Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5794061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 68655 characters in sequence are not A, C, G, or T
File 29 of 38
Found at i:4418680 original size:111 final size:110
Alignment explanation
Indices: 4418484--4418916 Score: 442
Period size: 111 Copynumber: 3.8 Consensus size: 110
4418474 TTCTTTTCAC
* * * *
4418484 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGCACCTTTC-AGT
1 CCTTTCAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGT
* *
4418547 CCTCAAAGAGCAGGCTGCCTTTCAAAGCCCACACAAGTTGCTGGCA
65 CCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** *
4418593 TTTTTTTAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTCCTAG
1 -CCTTTCAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CTAG
4418657 TCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
64 TCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
4418704 CCTTTCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTTTAAAGACCACTCAAGTTGGTGGCACCTT
1 CCTTTCAGTCCTCAAAGAGCAAGATG------CCTTTTAAAGCCCACACAAGTTGGTGGCACTTT
* *
4418769 CTAGT-CTCAAAGAGTAGGAAGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCA
60 CTAGTCCTCAAAGAGCAGG-A---TGC-CTTT-CAAAGCCCACACAAGTTGGTGGCA
* ** **
4418825 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACTTT
1 CCTTTCAGTCCTCAAAGAGCA--AGA---TGCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTT
* * *
4418890 TTAGTCCCCAAAGAACAGGATGCCTTT
60 CTAGTCCTCAAAGAGCAGGATGCCTTT
4418917 TCCTTTTCTC
Statistics
Matches: 269, Mismatches: 31, Indels: 39
0.79 0.09 0.12
Matches are distributed among these distances:
109 3 0.01
110 26 0.10
111 92 0.34
115 12 0.04
116 33 0.12
117 6 0.02
118 2 0.01
119 2 0.01
120 9 0.03
121 72 0.27
122 10 0.04
123 1 0.00
126 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (110 bp):
CCTTTCAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTC
CTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:4418879 original size:121 final size:120
Alignment explanation
Indices: 4418525--4418895 Score: 343
Period size: 121 Copynumber: 3.2 Consensus size: 120
4418515 AAAGCCCAAA
* *
4418525 CAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCA-G--GC-TGC-CTTTCAAAGCCCACACAAG
1 CAAGTTGGTGGCACCTTCT-AGT-CTCAAAGAGTAGGAAGCTTTCTCTTTCAAAGCCCACACAAG
* ** * * * * *
4418584 TTGCTGGCATTTTTTTAGTCCTCAAAGAGCAAG-A----T-GCCTTTTAAAGCCCACA
64 TTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGAACCTTTCTCCTTTTAAAGACCACT
* * *
4418636 CAAGTTGGTGGCA-TTTCCTAGTCCTCAAAGAGCAGG-A---TGC-CTTTCAAAGCCCACACAAG
1 CAAGTTGGTGGCACCTT-CTAGT-CTCAAAGAGTAGGAAGCTTTCTCTTTCAAAGCCCACACAAG
**
4418695 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTTTAAAGACCACT
64 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAACCTTTCTCCTTTTAAAGACCACT
4418752 CAAGTTGGTGGCACCTTCTAGTCTCAAAGAGTAGGAAGCTTTCTCTTTGCAAAGCCCACACAAGT
1 CAAGTTGGTGGCACCTTCTAGTCTCAAAGAGTAGGAAGCTTTCTCTTT-CAAAGCCCACACAAGT
*
4418817 TGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTT-T-CTTTTCAAAGCCCACAT
65 TGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-ACCTTTCTCCTTTT-AAAGACCAC-T
* * *
4418874 -GAGTTGGTGGCACTTTTTAGTC
1 CAAGTTGGTGGCACCTTCTAGTC
4418896 CCCAAAGAAC
Statistics
Matches: 221, Mismatches: 19, Indels: 30
0.82 0.07 0.11
Matches are distributed among these distances:
110 21 0.10
111 58 0.26
112 2 0.01
115 13 0.06
116 33 0.15
117 2 0.01
119 2 0.01
120 9 0.04
121 76 0.34
122 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (120 bp):
CAAGTTGGTGGCACCTTCTAGTCTCAAAGAGTAGGAAGCTTTCTCTTTCAAAGCCCACACAAGTT
GGTGGCACCTTTCAGTCCTCAAAGAGCAGGAACCTTTCTCCTTTTAAAGACCACT
Found at i:4418916 original size:61 final size:60
Alignment explanation
Indices: 4418481--4418924 Score: 423
Period size: 55 Copynumber: 7.7 Consensus size: 60
4418471 TTTTTCTTTT
* * *
4418481 CACCCTTTAGTCCTCAAAGAGCAGGACGC----C-TTTCAAAGCCCAAACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * *
4418536 CACCTTTCAGTCCTCAAAGAGCAGGCTGC----C-TTTCAAAGCCCACACAAGTTGCTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
** *
4418591 CATTTTTTTAGTCCTCAAAGAGCAAGATGC----CTTTT-AAAGCCCACACAAGTTGGTGG
1 CA-CCTTTTAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
4418647 CA--TTTCCTAGTCCTCAAAGAGCAGGATGC----C-TTTCAAAGCCCACACAAGTTGGTGG
1 CACCTTT--TAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * *
4418702 CACCTTTCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTTT-AAAGACCACTCAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGATGCTTT-T-CTTTTCAAAGCCCACACAAGTTGGTGG
* * * *
4418763 CACCTTCTAGT-CTCAAAGAGTAGGAAGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGATGCTTT-TCTTTTCAAAGCCCACACAAGTTGGTGG
* ** **
4418823 CACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACATGAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGA-TGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
* * *
4418884 CACTTTTTAGTCCCCAAAGAACAGGATGCCTTTTCCTTTTC
1 CACCTTTTAGTCCTCAAAGAGCAGGATG-CTTTT-CTTTTC
4418925 TCCTTTATCC
Statistics
Matches: 334, Mismatches: 36, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
53 3 0.01
54 3 0.01
55 117 0.35
56 45 0.13
57 6 0.02
59 4 0.01
60 48 0.14
61 94 0.28
62 14 0.04
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (60 bp):
CACCTTTTAGTCCTCAAAGAGCAGGATGCTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
Found at i:4419608 original size:20 final size:20
Alignment explanation
Indices: 4419583--4419657 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
4419573 TTTTCACAAT
4419583 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGCTCA
*
4419603 TTGTATCGATACATT-TTGCA
1 TTGTATCGATACATTGCT-CA
*
4419623 TTGTATCGATCCATTGCTCA
1 TTGTATCGATACATTGCTCA
*
4419643 TTATATCGATACATT
1 TTGTATCGATACATT
4419658 CTATCAATAC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGCTCA
Found at i:4422139 original size:51 final size:51
Alignment explanation
Indices: 4422004--4422144 Score: 140
Period size: 51 Copynumber: 2.8 Consensus size: 51
4421994 CGGTTTCATG
** **
4422004 TCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCCAATTTTATT
1 TCCAAAACATCAATTTTTCACAATTAGGGATACTCCAACTCCAATTTTATT
* * * ** * * * *
4422055 TCTAAAGCATCGATTTACCGCAA-TCGGGAATACTCCAACTTCGATTTTATT
1 TCCAAAACATCAATTTTTCACAATTAGGG-ATACTCCAACTCCAATTTTATT
*
4422106 TCCAAAACACCAATTTTTCACAATTAGGGATACTCCAAC
1 TCCAAAACATCAATTTTTCACAATTAGGGATACTCCAAC
4422145 CCCGTTATTT
Statistics
Matches: 69, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
50 3 0.04
51 62 0.90
52 4 0.06
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (51 bp):
TCCAAAACATCAATTTTTCACAATTAGGGATACTCCAACTCCAATTTTATT
Found at i:4422164 original size:28 final size:27
Alignment explanation
Indices: 4422131--4422204 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 27
4422121 TTTCACAATT
4422131 AGGGATACTCCAACCCCGTTATTTCGTCG
1 AGGGATACTCCAACCCCGTTATTTC-T-G
*
4422160 -GGGATACTCTAACCCCGTTATTTCTG
1 AGGGATACTCCAACCCCGTTATTTCTG
4422186 AGGAGATACTCCAACCCCG
1 AGG-GATACTCCAACCCCG
4422205 GCTTTATATC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
26 1 0.02
27 3 0.07
28 37 0.90
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (27 bp):
AGGGATACTCCAACCCCGTTATTTCTG
Found at i:4422286 original size:28 final size:26
Alignment explanation
Indices: 4422239--4422314 Score: 89
Period size: 28 Copynumber: 2.8 Consensus size: 26
4422229 TTTTTCATAA
* *
4422239 TCGGGGGTACTTCAACCCCGTTATTTCT
1 TCGGGGATACTCCAACCCCGTTA-TT-T
*
4422267 TCGGGGATACTCCAATCCCGTTATTT
1 TCGGGGATACTCCAACCCCGTTATTT
4422293 TCGAGGGCATACTCCAACCCCG
1 TCG-GGG-ATACTCCAACCCCG
4422315 ATTTTATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 4 0.10
27 5 0.12
28 33 0.79
ACGTcount: A:0.18, C:0.32, G:0.21, T:0.29
Consensus pattern (26 bp):
TCGGGGATACTCCAACCCCGTTATTT
Found at i:4422359 original size:51 final size:51
Alignment explanation
Indices: 4422296--4422467 Score: 211
Period size: 51 Copynumber: 3.4 Consensus size: 51
4422286 GTTATTTTCG
*
4422296 AGGGCATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTCCACAATC
1 AGGG-ATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
* * *
4422348 AGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAA-TTTCTTACAATC
1 AGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTC-CACAATC
* *** * * * *
4422399 GGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTCCACAATT
1 AGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
4422450 AGGGATACTCCAACCCCG
1 AGGGATACTCCAACCCCG
4422468 TTATTTTCGA
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 4 0.04
51 90 0.88
52 8 0.08
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (51 bp):
AGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC
Found at i:4422375 original size:110 final size:107
Alignment explanation
Indices: 4422084--4422361 Score: 326
Period size: 110 Copynumber: 2.6 Consensus size: 107
4422074 GCAATCGGGA
** * * *
4422084 ATACTCCAACTTCGATTTTATTTCCAAAACACCAATTTTTCACAATTAGGGATACTCCAACCCCG
1 ATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCAGGGATACTCCAACCCCG
*
4422149 TTATTTCGTCGGGGATACTCTAACCCCGTTATTTCTGAGGAG
66 TTATTTCGTCGGGGATACTCCAACCCCGTTATTTCTGAGGAG
** * ** * * * * *
4422191 ATACTCCAACCCCGGCTTTATATCTAAAATATTGATCTTTTTTCATAATCGGGGGTACTTCAACC
1 ATACTCCAACCCCGATTTTATTTCTAAAATA-CCA--ATTTTTCACAATCAGGGATACTCCAACC
* *
4422256 CCGTTATTTCTTCGGGGATACTCCAATCCCGTTATTT-TCGAGG-G
63 CCGTTATTTCGTCGGGGATACTCCAACCCCGTTATTTCT-GAGGAG
*
4422300 CATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTCCACAATCAGGGATACTCCAAC
1 -ATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCAGGGATACTCCAAC
4422362 TCCGATTTTA
Statistics
Matches: 137, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
107 45 0.33
108 1 0.01
109 3 0.02
110 88 0.64
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (107 bp):
ATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCAGGGATACTCCAACCCCG
TTATTTCGTCGGGGATACTCCAACCCCGTTATTTCTGAGGAG
Found at i:4429487 original size:28 final size:28
Alignment explanation
Indices: 4429427--4429487 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
4429417 AGGGTTGGAA
* **
4429427 TATCCTTTCAAAAATAGCAGGGCTGGAG
1 TATCCTTTCAAAAATAACAGGGCTAAAG
* **
4429455 AATCCTTTCAAAAATAATGGGGCTAAAG
1 TATCCTTTCAAAAATAACAGGGCTAAAG
4429483 TATCC
1 TATCC
4429488 CCGATTGTGA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (28 bp):
TATCCTTTCAAAAATAACAGGGCTAAAG
Found at i:4429594 original size:79 final size:79
Alignment explanation
Indices: 4429456--4430357 Score: 445
Period size: 79 Copynumber: 11.4 Consensus size: 79
4429446 GGGCTGGAGA
* * * ** * *
4429456 ATCCTTTCAAAAATAATGGGGCTAAAGTATCCCCGATTGTGAAAAATCGATGT-TCTAGAAATAA
1 ATCCTTTCGAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGATATCT-TAGAAATAA
* *
4429520 AATCGAGGTTGGAAT
65 AATCGAGGTTAGAGT
* * * * *
4429535 ATCCTTTCGAAAATAATAGGGTTAGAGTATCTCTGATTATGGAAAATCGGTATCTTAGAAATAAA
1 ATCCTTTCGAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGATATCTTAGAAATAAA
4429600 ATCGAGGTTAGAGT
66 ATCGAGGTTAGAGT
** * * * * *
4429614 ATCCCCTCTG-AAATAACAAGGTTGGCGTATCCCCGATTAT-AAAAAACTGATAT-TTTGAAAAT
1 ATCCTTTC-GAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATC-GATATCTTAG-AAAT
4429676 AAAATCG-GAGTTAGAGT
63 AAAATCGAG-GTTAGAGT
** * * *
4429693 ATCCCCTC-ATAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGATATTTTAGAAATAA
1 ATCCTTTCGA-AAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGATATCTTAGAAATAA
* *
4429757 AATCAAGGTTAGAGC
65 AATCGAGGTTAGAGT
** * * * *
4429772 AT-CTCTTCGAAAATAACGGGGTTGGAGTATCTCCGATTATGAAAAAT-TAGTGT-TTTGAAAAT
1 ATCCT-TTCGAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGA-TATCTTAG-AAAT
4429834 AAAACTC--GGTT-GAAGT
63 AAAA-TCGAGGTTAG-AGT
* * * ** * * *
4429850 ATCCCCTT--ACAATTAA-CGAGGTTGGAGTATCCCTAATTATGAAAAAAACTGATGTTTTAGAA
1 AT-CCTTTCGA-AAATAATAG-GGTTGGAGTATCCCCGATTATG-AAAAATC-GATATCTTAGAA
* *
4429912 ATAAAATCAAGGTTGGAGT
61 ATAAAATCGAGGTTAGAGT
* * * * * * * *
4429931 ATCCTCTAGGAAATAATATGGTTGGAGTATCCCCGATTGTGAAAAAT-TAGTGT-TTTGAAAATA
1 ATCCTTTCGAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGA-TATCTTAG-AAATA
* *
4429994 AAA-CCAGGGTTGGAGT
64 AAATCGA-GGTTAGAGT
* * * * * * *
4430010 AT-CTCCTC-AGAAAGAA-CGAGGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTGGAAA
1 ATCCT-TTCGA-AAATAATAG-GGTTGGAGTATCCCCGATTATGAAAAATC-GATATCTTAGAAA
* *
4430072 TAAAATCGGGGTTGGAGT
62 TAAAATCGAGGTTAGAGT
* * * * * * * *
4430090 ATTCC-CTAGGAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTGGAAATAA
1 A-TCCTTTCGAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGATATCTTAGAAATAA
* *
4430154 AATCGGGGTTGGAGT
65 AATCGAGGTTAGAGT
** * * * * * * * *
4430169 ATCCCCTC-AGAAATAATGGGGTTGGAGTATCCCCGATTGTTAAAAATTGGTGTTTTGGAAATAA
1 ATCCTTTCGA-AAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGATATCTTAGAAATAA
* * *
4430233 AA-CCAGGGCTGGAGT
65 AATCGA-GGTTAGAGT
** * * * * * * *
4430248 ATCCCCTCAAAAATAA-CGAGGTTGGAGTATCCTCGATTATGAAAAAT-TAGTGTTTTGGAAATA
1 ATCCTTTCGAAAATAATAG-GGTTGGAGTATCCCCGATTATGAAAAATCGA-TATCTTAGAAATA
*
4430311 AAATC-AGGGTTGGAGT
64 AAATCGA-GGTTAGAGT
* ** * *
4430327 TTCCCCTCAAAAATAACAGGGTTGGAGTATC
1 ATCCTTTCGAAAATAATAGGGTTGGAGTATC
4430358 TCCGCGGAAA
Statistics
Matches: 669, Mismatches: 102, Indels: 104
0.76 0.12 0.12
Matches are distributed among these distances:
77 3 0.00
78 59 0.09
79 470 0.70
80 91 0.14
81 44 0.07
82 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (79 bp):
ATCCTTTCGAAAATAATAGGGTTGGAGTATCCCCGATTATGAAAAATCGATATCTTAGAAATAAA
ATCGAGGTTAGAGT
Found at i:4429954 original size:159 final size:158
Alignment explanation
Indices: 4429481--4430357 Score: 844
Period size: 158 Copynumber: 5.5 Consensus size: 158
4429471 ATGGGGCTAA
* * * * **
4429481 AGTATCCCCGATTGTGAAAAA-TCGATGTTCT-AGAAATAAAATCGAGGTTGGAATATCCTTTC-
1 AGTATCCCCGATTATGAAAAATTAG-TGTTTTGA-AAATAAAATCG-GGTTGGAGTATCCCCTCA
