATCAGTTTTCAAAAATTGATTCATTTTCA
1 AAAATTCATCAAATATTATTATTTAA--TATATTAAATCAGTTTTCAAAAATTCATTCATTTTCA
** * * **
2485574 TGAGTTTGTTTCATTTTT-TTCCCTGAAATTCCCCTATTTTCGAAATACAAAGTTTTCTACTCTG
64 TGAG--TGTTTCATTTTTCTT---TGAAATTTTCCTATTTTTGAAATACAAAGTTTTCTATTCCA
*
2485638 TAAATGTTTTCAAGGAGATTTTTCTTGGTTTTTAATTTTT
124 TAAATGTTTTCAAGGGGATTTTTCTTGGTTTTTAATTTTT
* *
2485678 AAAATTCATCAAATATTATTATTT-A-A-GTTAAATCAGTTTTCAAAAATTCATTTATTTTCATG
1 AAAATTCATCAAATATTATTATTTAATATATTAAATCAGTTTTCAAAAATTCATTCATTTTCATG
** * *
2485740 AGTGTTGAATTTTTCTTTGAAATTTTCCTATTTTTGAAAAATC-GAGTTTTCTATTCCATAAATG
66 AGTGTTTCATTTTTCTTTGAAATTTTCCTATTTTTGAAATA-CAAAGTTTTCTATTCCATAAATG
**
2485804 TTTTCAAGGGGATTTTTCTCAG--TTTAATATTTCT
130 TTTTCAAGGGGATTTTTCTTGGTTTTTAAT-TTT-T
2485838 AAAATTCATC
1 AAAATTCATC
2485848 TATATTGTTA
Statistics
Matches: 286, Mismatches: 41, Indels: 30
0.80 0.11 0.08
Matches are distributed among these distances:
158 6 0.02
159 3 0.01
160 67 0.23
161 1 0.00
162 10 0.03
163 2 0.01
164 35 0.12
165 1 0.00
166 60 0.21
167 3 0.01
168 11 0.04
169 78 0.27
170 9 0.03
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (163 bp):
AAAATTCATCAAATATTATTATTTAATATATTAAATCAGTTTTCAAAAATTCATTCATTTTCATG
AGTGTTTCATTTTTCTTTGAAATTTTCCTATTTTTGAAATACAAAGTTTTCTATTCCATAAATGT
TTTCAAGGGGATTTTTCTTGGTTTTTAATTTTT
Found at i:2486408 original size:15 final size:14
Alignment explanation
Indices: 2486384--2486427 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
2486374 TGAAAAAAAT
*
2486384 AGAGAGAAAAAGAA
1 AGAGAAAAAAAGAA
2486398 AGAAGAAAAAAAGAA
1 AG-AGAAAAAAAGAA
*
2486413 AGAGAAAGAAAGAA
1 AGAGAAAAAAAGAA
2486427 A
1 A
2486428 AATGAGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (14 bp):
AGAGAAAAAAAGAA
Found at i:2486420 original size:25 final size:26
Alignment explanation
Indices: 2486377--2486426 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
2486367 GGCTAATTGA
*
2486377 AAAAAATAGAGAGAAAAAGAAAGAAG
1 AAAAAATAGAAAGAAAAAGAAAGAAG
*
2486403 AAAAAA-AGAAAGAGAAAGAAAGAA
1 AAAAAATAGAAAGAAAAAGAAAGAA
2486427 AAATGAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (26 bp):
AAAAAATAGAAAGAAAAAGAAAGAAG
Found at i:2486437 original size:25 final size:24
Alignment explanation
Indices: 2486378--2486439 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 24
2486368 GCTAATTGAA
2486378 AAAAATAGAGAGAAAAAGAAAGAAG
1 AAAAAT-GAGAGAAAAAGAAAGAAG
*
2486403 AAAAA--A-AGAAAGAGAAAGAAAG
1 AAAAATGAGAGAAAAAGAAAG-AAG
2486425 AAAAATGAGAGAAAA
1 AAAAATGAGAGAAAA
2486440 TTAAAAGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
21 11 0.35
22 9 0.29
24 1 0.03
25 10 0.32
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (24 bp):
AAAAATGAGAGAAAAAGAAAGAAG
Found at i:2487636 original size:140 final size:142
Alignment explanation
Indices: 2487317--2487707 Score: 425
Period size: 142 Copynumber: 2.8 Consensus size: 142
2487307 AAATCATCAC
** * * ** *
2487317 CTTAATTTTTCATA-ATTTCTAATATTTATATGGTTTTCTGTAAGGGTTTGGAAATCTTCAAAAC
1 CTTAATTTTTCA-AGATTTCTAATATTCCTATGGTTTTCCGTAAGGGTATAAAAATTTTCAAAAC
** ** * *
2487381 CTTTTGTATCTTTTCGGTTCTCCATTAAGGTACGAAATGAATTTTTTTGGAAACTAAAAATTAAA
65 CTTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTTTTGAAAACTAAAAATTAAA
*
2487446 TAAAAATTATTAT
130 TAAAAAGTATTAT
* * * *
2487459 CTTAATTTTTCAAGATTTCTAATATTCCAATAGTTTTCCGTATGGGTATATAAATTTTCAAAACC
1 CTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCGTAAGGGTATAAAAATTTTCAAAACC
* * * *
2487524 ATTCATATCTTTTCAGTTCTTCATT-AGGTAAAAAAT-AAATTTTTT-AAAATTAAAAAATTAAA
66 TTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTTTTGAAAACT-AAAAATTAAA
*
2487586 TAAAAAGTATTGT
130 TAAAAAGTATTAT
* * *
2487599 CTTAATTTTTCAAGATTTCT-ATATTCCTATGGTTTTTCATAGGGGTATAAAAATCTTT-AAAAC
1 CTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCGTAAGGGTATAAAAAT-TTTCAAAAC
* * * ** *
2487662 TTTTCTTATCTTTTCGGTTCTCCATAAAGGTACGAAATGAGATTTT
65 CTTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTT
2487708 CAAAATTTAC
Statistics
Matches: 207, Mismatches: 37, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
139 57 0.28
140 61 0.29
141 16 0.08
142 73 0.35
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.44
Consensus pattern (142 bp):
CTTAATTTTTCAAGATTTCTAATATTCCTATGGTTTTCCGTAAGGGTATAAAAATTTTCAAAACC
TTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTTTTGAAAACTAAAAATTAAAT
AAAAAGTATTAT
Found at i:2487682 original size:139 final size:142
Alignment explanation
Indices: 2487368--2487707 Score: 395
Period size: 140 Copynumber: 2.4 Consensus size: 142
2487358 AAGGGTTTGG
* * ** * *
2487368 AAATCTTCAAAACCTTTT-GTATCTTTTCGGTTCTCCATTAAGGTACGAAATGAATTTTTTTGGA
1 AAATCTTTAAAA-CTTTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTTTTGAA
*
2487432 AACTAAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGATTTCTAATATTCCAATAGTTTTC
65 AACTAAAAATTAAATAAAAAGTATTATCTTAATTTTTCAAGATTTCTAATATTCCAATAGTTTTC
* * *
2487497 CGTATGGGTATAT
130 CATAGGGGTATAA
** * *
2487510 AAAT-TTTCAAAACCATTCATATCTTTTCAGTTCTTCATT-AGGTAAAAAAT-AAATTTTTT-AA
1 AAATCTTT-AAAACTTTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTTTTGAA
* * * *
2487571 AATTAAAAAATTAAATAAAAAGTATTGTCTTAATTTTTCAAGATTTCT-ATATTCCTATGGTTTT
65 AACT-AAAAATTAAATAAAAAGTATTATCTTAATTTTTCAAGATTTCTAATATTCCAATAGTTTT
*
2487635 TCATAGGGGTATAA
129 CCATAGGGGTATAA
* * ** *
2487649 AAATCTTTAAAACTTTTCTTATCTTTTCGGTTCTCCATAAAGGTACGAAATGAGATTTT
1 AAATCTTTAAAACTTTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTT
2487708 CAAAATTTAC
Statistics
Matches: 164, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
139 57 0.35
140 61 0.37
141 20 0.12
142 26 0.16
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (142 bp):
AAATCTTTAAAACTTTTCATATCTTTTCGGTTCTCCATTAAGGTAAAAAATGAAATTTTTTGAAA
ACTAAAAATTAAATAAAAAGTATTATCTTAATTTTTCAAGATTTCTAATATTCCAATAGTTTTCC
ATAGGGGTATAA
Found at i:2488114 original size:156 final size:155
Alignment explanation
Indices: 2487798--2488154 Score: 368
Period size: 156 Copynumber: 2.3 Consensus size: 155
2487788 AAAGGTGCCG
* * * ** * *
2487798 AGTACTTTTACGTCGAAAG-TATCCCATAGGGGT-TTTTTCATAATTTTTCAAAATTGAGTCTTA
1 AGTACTTCTACGTC-AAAGATATCCCTTAAGGGTATTTTTTGTAATTTTCCAAAACTGAGTCTTA
* * * * *
2487861 GGTTGTCATCAGTTTGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAAT
65 GGTTGTCACCAGTCTGCTTTTATGCCAAAGATGGGCATTTAGGATAGGTTCATCCCATCTATAAT
* * *
2487926 CTTTTTTTAGTCATTTAAGAGTATCA
130 CCTTTTTAAGCCATTTAAGAGTATCA
*
2487952 AGTACTTCTAAGTCAAAGATATCCCTTAAGGGTATTTTTTGTAATTTTCCAAAACTGAGTCTTAG
1 AGTACTTCTACGTCAAAGATATCCCTTAAGGGTATTTTTTGTAATTTTCCAAAACTGAGTCTTAG
* * ** * *
2488017 GTTGTCGCCAGGTCTGCTTTTATGTCAAAGATGGGTTTTTAGGATCGGTTCATCCTATCTATAAT
66 GTTGTCACCA-GTCTGCTTTTATGCCAAAGATGGGCATTTAGGATAGGTTCATCCCATCTATAAT
* * * *
2488082 CCTTTTTAAGCCCTTTAGGGGT-GCTA
130 CCTTTTTAAGCCATTTAAGAGTATC-A
*
2488108 GGTACTTCTACGTCAAA-AGTAT-CCTCT-AGAGGTA-TTTTTGTAATTTT
1 AGTACTTCTACGTCAAAGA-TATCCCT-TAAG-GGTATTTTTTGTAATTTT
2488155 GCTAGAATCG
Statistics
Matches: 168, Mismatches: 28, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
153 4 0.02
154 24 0.14
155 55 0.33
156 85 0.51
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (155 bp):
AGTACTTCTACGTCAAAGATATCCCTTAAGGGTATTTTTTGTAATTTTCCAAAACTGAGTCTTAG
GTTGTCACCAGTCTGCTTTTATGCCAAAGATGGGCATTTAGGATAGGTTCATCCCATCTATAATC
CTTTTTAAGCCATTTAAGAGTATCA
Found at i:2491370 original size:158 final size:159
Alignment explanation
Indices: 2491176--2491523 Score: 454
Period size: 158 Copynumber: 2.2 Consensus size: 159
2491166 TGTTAAAAGA
* * ** *
2491176 AAATAATATAATAATATTATTTTTT-TAATTTTCAAAAATCTCATTTCATACCTTAATAGG-GAA
1 AAATGATAAAATAATATT-TTTTTTATTTTTTTCAAAAATCTCATTCCATACCTTAAT-GGAGAA
* * *
2491239 -CTGAAAAGATACAAAAAGTTTTGAAGATTTCTATA-CCCTAGGAAAAACAATAAGAATATTAGA
64 TC-GAAAAGATACAAAAAGTTTTAAAGATTCCTATACCCCCAGGAAAAACAATAAGAATATTAGA
2491302 AATCTTT-AAAAATTAAGATAATAATTTTTATT
128 AAT-TTTGAAAAATTAAGATAATAATTTTTATT
* *
2491334 AAATGATAAAATAATATTTTTTTTATTTTTTTCAAAAATTTCATTCCGTACCTTAATGGAGAATC
1 AAATGATAAAATAATATTTTTTTTATTTTTTTCAAAAATCTCATTCCATACCTTAATGGAGAATC
** * * *
2491399 GAAAAGATATGAAAAGTTTTAAAGATTCCTATACCCCCATGAAAAACCATAGGAATATTAGAAAT
66 GAAAAGATACAAAAAGTTTTAAAGATTCCTATACCCCCAGGAAAAACAATAAGAATATTAGAAAT
2491464 TTTGAAAAATTAAGATAATAATTTTTATT
131 TTTGAAAAATTAAGATAATAATTTTTATT
* *
2491493 TAATGATAAAAAAATATTTATTTATTATTTT
1 AAATGATAAAATAATATTT-TTT-TTATTTT
2491524 ATTTATTTTT
Statistics
Matches: 166, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
157 8 0.05
158 78 0.47
159 70 0.42
160 3 0.02
161 7 0.04
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.38
Consensus pattern (159 bp):
AAATGATAAAATAATATTTTTTTTATTTTTTTCAAAAATCTCATTCCATACCTTAATGGAGAATC
GAAAAGATACAAAAAGTTTTAAAGATTCCTATACCCCCAGGAAAAACAATAAGAATATTAGAAAT
TTTGAAAAATTAAGATAATAATTTTTATT
Found at i:2491511 original size:159 final size:160
Alignment explanation
Indices: 2491204--2491523 Score: 452
Period size: 159 Copynumber: 2.0 Consensus size: 160
2491194 ATTTTTTTAA
* * *
2491204 TTTTCAAAAATCTCATTTCATACCTTAATAGGGAACTGAAAAGATACAAAAAGTTTTGAAGATTT
1 TTTTCAAAAATCTCATTCCATACCTTAATAGGGAACTGAAAAGATACAAAAAGTTTTAAAGATTC
*
2491269 CTATACCCTAGGAAAAACAATAAGAATATTAGAAATCTTTAAAAATTAAGATAATAATTTTTATT
66 CTATACCCCAGGAAAAACAATAAGAATATTAGAAATCTTTAAAAATTAAGATAATAATTTTTATT
*
2491334 AAATGATAAAATAATATTT-TTT-TTATTT
131 AAATGATAAAAAAATATTTATTTATTATTT
* * **
2491362 TTTTCAAAAATTTCATTCCGTACCTTAAT-GGAGAA-TCGAAAAGATATGAAAAGTTTTAAAGAT
1 TTTTCAAAAATCTCATTCCATACCTTAATAGG-GAACT-GAAAAGATACAAAAAGTTTTAAAGAT
* * *
2491425 TCCTATACCCCCATGAAAAACCATAGGAATATTAGAAAT-TTTGAAAAATTAAGATAATAATTTT
64 TCCTATA-CCCCAGGAAAAACAATAAGAATATTAGAAATCTTT-AAAAATTAAGATAATAATTTT
*
2491489 TATTTAATGATAAAAAAATATTTATTTATTATTT
127 TATTAAATGATAAAAAAATATTTATTTATTATTT
2491523 T
1 T
2491524 ATTTATTTTT
Statistics
Matches: 143, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
157 3 0.02
158 61 0.43
159 69 0.48
160 3 0.02
161 7 0.05
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (160 bp):
TTTTCAAAAATCTCATTCCATACCTTAATAGGGAACTGAAAAGATACAAAAAGTTTTAAAGATTC
CTATACCCCAGGAAAAACAATAAGAATATTAGAAATCTTTAAAAATTAAGATAATAATTTTTATT
AAATGATAAAAAAATATTTATTTATTATTT
Found at i:2491526 original size:12 final size:11
Alignment explanation
Indices: 2491509--2491542 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
2491499 TAAAAAAATA
2491509 TTTATTTATTAT
1 TTTATTTATT-T
2491521 TTTATTTATTT
1 TTTATTTATTT
2491532 TTTATTT-TTT
1 TTTATTTATTT
2491542 T
1 T
2491543 AAAAAATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.18
11 8 0.36
12 10 0.45
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTATTTATTT
Found at i:2491528 original size:16 final size:16
Alignment explanation
Indices: 2491507--2491543 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
2491497 GATAAAAAAA
2491507 TATTTATTTATTATTT
1 TATTTATTTATTATTT
*
2491523 TATTTATTTTTTATTT
1 TATTTATTTATTATTT
2491539 T-TTTA
1 TATTTA
2491544 AAAAATTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTTATTTATTATTT
Found at i:2493287 original size:154 final size:154
Alignment explanation
Indices: 2493097--2493537 Score: 387
Period size: 154 Copynumber: 2.9 Consensus size: 154
2493087 TACTAATGAA
* * * * **
2493097 AATATTTGATGAATTTTAAAAATTTTGACTCGAGAAAAATCCAACCGAAAAAAAT-TACGAAGTA
1 AATATTTGAAGAATTTTAAAAATTATAAATTTAGAAAAATCCAACCGAAAAAAATGTA-GAA--A
* * * *
2493161 A-AAAATTTCATGT-TTTAGA-GATCGAAAAAATTCTAAAACTCATAAAATAAATTTAAATTTTC
63 AGAAAACTTC--GTATTTAGATAATAGAAAAAATTCTAAAACACATAAAATAAATTTAAATTTTC
*
2493223 AAAACTAACTTAGTATCAATTAAAC-AAT
126 AAAACTAACTTAATATCAATTAAACAAAT
* ** ** **
2493251 AATATTTGAAGAATTTTGAAAATTATAAATTTAGAAAAATCTTATTGAAAAATTTGTAGAAAAGA
1 AATATTTGAAGAATTTTAAAAATTATAAATTTAGAAAAATCCAACCGAAAAAAATGTAGAAAAGA
* * * * * *
2493316 AAACTTCGTATTTCGATAATAGGAAAAATTTTGAAACACATAAAATAAATTTAATTTTTTAAAAC
66 AAACTTCGTATTTAGATAATAGAAAAAATTCTAAAACACATAAAATAAATTTAAATTTTCAAAAC
*
2493381 TAATTTAATATCAATTAAACAAAT
131 TAACTTAATATCAATTAAACAAAT
* *** * *
2493405 AATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTTGCTGAAAAATTTATGTAG--AA
1 AATATTTGAAGAATTTTAAAAATTATAAATTTAGAAAAATCCAACCGAAAAA--AATGTAGAAAA
* * * * * * * *
2493468 GAAAAC-TCTATATTTCA-ATAACAGGAAAAATTCTAAAACTCGTAAAATAAATTGAATTTTTTA
64 GAAAACTTC-GTATTT-AGATAATAGAAAAAATTCTAAAACACATAAAATAAATTTAAATTTTCA
2493531 AAACTAA
127 AAACTAA
2493538 TTTTATGGTG
Statistics
Matches: 240, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
151 2 0.01
152 7 0.03
153 67 0.28
154 156 0.65
155 2 0.01
156 6 0.03
ACGTcount: A:0.50, C:0.08, G:0.09, T:0.33
Consensus pattern (154 bp):
AATATTTGAAGAATTTTAAAAATTATAAATTTAGAAAAATCCAACCGAAAAAAATGTAGAAAAGA
AAACTTCGTATTTAGATAATAGAAAAAATTCTAAAACACATAAAATAAATTTAAATTTTCAAAAC
TAACTTAATATCAATTAAACAAAT
Found at i:2493395 original size:153 final size:154
Alignment explanation
Indices: 2493186--2493540 Score: 511
Period size: 154 Copynumber: 2.3 Consensus size: 154
2493176 TAGAGATCGA
* * * *
2493186 AAAAATTCTAAAACTCATAAAATAAATTTAAATTTTCAAAACTAACTTAGTATCAATTAAAC-AA
1 AAAAATTCTAAAACTCATAAAATAAATTTAATTTTTTAAAACTAATTTAATATCAATTAAACAAA
* * *
2493250 TAATATTTGAAGAATTTTGAAAATTATAAATTTAGAAAAATCTTATTGAAAAA-TT-TGTAGAAA
66 TAATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTTACTGAAAAATTTATGTAG--A
* * *
2493313 AGAAAACT-TCGTATTTCGATAATAGG
129 AGAAAACTCT-ATATTTCAATAACAGG
* * *
2493339 AAAAATTTTGAAACACATAAAATAAATTTAATTTTTTAAAACTAATTTAATATCAATTAAACAAA
1 AAAAATTCTAAAACTCATAAAATAAATTTAATTTTTTAAAACTAATTTAATATCAATTAAACAAA
*
2493404 TAATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTTGCTGAAAAATTTATGTAGAAG
66 TAATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTTACTGAAAAATTTATGTAGAAG
2493469 AAAACTCTATATTTCAATAACAGG
131 AAAACTCTATATTTCAATAACAGG
* *
2493493 AAAAATTCTAAAACTCGTAAAATAAATTGAATTTTTTAAAACTAATTT
1 AAAAATTCTAAAACTCATAAAATAAATTTAATTTTTTAAAACTAATTT
2493541 TATGGTGATT
Statistics
Matches: 179, Mismatches: 19, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
153 55 0.31
154 116 0.65
155 3 0.02
156 5 0.03
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.35
Consensus pattern (154 bp):
AAAAATTCTAAAACTCATAAAATAAATTTAATTTTTTAAAACTAATTTAATATCAATTAAACAAA
TAATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTTACTGAAAAATTTATGTAGAAG
AAAACTCTATATTTCAATAACAGG
Found at i:2494641 original size:45 final size:45
Alignment explanation
Indices: 2494592--2494709 Score: 173
Period size: 45 Copynumber: 2.6 Consensus size: 45
2494582 CAAATATAAC
* *
2494592 AAGAAGTTTGCCCAAGGCTAAACCATCACATCAAACGAAAATGAA
1 AAGAAGTTTGACCAAGGCTAAACCATCACATCAAACGAAAATCAA
* *
2494637 AAGAAGTTTGACCAAGGCTAAACCATCACATCATACGAAGATCAA
1 AAGAAGTTTGACCAAGGCTAAACCATCACATCAAACGAAAATCAA
* * *
2494682 AAGGAGTTTGACTAGGGCTAAACCATCA
1 AAGAAGTTTGACCAAGGCTAAACCATCA
2494710 TGTCAAATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (45 bp):
AAGAAGTTTGACCAAGGCTAAACCATCACATCAAACGAAAATCAA
Found at i:2495086 original size:7 final size:7
Alignment explanation
Indices: 2495063--2495108 Score: 56
Period size: 7 Copynumber: 6.1 Consensus size: 7
2495053 ATTCTTTTCC
2495063 AAAAAAG
1 AAAAAAG
2495070 AAACAAAAG
1 -AA-AAAAG
2495079 AAAAAAG
1 AAAAAAG
2495086 AAAAAAG
1 AAAAAAG
*
2495093 AAACAAAA
1 AAA-AAAG
2495101 AAAAAAG
1 AAAAAAG
2495108 A
1 A
2495109 GGAAAAACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
7 19 0.56
8 10 0.29
9 5 0.15
ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:2495102 original size:11 final size:11
Alignment explanation
Indices: 2495062--2495102 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
2495052 TATTCTTTTC
2495062 CAAAAAAGAAA
1 CAAAAAAGAAA
*
2495073 CAAAAGAAAAAA
1 CAAAA-AAGAAA
*
2495085 GAAAAAAGAAA
1 CAAAAAAGAAA
2495096 CAAAAAA
1 CAAAAAA
2495103 AAAAGAGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (11 bp):
CAAAAAAGAAA
Found at i:2495114 original size:23 final size:23
Alignment explanation
Indices: 2495063--2495108 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
2495053 ATTCTTTTCC
2495063 AAAAAAGAAACAAAAGAAAAAAG
1 AAAAAAGAAACAAAAGAAAAAAG
2495086 AAAAAAGAAACAAAA-AAAAAAG
1 AAAAAAGAAACAAAAGAAAAAAG
2495108 A
1 A
2495109 GGAAAAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAACAAAAGAAAAAAG
Found at i:2497009 original size:28 final size:28
Alignment explanation
Indices: 2496940--2497013 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
2496930 ATAAAGCCGG
* *
2496940 GGTTGGAGTATCCCCTCG--GAAGTAACGG
1 GGTTGGAGTAT--CCTCGATGAAATAACGA
2496968 GGTTGGAGTATCCTCGATGAAATAACGA
1 GGTTGGAGTATCCTCGATGAAATAACGA
2496996 GGTTGGAGTATCCTCGAT
1 GGTTGGAGTATCCTCGAT
2497014 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 5 0.12
28 37 0.88
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (28 bp):
GGTTGGAGTATCCTCGATGAAATAACGA
Found at i:2497066 original size:52 final size:52
Alignment explanation
Indices: 2496997--2497335 Score: 180
Period size: 52 Copynumber: 6.4 Consensus size: 52
2496987 AAATAACGAG
*
2496997 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * *
2497049 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * * *
2497102 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGG
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* **** * * *
2497153 GTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
*
2497208 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATT-G-G-TATTTTTGGAAATAAAATCGGA
* * * * *
2497264 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
*
2497315 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
2497336 GAGAATTGAT
Statistics
Matches: 216, Mismatches: 42, Indels: 58
0.68 0.13 0.18
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 2 0.01
51 37 0.17
52 78 0.36
53 19 0.09
54 8 0.04
55 31 0.14
56 25 0.12
57 4 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:2497212 original size:27 final size:28
Alignment explanation
Indices: 2497149--2497224 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
2497139 GCGATAAAAC
***
2497149 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
2497177 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
2497204 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
2497225 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:2497279 original size:56 final size:51
Alignment explanation
Indices: 2497212--2497340 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
2497202 AACGGGGTTG
* *
2497212 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTG-AGAAATTAGTG----TTTTGAAAATAAAATCGGAGTTA
* *
2497268 GAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTGTGAG-AAATTAGTGTTTTGAAAATAAAATCGGAGTTA
*
2497319 GAATATCCCCGATTGTGGAGAA
1 GAGTATCCCCGATTGT-GAGAA
2497341 TTGATAAACT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
51 35 0.55
52 2 0.03
53 2 0.03
54 2 0.03
55 8 0.12
56 15 0.23
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTA
Found at i:2499714 original size:13 final size:13
Alignment explanation
Indices: 2499696--2499721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2499686 ACAAAGATCC
2499696 ATGTATCGATACA
1 ATGTATCGATACA
2499709 ATGTATCGATACA
1 ATGTATCGATACA
2499722 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2499717 original size:33 final size:33
Alignment explanation
Indices: 2499675--2499741 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2499665 AAAATTTCCA
***
2499675 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2499708 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2499741 A
1 A
2499742 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2499785 original size:19 final size:18
Alignment explanation
Indices: 2499761--2499860 Score: 103
Period size: 19 Copynumber: 5.9 Consensus size: 18
2499751 CAGTAGCTAA
2499761 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2499780 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2499795 TTA--TATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2499812 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2499827 TTA--TATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2499844 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2499861 TCGTTGAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 25
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.26
15 6 0.09
16 4 0.06
17 6 0.09
18 3 0.04
19 32 0.46
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2499803 original size:13 final size:13
Alignment explanation
Indices: 2499785--2499839 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 13
2499775 AATACTTATG
2499785 TATCGATACATTA
1 TATCGATACATTA
2499798 TATCGATACAAAACTTA
1 TATCGATAC---A-TTA
2499815 TGTATCGATACATTA
1 --TATCGATACATTA
2499830 TATCGATACA
1 TATCGATACA
2499840 AAACTTATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 19 0.53
15 3 0.08
16 2 0.06
17 3 0.08
19 9 0.25
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:2499807 original size:32 final size:32
Alignment explanation
Indices: 2499766--2499858 Score: 177
Period size: 32 Copynumber: 2.9 Consensus size: 32
2499756 GCTAATTATG
*
2499766 TATCGATACAATACTTATGTATCGATACATTA
1 TATCGATACAAAACTTATGTATCGATACATTA
2499798 TATCGATACAAAACTTATGTATCGATACATTA
1 TATCGATACAAAACTTATGTATCGATACATTA
2499830 TATCGATACAAAACTTATGTATCGATACA
1 TATCGATACAAAACTTATGTATCGATACA
2499859 AATCGTTGAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (32 bp):
TATCGATACAAAACTTATGTATCGATACATTA
Found at i:2500652 original size:55 final size:55
Alignment explanation
Indices: 2500569--2502016 Score: 2232
Period size: 55 Copynumber: 26.3 Consensus size: 55
2500559 ATAAAGTGTA
* * ** * ** *
2500569 TCCTGCTCATTGAGGAGTAAAAAATGCCACAAACACGTGTGGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* * *
2500624 TCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2500679 TCCTGCTCTTTGAAGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2500734 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
2500789 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2500844 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
2500899 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2500954 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2501009 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2501064 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
2501119 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
2501174 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
2501229 TCCTGCTCCTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* * * *
2501284 TCCTACTCTTTGGGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGATAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* * *
2501339 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTATAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2501394 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
2501449 TCCTGCTCCTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2501504 TCCTGCTCTTTGGGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
2501559 TCCTGCTCTTTG-GGTACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGG-ACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2501614 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2501669 TACTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
2501724 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2501779 TCCTGCTCTTTGAGGACTGGAAGACGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2501834 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2501889 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2501944 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2501999 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
2502017 AAAAAAGCGG
Statistics
Matches: 1316, Mismatches: 53, Indels: 48
0.93 0.04 0.03
Matches are distributed among these distances:
54 34 0.03
55 1252 0.95
56 30 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:2500921 original size:27 final size:27
Alignment explanation
Indices: 2500839--2500921 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
2500829 GGGCTTTAAG
2500839 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
2500866 A-ATG-CCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
2500894 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
2500921 A
1 A
2500922 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:2501613 original size:29 final size:29
Alignment explanation
Indices: 2501580--2501668 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 29
2501570 GGGTACTGAA
2501580 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
** * * * *
2501609 AGGTGTCCTGC-TCTT-TGAGGAC-TGAA-
1 AGGTG-CCACCAACTTGTGTGGGCTTTAAG
2501635 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
2501664 AGGTG
1 AGGTG
2501669 TACTGCTCTT
Statistics
Matches: 43, Mismatches: 12, Indels: 10
0.66 0.18 0.15
Matches are distributed among these distances:
25 3 0.07
26 8 0.19
27 8 0.19
28 8 0.19
29 13 0.30
30 3 0.07
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (29 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAG
Found at i:2501639 original size:26 final size:25
Alignment explanation
Indices: 2501550--2501639 Score: 65
Period size: 26 Copynumber: 3.4 Consensus size: 25
2501540 GTGTGGGCTT
2501550 TGAAAGGTGTCCTGCTCTTTGGGTAC
1 TGAAAGGTGTCCTGCTCTTTGGG-AC
** * *
2501576 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TG-GGAC
*
2501603 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTG-GGAC
2501631 TGAAAGGTG
1 TGAAAGGTG
2501640 CCACCAACTT
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
25 3 0.06
26 17 0.36
27 6 0.13
28 10 0.21
29 8 0.17
30 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (25 bp):
TGAAAGGTGTCCTGCTCTTTGGGAC
Found at i:2501858 original size:26 final size:26
Alignment explanation
Indices: 2501829--2501969 Score: 92
Period size: 26 Copynumber: 5.2 Consensus size: 26
2501819 GGGCTTTAAG
2501829 AGGTGTCCTGCTCTTTGGGGACTGAA
1 AGGTGTCCTGCTCTTTGGGGACTGAA
** * *
2501855 AGGTG-CCACCAACTTGTGTGGG-CTTTAA
1 AGGTGTCCTGC-TCTT-TG-GGGAC-TGAA
2501883 GAGGTGTCCTGCTCTTTGGGGACTGAA
1 -AGGTGTCCTGCTCTTTGGGGACTGAA
** * *
2501910 AGGTG-CCACCAACTTGTGTGGG-CTTTAA
1 AGGTGTCCTGC-TCTT-TG-GGGAC-TGAA
2501938 GAGGTGTCCTGCTCTTTGGGGACTGAA
1 -AGGTGTCCTGCTCTTTGGGGACTGAA
2501965 AGGTG
1 AGGTG
2501970 CCACCAACTT
Statistics
Matches: 85, Mismatches: 16, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
25 6 0.07
26 21 0.25
27 18 0.21
28 18 0.21
29 16 0.19
30 6 0.07
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (26 bp):
AGGTGTCCTGCTCTTTGGGGACTGAA
Found at i:2515576 original size:28 final size:28
Alignment explanation
Indices: 2515507--2515580 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
2515497 ATAAAGCCGG
* *
2515507 GGTTGGAGTATCCCCTCG--GAAGTAACGG
1 GGTTGGAGTAT--CCTCGATGAAATAACGA
2515535 GGTTGGAGTATCCTCGATGAAATAACGA
1 GGTTGGAGTATCCTCGATGAAATAACGA
2515563 GGTTGGAGTATCCTCGAT
1 GGTTGGAGTATCCTCGAT
2515581 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 5 0.12
28 37 0.88
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (28 bp):
GGTTGGAGTATCCTCGATGAAATAACGA
Found at i:2515633 original size:52 final size:52
Alignment explanation
Indices: 2515564--2515902 Score: 162
Period size: 52 Copynumber: 6.4 Consensus size: 52
2515554 AAATAACGAG
*
2515564 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * * *
2515616 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATACAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * * *
2515669 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGG
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* **** * * *
2515720 GTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
* *
2515775 GTTGGAGTATCCTCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATT-G-G-TATTTTTGGAAATAAAATCGGA
* * * * *
2515831 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
*
2515882 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
2515903 GAGAATTGAT
Statistics
Matches: 212, Mismatches: 46, Indels: 58
0.67 0.15 0.18
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 2 0.01
51 37 0.17
52 76 0.36
53 19 0.09
54 8 0.04
55 30 0.14
56 24 0.11
57 4 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:2515779 original size:27 final size:28
Alignment explanation
Indices: 2515716--2515791 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
2515706 GCGATAAAAC
***
2515716 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
2515744 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
2515771 CGGGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
2515792 TGTGAAGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:2515848 original size:56 final size:51
Alignment explanation
Indices: 2515779--2515907 Score: 134
Period size: 51 Copynumber: 2.4 Consensus size: 51
2515769 AACGGGGTTG
* * *
2515779 GAGTATCCTCGATTGTGAAGAAATTGGTGTTTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTG-AGAAATTAGTG----TTTTGAAAATAAAATCGGAGTTA
* *
2515835 GAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTGTGAG-AAATTAGTGTTTTGAAAATAAAATCGGAGTTA
*
2515886 GAATATCCCCGATTGTGGAGAA
1 GAGTATCCCCGATTGT-GAGAA
2515908 TTGATAAACT
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
51 35 0.56
52 2 0.03
53 2 0.03
54 2 0.03
55 8 0.13
56 14 0.22
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTA
Found at i:2518303 original size:32 final size:33
Alignment explanation
Indices: 2518246--2518311 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 33
2518236 AAAATTTCCA
***
2518246 AATGTATCGATACAAAGATCCATGTATCG-TAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2518278 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2518311 A
1 A
2518312 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 25 0.86
33 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2518355 original size:19 final size:19
Alignment explanation
Indices: 2518331--2518398 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 19
2518321 CAGTAGCTAA
*
2518331 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
*
2518350 TTATGTATCG--A-AACA-
1 TTATGTATCGATACAAAAC
*
2518365 TTA--TATCGATAAAAAAC
1 TTATGTATCGATACAAAAC
2518382 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2518399 TCGTTGAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
13 5 0.12
15 4 0.10
16 6 0.15
17 4 0.10
19 21 0.52
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:2518478 original size:20 final size:21
Alignment explanation
Indices: 2518453--2518509 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
2518443 ATATTTGTAG
2518453 AATGTATCGATACATTC-ACA
1 AATGTATCGATACATTCTACA
2518473 AATGTATCGATACATTCTACA
1 AATGTATCGATACATTCTACA
2518494 AATGTATCGATACATT
1 AATGTATCGATACATT
2518510 TGGAATTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 17 0.47
21 19 0.53
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATTCTACA
Found at i:2518961 original size:64 final size:64
Alignment explanation
Indices: 2518874--2519046 Score: 285
Period size: 64 Copynumber: 2.7 Consensus size: 64
2518864 TGGCAATCTT
* *
2518874 TTCTCAAAGCCCACGAATT-AGTGGCATTTTGTCCTAAAGTCTACGACTCCGTGGCACCTTTTTC
1 TTCTCAAAGCCCACG-ATTCAGTGGCATTTTGTCCTAAAGTCCACGAATCCGTGGCACCTTTTTC
*
2518938 TTCTCAAAGCCCACGATTCAGTGGCATTTTATCCTAAAGTCCACGAATCCGTGGCACCTTTTTC
1 TTCTCAAAGCCCACGATTCAGTGGCATTTTGTCCTAAAGTCCACGAATCCGTGGCACCTTTTTC
*
2519002 TTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCTAAAAGTCCAC
1 TTCTCAAAGCCCACGATTCAGTGGCATTTTGTCCT-AAAGTCCAC
2519047 AACTTAGTGG
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
63 3 0.03
64 90 0.88
65 9 0.09
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (64 bp):
TTCTCAAAGCCCACGATTCAGTGGCATTTTGTCCTAAAGTCCACGAATCCGTGGCACCTTTTTC
Found at i:2519017 original size:34 final size:33
Alignment explanation
Indices: 2518874--2519031 Score: 134
Period size: 34 Copynumber: 4.9 Consensus size: 33
2518864 TGGCAATCTT
* *
2518874 TTCTCAAAGCCCACGAATTAGTGGCATTTTGTC
1 TTCTCAAAGCCCACGAATCAGTGGCATTTTATC
* * * *
2518907 --CT-AAAGTCTACGACTCCGTGGCACCTTTT-TC
1 TTCTCAAAGCCCACGAATCAGTGGCA--TTTTATC
*
2518938 TTCTCAAAGCCCACGATTCAGTGGCATTTTATC
1 TTCTCAAAGCCCACGAATCAGTGGCATTTTATC
* *
2518971 --CT-AAAGTCCACGAATCCGTGGCACCTTTT-TC
1 TTCTCAAAGCCCACGAATCAGTGGCA--TTTTATC
*
2519002 TTCTCAAAGCCCACGACTCAGTGGCATTTT
1 TTCTCAAAGCCCACGAATCAGTGGCATTTT
2519032 GTCCTAAAAG
Statistics
Matches: 99, Mismatches: 15, Indels: 23
0.72 0.11 0.17
Matches are distributed among these distances:
30 34 0.34
31 8 0.08
32 16 0.16
33 6 0.06
34 35 0.35
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (33 bp):
TTCTCAAAGCCCACGAATCAGTGGCATTTTATC
Found at i:2519132 original size:27 final size:27
Alignment explanation
Indices: 2519100--2519240 Score: 129
Period size: 27 Copynumber: 5.0 Consensus size: 27
2519090 TTTTGTCTCA
*
2519100 AAGCCCACAACTCTGTGGCACCCTTTT
1 AAGCCCACAACTCTGTGGCACTCTTTT
* *
2519127 AAGCCCACAACTCAGTGGCATCTCTTTCCA
1 AAGCCCACAACTCTGTGGCA-CTCTTT--T