* * * * * * * * * *
4429543 GAAAATAA-TAGGGTTAGAGTATCTCTGATTATGGAAAATC-GGTATCTTAGAAATAAAATCGAG
63 G-AAATAACGA-GGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTAGAAATAAAATCAAG
* ** *
4429606 GTTAGAGTATCCCCTCTGAAATAACAAGGTTGG
126 GTTGGAGTATCCCCTAGGAAATAACAGGGTTGG
* * * * * *
4429639 CGTATCCCCGATTATAAAAAACT-GATATTTTGAAAATAAAATCGGAGTTAGAGTATCCCCTCAT
1 AGTATCCCCGATTATGAAAAATTAG-TGTTTTGAAAATAAAATCGG-GTTGGAGTATCCCCTCAG
* * * *
4429703 AAATAA-TAGGGTTGGAGTATCCCCGATTGTG-AAAAATTGATATTTTAGAAATAAAATCAAGGT
64 AAATAACGA-GGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTAGAAATAAAATCAAGGT
* * * * * * *
4429766 TAGAGCATCTCTTCGAAAATAACGGGGTTGG
128 TGGAGTATCCCCTAGGAAATAACAGGGTTGG
* * * *
4429797 AGTATCTCCGATTATGAAAAATTAGTGTTTTGAAAATAAAACTC-GGTTGAAGTATCCCCTTACA
1 AGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAA-TCGGGTTGGAGTATCCCCTCAGA
* **
4429861 ATTAACGAGGTTGGAGTATCCCTAATTATGAAAAAAACTGATGTTTTAGAAATAAAATCAAGGTT
65 AATAACGAGGTTGGAGTATCCCCGATTATG-AAAAAACTGATGTTTTAGAAATAAAATCAAGGTT
* * *
4429926 GGAGTATCCTCTAGGAAATAATATGGTTGG
129 GGAGTATCCCCTAGGAAATAACAGGGTTGG
* * *
4429956 AGTATCCCCGATTGTGAAAAATTAGTGTTTTGAAAATAAAACCAGGGTTGGAGTATCTCCTCAGA
1 AGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATC-GGGTTGGAGTATCCCCTCAGA
* * **
4430021 AAGAACGAGGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTGGAAATAAAATCGGGGTTG
65 AATAACGAGGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTAGAAATAAAATCAAGGTTG
* *
4430086 GAGTATTCCCTAGGAAATAATAGGGTTGG
130 GAGTATCCCCTAGGAAATAACAGGGTTGG
* * * *
4430115 AGTATCCCCGATTGTGAAAAATTGGTATTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAGA
1 AGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATC-GGGTTGGAGTATCCCCTCAGA
* * * * * * * * * *
4430180 AATAATGGGGTTGGAGTATCCCCGATTGT-TAAAAATTGGTGTTTTGGAAATAAAACCAGGGCTG
65 AATAACGAGGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTAGAAATAAAATCAAGGTTG
*
4430244 GAGTATCCCCTCA-AAAATAAC-GAGGTTGG
130 GAGTATCCCCT-AGGAAATAACAG-GGTTGG
* * * *
4430273 AGTATCCTCGATTATGAAAAATTAGTGTTTTGGAAATAAAATCAGGGTTGGAGTTTCCCCTCAAA
1 AGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATC-GGGTTGGAGTATCCCCTCAGA
4430338 AATAAC-AGGGTTGGAGTATC
65 AATAACGA-GGTTGGAGTATC
4430358 TCCGCGGAAA
Statistics
Matches: 607, Mismatches: 97, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
157 44 0.07
158 283 0.47
159 238 0.39
160 42 0.07
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (158 bp):
AGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATCGGGTTGGAGTATCCCCTCAGAA
ATAACGAGGTTGGAGTATCCCCGATTATGAAAAAACTGATGTTTTAGAAATAAAATCAAGGTTGG
AGTATCCCCTAGGAAATAACAGGGTTGG
Found at i:4429976 original size:238 final size:234
Alignment explanation
Indices: 4429481--4430357 Score: 902
Period size: 238 Copynumber: 3.7 Consensus size: 234
4429471 ATGGGGCTAA
* * * * * *
4429481 AGTATCCCCGATTGTGAAAAATCGATGTTCTAGAAATAAAATCGAGGTTGGAATATC-CTTTCGA
1 AGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAAGGTTGGAGTATCTC-CTCGA
* * * * ** * *
4429545 AAATAA-TAGGGTTAGAGTATCTCTGATTATGGAAAATCGGTATCTT-AGAAATAAAATCGAGGT
65 AAATAACGA-GGTTGGAGTATCTCCGATTATGAAAAATTAGTGTTTTGA-AAATAAAATCG-GGT
* * *
4429608 T-AGAGTATCCCCTCTGAAATAACAAGGTTGGCGTATCCCCGATTAT-AAAAAACTGATATTTTG
127 TGA-AGTATCCCCT-TAAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAAACTGATATTTTG
* *
4429671 AAAATAAAATCGGAGTTAGAGTATCCCCTCATAAATAATAGGGTTGG
190 -AAATAAAATCGG-GTTGGAGTATCCCCTCAGAAATAATAGGGTTGG
* * * * *
4429718 AGTATCCCCGATTGTGAAAAATTGATATTTTAGAAATAAAATCAAGGTTAGAGCATCTCTTCGAA
1 AGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAAGGTTGGAGTATCTCCTCGAA
*
4429783 AATAACGGGGTTGGAGTATCTCCGATTATGAAAAATTAGTGTTTTGAAAATAAAACTC-GGTTGA
66 AATAACGAGGTTGGAGTATCTCCGATTATGAAAAATTAGTGTTTTGAAAATAAAA-TCGGGTTGA
* ** *
4429847 AGTATCCCCTTACAATTAAC-GAGGTTGGAGTATCCCTAATTATGAAAAAAACTGATGTTTTAGA
130 AGTATCCCCTTA-AAATAACAG-GGTTGGAGTATCCCCGATTATG-AAAAAACTGATATTTT-GA
* * *
4429911 AATAAAATCAAGGTTGGAGTATCCTCT-AGGAAATAATATGGTTGG
191 AATAAAATC-GGGTTGGAGTATCCCCTCA-GAAATAATAGGGTTGG
*
4429956 AGTATCCCCGATTGTGAAAAATT-AGTGTTTT-GAAAATAAAACCAGGGTTGGAGTATCTCCTC-
1 AGTATCCCCGATTGTGAAAAATTGA-TGTTTTAG-AAATAAAACCAAGGTTGGAGTATCTCCTCG
* * * *
4430018 AGAAAGAACGAGGTTGGAGTATCCCCGATTATGAAAAAACT-GATGTTTTGGAAATAAAATCGGG
64 A-AAATAACGAGGTTGGAGTATCTCCGATTATG-AAAAATTAG-TGTTTTGAAAATAAAATC-GG
* * * * * *
4430082 GTTGGAGTATTCCC-TAGGAAATAATAGGGTTGGAGTATCCCCGATTGTG-AAAAATTGGTATTT
125 GTTGAAGTATCCCCTTA--AAATAACAGGGTTGGAGTATCCCCGATTATGAAAAAACTGATATTT
*
4430145 TGGAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTGG
188 T-GAAATAAAATC-GGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGG
* * * * * * *
4430194 AGTATCCCCGATTGTTAAAAATTGGTGTTTTGGAAATAAAACCAGGGCTGGAGTATCCCCTCAAA
1 AGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAAGGTTGGAGTATCTCCTCGAA
*
4430259 AATAACGAGGTTGGAGTATC-CTCGATTATGAAAAATTAGTGTTTTGGAAATAAAATCAGGGTTG
66 AATAACGAGGTTGGAGTATCTC-CGATTATGAAAAATTAGTGTTTTGAAAATAAAATC-GGGTTG
* * *
4430323 GAGTTTCCCCTCAAAAATAACAGGGTTGGAGTATC
129 AAGTATCCCCT-TAAAATAACAGGGTTGGAGTATC
4430358 TCCGCGGAAA
Statistics
Matches: 544, Mismatches: 67, Indels: 58
0.81 0.10 0.09
Matches are distributed among these distances:
235 1 0.00
236 38 0.07
237 163 0.30
238 275 0.51
239 29 0.05
240 37 0.07
241 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (234 bp):
AGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAAGGTTGGAGTATCTCCTCGAA
AATAACGAGGTTGGAGTATCTCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATCGGGTTGAA
GTATCCCCTTAAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAAACTGATATTTTGAAATAA
AATCGGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGG
Found at i:4432774 original size:20 final size:20
Alignment explanation
Indices: 4432749--4432841 Score: 100
Period size: 20 Copynumber: 4.7 Consensus size: 20
4432739 AAATGCTTGG
4432749 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
4432769 ATGTATCGATACATCT--AGA
1 ATGTATCGATACAT-TGAAAA
* * *
4432788 TTGTATCGATACAATGAATA
1 ATGTATCGATACATTGAAAA
* *
4432808 ATGTATCGATACAATGAACA
1 ATGTATCGATACATTGAAAA
*
4432828 ATGTATTGATACAT
1 ATGTATCGATACAT
4432842 CTGGGTAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
18 1 0.02
19 14 0.23
20 46 0.74
21 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:4439683 original size:13 final size:13
Alignment explanation
Indices: 4439665--4439689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4439655 CAAAGATCAG
4439665 TGTATCGATACAA
1 TGTATCGATACAA
4439678 TGTATCGATACA
1 TGTATCGATACA
4439690 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4440067 original size:32 final size:33
Alignment explanation
Indices: 4440012--4440080 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
4440002 TTCAACGATT
*
4440012 TGTATCGATACATAAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
4440045 TGTATCGATACAT-AAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
4440077 TGTA
1 TGTA
4440081 AGCTATTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 22 0.63
33 13 0.37
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:4440136 original size:13 final size:13
Alignment explanation
Indices: 4440118--4440142 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4440108 ATTACTCAAA
4440118 TGTATCGATACAT
1 TGTATCGATACAT
4440131 TGTATCGATACA
1 TGTATCGATACA
4440143 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4440193 original size:52 final size:52
Alignment explanation
Indices: 4440151--4440281 Score: 226
Period size: 52 Copynumber: 2.5 Consensus size: 52
4440141 CACTGATCTT
* *
4440151 TGTATCGATACTTGAAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
* *
4440203 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
4440255 TGTATCGATACATGCAGGCAAATTTTC
1 TGTATCGATACATGCAGGCAAATTTTC
4440282 ATATTTCGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
Found at i:4442523 original size:28 final size:28
Alignment explanation
Indices: 4442483--4443046 Score: 590
Period size: 28 Copynumber: 19.5 Consensus size: 28
4442473 CTCTCCCACA
*
4442483 TTTCGAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
4442511 TTTCGAAGCCCACAAGTTAGTGGCACCA
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * * * *
4442539 TTGCGAAGCCCACAATTTAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
4442567 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
*
4442595 TTTTAAAGCCCACACAAGTCAGTGGCACTCC
1 TTTCAAAG-CC-CACAAGTCAGTGGCAC-CC
* * *
4442626 TTTTAAAGCTCACGCAAGTCAGTGGTC-CCT
1 TTTCAAAGC-C-CACAAGTCAGTGG-CACCC
* * *
4442656 TTTCAAAGCCCACGAGTTAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
**
4442684 TTTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTTCAAAGCCCACAAGTCAGTGGCA-CCC
*
4442713 TTTCAAAGCCCACGCAAGTTAGTGGCACCC
1 TTTCAAAGCCCA--CAAGTCAGTGGCACCC
* * *
4442743 TTTTAAAGCCCACAAGTTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
4442772 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
*
4442800 TTTCAAAGCCCACAAGTCAGTGCCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
4442828 TTTTCAAAGCCCACGCAAGTCAGTGGCACCC
1 -TTTCAAAGCCCA--CAAGTCAGTGGCACCC
* * *
4442859 TTTCGAAGCCCACAAGTCAATGGCACCA
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * * * *
4442887 TTGCGAAGCCCATAATTCAGTGGCACTC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
4442915 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
4442943 TTTTAAAGCCCACACAAGTCATTGGCATTCC
1 TTTCAAAG-CC-CACAAGTCAGTGGCA-CCC
4442974 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * * ** *
4443002 TTTTAAAACCCACGCAAGTCGGTAACACTCT
1 TTTCAAAGCCCA--CAAGTCAGTGGCAC-CC
4443033 TTTCAAAGCCCACA
1 TTTCAAAGCCCACA
4443047 TGTGTCAGTG
Statistics
Matches: 456, Mismatches: 61, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.00
28 234 0.51
29 72 0.16
30 76 0.17
31 72 0.16
32 1 0.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCC
Found at i:4442733 original size:59 final size:58
Alignment explanation
Indices: 4442483--4443046 Score: 628
Period size: 59 Copynumber: 9.7 Consensus size: 58
4442473 CTCTCCCACA
* * * * *
4442483 TTTCGAAGCCCA-CAAGTCAGTGGCACCCTTTCGAAGCCCACAAGTTAGTGGCA-CCA
1 TTTCAAAGCCCACCAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
4442539 TTGCGAAGCCCA-CAATTTAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACCAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
4442596 TTT-AAAGCCCACACAAGTCAGTGGCACTCCTTTTAAAGCTCACGCAAGTCAGTGG-TCCCT
1 TTTCAAAGCCCAC-CAAGTCAGTGGCACT-CTTTCAAAGC-C-CACAAGTCAGTGGCACCCT
* * * *
4442656 TTTCAAAGCCCA-CGAGTTAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTTCAAAGCCCACCAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
4442713 TTTCAAAGCCCACGCAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACTCT
1 TTTCAAAGCCCAC-CAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
4442772 TTTCAAAGCCCA-CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGCCACCCT
1 TTTCAAAGCCCACCAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
4442829 TTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTCGAAGCCCACAAGTCAATGGCA-CCA
1 TTTCAAAGCCCAC-CAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
4442887 TTGCGAAGCCCA-TAATTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACCAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
4442944 TTT-AAAGCCCACACAAGTCATTGGCATTCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCAC-CAAGTCAGTGGCACT-CTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * **
4443003 TTT-AAAACCCACGCAAGTCGGTAACACTCTTTTCAAAGCCCACA
1 TTTCAAAGCCCAC-CAAGTCAGTGGCACTC-TTTCAAAGCCCACA
4443047 TGTGTCAGTG
Statistics
Matches: 433, Mismatches: 58, Indels: 31
0.83 0.11 0.06
Matches are distributed among these distances:
56 109 0.25
57 75 0.17
58 46 0.11
59 175 0.40
60 8 0.02
61 20 0.05
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (58 bp):
TTTCAAAGCCCACCAAGTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:4443681 original size:20 final size:20
Alignment explanation
Indices: 4443653--4443727 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
4443643 TTTTACCTTG
4443653 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
4443673 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
4443693 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
4443713 ATGTATCGATACATT
1 ATGTATCGATACATT
4443728 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:4443720 original size:40 final size:39
Alignment explanation
Indices: 4443653--4443730 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
4443643 TTTTACCTTG
* *
4443653 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
4443693 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
4443731 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:4444677 original size:22 final size:22
Alignment explanation
Indices: 4444643--4444696 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
4444633 AGCCTTTGAC
4444643 CATGCA-TTTTTTATTATGTTT
1 CATGCATTTTTTTATTATGTTT
4444664 CATGCATTTTTTTATTATGTTT
1 CATGCATTTTTTTATTATGTTT
4444686 CATGCATTTTT
1 CATGCATTTTT
4444697 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.19, C:0.11, G:0.09, T:0.61
Consensus pattern (22 bp):
CATGCATTTTTTTATTATGTTT
Found at i:4447624 original size:19 final size:19
Alignment explanation
Indices: 4447600--4447648 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
4447590 CGTTACGACA
4447600 GTATCGATACAAAACTTAT
1 GTATCGATACAAAACTTAT
* *
4447619 GTATCGGTACAACACTTAT
1 GTATCGATACAAAACTTAT
*
4447638 GTATCAATACA
1 GTATCGATACA
4447649 TTGTATCGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (19 bp):
GTATCGATACAAAACTTAT
Found at i:4448638 original size:43 final size:43
Alignment explanation
Indices: 4448572--4449172 Score: 574
Period size: 43 Copynumber: 13.1 Consensus size: 43