* * * * *
2519157 AAGTCCACGACTCAGTGGCATTTTTCTT
1 AAGCCCACAACTCTGTGGCACTCTT-TT
* *
2519185 CAAAGTCCACAACTCTGTGGCACCCTTTT
1 --AAGCCCACAACTCTGTGGCACTCTTTT
*
2519214 AAGCCCACAACTTTGTGGCACTCTTTT
1 AAGCCCACAACTCTGTGGCACTCTTTT
2519241 TCCCTTTTAA
Statistics
Matches: 92, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
27 43 0.47
28 5 0.05
29 5 0.05
30 39 0.42
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (27 bp):
AAGCCCACAACTCTGTGGCACTCTTTT
Found at i:2519172 original size:87 final size:88
Alignment explanation
Indices: 2519043--2519239 Score: 285
Period size: 87 Copynumber: 2.3 Consensus size: 88
2519033 TCCTAAAAGT
* **
2519043 CCACAACTTAGTGGCAATCTC-TTCTCAATGCCCACGACTCAGTGGGGTTTTGTC-TCAAAGCCC
1 CCACAACTTAGTGGC-ATCTCTTTCTCAAAGCCCACGACTCAGTGGCATTTT-TCTTCAAAGCCC
2519106 ACAACTCTGTGGCACCCTTTTAAGC
64 ACAACTCTGTGGCACCCTTTTAAGC
* * *
2519131 CCACAACTCAGTGGCATCTCTTTC-CAAAGTCCACGACTCAGTGGCATTTTTCTTCAAAGTCCAC
1 CCACAACTTAGTGGCATCTCTTTCTCAAAGCCCACGACTCAGTGGCATTTTTCTTCAAAGCCCAC
2519195 AACTCTGTGGCACCCTTTTAAGC
66 AACTCTGTGGCACCCTTTTAAGC
*
2519218 CCACAACTTTGTGGCA-CTCTTT
1 CCACAACTTAGTGGCATCTCTTT
2519240 TTCCCTTTTA
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
86 8 0.08
87 74 0.75
88 17 0.17
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (88 bp):
CCACAACTTAGTGGCATCTCTTTCTCAAAGCCCACGACTCAGTGGCATTTTTCTTCAAAGCCCAC
AACTCTGTGGCACCCTTTTAAGC
Found at i:2519205 original size:30 final size:29
Alignment explanation
Indices: 2518848--2519206 Score: 176
Period size: 30 Copynumber: 11.7 Consensus size: 29
2518838 ATACCTTTTT
* *
2518848 AAAGTCCACAACTTAGTGGCAATCTTTTCTC
1 AAAGCCCACAACTCAGTGGC-AT-TTTTCTC
*
2518879 AAAGCCCACGAA-TTAGTGGCATTTTGTC-C
1 AAAGCCCAC-AACTCAGTGGCATTTT-TCTC
* * * *
2518908 TAAAGTCTACGACTCCGTGGCACCTTTTTCTTCTC
1 -AAAGCCCACAACTCAGTGGCA----TTT-TTCTC
* *
2518943 AAAGCCCACGATTCAGTGGCATTTTATC-C
1 AAAGCCCACAACTCAGTGGCATTTT-TCTC
* *
2518972 TAAAGTCCACGAA-TCCGTGGCACCTTTTTCTTCTC
1 -AAAGCCCAC-AACTCAGTGGCA----TTT-TTCTC
* *
2519007 AAAGCCCACGACTCAGTGGCATTTTGTCCTA
1 AAAGCCCACAACTCAGTGGCATTTT-T-CTC
* * *
2519038 AAAGTCCACAACTTAGTGGCAATCTCTTCTC
1 AAAGCCCACAACTCAGTGGC-AT-TTTTCTC
* * **
2519069 AATGCCCACGACTCAGTGGGGTTTTGTCTC
1 AAAGCCCACAACTCAGTGGCATTTT-TCTC
* **
2519099 AAAGCCCACAACTCTGTGGCACCCTTT-T-
1 AAAGCCCACAACTCAGTGGCA-TTTTTCTC
2519127 -AAGCCCACAACTCAGTGGCATCTCTTTC-C
1 AAAGCCCACAACTCAGTGGCAT-T-TTTCTC
* *
2519156 AAAGTCCACGACTCAGTGGCATTTTTCTTC
1 AAAGCCCACAACTCAGTGGCATTTTTC-TC
* *
2519186 AAAGTCCACAACTCTGTGGCA
1 AAAGCCCACAACTCAGTGGCA
2519207 CCCTTTTAAG
Statistics
Matches: 252, Mismatches: 43, Indels: 67
0.70 0.12 0.19
Matches are distributed among these distances:
27 19 0.08
28 7 0.03
29 12 0.05
30 104 0.41
31 55 0.22
32 5 0.02
33 3 0.01
34 43 0.17
35 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (29 bp):
AAAGCCCACAACTCAGTGGCATTTTTCTC
Found at i:2519246 original size:35 final size:35
Alignment explanation
Indices: 2519207--2519307 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 35
2519197 CTCTGTGGCA
* *
2519207 CCCTTTTAAGCCCACAACTTTGTGGCACTCTTTTT
1 CCCTTTTAAGTCCACAACTTCGTGGCACTCTTTTT
*
2519242 CCCTTTTAAGTCCACAA-TTCCGTGGCATTCTTTTT
1 CCCTTTTAAGTCCACAACTT-CGTGGCACTCTTTTT
* *
2519277 -CCTTTTAAGTCCACGACTCCGTGGCACTCTT
1 CCCTTTTAAGTCCACAACTTCGTGGCACTCTT
2519308 GTTCTTTTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
34 28 0.48
35 30 0.52
ACGTcount: A:0.17, C:0.32, G:0.13, T:0.39
Consensus pattern (35 bp):
CCCTTTTAAGTCCACAACTTCGTGGCACTCTTTTT
Found at i:2519286 original size:34 final size:34
Alignment explanation
Indices: 2519208--2519315 Score: 130
Period size: 34 Copynumber: 3.2 Consensus size: 34
2519198 TCTGTGGCAC
* *
2519208 CCTTTTAAGCCCACAACTT-TGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAA-TTCCGTGGCACTCTTTTT
*
2519242 CCCTTTTAAGTCCACAATTCCGTGGCATTCTTTTT
1 -CCTTTTAAGTCCACAATTCCGTGGCACTCTTTTT
* * *
2519277 CCTTTTAAGTCCACGACTCCGTGGCACTCTTGTT
1 CCTTTTAAGTCCACAATTCCGTGGCACTCTTTTT
2519311 -CTTTT
1 CCTTTT
2519316 CAAAGCCCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
33 5 0.08
34 32 0.49
35 28 0.43
ACGTcount: A:0.16, C:0.30, G:0.13, T:0.42
Consensus pattern (34 bp):
CCTTTTAAGTCCACAATTCCGTGGCACTCTTTTT
Found at i:2519422 original size:33 final size:32
Alignment explanation
Indices: 2519317--2519454 Score: 145
Period size: 33 Copynumber: 4.2 Consensus size: 32
2519307 TGTTCTTTTC
* * *
2519317 AAAGCCCACACAAGTCGATGGCAAACCCTTCTACC
1 AAAGCCCACACAAGTCGGTGGC-AA-CCATCT-CT
* * *
2519352 AAAGCCTACACAAGTCAGTGGCAACCCTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCATCTCT
* *
2519384 AAAGCCCGCACAAGTTGGTGGCAACCATCCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCAT-CTCT
*
2519417 AAAGCCCACACAAGTCGGTGGCAACCCT-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCATCTCT
2519448 -AAGCCCA
1 AAAGCCCA
2519455 ATATAGCTGG
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
30 7 0.08
31 3 0.03
32 24 0.27
33 34 0.38
34 2 0.02
35 19 0.21
ACGTcount: A:0.31, C:0.36, G:0.17, T:0.16
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAACCATCTCT
Found at i:2519505 original size:49 final size:49
Alignment explanation
Indices: 2519447--2520197 Score: 956
Period size: 49 Copynumber: 15.7 Consensus size: 49
2519437 GCAACCCTTC
* *
2519447 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2519496 TAAGTCCAATGTAGCCGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
2519539 TAAGCCCAATATAACTGGCCTTGAATCAGCAAATTGACACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
2519588 TAAGTCCAATGTAGCTGGCCTTAAATCAGCAAATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
2519631 TAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
2519680 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--C-T-TC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2519725 TAAGTCCAATATAGTTGGCCTTGAATCAGCATC-TTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCA-CATTGGCACCTTCATCTT
* *
2519774 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
2519823 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2519872 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
2519921 TATGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2519970 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2520019 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
2520067 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2520110 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGTACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* *
2520162 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
2520198 ACATCCTTTT
Statistics
Matches: 617, Mismatches: 58, Indels: 51
0.85 0.08 0.07
Matches are distributed among these distances:
43 112 0.18
45 42 0.07
46 2 0.00
47 4 0.01
48 46 0.07
49 374 0.61
50 1 0.00
52 36 0.06
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:2520185 original size:52 final size:55
Alignment explanation
Indices: 2520107--2520220 Score: 162
Period size: 52 Copynumber: 2.1 Consensus size: 55
2520097 ACATTGGCAC
* **
2520107 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGTA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
2520159 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
2520214 CTTTAAG
1 CTTTAAG
2520221 CCCCATATCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
52 37 0.69
53 2 0.04
54 5 0.09
55 10 0.19
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:2521225 original size:13 final size:13
Alignment explanation
Indices: 2521207--2521231 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2521197 ATTACTCAAA
2521207 TGTATCGATACAT
1 TGTATCGATACAT
2521220 TGTATCGATACA
1 TGTATCGATACA
2521232 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2521295 original size:51 final size:52
Alignment explanation
Indices: 2521240--2521363 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
2521230 CACTGATCTT
* *
2521240 TGTATCGATACATGCAGGCAAA-TTGGCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
2521291 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
2521343 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
2521364 CTTTTCATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
51 22 0.32
52 46 0.68
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:2523623 original size:17 final size:17
Alignment explanation
Indices: 2523601--2523634 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2523591 TTCGTACTTT
2523601 AATTAATCAAAGAAAAA
1 AATTAATCAAAGAAAAA
2523618 AATTAATCAAAGAAAAA
1 AATTAATCAAAGAAAAA
2523635 TCTAGACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AATTAATCAAAGAAAAA
Found at i:2526271 original size:17 final size:17
Alignment explanation
Indices: 2526251--2526308 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
2526241 TCCTTTCTCT
2526251 TTTCTTCTTTTTTTTTG
1 TTTCTTCTTTTTTTTTG
*
2526268 TTTCTT-TTTGGTTTTTG
1 TTTCTTCTTT-TTTTTTG
2526285 TTCTTCTTTCCTTTTTTTTTG
1 -T-TTC-TT-CTTTTTTTTTG
2526306 TTT
1 TTT
2526309 ACCTTATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
16 3 0.09
17 12 0.36
18 1 0.03
19 5 0.15
20 3 0.09
21 6 0.18
22 3 0.09
ACGTcount: A:0.00, C:0.12, G:0.09, T:0.79
Consensus pattern (17 bp):
TTTCTTCTTTTTTTTTG
Found at i:2530082 original size:49 final size:49
Alignment explanation
Indices: 2529994--2530931 Score: 1132
Period size: 49 Copynumber: 19.2 Consensus size: 49
2529984 GAGATAAGGT
* *
2529994 TTGGACTTAAAGATGAGAAAGATGCCAATATGCTGATTCAAAGCCAGCGATA
1 TTGGACTTAAAGAT--G-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
*
2530046 TTGGACTTAAAGATGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * * *
2530095 TTGGGCTTAAAGATGAGGGTGCCAATGTGCTGATTCAAGGCCAACGACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
** *
2530144 TTGGTTTTAAAGATGACGGTGCCAATATGCTGATTCAAGGCCAGCGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
*** * * *
2530193 CCAGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCAAGCGACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
2530242 TTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
1 TTGGACTTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * *
2530294 TTGGACTTAAAGAGGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
** *
2530343 TTGGACTTAAAGATGACAAAGGCACCAATATGCTGATTCAAGGCCAGCAATA
1 TTGGACTTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * *
2530395 TTGGACTTAAAGATGACA-ATGTCAATGTGCTGATTCAAGGCCAGCGACA
1 TTGGACTTAAAGATGA-AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
*
2530444 TTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATA
1 TTGGACTTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * * * *
2530496 TTGGACTTAACGGTGAAGGTACCAATGTGTTGATTCAAGGCCAGCGACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* **
2530545 TTAGACTTAAAGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * *
2530594 TTGGATTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * *
2530643 TTGGACTTAAAGATGAAGGTGCCAATGTGCAGATTTAAGGCCAACGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * *
2530692 TTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * *
2530735 TTGGTCTTAAAGATG-AGGTGCCAATATGCTGATTTAAGGCCAGTGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * *
2530783 TTGGACTT----A--AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
*
2530826 TTGGACTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
2530874 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTGAAGGCCAACGATA
1 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
2530923 TTGGACTTA
1 TTGGACTTA
2530932 GAAGGGTTGC
Statistics
Matches: 757, Mismatches: 105, Indels: 51
0.83 0.12 0.06
Matches are distributed among these distances:
43 72 0.10
44 1 0.00
45 1 0.00
47 2 0.00
48 79 0.10
49 457 0.60
50 2 0.00
51 1 0.00
52 142 0.19
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
Found at i:2530185 original size:98 final size:98
Alignment explanation
Indices: 2529994--2530931 Score: 1222
Period size: 101 Copynumber: 9.6 Consensus size: 98
2529984 GAGATAAGGT
* * * *
2529994 TTGGACTTAAAGATGAGAAAGATGCCAATATGCTGATTCAAAGCCAGCGATATTGGACTTAAAGA
1 TTGGACTTAAAGAT--G-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
*
2530059 TGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATA
63 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * **
2530095 TTGGGCTTAAAGATGAGGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTTTTAAAGATGA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
*
2530160 CGGTGCCAATATGCTGATTCAAGGCCAGCGATA
66 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
*** * * *
2530193 CCAGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCAAGCGACATTGGACTTAAAGATGA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-
2530258 CAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
65 --AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
2530294 TTGGACTTAAAGAGGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-
** *
2530359 CAAAGGCACCAATATGCTGATTCAAGGCCAGCAATA
65 --AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
2530395 TTGGACTTAAAGATGACA-ATGTCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
1 TTGGACTTAAAGATGA-AGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG
*
2530459 ACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATA
65 ---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * * * **
2530496 TTGGACTTAACGGTGAAGGTACCAATGTGTTGATTCAAGGCCAGCGACATTAGACTTAAAGACAA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
2530561 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
66 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
2530594 TTGGATTTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
* * * *
2530659 AGGTGCCAATGTGCAGATTTAAGGCCAACGATA
66 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
2530692 TTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATG-
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
* *
2530750 AGGTGCCAATATGCTGATTTAAGGCCAGTGATA
66 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
2530783 TTGGACTT----A--AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGA-CA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
2530841 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
66 AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * * *
2530874 TTGGACTTAAAGATGAAGGTGCCAATATGCTGATTGAAGGCCAACGATATTGGACTTA
1 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
2530932 GAAGGGTTGC
Statistics
Matches: 749, Mismatches: 76, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
91 121 0.16
92 47 0.06
95 1 0.00
97 38 0.05
98 253 0.34
99 1 0.00
100 1 0.00
101 286 0.38
102 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (98 bp):
TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
AGGTGCCAATATGCTGATTCAAGGCCAGCGATA
Found at i:2530795 original size:22 final size:22
Alignment explanation
Indices: 2530770--2530837 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
2530760 ATGCTGATTT
2530770 AAGGCCAGTGATATTGGACTTA
1 AAGGCCAGTGATATTGGACTTA
* * *
2530792 AAGGTGCCAATG-TGTT-GA-TTC
1 AA-G-GCCAGTGATATTGGACTTA
* *
2530813 AAGGCCAGCGACATTGGACTTA
1 AAGGCCAGTGATATTGGACTTA
2530835 AAG
1 AAG
2530838 ACAAGGTGCC
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
19 5 0.15
20 3 0.09
21 6 0.18
22 9 0.27
23 4 0.12
24 6 0.18
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (22 bp):
AAGGCCAGTGATATTGGACTTA
Found at i:2531034 original size:27 final size:27
Alignment explanation
Indices: 2530968--2531056 Score: 97
Period size: 27 Copynumber: 3.1 Consensus size: 27
2530958 CTTTAGAAGG
*
2530968 GGGTGCCACGGAGTTGTGGACTTGAAAGGAAA
1 GGGTGCCACGGAGTTGTGGAC---ATA--AAA
*
2531000 AGGTGCCACGGAGTTGTGGACATAAAA
1 GGGTGCCACGGAGTTGTGGACATAAAA
* *
2531027 GGGTGCCACGGAGTTTTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACATAAAA
2531054 GGG
1 GGG
2531057 AAGAAGAGTG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 30 0.58
29 2 0.04
32 20 0.38
ACGTcount: A:0.28, C:0.13, G:0.38, T:0.20
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACATAAAA
Found at i:2531037 original size:59 final size:61
Alignment explanation
Indices: 2530968--2531148 Score: 204
Period size: 59 Copynumber: 2.9 Consensus size: 61
2530958 CTTTAGAAGG
*
2530968 GGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCACGGAGTTGTGGACAT-AAA-A
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGGAGTTGTGGACATGAAAGA
*
2531027 GGGTGCCACGGAGTTTTGGACTTAAAAGGGAAGAAGAGTGCCACGGAGTTGTGGCTTACATGAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA-GGAA-AAG-GTGCCACGGAGTTGTGG---ACATGAAA
2531092 GA
60 GA
* ** * * *
2531094 GAGTGCCATAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGAC
1 GGGTGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAGGTGCCACGGAGTTGTGGAC
2531149 TTAGATGGGA
Statistics
Matches: 103, Mismatches: 9, Indels: 16
0.80 0.07 0.12
Matches are distributed among these distances:
59 25 0.24
60 4 0.04
61 3 0.03
62 17 0.17
63 2 0.02
65 4 0.04
66 19 0.18
67 20 0.19
68 5 0.05
69 4 0.04
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.20
Consensus pattern (61 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGGAGTTGTGGACATGAAAGA
Found at i:2531161 original size:34 final size:34
Alignment explanation
Indices: 2531023--2531363 Score: 132
Period size: 34 Copynumber: 10.7 Consensus size: 34
2531013 TTGTGGACAT
* * *
2531023 AAAAGGGTGCCACGGAGTTTTGGACTTAAAAGGGA
1 AAAAGAGTGCCACGAAGTTGTGGACTT-AAAGGGA
* * * *
2531058 AGAAGAGTGCCACGGAGTTGTGG-CTTACA-TGA
1 AAAAGAGTGCCACGAAGTTGTGGACTTAAAGGGA
* * * **
2531090 AAGAGAGTGCCA-TAGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGA-AGTTGTGGAC-TTAAAGGGA
*
2531125 AAAAG-GTGCCACGAAGTTGTGGACTTAGATGGG-
1 AAAAGAGTGCCACGAAGTTGTGGACTTA-AAGGGA
* *
2531158 AAAAGAATGCCAC-AGAGTTGTGGGCTT-------
1 AAAAGAGTGCCACGA-AGTTGTGGACTTAAAGGGA
* * *
2531185 AAAAGGGTGCCACGGAGTTATGGACTTAGAA-GGA
1 AAAAGAGTGCCACGAAGTTGTGGACTTA-AAGGGA
*
2531219 AAAAGAGTGCCAC-AGAGTTGTGGGCTT-------
1 AAAAGAGTGCCACGA-AGTTGTGGACTTAAAGGGA
*
2531246 AAAAGGGTGCCAC-AGAGTTGTGGACTTAGAA-GGA
1 AAAAGAGTGCCACGA-AGTTGTGGACTTA-AAGGGA
* * *
2531280 AAAAGAGTGCCACGGAGTTATGGGCTT-------
1 AAAAGAGTGCCACGAAGTTGTGGACTTAAAGGGA
* * *
2531307 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGAAGTTGTGGACTTAAAGGGA
* *
2531341 AAAAAAGTGCCACGGAGTTGTGG
1 AAAAGAGTGCCACGAAGTTGTGG
2531364 GCTTTGTAGA
Statistics
Matches: 235, Mismatches: 39, Indels: 65
0.69 0.12 0.19
Matches are distributed among these distances:
27 70 0.30
32 20 0.09
33 12 0.05
34 106 0.45
35 27 0.11
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (34 bp):
AAAAGAGTGCCACGAAGTTGTGGACTTAAAGGGA
Found at i:2531189 original size:27 final size:27
Alignment explanation
Indices: 2531158--2531338 Score: 128
Period size: 27 Copynumber: 6.2 Consensus size: 27
2531148 CTTAGATGGG
* *
2531158 AAAAGAATGCCACAGAGTTGTGGGCTT
1 AAAAGAGTGCCACAGAGTTGTGGACTT
* * *
2531185 AAAAGGGTGCCACGGAGTTATGGACTT
1 AAAAGAGTGCCACAGAGTTGTGGACTT
*
2531212 AGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 -------AAAAGAGTGCCACAGAGTTGTGGACTT
*
2531246 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGAGTGCCACAGAGTTGTGGACTT
* * *
2531273 AGAAGGAAAAAGAGTGCCACGGAGTTATGGGCTT
1 -------AAAAGAGTGCCACAGAGTTGTGGACTT
* *
2531307 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGAGTGCCACAGAGTTGTGGACTT
2531334 AAAAG
1 AAAAG
2531339 GAAAAAAAGT
Statistics
Matches: 122, Mismatches: 18, Indels: 28
0.73 0.11 0.17
Matches are distributed among these distances:
27 76 0.62
34 46 0.38
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (27 bp):
AAAAGAGTGCCACAGAGTTGTGGACTT
Found at i:2531209 original size:61 final size:61
Alignment explanation
Indices: 2531124--2531367 Score: 364
Period size: 61 Copynumber: 4.0 Consensus size: 61
2531114 CTTTAAAAAG
* * * *
2531124 AAAAAGGTGCCACGAAGTTGTGGACTTAGATGGGAAAAGAATGCCACAGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTGTGGGCTT
* *
2531185 AAAAGGGTGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTGTGGGCTT
* * * *
2531246 AAAAGGGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTATGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTGTGGGCTT
* *
2531307 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAA-TGCCACAGAGTTGTGGGCTT
2531368 TGTAGAAAAG
Statistics
Matches: 168, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 1 0.01
61 167 0.99
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTGTGGGCTT
Found at i:2531275 original size:122 final size:123
Alignment explanation
Indices: 2531064--2531367 Score: 400
Period size: 122 Copynumber: 2.4 Consensus size: 123
2531054 GGGAAGAAGA
* * * *
2531064 GTGCCACGGAGTTGTGG-CTTACATGAAAGAGAGTGCCATAGAGTTGTGGGCTTTAAAAAGAAAA
1 GTGCCACGGAGTTGTGGACTTAAAGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAAG----
* * *
2531128 AGGTGCCACGAAGTTGTGGACTTAGATGGGAAAAGAATGCCACAGAGTTGTGGGCTTAAAAGG
61 AGGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTATGGGCTTAAAAGG
*
2531191 GTGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT-AAAAG-GGT
1 GTGCCACGGAGTTGTGGACTTA-AAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAAGAGGT
* *
2531254 GCCAC-AGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTATGGGCTTAAAAGG
65 GCCACGA-AGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTATGGGCTTAAAAGG
* *
2531313 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTT
1 GTGCCACGGAGTTGTGGACTT-AAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
2531368 TGTAGAAAAG
Statistics
Matches: 160, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
121 1 0.01
122 105 0.66
123 1 0.01
127 21 0.13
128 6 0.04
129 26 0.16
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (123 bp):
GTGCCACGGAGTTGTGGACTTAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAAGAGGTG
CCACGAAGTTGTGGACTTAGAAGGAAAAAGAATGCCACAGAGTTATGGGCTTAAAAGG
Found at i:2531423 original size:32 final size:32
Alignment explanation