4448562 CAAAGATGAA
* * *
4448572 AAAGGCGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * * *
4448615 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCATAAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC-T--T
*
4448661 AGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
4448708 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC-T-----T
*
4448757 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * * *
4448800 AAGGGTG-TAGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCA-ATATGCTGATTCAAGGCCAGCGACATTGGAC-T-----T
*
4448849 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
4448892 AAAGGTGCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC-T-----T
*
4448941 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
** * *
4448984 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* *
4449027 AAAGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT
1 ------AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
4449076 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGTACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
*
4449119 AAAGACCAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
4449168 AAAGG
1 AAAGG
4449173 AAGATGCCAC
Statistics
Matches: 463, Mismatches: 56, Indels: 78
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.00
43 223 0.48
44 5 0.01
45 1 0.00
46 2 0.00
47 3 0.01
48 3 0.01
49 190 0.41
50 35 0.08
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
Found at i:4448816 original size:92 final size:92
Alignment explanation
Indices: 4448526--4449172 Score: 1010
Period size: 92 Copynumber: 7.0 Consensus size: 92
4448516 TGACAAAGAC
* * * * *
4448526 GCCAATATGTTGATTCAAGGCCAG-TGATATTGGACTCAAAGATGAAAAAGGCGCCAATATGCTG
1 GCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTG
*
4448590 GTTCAAGGCCAGCGATATTGGACTTAAAGGT
62 ATTCAAGGCCAGCGATATTGGACTTAAAGGT
* * * * *
4448621 GCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCATAAAAGATGAGGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-TTAAAGATAAAGGTGCCAATATGCTGATT
4448686 CAAGGCCAGCGATATTGGACTTAAAGGT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
*
4448714 GCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
*
4448779 AAGGCCAGCGATATTGGACTTAAGGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
*
4448806 G-TAGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
1 GCCA-ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATT
4448870 CAAGGCCAGCGATATTGGACTTAAAGGT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
*
4448898 GCCGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
**
4448963 AAGGCCAGCGATATTGGACTTGGAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
*
4448990 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACAAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
*
4449055 AAGGCTAGCGATATTGGACTTAAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
* **
4449082 GCCAATGTGCTGATTCAAGGCCAGCTACATTGTACTTAAAGACCAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
* *
4449147 AAGGCCAGCTACATTGGACTTAAAGG
66 AAGGCCAGCGATATTGGACTTAAAGG
4449173 AAGATGCCAC
Statistics
Matches: 514, Mismatches: 34, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
91 1 0.00
92 400 0.78
93 77 0.15
95 29 0.06
96 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAAGGT
Found at i:4449101 original size:21 final size:20
Alignment explanation
Indices: 4449034--4449101 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
4449024 CTTAAAGACA
4449034 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
* *
4449055 AAGGCTAGCGATATTG--GACTTA
1 AAGG-T-GCCA-ATTGCTGA-TTC
4449077 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
4449098 AAGG
1 AAGG
4449102 CCAGCTACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (20 bp):
AAGGTGCCAATTGCTGATTC
Found at i:4449254 original size:32 final size:32
Alignment explanation
Indices: 4449177--4449428 Score: 302
Period size: 32 Copynumber: 7.9 Consensus size: 32
4449167 TAAAGGAAGA
* *
4449177 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGC-TTTGAAAAAGGT
* **
4449210 TGCCACCGACTTGTGTGGGCTTT-AGAGGGGAT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAAGG-T
* *
4449242 TGCCACCAACTTGTGTGGGCTTTAGAGAAAGGT
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAAGGT
*
4449275 TGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAAGGT
4449307 TGCCACCGACTTGTGTGGGCTTTGGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAAGGT
*
4449340 TGCCACCGACTTGTGCGGGCTTTG-AAAAGTGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAAAG-GT
4449372 TGCCACCGACTTGTGTGGGCTTTTG---AAGGT
1 TGCCACCGACTTGTGTGGGC-TTTGAAAAAGGT
*
4449402 TGCCACTGAC-T-TGTGGGCTTTTGAAAA
1 TGCCACCGACTTGTGTGGGC-TTTGAAAA
4449429 GGAGAAAGAT
Statistics
Matches: 195, Mismatches: 15, Indels: 20
0.85 0.07 0.09
Matches are distributed among these distances:
28 12 0.06
29 1 0.01
30 11 0.06
31 12 0.06
32 78 0.40
33 76 0.39
34 5 0.03
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.29
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTGAAAAAGGT
Found at i:4449281 original size:65 final size:64
Alignment explanation
Indices: 4449177--4449430 Score: 331
Period size: 65 Copynumber: 4.0 Consensus size: 64
4449167 TAAAGGAAGA
* *
4449177 TGCCACCAACTTGTGTGGGCTTTTGA-AGAAGGTTGCCACCGACTTGTGTGGGCTTT-AGAGGGG
1 TGCCACCAACTTGTGTGGGC-TTTGAGA-AAGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGG
4449240 AT
64 -T
4449242 TGCCACCAACTTGTGTGGGCTTTAGAGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTT-GAGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
* * * *
4449307 TGCCACCGACTTGTGTGGGCTTTGGAAAAAGGTTGCCACCGACTTGTGCGGGCTTTGAAAAGTGT
1 TGCCACCAACTTGTGTGGGCTTT-GAGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
* * *
4449372 TGCCACCGACTTGTGTGGGCTTT-TG-AAGGTTGCCACTGAC-T-TGTGGGCTTTTGAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAGAAAGGTTGCCACCGACTTGTGTGGGC-TTTGAAAAGG
4449431 AGAAAGATGC
Statistics
Matches: 173, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
60 6 0.03
61 10 0.06
62 14 0.08
64 3 0.02
65 134 0.77
66 6 0.03
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.29
Consensus pattern (64 bp):
TGCCACCAACTTGTGTGGGCTTTGAGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGT
Found at i:4449535 original size:67 final size:68
Alignment explanation
Indices: 4449458--4449716 Score: 223
Period size: 67 Copynumber: 3.9 Consensus size: 68
4449448 CTGTGGACAT
* * * * * *
4449458 AAAAGGGTGCCACAGAGTTGTAGACTTAGAAGGAGA-AGGAGTGCCATAGAGTTGTGGGC-TTAA
1 AAAAAGGTGCCACGGAGTTGTAGACTTAAAAGGA-ACAAG-GTGCCACAGAGTTGTGGACTTTAA
4449521 AA-AG
64 AAGAG
* * *
4449525 AAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAA
1 AAAAAGGTGCCACGGAGTTGTAGACTTAAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTAAAA
*
4449590 GGG
66 GAG
* * ** * * * * *
4449593 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGGAGTCGCGGACTTTGAA
1 AAAAAG-GTGCCACGGAGTTGTAGACTTAAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTAAA
4449656 AG-G
65 AGAG
* *
4449659 ---AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCAC-GAAGTTGTGGACTTT
1 AAAAAGGTGCCACGGAGTTGTAGACTTAAAAGGAACAAGGTGCCACAG-AGTTGTGGACTTT
4449717 GAAGAAAAGG
Statistics
Matches: 160, Mismatches: 25, Indels: 17
0.79 0.12 0.08
Matches are distributed among these distances:
62 21 0.13
63 4 0.03
64 23 0.14
66 18 0.11
67 66 0.41
68 7 0.04
69 21 0.13
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.19
Consensus pattern (68 bp):
AAAAAGGTGCCACGGAGTTGTAGACTTAAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTAAAA
GAG
Found at i:4449553 original size:33 final size:32
Alignment explanation
Indices: 4449506--4449871 Score: 232
Period size: 32 Copynumber: 11.4 Consensus size: 32
4449496 GAGTGCCATA
* *
4449506 GAGTTGTGGGCTTAAAAAGAAAAAGGTGCCACG
1 GAGTCGTGGACTT-AAAAGAAAAAGGTGCCACG
*
4449539 GAGTCGTGGACTTAAAAGGAACAAGGTGCCACG
1 GAGTCGTGGACTTAAAA-GAAAAAGGTGCCACG
*
4449572 GAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACG
1 GAGTCGTGGAC-TTAAAA--GAAAAAG-GTGCCACG
* * ** *
4449608 GAGTTGTGGGCTTTGAA-AAGAAGGTGCCACG
1 GAGTCGTGGACTTAAAAGAAAAAGGTGCCACG
* * *
4449639 GAGTCGCGGACTTTGAAAG--GAAGGTGCCACG
1 GAGTCGTGGAC-TTAAAAGAAAAAGGTGCCACG
*
4449670 GAGTCGTGGACTTAAAAGGAACAAGGTGCCACG
1 GAGTCGTGGACTTAAAA-GAAAAAGGTGCCACG
* * ** **
4449703 AAGTTGTGGACTTTGAAG-AAAAGGATGCCATT
1 GAGTCGTGGACTTAAAAGAAAAAGG-TGCCACG
** *
4449735 GAGTCGTGGACTT-TGAGACAAAA--TGCCACT
1 GAGTCGTGGACTTAAAAGA-AAAAGGTGCCACG
** * * *
4449765 GAGTCGTGGACTTTGAAGAAAATGATGCCACT
1 GAGTCGTGGACTTAAAAGAAAAAGGTGCCACG
* ** *
4449797 GAGTTGTGGACTT-TGAGATAAAA--TGCCACT
1 GAGTCGTGGACTTAAAAGA-AAAAGGTGCCACG
* ** *
4449827 AAGTCGTGGACTTTGAAG-AAAAGGATGCCACT
1 GAGTCGTGGACTTAAAAGAAAAAGG-TGCCACG
4449859 GAGTCGTGGACTT
1 GAGTCGTGGACTT
4449872 TGAGACAAAA
Statistics
Matches: 272, Mismatches: 41, Indels: 41
0.77 0.12 0.12
Matches are distributed among these distances:
29 4 0.01
30 45 0.17
31 54 0.20
32 71 0.26
33 63 0.23
34 6 0.02
35 11 0.04
36 18 0.07
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22
Consensus pattern (32 bp):
GAGTCGTGGACTTAAAAGAAAAAGGTGCCACG
Found at i:4449578 original size:100 final size:96
Alignment explanation
Indices: 4449463--4449748 Score: 285
Period size: 100 Copynumber: 2.9 Consensus size: 96
4449453 GACATAAAAG
* * * * * *
4449463 GGTGCCACAGAGTTGTAGACTTAGAAGGAGAAGGAGTGCCATAGAGTTGTGGGC-TTAAAAAGAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAG--
*
4449527 AAAGGTGCCACGGAGTCGTGGAC-TTAAAAGGAACAA
64 -AAGGTGCCACGGAGTCGCGGACTTTAAAAGG---AA
* *
4449563 GGTGCCACGGAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAA-GGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAG
*
4449628 AAGGTGCCACGGAGTCGCGGACTTTGAAAGGAA
64 AAGGTGCCACGGAGTCGCGGACTTTAAAAGGAA
* * * *
4449661 GGTGCCACGGAGTCGTGGACTTAAAAGGAACAAG-GTGCCAC-GAAGTTGTGGACTTTGAAGAA-
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAG-AGTTGTGGGCTTT-AAAAAG
** *
4449723 AAGGATGCCATTGAGTCGTGGACTTT
64 AAGG-TGCCACGGAGTCGCGGACTTT
4449749 GAGACAAAAT
Statistics
Matches: 161, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
94 1 0.01
95 23 0.14
96 28 0.17
97 6 0.04
98 21 0.13
100 39 0.24
101 12 0.07
102 24 0.15
103 7 0.04
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.20
Consensus pattern (96 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
GGTGCCACGGAGTCGCGGACTTTAAAAGGAA
Found at i:4449768 original size:30 final size:29
Alignment explanation
Indices: 4449708--4449938 Score: 291
Period size: 30 Copynumber: 7.5 Consensus size: 29
4449698 CCACGAAGTT
*
4449708 GTGGACTTTGAAGAAAAGGATGCCATTGAGTC
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
4449740 GTGGACTTTGAGACAAAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
*
4449770 GTGGACTTTGAAGAAAATGATGCCACTGAGTT
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
*
4449802 GTGGACTTTGAGATAAAATGCCACTAAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
4449832 GTGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
4449864 GTGGACTTTGAGACAAAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
*
4449894 GTGGGCTTTGAGAAGAAATTGCCACTGAGTC
1 GTGGACTTTGAGAA-AAA-TGCCACTGAGTC
*
4449925 GTGGACTTTAAGAA
1 GTGGACTTTGAGAA
4449939 GGTATTTGAA
Statistics
Matches: 180, Mismatches: 8, Indels: 23
0.85 0.04 0.11
Matches are distributed among these distances:
29 1 0.01
30 77 0.43
31 39 0.22
32 63 0.35
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (29 bp):
GTGGACTTTGAGAAAAATGCCACTGAGTC
Found at i:4449781 original size:62 final size:62
Alignment explanation
Indices: 4449632--4449933 Score: 364
Period size: 62 Copynumber: 4.9 Consensus size: 62
4449622 GAAAAGAAGG
* * * * ** *
4449632 TGCCACGGAGTCGCGGACTTTGAA-AGGAAGG-TGCCACGGAGTCGTGGACTTAAAAGGAACAAG
1 TGCCACTGAGTCGTGGACTTTGAAGA-AAAGGATGCCACTGAGTCGTGGACTT-TGA-G-ACAAA
*
4449695 G
62 A
* *
4449696 TGCCAC-GAAGTTGTGGACTTTGAAGAAAAGGATGCCATTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTG-AGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
* * *
4449758 TGCCACTGAGTCGTGGACTTTGAAGAAAATGATGCCACTGAGTTGTGGACTTTGAGATAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
*
4449820 TGCCACTAAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
*
4449882 TGCCACTGAGTCGTGGGCTTTG-AGAAGAA--ATTGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTTGAAGAA-AAGGA-TGCCACTGAGTCGTGGACTTT
4449934 AAGAAGGTAT
Statistics
Matches: 212, Mismatches: 20, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
60 1 0.00
61 25 0.12
62 139 0.66
63 3 0.01
64 25 0.12
65 19 0.09
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (62 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:4449939 original size:31 final size:29
Alignment explanation
Indices: 4449663--4449938 Score: 266
Period size: 30 Copynumber: 8.9 Consensus size: 29
4449653 GAAAGGAAGG
* * *
4449663 TGCCACGGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACTGAGTCGTGGACTT-TAA-GAA-AA-A
*
4449696 TGCCAC-GAAGTTGTGGACTTTGAAGAAAAGGA
1 TGCCACTG-AGTCGTGGACTTT-AAGAAAA--A
* *
4449728 TGCCATTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAGA-AAAA
4449758 TGCCACTGAGTCGTGGACTTTGAAGAAAATGA
1 TGCCACTGAGTCGTGGACTTT-AAGAAAA--A
* *
4449790 TGCCACTGAGTTGTGGACTTTGAGATAAAA
1 TGCCACTGAGTCGTGGACTTTAAGA-AAAA
*
4449820 TGCCACTAAGTCGTGGACTTTGAAGAAAAGGA
1 TGCCACTGAGTCGTGGACTTT-AAGAAAA--A
*
4449852 TGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAGA-AAAA
* *
4449882 TGCCACTGAGTCGTGGGCTTTGAGAAGAAA
1 TGCCACTGAGTCGTGGACTTTAAGAA-AAA
4449912 TTGCCACTGAGTCGTGGACTTTAAGAA
1 -TGCCACTGAGTCGTGGACTTTAAGAA
4449939 GGTATTTGAA
Statistics
Matches: 210, Mismatches: 18, Indels: 32
0.81 0.07 0.12
Matches are distributed among these distances:
29 1 0.00
30 75 0.36
31 41 0.20
32 73 0.35
33 20 0.10
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (29 bp):
TGCCACTGAGTCGTGGACTTTAAGAAAAA
Found at i:4451246 original size:13 final size:13
Alignment explanation
Indices: 4451228--4451252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4451218 CTTTGCACCT
4451228 TTTTTTTTTACTC
1 TTTTTTTTTACTC
4451241 TTTTTTTTTACT
1 TTTTTTTTTACT
4451253 TTTGTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTTTTACTC
Found at i:4457937 original size:52 final size:52
Alignment explanation
Indices: 4457859--4457987 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
4457849 CGAAATATGA
* * *
4457859 AAATTTGCTTGCATGTGTCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGC
* *
4457911 AAATTTGCCTGCATGTATCGATACATTTTATATTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGC
*
4457963 AAATTTGCCTACATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
4457988 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGC
Found at i:4458000 original size:52 final size:52
Alignment explanation
Indices: 4457859--4458007 Score: 174
Period size: 52 Copynumber: 2.9 Consensus size: 52
4457849 CGAAATATGA
* * * ***
4457859 AAATTTGCTTGCATGTGTCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
* *** * *
4457911 AAATTTGCCTGCATGTATCGATACATTTTATATTGTATCAATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
4457963 AAATTTGCCTACATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTACATGTATCGATACATAAGAT-AGTGTATCGATACA
4458008 ATGTGTCGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTACATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
Found at i:4458087 original size:19 final size:18
Alignment explanation
Indices: 4458063--4458125 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
4458053 TAGCTTACAT
4458063 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
4458082 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
4458095 TGTATTGATACAACACTTA
1 TGTATCGATACAA-ACTTA
4458114 TGTATCGATACA
1 TGTATCGATACA
4458126 TTGTATCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
14 1 0.03
16 2 0.06
18 1 0.03
19 22 0.61
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:4458099 original size:32 final size:32
Alignment explanation
Indices: 4458058--4458158 Score: 157
Period size: 32 Copynumber: 3.1 Consensus size: 32
4458048 GGTAGTAGCT
*
4458058 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
*
4458090 TACATTGTATTGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
* *
4458122 TACATTGTATCAATACAACACTTTATGTATCAA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
4458155 TACA
1 TACA
4458159 AATCGTTGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
32 49 0.78
33 14 0.22
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:4461892 original size:44 final size:43
Alignment explanation
Indices: 4461769--4462025 Score: 176
Period size: 44 Copynumber: 5.7 Consensus size: 43
4461759 CCGTTTGACA
* * * ** * *
4461769 GTATTAGCATTAGTCCTGTTCAAACTCTTCCTCTCGTTTGACT
1 GTATTGGCATTAGGCCTGGTCAAACTCTTTTTCTCATTTAACT
* * ** * *
4461812 ATATTGGTATTACTCCTGGTCAAAATCTTTTCTTTCATTTAACT
1 GTATTGGCATTAGGCCTGGTCAAACTCTTTT-TCTCATTTAACT
* * **
4461856 GTATTGGCGTTAGAGCCTGGTCAAACTCTCTTTTTCACTTTCGTTTGTCT
1 GTATTGGCATTAG-GCCTGGTCAAA--CTCTTTTT--C--TCATTTAACT
* *
4461906 GTATTGGCATTAGCCCTAGTCAAACTCTTTTCTCTCATTTAACT
1 GTATTGGCATTAGGCCTGGTCAAACTCTTTT-TCTCATTTAACT
* * * * *
4461950 GTATTGGCATTAGTCCTAGTTAAACT-TTTTTCTCTTGTTTGACT
1 GTATTGGCATTAGGCCTGGTCAAACTCTTTTTCTC--ATTTAACT
4461994 GTATTGGCATTAGTG-CTGGTCAAACTCTTTTT
1 GTATTGGCATTAG-GCCTGGTCAAACTCTTTTT
4462026 ACCCGTGTTT
Statistics
Matches: 167, Mismatches: 34, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
42 4 0.02
43 27 0.16
44 77 0.46
45 15 0.09
46 2 0.01
47 13 0.08
48 1 0.01
49 9 0.05
50 19 0.11
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (43 bp):
GTATTGGCATTAGGCCTGGTCAAACTCTTTTTCTCATTTAACT
Found at i:4462001 original size:138 final size:134
Alignment explanation
Indices: 4461760--4462118 Score: 325
Period size: 138 Copynumber: 2.6 Consensus size: 134
4461750 TCTTTTCTCC
* * * * * * *
4461760 CGTTTGACAGTATTAGCATTAGTCCT-GTTCAAACTC-TTCCTCTCGTTTGACTATATTGGTATT
1 CGTTTGTC-GTATTGGCATTAGCCCTAG-TCAAACTCTTTTCTCTCATTTGACTGTATTGGCATT
* * * * * *
4461823 ACTCCTGGTCAAAATCTTTTCTTTCATTTAACTGTATTGGCGTTAGAGCCTGGTCAAACTCTCTT
64 AGTCCTAGTTAAACTTTTTTCTTTCATTTAACTGTATTGGCATTAGAG-CTGGTCAAACTCT-TT
* **
4461888 TTTCACTTT
127 TTAC-CCGT
*
4461897 CGTTTGTCTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCTCTCATTTAACTGTATTGGCATTA
1 CGTTTGTC-GTATTGGCATTAGCCCTAGTCAAACTCTTTTCTCTCATTTGACTGTATTGGCATTA
* * *
4461962 GTCCTAGTTAAACTTTTTTCTCTT-GTTTGACTGTATTGGCATTAGTGCTGGTCAAACTCTTTTT
65 GTCCTAGTTAAACTTTTTTCT-TTCATTTAACTGTATTGGCATTAGAGCTGGTCAAACTCTTTTT
4462026 ACCCGT
129 ACCCGT
* * * *
4462032 -GTTTGATCATATTGGCGTTAGGCCCTTA-TCAAACTCTTTTCAC-CATTGTTTGATTGTATTGG
1 CGTTTG-TCGTATTGGCATTA-GCCC-TAGTCAAACTCTTTTCTCTCA---TTTGACTGTATTGG
*
4462094 CATTAGGACCTAGTTAAACTTTTTT
60 CATTA-GTCCTAGTTAAACTTTTTT
4462119 TTCACCGCTG
Statistics
Matches: 185, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
134 17 0.09
135 22 0.12
136 7 0.04
137 60 0.32
138 77 0.42
139 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (134 bp):
CGTTTGTCGTATTGGCATTAGCCCTAGTCAAACTCTTTTCTCTCATTTGACTGTATTGGCATTAG
TCCTAGTTAAACTTTTTTCTTTCATTTAACTGTATTGGCATTAGAGCTGGTCAAACTCTTTTTAC
CCGT
Found at i:4462023 original size:88 final size:87
Alignment explanation
Indices: 4461745--4462024 Score: 274
Period size: 94 Copynumber: 3.1 Consensus size: 87
4461735 TCTTACCAAA
* * * * * * * * *
4461745 CAAAGTCTTTTCTCCCGTTTGACAGTATTAGCATTAGTCCTGTTCAAAC-TCTTCCTCTCGTTTG
1 CAAACTCTTTTCTCTCATTTAACTGTATTGGCATTAGTCCTGTT-AAACTTTTTTCTCTTGTTTG
* * *
4461809 ACTATATTGGTATTACTCCTGGT
65 ACTGTATTGGCATTAGTCCTGGT
* * * * * *
4461832 CAAAATCTTTTCTTTCATTTAACTGTATTGGCGTTAGAGCCTGGTCAAACTCTCTTTTTCACTTT
1 CAAACTCTTTTCTCTCATTTAACTGTATTGGCATTAG-TCCT-GTTAAA--CT-TTTTTCTC-TT
* * *
4461897 CGTTTGTCTGTATTGGCATTAGCCCTAGT
60 -GTTTGACTGTATTGGCATTAGTCCTGGT
4461926 CAAACTCTTTTCTCTCATTTAACTGTATTGGCATTAGTCCTAGTTAAACTTTTTTCTCTTGTTTG
1 CAAACTCTTTTCTCTCATTTAACTGTATTGGCATTAGTCCT-GTTAAACTTTTTTCTCTTGTTTG
*
4461991 ACTGTATTGGCATTAGTGCTGGT
65 ACTGTATTGGCATTAGTCCTGGT
4462014 CAAACTCTTTT
1 CAAACTCTTTT
4462025 TACCCGTGTT
Statistics
Matches: 154, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
87 29 0.19
88 41 0.27
89 4 0.03
90 8 0.05
91 2 0.01
92 5 0.03
93 9 0.06
94 56 0.36
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (87 bp):
CAAACTCTTTTCTCTCATTTAACTGTATTGGCATTAGTCCTGTTAAACTTTTTTCTCTTGTTTGA
CTGTATTGGCATTAGTCCTGGT
Found at i:4462113 original size:47 final size:46
Alignment explanation
Indices: 4461853--4462168 Score: 216
Period size: 44 Copynumber: 6.8 Consensus size: 46
4461843 CTTTCATTTA
* * * *
4461853 ACTGTATTGGCGTTAGAGCCTGGTCAAACTCTCTTTTTCA-CTTTCGTTTG
1 ACTGTATTGGCATTAG-CCCTAGTCAAA--CTC-TTTTCACCATT-GTTTG
* * *
4461903 TCTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCTCTCA---TTTA
1 ACTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCAC-CATTGTTTG
* * * *
4461947 ACTGTATTGGCATTAGTCCTAGTTAAACTTTTTTC-TC-TTGTTTG
1 ACTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCACCATTGTTTG
** * * **
4461991 ACTGTATTGGCATTAGTGCTGGTCAAACTCTTTTTACCCGTGTTTG
1 ACTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCACCATTGTTTG
* *
4462037 A-TCATATTGGCGTTAGGCCCTTA-TCAAACTCTTTTCACCATTGTTTG
1 ACT-GTATTGGCATTA-GCCC-TAGTCAAACTCTTTTCACCATTGTTTG
* * * * **
4462084 ATTGTATTGGCATTAGGACCTAGTTAAACTTTTTTTTCACCGCTGTTTG
1 ACTGTATTGGCATTA-GCCCTAGTCAAAC--TCTTTTCACCATTGTTTG
* * *
4462133 ACTATATTGGCATTAGTCCTAGTCAAACTCATTTCA
1 ACTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCA
4462169 TCTTCGCCCA
Statistics
Matches: 211, Mismatches: 41, Indels: 32
0.74 0.14 0.11
Matches are distributed among these distances:
42 1 0.00
44 67 0.32
45 2 0.01
46 30 0.14
47 46 0.22
48 14 0.07
49 37 0.18
50 14 0.07
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (46 bp):
ACTGTATTGGCATTAGCCCTAGTCAAACTCTTTTCACCATTGTTTG
Found at i:4462605 original size:41 final size:39
Alignment explanation
Indices: 4462495--4462615 Score: 100
Period size: 41 Copynumber: 2.9 Consensus size: 39
4462485 TTCATCCCTT
*
4462495 GATCAACTGTTTATCCCTTGTTTACCTGTCGGCTTAGTACC
1 GATCAACT-TTTAT-CCTTGTTTACTTGTCGGCTTAGTACC
* * ** *
4462536 GAGTAAATCTTTTATCCTCTATCGACTTGTCGG-TTCAGTCCC
1 GA-TCAA-CTTTTATCCT-TGTTTACTTGTCGGCTT-AGTACC
*
4462578 GATCAACCTTTTATCTCTTGTTTACTTGTCAGCTTAGT
1 GATCAA-CTTTTATC-CTTGTTTACTTGTCGGCTTAGT
4462616 TCGAAGAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
41 31 0.50
42 29 0.47
43 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.41
Consensus pattern (39 bp):
GATCAACTTTTATCCTTGTTTACTTGTCGGCTTAGTACC
Found at i:4464308 original size:19 final size:19
Alignment explanation
Indices: 4464265--4464376 Score: 134
Period size: 20 Copynumber: 5.7 Consensus size: 19
4464255 CACATCCAGA
** *
4464265 TGTATCGATACATTATGCTT
1 TGTATCGATACATGCT-CAT
4464285 TGTATCGATACATGCTCAT
1 TGTATCGATACATGCTCAT
*
4464304 TGTATCGATACATACTCAAT
1 TGTATCGATACATGCTC-AT
4464324 TGTATCGATACATGCTCAT
1 TGTATCGATACATGCTCAT
* *
4464343 TGTATCAATACATACTCAAT
1 TGTATCGATACATGCTC-AT
*
4464363 TGTATTGATACATG
1 TGTATCGATACATG
4464377 TAACTGGCAG
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
19 35 0.44
20 45 0.56
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGCTCAT
Found at i:4464311 original size:39 final size:40
Alignment explanation
Indices: 4464265--4464376 Score: 160
Period size: 39 Copynumber: 2.9 Consensus size: 40
4464255 CACATCCAGA
*
4464265 TGTATCGATACATTA-TGC-TTTGTATCGATACATGCTCAT
1 TGTATCGATACATTACT-CAATTGTATCGATACATGCTCAT
4464304 TGTATCGATACA-TACTCAATTGTATCGATACATGCTCAT
1 TGTATCGATACATTACTCAATTGTATCGATACATGCTCAT
* *
4464343 TGTATCAATACA-TACTCAATTGTATTGATACATG
1 TGTATCGATACATTACTCAATTGTATCGATACATG
4464377 TAACTGGCAG
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 3 0.04
39 65 0.96
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (40 bp):
TGTATCGATACATTACTCAATTGTATCGATACATGCTCAT
Found at i:4464439 original size:13 final size:13
Alignment explanation
Indices: 4464421--4464450 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4464411 GATACATTGG
*
4464421 ACATTGTATCGAT
1 ACATTGTATCAAT
4464434 ACATTGTATCAAT
1 ACATTGTATCAAT
4464447 ACAT
1 ACAT
4464451 GGTTAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
ACATTGTATCAAT
Found at i:4466268 original size:38 final size:38
Alignment explanation
Indices: 4466216--4466291 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
4466206 TGAGTGTAAG
* *
4466216 AAACCAGGGCATATAAAGTTTGATTGTCCGACATTGAA
1 AAACCAGGGCATATAAAGTTTGATTGTCCAACACTGAA
*
4466254 AAACCAGGGTATATAAAGTTTGATTGTCCAACACTGAA
1 AAACCAGGGCATATAAAGTTTGATTGTCCAACACTGAA
4466292 GAAGAAAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (38 bp):
AAACCAGGGCATATAAAGTTTGATTGTCCAACACTGAA
Found at i:4467184 original size:19 final size:20
Alignment explanation
Indices: 4467143--4467190 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
4467133 CCAATTTCAC
**
4467143 GTATCGATATAATTGTCCAT
1 GTATCGATATAATTGAACAT
4467163 GTATCGATATAA-TGAACAT
1 GTATCGATATAATTGAACAT
4467182 GTATCGATA
1 GTATCGATA
4467191 CATTGTATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (20 bp):
GTATCGATATAATTGAACAT
Found at i:4478892 original size:19 final size:19
Alignment explanation
Indices: 4478850--4478921 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
4478840 ACACCTAGAC
*
4478850 GTATCGATACAT-TATGCTTT
1 GTATCGATACATGT-T-CATT
4478870 GTATCGATACATGTTCATT
1 GTATCGATACATGTTCATT
**
4478889 GTATCGATACATGGACAATT
1 GTATCGATACATGTTC-ATT
4478909 GTATCGATACATG
1 GTATCGATACATG
4478922 AAGCTGGTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
19 17 0.36
20 29 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
GTATCGATACATGTTCATT
Found at i:4479015 original size:33 final size:33
Alignment explanation
Indices: 4478951--4479015 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
4478941 TACCACTGTT
* *
4478951 TGTATCGATACATGGTACATTATATCGATACAG
1 TGTATCGATACATGATACATTATATCAATACAG
*
4478984 TGTATCGATACATGATGA-ATTGTATCAATACA
1 TGTATCGATACATGAT-ACATTATATCAATACA
4479016 TTGATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATGATACATTATATCAATACAG
Found at i:4481845 original size:20 final size:20
Alignment explanation
Indices: 4481782--4481846 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
4481772 CCTATTTTCT
4481782 GATACATTGAACAATCTATC
1 GATACATTGAACAATCTATC
* **
4481802 GATACTCATTTATGAA--T-T-
1 GATA--CATTGAACAATCTATC
4481820 GATACATTGAACAATCTATC
1 GATACATTGAACAATCTATC
4481840 GATACAT
1 GATACAT
4481847 CTGGAAAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
16 7 0.21
18 5 0.15
19 2 0.06
20 12 0.36
22 7 0.21
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (20 bp):
GATACATTGAACAATCTATC
Found at i:4485636 original size:19 final size:19
Alignment explanation
Indices: 4485611--4485667 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
4485601 TTGTATCGAT
* *
4485611 ACATTGTATCAATACATGT
1 ACATTGTATCGATACATGG
* *
4485630 TCATTGTATTGATACATGG
1 ACATTGTATCGATACATGG
4485649 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
4485668 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:4485725 original size:20 final size:20
Alignment explanation
Indices: 4485696--4485733 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4485686 CTACCACTAT
*
4485696 TTGTACCGATACATTGTACA
1 TTGTACCGATACAATGTACA
*
4485716 TTGTATCGATACAATGTA
1 TTGTACCGATACAATGTA
4485734 TCGATGCATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (20 bp):
TTGTACCGATACAATGTACA
Found at i:4485811 original size:19 final size:20
Alignment explanation
Indices: 4485787--4485824 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4485777 ATAATTTTAA