Indices: 2531339--2531425 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
2531329 GACTTAAAAG
* * *
2531339 GAAAAAAA-G-TGCCACGGAGTTGTGGGCTTT
1 GAAAAAAAGGATGCCACTGAGTCGTGGACTTT
* * *
2531369 GTAGAAAAGGATGCCATTGAGTCGTGGACTTT
1 GAAAAAAAGGATGCCACTGAGTCGTGGACTTT
2531401 GAAAAAAAGGATGCCACTGAGTCGT
1 GAAAAAAAGGATGCCACTGAGTCGT
2531426 AAGAAGGTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
30 6 0.13
31 1 0.02
32 39 0.85
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.23
Consensus pattern (32 bp):
GAAAAAAAGGATGCCACTGAGTCGTGGACTTT
Found at i:2537531 original size:15 final size:15
Alignment explanation
Indices: 2537511--2537541 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2537501 TAAAAATGTC
*
2537511 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2537526 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2537541 C
1 C
2537542 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2539948 original size:20 final size:20
Alignment explanation
Indices: 2539925--2539997 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2539915 ACAATTCAAA
2539925 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2539945 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2539966 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2539986 GTATCGATACAT
1 GTATCGATACAT
2539998 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2539969 original size:21 final size:21
Alignment explanation
Indices: 2539943--2540018 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2539933 ACATGTTGCA
2539943 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2539964 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2539984 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2540005 ATGTATCGATACAT
1 ATGTATCGATACAT
2540019 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2539976 original size:41 final size:41
Alignment explanation
Indices: 2539925--2540018 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2539915 ACAATTCAAA
*
2539925 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2539966 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2540007 GTATCGATACAT
1 GTATCGATACAT
2540019 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2540075 original size:13 final size:13
Alignment explanation
Indices: 2540057--2540082 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2540047 TACAGCAAGT
2540057 ATGTATCGATACA
1 ATGTATCGATACA
2540070 ATGTATCGATACA
1 ATGTATCGATACA
2540083 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2544162 original size:15 final size:15
Alignment explanation
Indices: 2544142--2544172 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2544132 TAAAAATGTC
*
2544142 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2544157 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2544172 C
1 C
2544173 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2546265 original size:20 final size:21
Alignment explanation
Indices: 2546186--2546264 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
2546176 AATGTCCAAA
*
2546186 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
2546206 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
2546231 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
2546251 TTGTATCGATACAT
1 ATGTATCGATACAT
2546265 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:2546269 original size:13 final size:13
Alignment explanation
Indices: 2546251--2546315 Score: 112
Period size: 13 Copynumber: 5.0 Consensus size: 13
2546241 ACATTTTTCT
2546251 TTGTATCGATACA
1 TTGTATCGATACA
2546264 TTGTATCGATACA
1 TTGTATCGATACA
*
2546277 CTGTATCGATACA
1 TTGTATCGATACA
2546290 TTGTATCGATACA
1 TTGTATCGATACA
*
2546303 CTGTATCGATACA
1 TTGTATCGATACA
2546316 GGGTGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2546288 original size:26 final size:26
Alignment explanation
Indices: 2546252--2546315 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
2546242 CATTTTTCTT
2546252 TGTATCGATACATTGTATCGATACAC
1 TGTATCGATACATTGTATCGATACAC
2546278 TGTATCGATACATTGTATCGATACAC
1 TGTATCGATACATTGTATCGATACAC
2546304 TGTATCGATACA
1 TGTATCGATACA
2546316 GGGTGATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (26 bp):
TGTATCGATACATTGTATCGATACAC
Found at i:2548790 original size:20 final size:20
Alignment explanation
Indices: 2548767--2548839 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2548757 ACAATTCAAA
2548767 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2548787 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2548808 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2548828 GTATCGATACAT
1 GTATCGATACAT
2548840 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2548811 original size:21 final size:21
Alignment explanation
Indices: 2548785--2548860 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2548775 ACATGTTGCA
2548785 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2548806 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2548826 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2548847 ATGTATCGATACAT
1 ATGTATCGATACAT
2548861 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2548818 original size:41 final size:41
Alignment explanation
Indices: 2548767--2548860 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2548757 ACAATTCAAA
*
2548767 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2548808 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2548849 GTATCGATACAT
1 GTATCGATACAT
2548861 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2549690 original size:13 final size:13
Alignment explanation
Indices: 2549658--2549706 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
2549648 TAAGCTTTCA
2549658 GTATCGATACACT
1 GTATCGATACACT
* *
2549671 G-ATCGATATAAT
1 GTATCGATACACT
2549683 GTATCGATACACT
1 GTATCGATACACT
2549696 GTATCGATACA
1 GTATCGATACA
2549707 GGGGGATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
12 10 0.32
13 21 0.68
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (13 bp):
GTATCGATACACT
Found at i:2549861 original size:20 final size:20
Alignment explanation
Indices: 2549818--2549863 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2549808 AAATTTTTTG
2549818 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2549839 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2549859 CAAAA
1 CAAAA
2549864 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:2551352 original size:22 final size:20
Alignment explanation
Indices: 2551318--2551360 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 20
2551308 TGATTAATGT
2551318 TTTGCTTGACTTTGTGTTTA
1 TTTGCTTGACTTTGTGTTTA
2551338 TTTGCATTGCACTTTGTGTTTA
1 TTTGC-TTG-ACTTTGTGTTTA
2551360 T
1 T
2551361 GGAAATGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.24
21 3 0.14
22 13 0.62
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (20 bp):
TTTGCTTGACTTTGTGTTTA
Found at i:2552226 original size:20 final size:20
Alignment explanation
Indices: 2552181--2552232 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
2552171 GTAGCCAAAC
* **
2552181 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACAAAAAA
2552201 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
2552220 TTGTATCGATACA
1 TTGTATCGATACA
2552233 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:2555854 original size:19 final size:20
Alignment explanation
Indices: 2555814--2555854 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
2555804 TCCCATGTGA
*
2555814 ATGTATCGATACAATTTTTG
1 ATGTATCGATACAATATTTG
2555834 ATGTATCGATAC-ATATTTG
1 ATGTATCGATACAATATTTG
2555853 AT
1 AT
2555855 AATATAGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACAATATTTG
Found at i:2555924 original size:13 final size:13
Alignment explanation
Indices: 2555906--2555931 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2555896 CAATTTTTTG
2555906 TGTATCGATACAT
1 TGTATCGATACAT
2555919 TGTATCGATACAT
1 TGTATCGATACAT
2555932 ACTTTGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2555946 original size:32 final size:33
Alignment explanation
Indices: 2555886--2555949 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2555876 TACAAGCCAA
**
2555886 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
*
2555919 TGTATCGATAC-ATACTTTGTGTGTCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2555950 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2556620 original size:40 final size:39
Alignment explanation
Indices: 2556574--2556654 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 39
2556564 TTTTCTTTCT
* *
2556574 CCCTTAACTAA-AGTAATTTTAACAAATTCGTACATTCTCC
1 CCCTTAA-TAAGA-TAAATTTAACAAATTCATACATTCTCC
* * *
2556614 CCCTTAATAAGATAAATTTAGCAAATTTATGCATTCTCC
1 CCCTTAATAAGATAAATTTAACAAATTCATACATTCTCC
2556653 CC
1 CC
2556655 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
39 27 0.77
40 8 0.23
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.35
Consensus pattern (39 bp):
CCCTTAATAAGATAAATTTAACAAATTCATACATTCTCC
Found at i:2558056 original size:21 final size:20
Alignment explanation
Indices: 2558027--2558069 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
2558017 GGCTAGTATG
* *
2558027 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
2558048 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
2558068 GG
1 GG
2558070 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:2558519 original size:13 final size:13
Alignment explanation
Indices: 2558503--2558539 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
2558493 AATCCCCCTA
*
2558503 TATCGATACAGTG
1 TATCGATACAATG
2558516 TATCGATACAATG
1 TATCGATACAATG
*
2558529 TATCAATACAA
1 TATCGATACAA
2558540 AGAAAAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:2560639 original size:15 final size:15
Alignment explanation
Indices: 2560619--2560649 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2560609 AATTCGTTTG
*
2560619 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2560634 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2560649 G
1 G
2560650 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2563963 original size:13 final size:13
Alignment explanation
Indices: 2563945--2563970 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2563935 CAATTTTTTG
2563945 TGTATCGATACAT
1 TGTATCGATACAT
2563958 TGTATCGATACAT
1 TGTATCGATACAT
2563971 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2563982 original size:32 final size:33
Alignment explanation
Indices: 2563925--2563988 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2563915 TACAAGCCAA
**
2563925 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2563958 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2563989 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2568858 original size:52 final size:52
Alignment explanation
Indices: 2568710--2568838 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
2568700 CAAAATATGA
2568710 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