*
4485787 ATGAA-TGTATCGATACATT
1 ATGAATTGTATCAATACATT
4485806 ATGAATTGTATCAATACAT
1 ATGAATTGTATCAATACAT
4485825 AGCTATAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGAATTGTATCAATACATT
Found at i:4491794 original size:13 final size:13
Alignment explanation
Indices: 4491776--4491802 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4491766 ACAATATTCT
4491776 TTGTATCGATACA
1 TTGTATCGATACA
4491789 TTGTATCGATACA
1 TTGTATCGATACA
4491802 T
1 T
4491803 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4491967 original size:20 final size:20
Alignment explanation
Indices: 4491929--4491968 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
4491919 TTACAAATTT
4491929 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
4491950 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
4491969 TATCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:4494403 original size:20 final size:20
Alignment explanation
Indices: 4494378--4494431 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
4494368 CTACCACTGT
* *
4494378 TTGTATCGAAACATGGT-ACA
1 TTGTATCGATACATGATGA-A
4494398 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
4494418 TTGTATCGATACAT
1 TTGTATCGATACAT
4494432 TGCTTCTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:4494480 original size:19 final size:20
Alignment explanation
Indices: 4494456--4494493 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
4494446 ATAATTTCAA
4494456 ATGAA-TGTATCGATACATT
1 ATGAATTGTATCGATACATT
4494475 ATGAATTGTATCGATACAT
1 ATGAATTGTATCGATACAT
4494494 AGCTACGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGAATTGTATCGATACATT
Found at i:4496378 original size:50 final size:51
Alignment explanation
Indices: 4496284--4496394 Score: 145
Period size: 50 Copynumber: 2.2 Consensus size: 51
4496274 TTGAATAATG
* *
4496284 TATCGATACATCTGGGTAAAATACCTAGATATATCGATACAATGATCAATA
1 TATCGATACATCTGGGTAAAAAACCTAGATATATCGATACAATGATAAATA
* * * *
4496335 TATCGATACAT-TTGGTAAAAAATCC-AGATGTATCGATATAATGATAAATG
1 TATCGATACATCTGGGTAAAAAA-CCTAGATATATCGATACAATGATAAATA
4496385 TATCGATACA
1 TATCGATACA
4496395 ATGTATTGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
50 40 0.75
51 13 0.25
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (51 bp):
TATCGATACATCTGGGTAAAAAACCTAGATATATCGATACAATGATAAATA
Found at i:4500348 original size:20 final size:21
Alignment explanation
Indices: 4500323--4500378 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
4500313 TTACAAGCCA
4500323 ATGTATCGATACATTTTA-TC
1 ATGTATCGATACATTTTAGTC
* *
4500343 ATGTATCGATACAATATAGTC
1 ATGTATCGATACATTTTAGTC
4500364 -TGTATCGATACATTT
1 ATGTATCGATACATTT
4500379 AAATGTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATTTTAGTC
Found at i:4500387 original size:20 final size:20
Alignment explanation
Indices: 4500323--4500394 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
4500313 TTACAAGCCA
*
4500323 ATGTATCGATACATTT-TAT
1 ATGTATCGATACATTTAAAT
* *
4500342 CATGTATCGATACA-ATATAGT
1 -ATGTATCGATACATTTA-AAT
*
4500363 CTGTATCGATACATTTAAAT
1 ATGTATCGATACATTTAAAT
*
4500383 GTGTATCGATAC
1 ATGTATCGATAC
4500395 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.02
20 38 0.90
21 3 0.07
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTAAAT
Found at i:4501078 original size:21 final size:22
Alignment explanation
Indices: 4501052--4501095 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
4501042 TTTTCTTTTC
4501052 TCTCCCCCTTAATAAAA-AATT
1 TCTCCCCCTTAATAAAATAATT
* *
4501073 TCTCCCTCTTAGTAAAATAATT
1 TCTCCCCCTTAATAAAATAATT
4501095 T
1 T
4501096 AATACTTTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (22 bp):
TCTCCCCCTTAATAAAATAATT
Found at i:4502959 original size:13 final size:13
Alignment explanation
Indices: 4502941--4502965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4502931 ATAATCCCCT
4502941 TGTATCGATACAA
1 TGTATCGATACAA
4502954 TGTATCGATACA
1 TGTATCGATACA
4502966 GAGAATGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4509161 original size:20 final size:20
Alignment explanation
Indices: 4509136--4509213 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
4509126 TTACAAGCCA
*
4509136 ATGTATCGATACATTTTATT
1 ATGTATCGATACATTTTAAT
* * *
4509156 ATGTATCGATACAATGTAGT
1 ATGTATCGATACATTTTAAT
*
4509176 ATGTATCGATACATTTAAAT
1 ATGTATCGATACATTTTAAT
* *
4509196 GTGTATCGATACTTTTTA
1 ATGTATCGATACATTTTA
4509214 GGGTTTTAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTAAT
Found at i:4515357 original size:19 final size:20
Alignment explanation
Indices: 4515335--4515376 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
4515325 GGGAGTAATT
4515335 TTTG-AAAATAAATTTGGCA
1 TTTGCAAAATAAATTTGGCA
*
4515354 TTTGCCAAATAAATTTGGCA
1 TTTGCAAAATAAATTTGGCA
4515374 TTT
1 TTT
4515377 TGGCATTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (20 bp):
TTTGCAAAATAAATTTGGCA
Found at i:4515406 original size:28 final size:27
Alignment explanation
Indices: 4515346--4515406 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
4515336 TTGAAAATAA
* *
4515346 ATTTGGCATTTGCCAAATAAATTTGGC
1 ATTTGGCATTTGACAAATAAATTTGAC
4515373 ATTTTGGCATTTGACAAATAAATTTTGAC
1 A-TTTGGCATTTGACAAATAAA-TTTGAC
4515402 ATTTG
1 ATTTG
4515407 ACAAAGGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 1 0.03
28 23 0.77
29 6 0.20
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (27 bp):
ATTTGGCATTTGACAAATAAATTTGAC
Found at i:4516147 original size:20 final size:19
Alignment explanation
Indices: 4516124--4516195 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
4516114 CACATCCAGA
4516124 TGTATCGATACATTATGCTT
1 TGTATCGATACA-TATGCTT
4516144 TGTATCGATAC-T-TGCTCAT
1 TGTATCGATACATATGCT--T
* *
4516163 TGTATCGATACATATTCAAT
1 TGTATCGATACATATGC-TT
4516183 TGTATCGATACAT
1 TGTATCGATACAT
4516196 GAAACTGGCA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 12 0.27
20 26 0.58
21 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATATGCTT
Found at i:4516167 original size:19 final size:20
Alignment explanation
Indices: 4516143--4516195 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
4516133 ACATTATGCT
* *
4516143 TTGTATCGATACTTGCTC-A
1 TTGTATCGATACATACTCAA
*
4516162 TTGTATCGATACATATTCAA
1 TTGTATCGATACATACTCAA
4516182 TTGTATCGATACAT
1 TTGTATCGATACAT
4516196 GAAACTGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATACTCAA
Found at i:4517224 original size:155 final size:154
Alignment explanation
Indices: 4517022--4517327 Score: 436
Period size: 155 Copynumber: 2.0 Consensus size: 154
4517012 TTTCTATGAA
* * *
4517022 TTTTGAATTTTTTCCTTGAAATTCTTTTTTTCGAAATACGAAATTTTCTACTCCGTAAATT-TTA
1 TTTTAAATTTTTTCCTCGAAATTCTTTTTTTCGAAATACGAAATTTTCTACTCCATAAATTGTTA
*
4517086 GGGGGGAGATTTTTCTTAGTTTTTGGCTTTAAAATTCATCAAATATTATTATTTACTTCAGATTA
66 GGGGGGA-ATTTTTCTTAGTTTTTAGCTTTAAAATTCATCAAATATTATTATTTACTTCAGATTA
*
4517151 ATTCAGTTTT-AAAAATTCATTAGT
130 ATTAAGTTTTCAAAAATTCATTAGT
* * *
4517175 TTTTAAATTTTTTCCTCGAAATTTTCTTTTTTTCGAAATATGGAGTTTTCTACTCCATAAATTGT
1 TTTTAAATTTTTTCCTCGAAA--TTCTTTTTTTCGAAATACGAAATTTTCTACTCCATAAATTGT
** * ** * *
4517240 TTTGGGGGAATTTTTCTTGGTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCATATT
64 TAGGGGGGAATTTTTCTTAGTTTTTAGCTTTAAAATTCATCAAATATTATTATTTACTTCAGATT
4517305 AATTAAGTTTTCAAAAATTCATT
129 AATTAAGTTTTCAAAAATTCATT
4517328 CATTTTCATG
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
153 19 0.14
155 96 0.72
156 19 0.14
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.51
Consensus pattern (154 bp):
TTTTAAATTTTTTCCTCGAAATTCTTTTTTTCGAAATACGAAATTTTCTACTCCATAAATTGTTA
GGGGGGAATTTTTCTTAGTTTTTAGCTTTAAAATTCATCAAATATTATTATTTACTTCAGATTAA
TTAAGTTTTCAAAAATTCATTAGT
Found at i:4517356 original size:166 final size:163
Alignment explanation
Indices: 4517166--4517678 Score: 435
Period size: 168 Copynumber: 3.1 Consensus size: 163
4517156 GTTTTAAAAA
* * *
4517166 TTCATTAGTTTTTAAATTTTTTCCTCGAAATTTTCTTTTTTTCGAAATATGGAGTTTTCTACTCC
1 TTCATGAGTTTTTAATTTTTTTCCT-GAAATTTTCTTTTTTTCGAAATA-CGAGTTTTCTACTCC
* * * *
4517231 ATAAATTGTTTTGGGGGAATTTTTCTTGGTTTTTATTTTTAAAATTCATCAAATATTATTATTTA
64 GTAAATTTTTTTAGGGGAATTTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTA
* * *
4517296 TTTCATATT-AATTAAGTTTTCAAAAATTCATTCATT
129 -TTCATATTAAATCAA-TTTTAAAAAATTAATTCATT
* * * * * * * *
4517332 TTCATGAGTTTTTTATTTTTTTCCTTAAAATTCCTCTTTTCCTGAAATACGATATTTTCTACTCT
1 TTCATGAGTTTTTAATTTTTTTCCTGAAATTTTCTTTTTTTC-GAAATACGA-GTTTTCTACTCC
** * * *
4517397 GTAAATTTTTTTCA-GGGAATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAAGATCATCATT
64 GTAAATTTTTTT-AGGGGAATTTTTCTTGGTTTT-AATTTTTAAAATTCATCAAATATTATTATT
4517461 TGATTCATATTAAATCAATTTTAAAAAATTAATTCATT
127 T-ATTCATATTAAATCAATTTTAAAAAATTAATTCATT
* ** ** * * *
4517499 TTCTTGAAG-TTTGGATTTTTTTGTTGAAATTCCTTTTTTTTTTCGAGAAAACGAGTTTTCTTCT
1 TTCATG-AGTTTTTAATTTTTTTCCTGAAATT--TTCTTTTTTTCGA-AATACGAGTTTTCTACT
* * ** * * * *
4517563 TCGTAAATTTTTTTAGGGCAATTTTTCTTGGATTAAAATTTTTAAAACTCATCTAATGTTGTTAT
62 CCGTAAATTTTTTTAGGGGAATTTTTCTTGG-TTTTAATTTTTAAAATTCATCAAATATTATTAT
* * *
4517628 TTAACTCTCATA--AAATCAGTTTCAAAAAATTTAATTTA-T
126 TT-A-T-TCATATTAAATCAATTTTAAAAAA-TTAATTCATT
*
4517667 TTCATGAATTTT
1 TTCATGAGTTTT
4517679 GTTTTTTTCC
Statistics
Matches: 274, Mismatches: 57, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
165 14 0.05
166 65 0.24
167 76 0.28
168 91 0.33
169 23 0.08
170 5 0.02
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.51
Consensus pattern (163 bp):
TTCATGAGTTTTTAATTTTTTTCCTGAAATTTTCTTTTTTTCGAAATACGAGTTTTCTACTCCGT
AAATTTTTTTAGGGGAATTTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATT
CATATTAAATCAATTTTAAAAAATTAATTCATT
Found at i:4517519 original size:167 final size:165
Alignment explanation
Indices: 4517220--4517537 Score: 390
Period size: 167 Copynumber: 1.9 Consensus size: 165
4517210 AAATATGGAG
** ** * *
4517220 TTTTCTACTCCATAAATTGTTTTGGGGGAATTTTTCTTGGTTTTTATTTTTAAAATTCATCAAAT
1 TTTTCTACTCCATAAATTGTTTTCAGGGAATTTTTCTCAGTTTTAATTTTTAAAATTCATCAAAG
* * * * * **
4517285 ATTATTATTTATTTCATATTAATTAAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTTATTT
66 ATCATCATTTATTTCATATTAATCAAGTTTTAAAAAATTAATTCATTTTCATGAGTTTTGGATTT
4517350 TTTTCCTTAAAATTCCTCTTTTCCTGAAATACGATA
131 TTTT-CTTAAAATTCCTCTTTTCCTGAAATACGATA
** *
4517386 TTTTCTACTCTGTAAATTTTTTTCAGGGAATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAA
1 TTTTCTACTCCATAAATTGTTTTCAGGGAATTTTTCTCAGTTTT-AATTTTTAAAATTCATCAAA
*
4517451 GATCATCATTTGA-TTCATATTAAATCAA-TTTTAAAAAATTAATTCATTTTCTTGAAG-TTTGG
65 GATCATCATTT-ATTTCATATT-AATCAAGTTTTAAAAAATTAATTCATTTTCATG-AGTTTTGG
* * *
4517513 ATTTTTTTGTTGAAATTCCTTTTTT
127 ATTTTTTTCTTAAAATTCCTCTTTT
4517538 TTTTCGAGAA
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
166 51 0.40
167 69 0.54
168 8 0.06
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (165 bp):
TTTTCTACTCCATAAATTGTTTTCAGGGAATTTTTCTCAGTTTTAATTTTTAAAATTCATCAAAG
ATCATCATTTATTTCATATTAATCAAGTTTTAAAAAATTAATTCATTTTCATGAGTTTTGGATTT
TTTTCTTAAAATTCCTCTTTTCCTGAAATACGATA
Found at i:4518023 original size:13 final size:11
Alignment explanation
Indices: 4518004--4518034 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
4517994 GCAAAGTGAG
4518004 AAGAAAAAGAGA
1 AAGAAAAA-AGA
4518016 AAGAAAAAAGA
1 AAGAAAAAAGA
4518027 AAGAAAAA
1 AAGAAAAA
4518035 TAGTGAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAGA
Found at i:4526637 original size:22 final size:22
Alignment explanation
Indices: 4526612--4526656 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
4526602 TCATTTCGGT
* *
4526612 TTTAATTTTTTCAATTTTTAAA
1 TTTAATTTTCTCAATATTTAAA
*
4526634 TTTAATTTTCTCGATATTTAAA
1 TTTAATTTTCTCAATATTTAAA
4526656 T
1 T
4526657 AATCATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTAATTTTCTCAATATTTAAA
Found at i:4528914 original size:12 final size:13
Alignment explanation
Indices: 4528882--4528915 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
4528872 TTTCTTTCCC
4528882 TCTTTTCTAAGCT
1 TCTTTTCTAAGCT
*
4528895 TCTTTTCTATGCT
1 TCTTTTCTAAGCT
4528908 T-TTTTCTA
1 TCTTTTCTA
4528916 GATTTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.12, C:0.21, G:0.06, T:0.62
Consensus pattern (13 bp):
TCTTTTCTAAGCT
Found at i:4529582 original size:20 final size:20
Alignment explanation
Indices: 4529547--4529614 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
4529537 ATTCTATTGC
* *
4529547 TACATTTAGCAAATGTATCAA
1 TACATTT-GAAAATGTATCGA
*
4529568 TACATTTGAAAATGTATTGA
1 TACATTTGAAAATGTATCGA
* **
4529588 TACTTTTGACTATGTATCGA
1 TACATTTGAAAATGTATCGA
4529608 TACATTT
1 TACATTT
4529615 CAATCCAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
20 32 0.82
21 7 0.18
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (20 bp):
TACATTTGAAAATGTATCGA
Found at i:4531846 original size:93 final size:93
Alignment explanation
Indices: 4531687--4531873 Score: 347
Period size: 93 Copynumber: 2.0 Consensus size: 93
4531677 CTTGAGATGT
*
4531687 CTTGGAGTAATTCCAAGCCACAAAAACTTGTACACCAAGCTTGGATGTCATAAATCAAAGTTGTC
1 CTTGGAGTAATTCCAAGCCACAAAAACTTGTACACCAAGCTTGGATGTCATAAATCAAAGGTGTC
4531752 TAAGTGTCTAGTCTTTAACAATTATCCA
66 TAAGTGTCTAGTCTTTAACAATTATCCA
* *
4531780 CTTGGAGTAATTCCAAGCCACAAAAACTTGTGCACCAATCTTGGATGTCATAAATCAAAGGTGTC
1 CTTGGAGTAATTCCAAGCCACAAAAACTTGTACACCAAGCTTGGATGTCATAAATCAAAGGTGTC
4531845 TAAGTGTCTAGTCTTTAACAATTATCCA
66 TAAGTGTCTAGTCTTTAACAATTATCCA
4531873 C
1 C
4531874 ACAAGTGATT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.30
Consensus pattern (93 bp):
CTTGGAGTAATTCCAAGCCACAAAAACTTGTACACCAAGCTTGGATGTCATAAATCAAAGGTGTC
TAAGTGTCTAGTCTTTAACAATTATCCA
Found at i:4533426 original size:33 final size:32
Alignment explanation
Indices: 4533384--4533447 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
4533374 TACACCCAGA
*
4533384 TGTATCGATAAATATTGATTACTATCGATACAT