2568762 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
2568814 AAATTTGCCTACATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2568839 AAGATTAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:2568948 original size:19 final size:19
Alignment explanation
Indices: 2568924--2568966 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
2568914 AGCGATACAT
*
2568924 TGTATCAATGCAA-AGCTTA
1 TGTATCAATACAACA-CTTA
*
2568943 TGTATCGATACAACACTTA
1 TGTATCAATACAACACTTA
2568962 TGTAT
1 TGTAT
2568967 TGATACAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (19 bp):
TGTATCAATACAACACTTA
Found at i:2571942 original size:28 final size:28
Alignment explanation
Indices: 2571907--2571963 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
2571897 TCGGGGTTCA
*
2571907 AGTATCCCCTCA-GAAATAATGGGATTGG
1 AGTATCCCC-CATGAAATAACGGGATTGG
*
2571935 AGTATCCCCGATGAAATAACGGGATTGG
1 AGTATCCCCCATGAAATAACGGGATTGG
2571963 A
1 A
2571964 ATACCCTCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (28 bp):
AGTATCCCCCATGAAATAACGGGATTGG
Found at i:2571974 original size:28 final size:28
Alignment explanation
Indices: 2571919--2571974 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
2571909 TATCCCCTCA
* *
2571919 GAAATAATGGGATTGGAGTATCCCCGAT
1 GAAATAACGGGATTGGAATATCCCCGAT
2571947 GAAATAACGGGATTGGAATA-CCCTCGAT
1 GAAATAACGGGATTGGAATATCCC-CGAT
2571975 TATGAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (28 bp):
GAAATAACGGGATTGGAATATCCCCGAT
Found at i:2573335 original size:45 final size:45
Alignment explanation
Indices: 2573280--2573399 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 45
2573270 AATAAAATAC
* * *
2573280 GTCCTGCTCTTTGAGGATAAAAGGGAAAAGAAGGGAATGAAGTGT
1 GTCCTACTCTTTGAGGATAAAAGGGAAAAGAAGGAAATGAAATGT
* * * *
2573325 GTCTTACTCTTTGAAGACAAAAGGGAGAAGAAGGAAATGAAATGT
1 GTCCTACTCTTTGAGGATAAAAGGGAAAAGAAGGAAATGAAATGT
*
2573370 GTCCTGCTCTTTGAGGAT-AAAGGAGAAAAG
1 GTCCTACTCTTTGAGGATAAAAGG-GAAAAG
2573400 GAAAAGGCAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
44 5 0.08
45 57 0.92
ACGTcount: A:0.38, C:0.10, G:0.30, T:0.23
Consensus pattern (45 bp):
GTCCTACTCTTTGAGGATAAAAGGGAAAAGAAGGAAATGAAATGT
Found at i:2573589 original size:61 final size:60
Alignment explanation
Indices: 2573395--2573701 Score: 324
Period size: 61 Copynumber: 5.1 Consensus size: 60
2573385 GATAAAGGAG
* * * * *
2573395 AAAAGGAAAAGGCATCCTGCTCTTTAAGGTCTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGAAAA-GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
2573456 GAAAA--AAAAGACGTCCTACTCTTTGAGGACT----AGTTGCTACCAACTTGTGTGGGCTTT
1 -AAAAGGAAAAG-CATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTTGTGTGGGCTTT
* * * * * *
2573513 GCAAA-GAGAAAGCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTCGAGTGGTCTTT
1 -AAAAGGA-AAAGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
2573574 AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAA-TGACACCAACTTGTGTGGGCTTT
1 AAAAGGA-AAAGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
*
2573635 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAA-GCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
2573697 AAAAG
1 AAAAG
2573702 TTATCTTGCT
Statistics
Matches: 208, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
56 2 0.01
57 25 0.12
58 20 0.10
59 5 0.02
60 26 0.12
61 95 0.46
62 35 0.17
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (60 bp):
AAAAGGAAAAGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:2573653 original size:122 final size:119
Alignment explanation
Indices: 2573394--2573701 Score: 358
Period size: 122 Copynumber: 2.6 Consensus size: 119
2573384 GGATAAAGGA
* * * *
2573394 GAAAAGGAAAAGGCATCCTGCTCTTTAAGGTCTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA
1 GAAAAGGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-AA
* **
2573459 AA-AAAAGACGTCCTACTCTTTGAGGACTAGTTGCTACCAACTTGTGTGGGCTTT
65 AAGAAAAGACATCCTACTCTTTGAGGACTAAATGCTACCAACTTGTGTGGGCTTT
* * * * *
2573513 GCAAA-GAGAAA-GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTCGAGTGGTCTTTAA
1 GAAAAGGA-AAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAA
*
2573576 AAGGAGAAAG-CATCCTGCTCTTTGAGGACTGGAAAATGAC-ACCAACTTGTGTGGGCTTT
65 AA-GA-AAAGACATCCTACTCTTTGAGGACT---AAATG-CTACCAACTTGTGTGGGCTTT
* *
2573635 -AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAA
1 GAAAAGGAAAAGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTAA
2573699 AAG
65 AAG
2573702 TTATCTTGCT
Statistics
Matches: 158, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
117 4 0.03
118 44 0.28
119 26 0.16
120 4 0.03
121 6 0.04
122 45 0.28
123 29 0.18
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (119 bp):
GAAAAGGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAA
AGAAAAGACATCCTACTCTTTGAGGACTAAATGCTACCAACTTGTGTGGGCTTT
Found at i:2573819 original size:217 final size:212
Alignment explanation
Indices: 2573533--2573939 Score: 568
Period size: 217 Copynumber: 1.9 Consensus size: 212
2573523 AGCATCCTAC
*
2573533 TCTTTGAGGACTGGAAGGTGCCACCAACTCGAGTGGTCTTTAAAAGGAGAAAGCATCCTGCTCTT
1 TCTTTGAGGACTGGAAGGTGCCACAAACTCGAGTGGTCTTTAAAAGGAGAAAGCATCCTGCTCTT
*
2573598 TGAGGACTGGAAAATGACACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAG
66 TGAGGACTGGAAAATGACACCAACTTGTGTGGGCTTT------AAAAGGCATCCTACTCTTTGAG
* * ** *
2573663 GACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGTTATCTTGCTCTTTGAGGACT-AAAG
125 GACTAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAG
2573727 GGCGAAAGGAGAGAGCGTCCTGT
190 GGCGAAAGGAGAGAGCGTCCTGT
* * * *
2573750 TCTTTGAGGACTAGGAA-GTGCCACAAACTTGTGTAGG-CTTTAAAAGGAGAAGGCGTCCTGCTC
1 TCTTTGAGGACT-GGAAGGTGCCACAAACTCGAGT-GGTCTTTAAAAGGAGAAAGCATCCTGCTC
* * * *
2573813 TTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCTTGCTCTTTGAGGACT
64 TTTGAGGACTGGAAAATGACACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACT
* *
2573878 AAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
129 AAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
2573940 TGCCACCAAC
Statistics
Matches: 170, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
211 72 0.42
212 5 0.03
217 87 0.51
218 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (212 bp):
TCTTTGAGGACTGGAAGGTGCCACAAACTCGAGTGGTCTTTAAAAGGAGAAAGCATCCTGCTCTT
TGAGGACTGGAAAATGACACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAA
AAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGGCGAA
AGGAGAGAGCGTCCTGT
Found at i:2573962 original size:266 final size:271
Alignment explanation
Indices: 2573467--2574089 Score: 768
Period size: 266 Copynumber: 2.3 Consensus size: 271
2573457 AAAAAAAAGA
* ** * * * *
2573467 CGTCCTACTCTTTGAGGACTAGTTGCTA-C-C-AACTTGTGTGGGCTTTGCAAA-GAGAAAGCAT
1 CGTCCTGCTCTTTGAGGACTAGAAGGTACCACAAACTTGTGT-GGCTTT-AAAAGGAGAAGGCGT
* * *
2573528 CCTACTCTTTGAGGACT-GGAAGGTGCCACCAACTCGAGTGGTCTTTAAAAGGAGAAAGCATCCT
64 CCTGCTCTTTGAGGACTGGGAAGATGCCACCAACTCGAGTGGGCTTTAAAA-GAG--AGCATCCT
**
2573592 GCTCTTTGAGGACTGGAAAATGACACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTC
126 GCTCTTTGAGGACTAAAAAATGACACCAACTTGTGTGGGCTTT---A-GAAAAGGCGTCCTACTC
** * *
2573657 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGTTATCTTGCTCTTTGAGGAC
187 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGAC
2573722 TAAAGGGCGAAAGGAGAGAG
252 TAAAGGGCGAAAGGAGAGAG
* *
2573742 CGTCCTGTTCTTTGAGGACTAGGAA-GTGCCACAAACTTGTGTAGGCTTTAAAAGGAGAAGGCGT
1 CGTCCTGCTCTTTGAGGACTA-GAAGGTACCACAAACTTGTGT-GGCTTTAAAAGGAGAAGGCGT
* * *
2573806 CCTGCTCTTTGAGGACTGGGAA-ATGCCACCAACTTGTGTGGGCTTT-AAA-AG-GCATCTTGCT
64 CCTGCTCTTTGAGGACTGGGAAGATGCCACCAACTCGAGTGGGCTTTAAAAGAGAGCATCCTGCT
* *
2573867 CTTTGAGGACTAAAAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGGCGTCCTGCTCTTTGAG
129 CTTTGAGGACT-AAAAAATGACACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTACTCTTTGAG
* *
2573930 GACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAGG
193 GACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGG
*
2573994 GTGAAAGGAGAGAG
258 GCGAAAGGAGAGAG
* * *
2574008 CGTCCTGCTCTTTGAGGACTAGAAGGTACCACCAACTTATGTGAGCTTTAAAAGGAAAAGGCGTC
1 CGTCCTGCTCTTTGAGGACTAGAAGGTACCACAAACTTGTGTG-GCTTTAAAAGGAGAAGGCGTC
*
2574073 CTGCTCTTTGTGGACTG
65 CTGCTCTTTGAGGACTG
2574090 AAAAGTGAAA
Statistics
Matches: 306, Mismatches: 33, Indels: 27
0.84 0.09 0.07
Matches are distributed among these distances:
265 4 0.01
266 137 0.45
267 24 0.08
268 1 0.00
272 20 0.07
273 26 0.08
275 22 0.07
276 2 0.01
277 7 0.02
278 59 0.19
279 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (271 bp):
CGTCCTGCTCTTTGAGGACTAGAAGGTACCACAAACTTGTGTGGCTTTAAAAGGAGAAGGCGTCC
TGCTCTTTGAGGACTGGGAAGATGCCACCAACTCGAGTGGGCTTTAAAAGAGAGCATCCTGCTCT
TTGAGGACTAAAAAATGACACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTACTCTTTGAGGAC
TAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGGCG
AAAGGAGAGAG
Found at i:2573963 original size:55 final size:55
Alignment explanation
Indices: 2573741--2573989 Score: 295
Period size: 55 Copynumber: 4.4 Consensus size: 55
2573731 AAAGGAGAGA
* * * *
2573741 GCGTCCTGTTCTTTGAGGACTAGGAAGTGCCACAAACTTGTGTAGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAG
* *
2573802 GCGTCCTGCTCTTTGAGGACTGGGAAA-TGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
2573857 GCATCTTGCTCTTTGAGGACTAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACT-AGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
2573913 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
2573968 GCATCCTACTCTTTGAGGACTA
1 GCGTCCTGCTCTTTGAGGACTA
2573990 AAGGGTGAAA
Statistics
Matches: 166, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
54 3 0.02
55 72 0.43
56 47 0.28
61 41 0.25
62 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:2575098 original size:1 final size:1
Alignment explanation
Indices: 2575094--2575159 Score: 51
Period size: 1 Copynumber: 66.0 Consensus size: 1
2575084 CTTTATGCTG
* * * * ** * * *
2575094 TTTTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTGTTTGGTTTTTTTTGTTGTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2575159 T
1 T
2575160 GAAAAAGAAT
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (1 bp):
T
Found at i:2575111 original size:9 final size:9
Alignment explanation
Indices: 2575097--2575159 Score: 92
Period size: 9 Copynumber: 6.8 Consensus size: 9
2575087 TATGCTGTTT
2575097 TTTTTTTTG
1 TTTTTTTTG
2575106 TTTTTTTTG
1 TTTTTTTTG
2575115 -TTTTTTTG
1 TTTTTTTTG
2575123 TTTTTGTTTGG
1 TTTTT-TTT-G
2575134 TTTTTTTTG
1 TTTTTTTTG
2575143 TTGTTTTTTG
1 TT-TTTTTTG
2575153 TTTTTTT
1 TTTTTTT
2575160 GAAAAAGAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.16
9 21 0.42
10 15 0.30
11 6 0.12
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:2575111 original size:10 final size:10
Alignment explanation
Indices: 2575096--2575159 Score: 80
Period size: 10 Copynumber: 6.7 Consensus size: 10
2575086 TTATGCTGTT
2575096 TTTTTTTTTG
1 TTTTTTTTTG
2575106 -TTTTTTTTG
1 TTTTTTTTTG
2575115 --TTTTTTTG
1 TTTTTTTTTG
*
2575123 TTTTTGTTTG
1 TTTTTTTTTG
*
2575133 GTTTTTTTTG
1 TTTTTTTTTG
*
2575143 TTGTTTTTTG
1 TTTTTTTTTG
2575153 TTTTTTT
1 TTTTTTT
2575160 GAAAAAGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
8 8 0.17
9 9 0.20
10 29 0.63
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:2587606 original size:51 final size:50
Alignment explanation
Indices: 2587541--2587709 Score: 205
Period size: 51 Copynumber: 3.3 Consensus size: 50
2587531 GAAAATAACG
* * * **
2587541 GGGTTGGAGTATCCCCGATTGTGGAAAATCGATGCTTTAGAAATAAGGCC
1 GGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACC
* *
2587591 GAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCA-AAATAAAATC
1 G-GGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTT-AGAAATAAAACC
* * *
2587642 GGAGTTGGAGTATCCCCGATTATGGAAAATTGGTATTTTAGAAATAAAACTG
1 GG-GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAAC-C
2587694 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
2587710 TCGGAATAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
50 3 0.03
51 96 0.94
52 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (50 bp):
GGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACC
Found at i:2587755 original size:28 final size:29
Alignment explanation
Indices: 2587693--2587767 Score: 102
Period size: 28 Copynumber: 2.7 Consensus size: 29
2587683 AAATAAAACT
*
2587693 GGGGTTGGAGTATCCCC--TCGGAATAAC
1 GGGGTTGGAGTATCCCCGATCGAAATAAC
*
2587720 GGGATTGGAGTATCCCCGAT-GAAATAAC
1 GGGGTTGGAGTATCCCCGATCGAAATAAC
*
2587748 GGGGTTGGAGTACCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
2587768 TATGAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 16 0.38
28 25 0.60
29 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.21
Consensus pattern (29 bp):
GGGGTTGGAGTATCCCCGATCGAAATAAC
Found at i:2587806 original size:109 final size:110
Alignment explanation
Indices: 2587675--2587885 Score: 316
Period size: 110 Copynumber: 1.9 Consensus size: 110
2587665 GGAAAATTGG
* * *
2587675 TATTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCG-GAATAACGGGATTGGAGTATCCCCGA
1 TATTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGA
*
2587739 TGAAATAACGGGGTTGGAGTACCCCCGATTATGAAAAAAGATCAA
66 TGAAATAACGGGGTTGGAGTACCCCCAATTATGAAAAAAGATCAA
* * * * *
2587784 TATTTTAGATATACAGCCGGGGTTAGAGTATCCCCTCGAAAATAACGGGCTTGGAGTATCCCTGA
1 TATTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGA
* *
2587849 TGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAA
66 TGAAATAACGGGGTTGGAGTACCCCCAATTATGAAAA
2587886 TTTGGTGTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
109 33 0.37
110 57 0.63
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (110 bp):
TATTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGA
TGAAATAACGGGGTTGGAGTACCCCCAATTATGAAAAAAGATCAA
Found at i:2587841 original size:28 final size:28
Alignment explanation
Indices: 2587809--2587874 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
2587799 GCCGGGGTTA
2587809 GAGTATCCCCTCGA-AAATAACGGGCTTG
1 GAGTATCCCCT-GAGAAATAACGGGCTTG
*
2587837 GAGTAT-CCCTGATGAAATAACGGGGTTG
1 GAGTATCCCCTGA-GAAATAACGGGCTTG
2587865 GAGTATCCCC
1 GAGTATCCCC
2587875 AATTGTGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.06
27 4 0.12
28 25 0.74
29 3 0.09
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (28 bp):
GAGTATCCCCTGAGAAATAACGGGCTTG
Found at i:2590426 original size:20 final size:20
Alignment explanation
Indices: 2590363--2590436 Score: 82
Period size: 20 Copynumber: 3.7 Consensus size: 20
2590353 GTAAATCCAG
*
2590363 AATGTATCGATACAATG-AGC
1 AATGTATCGATACAATGCA-A
*
2590383 AATCTATCGATACAA--CAA
1 AATGTATCGATACAATGCAA
2590401 GCAATGTATCGATACAATGCAA
1 --AATGTATCGATACAATGCAA
2590423 AATGTATCGATACA
1 AATGTATCGATACA
2590437 TCTGGGTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
19 1 0.02
20 42 0.91
22 3 0.07
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (20 bp):
AATGTATCGATACAATGCAA
Found at i:2592550 original size:18 final size:18
Alignment explanation
Indices: 2592527--2592579 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
2592517 ATATCTTGGT
2592527 TGTATGTGCATGTATATA
1 TGTATGTGCATGTATATA
2592545 TGTATGTGCATGTATATA
1 TGTATGTGCATGTATATA
* *
2592563 TGTATGTACAAGTATAT
1 TGTATGTGCATGTATAT
2592580 GTATGTGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (18 bp):
TGTATGTGCATGTATATA
Found at i:2593045 original size:32 final size:30
Alignment explanation
Indices: 2593009--2593067 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
2592999 GAAATCAAAT
2593009 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
2593041 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
2593068 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:2595950 original size:13 final size:13
Alignment explanation
Indices: 2595932--2595995 Score: 110
Period size: 13 Copynumber: 4.9 Consensus size: 13
2595922 ATAATCCCCC
2595932 TGTATCGATACAG
1 TGTATCGATACAG
*
2595945 TGTATCGATACAT
1 TGTATCGATACAG
2595958 TGTATCGATACAG
1 TGTATCGATACAG
*
2595971 TGTATCGATACAT
1 TGTATCGATACAG
2595984 TGTATCGATACA
1 TGTATCGATACA
2595996 AAGAAAAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2595961 original size:26 final size:26
Alignment explanation
Indices: 2595932--2595995 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
2595922 ATAATCCCCC
2595932 TGTATCGATACAGTGTATCGATACAT
1 TGTATCGATACAGTGTATCGATACAT
2595958 TGTATCGATACAGTGTATCGATACAT
1 TGTATCGATACAGTGTATCGATACAT
2595984 TGTATCGATACA
1 TGTATCGATACA
2595996 AAGAAAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (26 bp):
TGTATCGATACAGTGTATCGATACAT
Found at i:2598085 original size:15 final size:15
Alignment explanation
Indices: 2598065--2598095 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2598055 ATTTCCTTTG
*
2598065 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2598080 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2598095 G
1 G
2598096 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2601863 original size:32 final size:30
Alignment explanation
Indices: 2601827--2601885 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
2601817 GAAATCAAAT
2601827 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
2601859 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
2601886 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:2605967 original size:50 final size:50
Alignment explanation
Indices: 2605864--2605977 Score: 124
Period size: 50 Copynumber: 2.3 Consensus size: 50
2605854 TAAACAATAC
* * ****
2605864 ATGTATCGATACATTCTTTTTTTAACCTAGATGTATCAATACATTTTTCA
1 ATGTATCGATACATTCTTTTTTTAACCTAAATGTATCAATAAATTGAAAA
*
2605914 ATGTATCGATACATTCTGTTTTTT-A-CTCAAATGTATCGATAAATTGAAAA
1 ATGTATCGATACATTCT-TTTTTTAACCT-AAATGTATCAATAAATTGAAAA
*
2605964 ATGTGTCGATACAT
1 ATGTATCGATACAT
2605978 CTAGTTAATT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
49 2 0.04
50 46 0.85
51 6 0.11
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.42
Consensus pattern (50 bp):
ATGTATCGATACATTCTTTTTTTAACCTAAATGTATCAATAAATTGAAAA
Found at i:2606900 original size:20 final size:20
Alignment explanation
Indices: 2606863--2606901 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2606853 TAGCCTTTGA
*
2606863 TCATGCATTTTCACTATGTT
1 TCATGCATTTTCAATATGTT
*
2606883 TCATGCATTTTTAATATGT
1 TCATGCATTTTCAATATGT
2606902 CCGGCATCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.51
Consensus pattern (20 bp):
TCATGCATTTTCAATATGTT
Found at i:2608611 original size:2 final size:2
Alignment explanation
Indices: 2608604--2608628 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2608594 TATATTGATG
2608604 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2608629 TTAGTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2610885 original size:31 final size:31
Alignment explanation
Indices: 2610844--2610902 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
2610834 GTTTCTTTTT
*
2610844 TTATCTTCATTACAGCATC-GATTTCTTCCTG
1 TTATCTTCATTACAGAATCAGA-TTCTTCCTG
* *
2610875 TTATTTTCATTGCAGAATCAGATTCTTC
1 TTATCTTCATTACAGAATCAGATTCTTC
2610903 TTATTGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 22 0.92
32 2 0.08
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (31 bp):
TTATCTTCATTACAGAATCAGATTCTTCCTG
Found at i:2611360 original size:25 final size:24
Alignment explanation
Indices: 2611340--2611430 Score: 78
Period size: 24 Copynumber: 3.7 Consensus size: 24
2611330 AATTATTGTT
2611340 ATTATTTATGTA-TATTTTTATTTA
1 ATTATTTAT-TATTATTTTTATTTA
2611364 ATTATTTATTATTTATTTTTATTT-
1 ATTATTTATTA-TTATTTTTATTTA
* * * *
2611388 ATTTTATTATTTTTGTTTTTAATTA
1 ATTAT-TTATTATTATTTTTATTTA
*
2611413 ATTAATTAATTAATTATT
1 ATT-ATTTATT-ATTATT
2611431 ACTATTTTAC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
23 2 0.04
24 23 0.43
25 23 0.43
26 5 0.09
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
ATTATTTATTATTATTTTTATTTA
Found at i:2611370 original size:8 final size:8
Alignment explanation
Indices: 2611322--2611430 Score: 59
Period size: 8 Copynumber: 13.9 Consensus size: 8
2611312 ATCCCTTTTA
*
2611322 AATTAATT
1 AATTATTT
2611330 AATTATTGT
1 AATTATT-T
*
2611339 TATTATTT
1 AATTATTT
2611347 -ATGTATATT
1 AAT-TAT-TT
*
2611356 -TTTATTT
1 AATTATTT
2611363 AATTATTT
1 AATTATTT
2611371 -ATTATTT
1 AATTATTT
2611378 -ATT-TTT
1 AATTATTT
*
2611384 ATTTATTT
1 AATTATTT
*
2611392 TATTATTT
1 AATTATTT
* *
2611400 -TTGTTTTT
1 AAT-TATTT
*
2611408 AATTAATT
1 AATTATTT
*
2611416 AATTAATT
1 AATTATTT
2611424 AATTATT
1 AATTATT
2611431 ACTATTTTAC
Statistics
Matches: 80, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
6 3 0.04
7 17 0.21
8 49 0.61
9 11 0.14
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (8 bp):
AATTATTT
Found at i:2611373 original size:37 final size:37
Alignment explanation
Indices: 2611324--2611399 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
2611314 CCCTTTTAAA
2611324 TTAATTAATTATT-GTTATTATTTATGTATATTT-TTAT
1 TTAATTAATTATTAGTTATT-TTTATGTAT-TTTATTAT
* * *
2611361 TTAATTATTTATTATTTATTTTTATTTATTTTATTAT
1 TTAATTAATTATTAGTTATTTTTATGTATTTTATTAT
2611398 TT
1 TT
2611400 TTGTTTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 3 0.09
37 26 0.76
38 5 0.15
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (37 bp):
TTAATTAATTATTAGTTATTTTTATGTATTTTATTAT
Found at i:2611387 original size:10 final size:10
Alignment explanation
Indices: 2611341--2611401 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
2611331 ATTATTGTTA
*
2611341 TTATTTATGT
1 TTATTTATTT
*
2611351 ATATTT-TTAT
1 TTATTTATT-T
*
2611361 TTAATTATTT
1 TTATTTATTT
2611371 ATTATTTATTT
1 -TTATTTATTT
2611382 TTATTTA-TT
1 TTATTTATTT
2611391 TTA-TTATTT
1 TTATTTATTT
2611400 TT
1 TT
2611402 GTTTTTAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 3 0.07
9 10 0.24
10 18 0.43
11 11 0.26
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (10 bp):
TTATTTATTT
Done.