1 TGTATCGATAAATATTCA-TACTATCGATACAT
* *
4533417 TGTATCGATACATATTCATAGTATCGATACA
1 TGTATCGATAAATATTCATACTATCGATACA
4533448 CCTTGAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (32 bp):
TGTATCGATAAATATTCATACTATCGATACAT
Found at i:4536812 original size:79 final size:78
Alignment explanation
Indices: 4536679--4537088 Score: 457
Period size: 79 Copynumber: 5.2 Consensus size: 78
4536669 ACAACGGGGC
* * * ** *
4536679 TGGAGTATCCCCGATTATG-GAAAATCGATGTTTTAAAAATAAAATTGGGATTGGAGTATCCCCG
1 TGGAGTATCCCCGATTATGAG-AAATCAATATTTTAAGAATAAAACCGGGGTTGGAGTATCCCC-
*
4536743 TGAAAATAATAGGGT
64 TGAAAATAACAGGGT
* * *
4536758 TGGAGTATCCTCGATTATGAGAAATCAATATTTTAAGAATAAAATCGGGGTTGGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAAGAATAAAACCGGGGTTGGAGTATCCCCTG
*
4536823 AGAAATAACGGGGT
66 A-AAATAACAGGGT
* * * *
4536837 TGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGGAATAAAGCCGGGGTTAGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAAGAATAAAACCGGGGTTGGAGTATCCCCT-
*
4536902 GGAAATAAC-GAGGT
65 GAAAATAACAG-GGT
* * * * * *
4536916 TGGAGTATTCCCGATTGTGATAAATCAATATTTT-AGAAATAAAGCTGGGGTTGGAGTATTCCCT
1 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAAG-AATAAAACCGGGGTTGGAGTATCCCCT
* *
4536980 TAGAAATAACGGGGT
65 GA-AAATAACAGGGT
* ** * *
4536995 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAGGAATAATGCCAGGGTTAGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAAGAATAAAACCGGGGTTGGAGTATCCCCT-
*
4537060 GGAAATAACAGGGT
65 GAAAATAACAGGGT
4537074 TGGAGTATCCCCGAT
1 TGGAGTATCCCCGAT
4537089 GATTAACGAG
Statistics
Matches: 285, Mismatches: 37, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
78 4 0.01
79 278 0.98
80 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
TGGAGTATCCCCGATTATGAGAAATCAATATTTTAAGAATAAAACCGGGGTTGGAGTATCCCCTG
AAAATAACAGGGT
Found at i:4536966 original size:158 final size:158
Alignment explanation
Indices: 4536671--4537088 Score: 551
Period size: 158 Copynumber: 2.6 Consensus size: 158
4536661 TGGAGATAAC
* * * ** *** * *
4536671 AACGGGGCTGGAGTATCCCCGATTATG-GAAAATCGATGTTTTAAAAATAAAATTGGGATTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATGAG-AAATCAATATTTTAGGAATAAAGCCGGGGTTAGAG
* *
4536735 TATCCCCGT-GAAAATAATAGGGTTGGAGTA-TCCTCGATTATGAGAAATCAATATTTTAAGAAT
65 TATCCCC-TCGGAAATAACAGGGTTGGAGTATTCC-CGATTATGAGAAATCAATATTTTAAGAAT
4536798 AAAATCGGGGTTGGAGTATCCCCTCAGAAAT
128 AAAATCGGGGTTGGAGTATCCCCTCAGAAAT
*
4536829 AACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGGAATAAAGCCGGGGTTAGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGGAATAAAGCCGGGGTTAGAGT
* *
4536894 ATCCCCTCGGAAATAAC-GAGGTTGGAGTATTCCCGATTGTGATAAATCAATATTTT-AGAA-AT
66 ATCCCCTCGGAAATAACAG-GGTTGGAGTATTCCCGATTATGAGAAATCAATATTTTAAGAATA-
* * *
4536956 AAAGCTGGGGTTGGAGTATTCCCTTAGAAAT
129 AAATC-GGGGTTGGAGTATCCCCTCAGAAAT
* *
4536987 AACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGGAATAATGCCAGGGTTAGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGGAATAAAGCCGGGGTTAGAGT
*
4537052 ATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGAT
66 ATCCCCTCGGAAATAACAGGGTTGGAGTATTCCCGAT
4537089 GATTAACGAG
Statistics
Matches: 231, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 215 0.93
159 5 0.02
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (158 bp):
AACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGGAATAAAGCCGGGGTTAGAGT
ATCCCCTCGGAAATAACAGGGTTGGAGTATTCCCGATTATGAGAAATCAATATTTTAAGAATAAA
ATCGGGGTTGGAGTATCCCCTCAGAAAT
Found at i:4537207 original size:51 final size:50
Alignment explanation
Indices: 4537098--4537330 Score: 243
Period size: 51 Copynumber: 4.5 Consensus size: 50
4537088 TGATTAACGA
* * *
4537098 GGTTGGAGTATCCCCAATTGTGAAAAAATTGGTGTTTTTGGAAATAAAATAGG
1 GGTTGGAGTATCCCCGATTGTG--AAAATTGGTG-TTTTGAAAATAAAATCGG
* * *
4537151 AGTTGGAGTATCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAATTGGTGTTTTGAAAATAAAATCGG
* * * *
4537202 GGTTGGAGTATCCTCGATTGTGGAAAATTGGTGTTTCGAAAGTAAAATCGA
1 GGTTGGAGTATCCCCGATTGT-GAAAATTGGTGTTTTGAAAATAAAATCGG
* * * *
4537253 AGTCGGAGTATCCCCAATTGTGAAAAATTAGTGTTTT-AGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTG-AAAATTGGTGTTTTGA-AAATAAAATCGG
* *
4537304 GGTTGGAGTACCCCCTGATTATGAAAA
1 GGTTGGAGTATCCCC-GATTGTGAAAA
4537331 ATTGAGAAAC
Statistics
Matches: 149, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
50 2 0.01
51 113 0.76
52 15 0.10
53 18 0.12
54 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.30
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGAAAATTGGTGTTTTGAAAATAAAATCGG
Found at i:4537280 original size:102 final size:103
Alignment explanation
Indices: 4537098--4537318 Score: 270
Period size: 102 Copynumber: 2.1 Consensus size: 103
4537088 TGATTAACGA
* * *
4537098 GGTTGGAGTATCCCCAATTGTGAAAAAATTGGTGTTTTTGGAAATAAAATAGGAGTTGGAGTATC
1 GGTTGGAGTATCCCCAATTGTGAAAAAATTGGTG-TTTTCGAAATAAAATAGAAGTCGGAGTATC
* *
4537163 CCCGATTATAGAAAATTGGTGTTTT-GAAAATAAAACCGG
65 CCCAATTATAGAAAATTAGTGTTTTAG-AAATAAAACCGG
* * * *
4537202 GGTTGGAGTATCCTCGATTGTG-GAAAATTGGTG-TTTCGAAAGTAAAATCGAAGTCGGAGTATC
1 GGTTGGAGTATCCCCAATTGTGAAAAAATTGGTGTTTTCGAAA-TAAAATAGAAGTCGGAGTATC
* *
4537265 CCCAATTGT-GAAAAATTAGTGTTTTAGAAATAAAATCGG
65 CCCAATTATAG-AAAATTAGTGTTTTAGAAATAAAACCGG
*
4537304 GGTTGGAGTACCCCC
1 GGTTGGAGTATCCCC
4537319 TGATTATGAA
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
101 8 0.08
102 62 0.61
103 11 0.11
104 20 0.20
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (103 bp):
GGTTGGAGTATCCCCAATTGTGAAAAAATTGGTGTTTTCGAAATAAAATAGAAGTCGGAGTATCC
CCAATTATAGAAAATTAGTGTTTTAGAAATAAAACCGG
Found at i:4539648 original size:20 final size:20
Alignment explanation
Indices: 4539623--4539677 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
4539613 AAAATGTCTG
4539623 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
4539643 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
*
4539663 AATGTATTGATACAT
1 AATGTATCGATACAT
4539678 CTGGGTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTGTAA
Found at i:4539733 original size:13 final size:13
Alignment explanation
Indices: 4539715--4539740 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4539705 ACAAAGATCC
4539715 ATGTATCGATACA
1 ATGTATCGATACA
4539728 ATGTATCGATACA
1 ATGTATCGATACA
4539741 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4539800 original size:13 final size:13
Alignment explanation
Indices: 4539778--4539832 Score: 65
Period size: 13 Copynumber: 3.9 Consensus size: 13
4539768 ACAACACTTA
4539778 TGTATCGATACAT
1 TGTATCGATACAT
*
4539791 TGTATTGATACCACTT
1 TGTATCGATA-CA--T
4539807 ATGTATCGATACAT
1 -TGTATCGATACAT
4539821 TGTATCGATACA
1 TGTATCGATACA
4539833 AATCGTTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
13 21 0.58
14 3 0.08
16 3 0.08
17 9 0.25
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4539808 original size:30 final size:31
Alignment explanation
Indices: 4539758--4539832 Score: 125
Period size: 30 Copynumber: 2.4 Consensus size: 31
4539748 GGCAGTAGCT
4539758 TTGTATCGATACAACACTTATGTATCGATACA
1 TTGTATCGATAC-ACACTTATGTATCGATACA
*
4539790 TTGTATTGATAC-CACTTATGTATCGATACA
1 TTGTATCGATACACACTTATGTATCGATACA
4539820 TTGTATCGATACA
1 TTGTATCGATACA
4539833 AATCGTTGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 29 0.73
32 11 0.28
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (31 bp):
TTGTATCGATACACACTTATGTATCGATACA
Found at i:4543099 original size:33 final size:33
Alignment explanation
Indices: 4543057--4543122 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
4543047 TACACATTTA
4543057 ATTGTATCGATACATGTTGCACAGTATCGATAC
1 ATTGTATCGATACATGTTGCACAGTATCGATAC
* **
4543090 ATTGTATCGATACCTGTTGCATTGTATCGATAC
1 ATTGTATCGATACATGTTGCACAGTATCGATAC
4543123 TTTAAAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACATGTTGCACAGTATCGATAC
Found at i:4543469 original size:33 final size:33
Alignment explanation
Indices: 4543432--4543498 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
4543422 TTCAACGATT
*
4543432 TGTATTGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
4543465 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
4543498 T
1 T
4543499 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:4543470 original size:13 final size:13
Alignment explanation
Indices: 4543452--4543476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4543442 CATAAAATGT
4543452 TGTATCGATACAA
1 TGTATCGATACAA
4543465 TGTATCGATACA
1 TGTATCGATACA
4543477 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4543557 original size:13 final size:13
Alignment explanation
Indices: 4543539--4543563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4543529 ATTACTCAAA
4543539 TGTATCGATACAT
1 TGTATCGATACAT
4543552 TGTATCGATACA
1 TGTATCGATACA
4543564 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4543627 original size:51 final size:52
Alignment explanation
Indices: 4543572--4543691 Score: 208
Period size: 52 Copynumber: 2.3 Consensus size: 52
4543562 CACTGATCTT
*
4543572 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
4543623 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
4543675 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
4543692 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
51 19 0.29
52 44 0.67
53 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:4546849 original size:13 final size:13
Alignment explanation
Indices: 4546831--4546855 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4546821 ACACACAGTA
4546831 TGTATCGATACAT
1 TGTATCGATACAT
4546844 TGTATCGATACA
1 TGTATCGATACA
4546856 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4546852 original size:32 final size:33
Alignment explanation
Indices: 4546811--4546878 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
4546801 GTAGCCAAAC
**
4546811 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
4546843 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
4546876 TTG
1 TTG
4546879 GCCTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:4548975 original size:13 final size:13
Alignment explanation
Indices: 4548957--4548981 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4548947 ACTGCATTCT
4548957 TAGTATCGATACA
1 TAGTATCGATACA
4548970 TAGTATCGATAC
1 TAGTATCGATAC
4548982 TGAGTTCTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TAGTATCGATACA
Found at i:4548981 original size:33 final size:33
Alignment explanation
Indices: 4548939--4549003 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
4548929 AAACCCAGAT
4548939 GTATCGATACTGCA-TTC-TTAGTATCGATACATA
1 GTATCGATACTG-AGTTCTTTA-TATCGATACATA
4548972 GTATCGATACTGAGTTCTTTATATCGATACAT
1 GTATCGATACTGAGTTCTTTATATCGATACAT
4549004 GGGTACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 1 0.03
33 26 0.87
34 3 0.10
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (33 bp):
GTATCGATACTGAGTTCTTTATATCGATACATA
Found at i:4552765 original size:3 final size:3
Alignment explanation
Indices: 4552757--4552798 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
4552747 ATTAATAAAA
4552757 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4552799 GATTGCATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4553799 original size:13 final size:13
Alignment explanation
Indices: 4553781--4553806 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4553771 CTATTTATGA
4553781 TGTATCGATACAC
1 TGTATCGATACAC
4553794 TGTATCGATACAC
1 TGTATCGATACAC
4553807 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:4553910 original size:22 final size:22
Alignment explanation
Indices: 4553883--4553941 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
4553873 GTGAACAGTG
*
4553883 TGAACAGTGATGTATCAATACA
1 TGAACAGTGATGAATCAATACA
*
4553905 TGAACAGTGATGAATCGATACA
1 TGAACAGTGATGAATCAATACA
4553927 TGAACAGTGATGAAT
1 TGAACAGTGATGAAT
4553942 AGTGATGAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (22 bp):
TGAACAGTGATGAATCAATACA
Found at i:4553945 original size:10 final size:10
Alignment explanation
Indices: 4553874--4553956 Score: 62
Period size: 10 Copynumber: 8.0 Consensus size: 10
4553864 TAGTGATACG
4553874 TGAACAGTG-
1 TGAACAGTGA
4553883 TGAACAGTGA
1 TGAACAGTGA
* * *
4553893 TGTATCAATACA
1 TG-AACAGT-GA
4553905 TGAACAGTGA
1 TGAACAGTGA
*
4553915 TGAATC-GATACA
1 TGAA-CAG-T-GA
4553927 TGAACAGTGA
1 TGAACAGTGA
*
4553937 TGAATAGTGA
1 TGAACAGTGA
4553947 TGAACAGTGA
1 TGAACAGTGA
4553957 AAATGAGATT
Statistics
Matches: 57, Mismatches: 10, Indels: 13
0.71 0.12 0.16
Matches are distributed among these distances:
9 9 0.16
10 27 0.47
11 12 0.21
12 9 0.16
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.24
Consensus pattern (10 bp):
TGAACAGTGA
Found at i:4554045 original size:53 final size:53
Alignment explanation
Indices: 4553982--4554116 Score: 234
Period size: 53 Copynumber: 2.5 Consensus size: 53
4553972 ACTTCCAATA
4553982 TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTCCCAATGACCTG
1 TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTCCCAATGACCTG
* * *
4554035 TATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCCTG
1 TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTCCCAATGACCTG
4554088 TATCGATACATATTTGTGTGTATCGATAC
1 TATCGATACATATTT-TGTGTATCGATAC
4554117 TATGCAATTT
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 64 0.83
54 13 0.17
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (53 bp):
TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTCCCAATGACCTG
Found at i:4554149 original size:20 final size:20
Alignment explanation
Indices: 4554086--4554156 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
4554076 GCCAATGTCC
**
4554086 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
4554106 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
4554126 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
4554146 TGTATCGATAC
1 TGTATCGATAC
4554157 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:4554222 original size:21 final size:21
Alignment explanation
Indices: 4554196--4554236 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4554186 GTCAACCTTG
4554196 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
4554217 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
4554237 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:4559041 original size:52 final size:52
Alignment explanation
Indices: 4558976--4559101 Score: 184
Period size: 52 Copynumber: 2.4 Consensus size: 52
4558966 TCCAATATAT
*
4558976 TGAAGAATGTATCGATACATTT-CGGCCAAAAA-CTCAAAATGTATCGATACAA
1 TGAATAATGTATCGATACATTTAC-GCCAAAAACCT-AAAATGTATCGATACAA
* * *
4559028 TGAATAATGTATCGATATATTTACGTCAAAAACCTAAAATGTATCGATACGA
1 TGAATAATGTATCGATACATTTACGCCAAAAACCTAAAATGTATCGATACAA
4559080 TGAATAATGTATCGATACATTT
1 TGAATAATGTATCGATACATTT
4559102 TCTTTCTAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
52 64 0.96
53 3 0.04
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (52 bp):
TGAATAATGTATCGATACATTTACGCCAAAAACCTAAAATGTATCGATACAA
Found at i:4560608 original size:21 final size:21
Alignment explanation
Indices: 4560582--4560625 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
4560572 TACAGCGGAT
4560582 CACGGCAAGGAACCATATCCG
1 CACGGCAAGGAACCATATCCG
4560603 CACGGCAAGGAACCATATCCG
1 CACGGCAAGGAACCATATCCG
4560624 CA
1 CA
4560626 ATATACATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.34, G:0.23, T:0.09
Consensus pattern (21 bp):
CACGGCAAGGAACCATATCCG
Found at i:4561138 original size:45 final size:45
Alignment explanation
Indices: 4561058--4561144 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
4561048 GGTCCTGGAA
* *
4561058 GTGGAGGAGGAGGAAATAGTGATGCACGTGCTGGTGGTGGTGCAT
1 GTGGAGGAGGAGGAAATAGTAATGCACGCGCTGGTGGTGGTGCAT
* * * *
4561103 GTGGAGGAGGAGGAAATGGTAATGGAGGCGGTGGTGGTGGTG
1 GTGGAGGAGGAGGAAATAGTAATGCACGCGCTGGTGGTGGTG
4561145 GTGGTGGTGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.22, C:0.06, G:0.52, T:0.21
Consensus pattern (45 bp):
GTGGAGGAGGAGGAAATAGTAATGCACGCGCTGGTGGTGGTGCAT
Found at i:4563249 original size:2 final size:2
Alignment explanation
Indices: 4563242--4563281 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
4563232 TCAAGATAAT
4563242 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4563282 CATCTGAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4566021 original size:34 final size:34
Alignment explanation
Indices: 4565949--4566062 Score: 106
Period size: 34 Copynumber: 3.3 Consensus size: 34
4565939 GTGTATAAAA
*
4565949 TAAATA-ATTAAAAATTA-TATTTATATCTATAAT
1 TAAATATATTAAAAATTATTATTTATATTTAT-AT
* * *
4565982 AAAATATATTAAAAATAATTATTGATATTTATAT
1 TAAATATATTAAAAATTATTATTTATATTTATAT
**
4566016 TAAATAATAATTAAATTTTATTAATTTATTATTTATAT
1 TAAAT-AT-ATTAAAAATTATT-ATTTA-TATTTATAT
*
4566054 TAAAAATAT
1 TAAATATAT
4566063 ATTATTAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
33 5 0.08
34 16 0.25
35 13 0.20
36 12 0.18
37 6 0.09
38 13 0.20
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (34 bp):
TAAATATATTAAAAATTATTATTTATATTTATAT
Found at i:4566035 original size:23 final size:24
Alignment explanation
Indices: 4565986--4566036 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
4565976 TATAATAAAA
*
4565986 TATATTAAAAATAATTATTGATATT
1 TATATTAAAAATAATTA-TAATATT
4566011 TATATTAAATAATAATTA-AAT-TT
1 TATATTAAA-AATAATTATAATATT
4566034 TAT
1 TAT
4566037 TAATTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.21
24 2 0.08
25 9 0.38
26 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
TATATTAAAAATAATTATAATATT
Found at i:4566068 original size:31 final size:31
Alignment explanation
Indices: 4565985--4566070 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 31
4565975 CTATAATAAA
4565985 ATATATTAAAAATA-ATTATTGATATTTATATT
1 ATATATTAAAAATATATTATT-A-ATTTATATT
* *
4566017 AAATAATAATTAAAT-T-TTATTAATTTATTATT
1 ATATATTAA--AAATATATTATTAATTTA-TATT
4566049 -TATATTAAAAATATATTATTAA
1 ATATATTAAAAATATATTATTAA
4566071 AATATATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
29 4 0.09
30 1 0.02
31 18 0.41
32 12 0.27
33 5 0.11
34 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (31 bp):
ATATATTAAAAATATATTATTAATTTATATT
Found at i:4579591 original size:22 final size:22
Alignment explanation
Indices: 4579564--4579618 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
4579554 CTCATTCTCA
4579564 TCAATCTCCAATGGAGCAAATC
1 TCAATCTCCAATGGAGCAAATC
*
4579586 TTAATCTCCAATGGAGCAAATC
1 TCAATCTCCAATGGAGCAAATC
*
4579608 TCAGTCTCCAA
1 TCAATCTCCAA
4579619 ATCTTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (22 bp):
TCAATCTCCAATGGAGCAAATC
Found at i:4579865 original size:27 final size:27
Alignment explanation
Indices: 4579824--4581197 Score: 1339
Period size: 27 Copynumber: 49.9 Consensus size: 27
4579814 CAACCTTTTT
* * *
4579824 CTTTTAAATCTACAACTCCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
4579851 CTTTTAAGTCCACAACTCCGTGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4579878 CTTTTAAGTCCACAACTCTGTGACACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4579905 CTTTTAAGTCCACAACTCCATGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * * *
4579932 TTTTTAAGTTCACAGCTCTGTGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * *
4579959 CTTTTAAGTCCTCAGCTCCATGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4579986 CTTTTAAGTCCACAGCTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4580013 TTTTTAAGTCCACAACTCCGTGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4580040 CTTTTAAGTCCACAACTCTGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
4580067 CTTTCAAATTCCACAACTTCGTGGCACC
1 CTTT-TAAGTCCACAACTCCGTGGCACC
**
4580095 CTTTTAAGTCCACAACTTTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * *
4580122 CTTTTAAGTTCAGAGCTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
4580149 CTTTTAAGGTCCACAACTTCGTGGCACC
1 CTTTTAA-GTCCACAACTCCGTGGCACC
* * * * *
4580177 ATTTTCAGTCCATAACTCCGTAGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACC
4580204 CTTTTAAGTCCACAACTCCGTGGCAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
4580232 CTTTTTAAGTCCACAACTCCATGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
* * *
4580260 CTTTTAAGTCCACAAGTCAGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * * * *
4580287 ATTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTT-TAAGTCCACAACTCCGTGGCACC
* *
4580315 ATTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
4580342 CTTTTAAGTCCACAACTCTGTGGCAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
4580370 CATTTTAAGTCCACAACTTCGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
* * *
4580398 ATTTTTAGTCCATAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * *
4580425 ATTTTCAGTCCATAACTCCGTGGTAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* * *
4580453 TTTTTTAAGTCCATAACTCTGTGGCACC
1 -CTTTTAAGTCCACAACTCCGTGGCACC
* * *
4580481 CTTTTAAGTCCACAAGTCAGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * * ** *
4580508 ATTTCAAAGCCCACAAGTTAGTGGCATC
1 CTTT-TAAGTCCACAACTCCGTGGCACC
* * * *
4580536 ATTTTAAATCCACAACTCTGTAGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
4580563 CTTTTAAGTCCACAGCTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *** *
4580590 CTTTTAAGGCCCATAACTTTATGGCAAC
1 CTTTTAA-GTCCACAACTCCGTGGCACC
* *
4580618 CTTTTAAGTCTACAACTCTGTGGCA-C
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
4580644 CTTTTAAGGTCCACAACTCCGTGGCACT
1 CTTTTAA-GTCCACAACTCCGTGGCACC
** *
4580672 CTTCGAAAGTCCACAACTTCGTGGCACC
1 CTT-TTAAGTCCACAACTCCGTGGCACC
* *
4580700 CTTTTAAAGTCCACAACACCGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* * * *
4580728 TTTTTAAAGTCCACAACTATC-TAGCATC
1 CTTTT-AAGTCCACAACT-CCGTGGCACC
* * * * *
4580756 CTTTAAAATCTATAACTCCGTGGTACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4580783 CTTTAAAGTCCATAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4580810 CTTTTAAGTCCACAGCTCCATGGCAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* * *
4580838 CATTTCAAGTCCATAGCTCCGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
*
4580866 CTTTTAAGTCCACAACTCCTTGGCAGCCC
1 CTTTTAAGTCCACAACTCCGTGGCA--CC
4580895 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4580922 CTTTTAAGTCCACAACTCCATAGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
4580949 CTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
4580977 CTTTTAAAGTCCATAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
4581005 CTTTTAAAGTTCACAACTCCGTGGCATCC
1 CTTTT-AAGTCCACAACTCCGTGGCA-CC
* * *
4581034 TTTTTAAGTCCATAACTCCATGGCAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
***
4581062 CATTTTAAGTCCACAACTCTACGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
* * *
4581090 CTTTTAAGTCCACCACTTCGTGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
4581117 CTTTTTAGTCCACAACTCCGTGGTAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
4581145 CTTTTTAAGTCCACAACTCCATGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
* *
4581173 CTTTTAAGTCCACAAGTCAGTGGCA
1 CTTTTAAGTCCACAACTCCGTGGCA
4581198 TTTTTTCATA
Statistics
Matches: 1124, Mismatches: 197, Indels: 52
0.82 0.14 0.04
Matches are distributed among these distances:
26 9 0.01
27 656 0.58
28 295 0.26
29 164 0.15
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:4580264 original size:56 final size:55
Alignment explanation
Indices: 4579824--4581197 Score: 1295
Period size: 56 Copynumber: 25.0 Consensus size: 55
4579814 CAACCTTTTT
* * * *
4579824 CTTTTAAATCTACAACTCCGTGGCACAC-TTTTAAGTCCACAACTCCGTGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * *
4579878 CTTTTAAGTCCACAACTCTGTGACACCC-TTTTAAGTCCACAACTCCATGGCACA
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * * * * * *
4579932 TTTTTAAGTTCACAGCTCTGTGGCAACC-TTTTAAGTCCTCAGCTCCATGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * *
4579986 CTTTTAAGTCCACAGCTTCGTGGCA-CCTTTTTAAGTCCACAACTCCGTGGCAAC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * ** * *
4580040 CTTTTAAGTCCACAACTCTGTGGCATCCTTTCAAATTCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
** * * * *
4580095 CTTTTAAGTCCACAACTTTGTGGCACCC-TTTTAAGTTCAGAGCTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * * *
4580149 CTTTTAAGGTCCACAACTTCGTGGCA-CCATTTTCAGTCCATAACTCCGTAGCACA
1 CTTTTAA-GTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
*
4580204 CTTTTAAGTCCACAACTCCGTGGCAGCCCTTTTTAAGTCCACAACTCCATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * ** * * * *
4580260 CTTTTAAGTCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * *
4580315 ATTTTAAGTCCACAACTCTGTGGCACCC-TTTTAAGTCCACAACTCTGTGGCAGCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCA-CC
* * *
4580370 CATTTTAAGTCCACAACTTCGTGGCACCATTTTT-AGTCCATAACTCCGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * * * *
4580425 ATTTTCAGTCCATAACTCCGTGGTAGCCTTTTTTAAGTCCATAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * ** * * ** *
4580481 CTTTTAAGTCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * *
4580536 ATTTTAAATCCACAACTCTGTAGCACCC-TTTTAAGTCCACAGCTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * *** * * *
4580590 CTTTTAAGGCCCATAACTTTATGGCAACC-TTTTAAGTCTACAACTCTGTGGCA-C
1 CTTTTAA-GTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* *** *
4580644 CTTTTAAGGTCCACAACTCCGTGGCACTCTTCGAAAGTCCACAACTTCGTGGCACC
1 CTTTTAA-GTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * *
4580700 CTTTTAAAGTCCACAACACCGTGGCA-TCTTTTTAAAGTCCACAACTATC-TAGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTT-AAGTCCACAACT-CCGTGGCACC
* * * * * * *
4580756 CTTTAAAATCTATAACTCCGTGGTACCC-TTTAAAGTCCATAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * * * *
4580810 CTTTTAAGTCCACAGCTCCATGGCAGCCCATTTCAAGTCCATAGCTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTTAAGTCCACAACTCCGTGGCACC
* *
4580866 CTTTTAAGTCCACAACTCCTTGGCAGCCCCTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * *
4580922 CTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* * *
4580977 CTTTTAAAGTCCATAACTCCGTGGCACCCTTTTAAAGTTCACAACTCCGTGGCATCC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCA-CC
* * * * ***
4581034 TTTTTAAGTCCATAACTCCATGGCAGCCCATTTTAAGTCCACAACTCTACGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTTAAGTCCACAACTCCGTGGCACC
* * * *
4581090 CTTTTAAGTCCACCACTTCGTGGCACACTTTTT-AGTCCACAACTCCGTGGTAGCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCA-CC
* * *
4581145 CTTTTTAAGTCCACAACTCCATGGCACCC-TTTTAAGTCCACAAGTCAGTGGCA
1 C-TTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCA
4581198 TTTTTTCATA
Statistics
Matches: 1077, Mismatches: 216, Indels: 52
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.00
54 336 0.31
55 311 0.29
56 391 0.36
57 36 0.03
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (55 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
Found at i:4581185 original size:83 final size:81
Alignment explanation
Indices: 4579824--4581197 Score: 1265
Period size: 83 Copynumber: 16.6 Consensus size: 81
4579814 CAACCTTTTT
* * *
4579824 CTTTTAAATCTACAACTCCGTGGCACACTTTTAAGTCCACAACTCCGTGGCA-ACCTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACA-CTTTTAAGTC
* *
4579888 CACAACTCTGTGACACC
65 CACAACTCCGTGGCACC
* ** * * *
4579905 CTTTTAAGTCCACAACTCCATGGCACATTTTTAAGTTCACAGCTCTGTGGCA-ACCTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACA-CTTTTAAGTC
* * * *
4579969 CTCAGCTCCATGGCAAC
65 CACAACTCCGTGGCACC
* * *
4579986 CTTTTAAGTCCACAGCTTCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCA-ACCTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACA-CTTTTAAGTC
* *
4580050 CACAACTCTGTGGCATC
65 CACAACTCCGTGGCACC
* * * ** * *
4580067 CTTTCAAATTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTTTGTGGCACCCTTTTAAGTT
1 CTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACACTTTTAAGTC
* * *
4580132 CAGAGCTCTGTGGCACC
65 CACAACTCCGTGGCACC
* * * * *
4580149 CTTTTAAGGTCCACAACTTCGTGGCACCATTTTCAGTCCATAACTCCGTAGCACACTTTTAAGTC
1 CTTTTAA-GTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACACTTTTAAGTC
4580214 CACAACTCCGTGGCAGCC
65 CACAACTCCGTGGCA-CC
* * * *
4580232 CTTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAAGTCAGTGGCATCA-TTTCAAAG
1 C-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CACTTT-TAAG
* * * *
4580296 CCCACAAGTCAGTGGCATC
63 TCCACAACTCCGTGGCACC
* * * *
4580315 ATTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCAGCCCATTTTAAGT
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CAC-TTTTAAGT
*
4580380 CCACAACTTCGTGGCACC
64 CCACAACTCCGTGGCACC
* * * * * * *
4580398 ATTTTTAGTCCATAACTCCGTGGCACCATTTTCAGTCCATAACTCCGTGGTAGC-CTTTTTTAAG
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CAC--TTTTAAG
* *
4580462 TCCATAACTCTGTGGCACC
63 TCCACAACTCCGTGGCACC
* * * * * * * ** *
4580481 CTTTTAAGTCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAGTGGCATCA-TTTTAAAT
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCA-CACTTTTAAGT
* *
4580545 CCACAACTCTGTAGCACC
64 CCACAACTCCGTGGCACC
* * * ***
4580563 CTTTTAAGTCCACAGCTCCGTGGCACCCTTTTAAGGCCCATAACTTTATGGCA-ACCTTTTAAGT
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAA-GTCCACAACTCCGTGGCACA-CTTTTAAGT
* *
4580627 CTACAACTCTGTGGCA-C
64 CCACAACTCCGTGGCACC
* ** * *
4580644 CTTTTAAGGTCCACAACTCCGTGGCACTCTTCGAAAGTCCACAACTTCGTGGCACCCTTTTAAAG
1 CTTTTAA-GTCCACAACTCCGTGGCACCCTT-TTAAGTCCACAACTCCGTGGCACACTTTT-AAG
* *
4580709 TCCACAACACCGTGGCATC
63 TCCACAACTCCGTGGCACC
* * * * * * * * * * *
4580728 TTTTTAAAGTCCACAACTATC-TAGCATCCTTTAAAATCTATAACTCCGTGGTACCCTTTAAAGT
1 CTTTT-AAGTCCACAACT-CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACACTTTTAAGT
*
4580792 CCATAACTCCGTGGCACC
64 CCACAACTCCGTGGCACC
* * * * * *
4580810 CTTTTAAGTCCACAGCTCCATGGCAGCCCATTTCAAGTCCATAGCTCCGTGGCACCCTTTTAAGT
1 CTTTTAAGTCCACAACTCCGTGGCA-CCC-TTTTAAGTCCACAACTCCGTGGCACACTTTTAAGT
*
4580875 CCACAACTCCTTGGCAGCCC
64 CCACAACTCCGTGGCA--CC
* * *
4580895 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACACTTTT-AAGTC
*
4580960 CACAACTCTGTGGCACC
65 CACAACTCCGTGGCACC
* *
4580977 CTTTTAAAGTCCATAACTCCGTGGCACCCTTTTAAAGTTCACAACTCCGTGGCATC-CTTTTTAA
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCA-CAC-TTTTAA
* *
4581041 GTCCATAACTCCATGGCAGCC
62 GTCCACAACTCCGTGGCA-CC
*** * * *
4581062 CATTTTAAGTCCACAACTCTACGGCACCCTTTTAAGTCCACCACTTCGTGGCACACTTTTTAGTC
1 C-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACACTTTTAAGTC
*
4581127 CACAACTCCGTGGTAGCC
65 CACAACTCCGTGGCA-CC
* * *
4581145 CTTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAAGTCAGTGGCA
1 C-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA
4581198 TTTTTTCATA
Statistics
Matches: 1066, Mismatches: 192, Indels: 68
0.80 0.14 0.05
Matches are distributed among these distances:
80 2 0.00
81 168 0.16
82 334 0.31
83 361 0.34
84 138 0.13
85 59 0.06
86 4 0.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (81 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACACTTTTAAGTCC
ACAACTCCGTGGCACC
Found at i:4581221 original size:28 final size:28
Alignment explanation
Indices: 4581189--4581550 Score: 251
Period size: 28 Copynumber: 12.9 Consensus size: 28
4581179 AGTCCACAAG
** *
4581189 TCAGTGGCATTTTTTCATAGCCCATGAA
1 TCAGTGGCACCTTTTCATAGCCCACGAA
*
4581217 TCAGTGGCACCTTTTCATAGCCTACGAA
1 TCAGTGGCACCTTTTCATAGCCCACGAA
*
4581245 TCAGTGGCACCTTTTCATAGCCCACAAA
1 TCAGTGGCACCTTTTCATAGCCCACGAA
* *
4581273 TTAGTGGCATCC-TTTCAAAGCCCAC-AA
1 TCAGTGGCA-CCTTTTCATAGCCCACGAA
*
4581300 GTCAGTGGCATCTTTTCATAGCCCACGAA
1 -TCAGTGGCACCTTTTCATAGCCCACGAA
4581329 TCAGTGGCACCTTTTCATAGCCCAC-AA
1 TCAGTGGCACCTTTTCATAGCCCACGAA
* *
4581356 GTTAGTGGCATCC-TTTCAAAGCCCAC-AA
1 -TCAGTGGCA-CCTTTTCATAGCCCACGAA
* * *
4581384 GTCAATGGCATCC-TTTCAAAGCCCA-TAA
1 -TCAGTGGCA-CCTTTTCATAGCCCACGAA
* * * *
4581412 GTCAATGGCATCC-TTTCAAAGCCTACAAA
1 -TCAGTGGCA-CCTTTTCATAGCCCACGAA
* * *
4581441 TTAGTAGCATCC-TTTCAGAGCCCAC-AA
1 TCAGTGGCA-CCTTTTCATAGCCCACGAA
* * *
4581468 GTCAGTGGCATCTTTTTAGAGCCCAC-AA
1 -TCAGTGGCACCTTTTCATAGCCCACGAA
* * * * *
4581496 GTTAGTGGCATCATTTTCAAAGCCCATGAG
1 -TCAGTGGCA-CCTTTTCATAGCCCACGAA
* * * *
4581526 TTAGTGGCATCTTTTTAAAGCCCAC
1 TCAGTGGCACCTTTTCATAGCCCAC
4581551 CCAACTCGAT
Statistics
Matches: 284, Mismatches: 38, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
27 8 0.03
28 247 0.87
29 28 0.10
30 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
TCAGTGGCACCTTTTCATAGCCCACGAA
Found at i:4581251 original size:56 final size:56
Alignment explanation
Indices: 4581166--4581550 Score: 354
Period size: 56 Copynumber: 6.9 Consensus size: 56
4581156 CACAACTCCA
* * *
4581166 TGGCACCCTTTT-A-AGTCCACAAGTCAGTGGCATTTTTTCATAGCCCATGAATCAG
1 TGGCA-CCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAATCAG
* * * *
4581221 TGGCACCTTTTCATAGCCTACGAA-TCAGTGGCACCTTTTCATAGCCCACAAATTAG
1 TGGCACCTTTTCATAGCCCAC-AAGTCAGTGGCATCTTTTCATAGCCCACGAATCAG
*
4581277 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAATCAG
1 TGGCA-CCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAATCAG
* * * *
4581333 TGGCACCTTTTCATAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCAC-AAGTCAA
1 TGGCACCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAA-TCAG
* * * * * * * *
4581389 TGGCATCC-TTTCAAAGCCCATAAGTCAATGGCATCCTTTCAAAGCCTACAAATTAG
1 TGGCA-CCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAATCAG
* * * * *
4581445 TAGCATCC-TTTCAGAGCCCACAAGTCAGTGGCATCTTTTTAGAGCCCAC-AAGTTAG
1 TGGCA-CCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAA-TCAG
* * ** * * *
4581501 TGGCATCATTTTCAAAGCCCATGAGTTAGTGGCATCTTTTTAAAGCCCAC
1 TGGCA-CCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCAC
4581551 CCAACTCGAT
Statistics
Matches: 280, Mismatches: 39, Indels: 20
0.83 0.12 0.06
Matches are distributed among these distances:
54 6 0.02
55 14 0.05
56 216 0.77
57 44 0.16
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (56 bp):
TGGCACCTTTTCATAGCCCACAAGTCAGTGGCATCTTTTCATAGCCCACGAATCAG
Found at i:4581280 original size:84 final size:86
Alignment explanation
Indices: 4581166--4581550 Score: 414
Period size: 84 Copynumber: 4.6 Consensus size: 86
4581156 CACAACTCCA
* * * ** * *
4581166 TGGCACCCTTTT--AAGTCCACAAGTCAGTGGCATTTTTTCATAGCCCATGAA-TCAGTGGCACC
1 TGGCATCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCA-CAAGTCAGTGGCACC
*
4581228 TTTTCATAGCCTACGAA-TCAG
65 TTTTCATAGCCCACGAAGTCAG
* * *
4581249 TGGCA-CCTTTTCATAGCCCACAAATTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCT
1 TGGCATCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCT
4581313 TTTCATAGCCCACGAA-TCAG
66 TTTCATAGCCCACGAAGTCAG
* *
4581333 TGGCA-CCTTTTCATAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCATCC
1 TGGCATCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CC
* * *
4581397 -TTTCAAAGCCCA-TAAGTCAA
65 TTTTCATAGCCCACGAAGTCAG
* * * * *
4581417 TGGCATCC-TTTCAAAGCCTACAAATTAGTAGCATCCTTTCAGAGCCCACAAGTCAGTGGCATCT
1 TGGCATCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCT
* * *
4581481 TTTTAGAGCCCAC-AAGTTAG
66 TTTCATAGCCCACGAAGTCAG
* ** * *
4581501 TGGCATCATTTTCAAAGCCCATGAGTTAGTGGCATCTTTTTAAAGCCCAC
1 TGGCATCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCAC
4581551 CCAACTCGAT
Statistics
Matches: 257, Mismatches: 36, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
82 6 0.02
83 10 0.04
84 205 0.80
85 36 0.14
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (86 bp):
TGGCATCCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCT
TTTCATAGCCCACGAAGTCAG
Found at i:4581284 original size:251 final size:251
Alignment explanation
Indices: 4579856--4581287 Score: 835
Period size: 247 Copynumber: 5.8 Consensus size: 251
4579846 GCACACTTTT
* * *
4579856 AAGTCCACAACTCCGTGGCA-ACCTTTTAAGTCCACAACTCTGTGACA--CCCTTTTAAGTCCAC
1 AAGTCCACAGCTCCGTGGCACA-CTTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAAGTCCAC
** * * ** * * * * *
4579918 AACTCCATGGCACATTTTTAAGTTCACAGCTCTGTGGCAACCTTTT-AAGTCCTCAGCTCCA-TG
65 AACTCCATGGCACCCTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGCCCACAACT-CAGTG
* * ** * * * * *
4579981 GCAACCTTTT-AAGTCCACAGCTTC-GTGGCA-CCTTTTTAAGTCCACAACTCCGTGGCAACC-T
129 GCACCCTTTTAAAGTCCATA-AATCAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCATCCTT
* ** * * * * ** *
4580042 TTTAAGTCCACAACTCTGTGGCATCCTTTCAAATTCCACAACTTCGTGGCA-CCC-TTTT
193 TTTAAGTCCATAACTCCATGGCACCCTTT-TAAGTCCACAACTCCACGGCAGCCCATTTC
* ** * * * * *
4580100 AAGTCCACAACTTTGTGGCACCCTTTTAAGTTCAGAGCTCTGTGGCA--CCCTTTTAAGGTCCAC
1 AAGTCCACAGCTCCGTGGCACACTTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAA-GTCCAC
* * * * * * * * *
4580163 AACTTCGTGGCACCATTTTCAGTCCATAACTCCGTAGCACACTTTT-AAGTCCACAACTCCGTGG
65 AACTCCATGGCACCCTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGCCCACAACTCAGTGG
* * * * * *
4580227 CAGCCCTTTTTAAGTCCACAACTCCA-TGGCACCCTTTT-AAGTCCACAAGTCAGTGGCATCATT
130 CA-CCCTTTTAAAGTCCATAAAT-CAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCATCCTT
** * * * * * *** *
4580290 TCAAAGCCCACAAGT-CAGTGGCATCATTTTAAGTCCACAACTCTGTGGCA-CCC-TTTT
193 TTTAAGTCCATAACTCCA-TGGCACCCTTTTAAGTCCACAACTCCACGGCAGCCCATTTC
* * * * * *
4580347 AAGTCCACAACTCTGTGGCAGCCCATTTTAAGTCCACAACTTCGTGGCA--CCATTTTTAGTCCA
1 AAGTCCACAGCTCCGTGGCA-CAC-TTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAAGTCCA
* * * * * * * * * * * * *
4580410 TAACTCCGTGGCACCATTTTCAGTCCATAACTCCGTGGTAGCCTTTTTTAAGTCCATAACTCTGT
64 CAACTCCATGGCACCCTTTTAAGTCCACAACTCCATAGCA-CCCTTTTAAAGCCCACAACTCAGT
* * * * * * * *
4580475 GGCACCCTTTT-AAGTCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAGTGGCAT-CAT
128 GGCACCCTTTTAAAGTCCATAAATCAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCATCCTT
* * ** * * ** *
4580538 TTTAAATCCACAACTCTGTAGCACCCTTTTAAGTCCACAGCTCCGTGGCA-CCC-TTTT
193 TTTAAGTCCATAACTCCATGGCACCCTTTTAAGTCCACAACTCCACGGCAGCCCATTTC
* * * *** * *
4580595 AAGGCCCATAACTTTATGGCA-ACCTTTTAAGTCTACAACTCTGTGGCA---CCTTTTAAGGTCC
1 AA-GTCCACAGCTCCGTGGCACA-CTTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAA-GTCC
* * ** * * * * * *
4580656 ACAACTCCGTGGCACTCTTCGAAAGTCCACAACTTCGTGGCACCCTTTTAAAGTCCACAACACCG
63 ACAACTCCATGGCACCCTT-TTAAGTCCACAACTCCATAGCACCCTTTTAAAGCCCACAACTCAG
* * * * * ** * * * * *
4580721 TGGCATCTTTTTAAAGTCCACAACTATC--TAGCATCC-TTTAAAATCTATAACTCCGTGGTA-C
127 TGGCACCCTTTTAAAGTCCATAA--ATCAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCATC
* * * * *
4580782 CCTTTAAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCACAGCTCCATGGCAGCCCATTTC
190 CTTTTTAAGTCCATAACTCCATGGCACCCTTTTAAGTCCACAACTCCACGGCAGCCCATTTC
* * *
4580844 AAGTCCATAGCTCCGTGGCACCCTTTTAAGTCCACAACTCCTTGGCAGCCCCTTTTAAGTCCACA
1 AAGTCCACAGCTCCGTGGCACACTTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAAGTCCACA
* * *
4580909 ACTCCGTGGCACCCTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGTCCACAACTCTGTGGC
66 ACTCCATGGCACCCTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGCCCACAACTCAGTGGC
* * ** * *
4580974 ACCCTTTTAAAGTCCATAACTCCGTGGCACCCTTTTAAAGTTCACAACTCCGTGGCATCCTTTTT
131 ACCCTTTTAAAGTCCATAAATCAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCATCCTTTTT
* *
4581039 AAGTCCATAACTCCATGGCAGCCCATTTTAAGTCCACAACTCTACGGCA-CCC-TTTT
196 AAGTCCATAACTCCATGGCA-CCC-TTTTAAGTCCACAACTCCACGGCAGCCCATTTC
* * * *
4581095 AAGTCCACCA-CTTCGTGGCACACTTTTTAGTCCACAACTCCGTGGTAGCCCTTTTTAAGTCCAC
1 AAGTCCA-CAGCTCCGTGGCACACTTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAAGTCCAC
* * ** * *
4581159 AACTCCATGGCACCCTTTTAAGTCCACAAGT-CAGTGGCA-TTTTTTCATAGCCCATGAA-TCAG
65 AACTCCATGGCACCCTTTTAAGTCCACAACTCCA-TAGCACCCTTTT-AAAGCCCA-CAACTCAG
* * *
4581221 TGGCA-CCTTTTCATAG-CC-TACGAATCAGTGGCA-CCTTTTCATAGCCCACAAATTAGTGGCA
127 TGGCACCCTTTT-AAAGTCCATA--AATCAGTGGCACCCTTTT-AAAGCCCACAAATCAGTGGCA
4581282 TCCTTT
188 TCCTTT
4581288 CAAAGCCCAC
Statistics
Matches: 961, Mismatches: 182, Indels: 83
0.78 0.15 0.07
Matches are distributed among these distances:
244 49 0.05
245 55 0.06
246 13 0.01
247 211 0.22
248 210 0.22
249 142 0.15
250 81 0.08
251 170 0.18
252 9 0.01
253 21 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (251 bp):
AAGTCCACAGCTCCGTGGCACACTTTTAAGTCCACAACTCCGTGGCAGCCCCTTTTAAGTCCACA
ACTCCATGGCACCCTTTTAAGTCCACAACTCCATAGCACCCTTTTAAAGCCCACAACTCAGTGGC
ACCCTTTTAAAGTCCATAAATCAGTGGCACCCTTTTAAAGCCCACAAATCAGTGGCATCCTTTTT
AAGTCCATAACTCCATGGCACCCTTTTAAGTCCACAACTCCACGGCAGCCCATTTC
Found at i:4587900 original size:78 final size:79
Alignment explanation
Indices: 4587795--4587994 Score: 235
Period size: 78 Copynumber: 2.6 Consensus size: 79
4587785 AATAACAGGG
* * * * * * *
4587795 TTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTTTGAGAAATCGATGA-TTAG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTAG
*
4587859 AAAAAAAATC-GGGA
65 AAAAAAAAGCTGGGA
* * *
4587873 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * *
4587938 GAATAAAGCTGGGG
66 AAAAAAAGCTGGGA
*
4587952 TTGGAGTATCCCCTCGGAAA-AACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
4587995 GATTAACGGG
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 1 0.01
78 81 0.78
79 22 0.21
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAAGCTGGGA
Found at i:4587986 original size:27 final size:27
Alignment explanation
Indices: 4587948--4588020 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
4587938 GAATAAAGCT
**
4587948 GGGGTTGGAGTATCCCCTCGGAAAAAC
1 GGGGTTGGAGTATCCCCGAGGAAAAAC
* **
4587975 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGAGGAAAAAC
*
4588002 GGGGTTGGAGTGTCCCCGA
1 GGGGTTGGAGTATCCCCGA
4588021 TTGTGAAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.22
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGAGGAAAAAC
Done.