Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5794061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 68655 characters in sequence are not A, C, G, or T
File 32 of 38
Found at i:4889846 original size:13 final size:13
Alignment explanation
Indices: 4889828--4889852 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4889818 ACATTTGGTC
4889828 ATGTATCGATACA
1 ATGTATCGATACA
4889841 ATGTATCGATAC
1 ATGTATCGATAC
4889853 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4892987 original size:13 final size:13
Alignment explanation
Indices: 4892969--4892993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4892959 CAATTCAACA
4892969 TGTATCGATACAT
1 TGTATCGATACAT
4892982 TGTATCGATACA
1 TGTATCGATACA
4892994 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4892991 original size:33 final size:33
Alignment explanation
Indices: 4892949--4893013 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
4892939 TTAGAAGCAA
4892949 TGTATCGATACAAT-T-CAACATGTATCGATACAT
1 TGTATCGATACAATGTGC--CATGTATCGATACAT
4892982 TGTATCGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTGCCATGTATCGATACA
4893014 ATGTGCCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCGATACAT
Found at i:4893007 original size:20 final size:20
Alignment explanation
Indices: 4892982--4893034 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
4892972 ATCGATACAT
4892982 TGTATCGATACAATGTGCCA
1 TGTATCGATACAATGTGCCA
4893002 TGTATCGATACAATGTGCCA
1 TGTATCGATACAATGTGCCA
*
4893022 TTTATCGATACAA
1 TGTATCGATACAA
4893035 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAATGTGCCA
Found at i:4893088 original size:20 final size:20
Alignment explanation
Indices: 4893063--4893120 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
4893053 CTGCCAATTT
*
4893063 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGTA
*
4893083 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
*
4893102 CATGTATTGATAC-ATTGTA
1 CATGTATCGATACAATTGTA
4893121 ACGATACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 17 0.52
20 15 0.45
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:4894827 original size:19 final size:16
Alignment explanation
Indices: 4894786--4894830 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 16
4894776 CTTTTCAAGG
4894786 TGTATCGATACTGAAA
1 TGTATCGATACTGAAA
*
4894802 AGTATCGATACTATGAACA
1 TGTATCGATAC--TGAA-A
4894821 TGTATCGATA
1 TGTATCGATA
4894831 TAATGTATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 10 0.42
18 4 0.17
19 10 0.42
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (16 bp):
TGTATCGATACTGAAA
Found at i:4904153 original size:13 final size:13
Alignment explanation
Indices: 4904135--4904159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4904125 CAAAGATCAG
4904135 TGTATCGATACAA
1 TGTATCGATACAA
4904148 TGTATCGATACA
1 TGTATCGATACA
4904160 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4904241 original size:33 final size:33
Alignment explanation
Indices: 4904199--4904268 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
4904189 GGCAGTAGCT
4904199 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
4904232 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
4904265 TACA
1 TACA
4904269 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:4904242 original size:13 final size:13
Alignment explanation
Indices: 4904224--4904248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4904214 CAAAAAAATA
4904224 TGTATCGATACAT
1 TGTATCGATACAT
4904237 TGTATCGATACA
1 TGTATCGATACA
4904249 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4909462 original size:34 final size:33
Alignment explanation
Indices: 4909385--4909531 Score: 185
Period size: 31 Copynumber: 4.5 Consensus size: 33
4909375 TGATTGAGAA
* * *
4909385 GTTCTATTTTAGCCTTTGAAAAAGATAGGGATAAAG
1 GTTCTATCTTAGCCTGTG-AAAAGATA-GGA-AGAG
4909421 GTTCTATCTTAGCCTGTGAAAAGATAGGGAAGAG
1 GTTCTATCTTAGCCTGTGAAAAGATA-GGAAGAG
*
4909455 GTTCTATCTTAGCCTGTGAAAAGATA--AGGAG
1 GTTCTATCTTAGCCTGTGAAAAGATAGGAAGAG
4909486 GTTCTATCTTAGCCTGTGAAAAGATAGG--GAG
1 GTTCTATCTTAGCCTGTGAAAAGATAGGAAGAG
*
4909517 GTTCTATCTTTGCCT
1 GTTCTATCTTAGCCT
4909532 TTAAAAAACA
Statistics
Matches: 104, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
31 47 0.45
34 29 0.28
35 12 0.12
36 16 0.15
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (33 bp):
GTTCTATCTTAGCCTGTGAAAAGATAGGAAGAG
Found at i:4910666 original size:3 final size:3
Alignment explanation
Indices: 4910658--4910692 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4910648 CTAAGAGGAA
4910658 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
4910693 GCAAGAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:4916543 original size:21 final size:20
Alignment explanation
Indices: 4916504--4916543 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
4916494 ACATTGTTAA
*
4916504 GAGTAGTTGTATGTTCTTAG
1 GAGTAGTTGTATGTACTTAG
*
4916524 GAGTAGTATTTATGTACTTA
1 GAGTAGT-TGTATGTACTTA
4916544 ATTGCTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (20 bp):
GAGTAGTTGTATGTACTTAG
Found at i:4917478 original size:19 final size:20
Alignment explanation
Indices: 4917454--4917503 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
4917444 ATACCCAGAT
4917454 GTATCGATACAT-TTGCGTG
1 GTATCGATACATATTGCGTG
*
4917473 GTATCGATACATATTGCTTG
1 GTATCGATACATATTGCGTG
4917493 GTATCGATACA
1 GTATCGATACA
4917504 CTGTATCGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (20 bp):
GTATCGATACATATTGCGTG
Found at i:4917515 original size:33 final size:32
Alignment explanation
Indices: 4917473--4917536 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
4917463 CATTTGCGTG
4917473 GTATCGATACATATTGC-TTGGTATCGATACACT
1 GTATCGATACATATT-CATT-GTATCGATACACT
*
4917506 GTATCGATACATGTTCATTGTATCGATACAC
1 GTATCGATACATATTCATTGTATCGATACAC
4917537 CATAAAATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (32 bp):
GTATCGATACATATTCATTGTATCGATACACT
Found at i:4923964 original size:185 final size:185
Alignment explanation
Indices: 4923652--4924025 Score: 721
Period size: 185 Copynumber: 2.0 Consensus size: 185
4923642 ACCAGCTATC
4923652 AAAAGGCTTTCAAGTTTTTGAGCAAGATGCCTTGAAATTTTTACTAATTTTGAAACTTCAACACA
1 AAAAGGCTTTCAAGTTTTTGAGCAAGATGCCTTGAAATTTTTACTAATTTTGAAACTTCAACACA
* *
4923717 AAACCCTTATCAAGCGTTTGGGTTTTTATGCAAATCAGTAGAACAAGTTGCTTGTTTATGAATTT
66 AAACCCTTATCAAGCGTTTGGGTTTTTATGCAAATCAATAGAAAAAGTTGCTTGTTTATGAATTT
*
4923782 ATGCCTAGTAGTAGCTTGAACTATATAATTTTGAGAGTAAACTACCTAAAAAAGA
131 ATGCCTAATAGTAGCTTGAACTATATAATTTTGAGAGTAAACTACCTAAAAAAGA
4923837 AAAAGGCTTTCAAGTTTTTGAGCAAGATGCCTTGAAATTTTTACTAATTTTGAAACTTCAACACA
1 AAAAGGCTTTCAAGTTTTTGAGCAAGATGCCTTGAAATTTTTACTAATTTTGAAACTTCAACACA
4923902 AAACCCTTATCAAGCGTTTGGGTTTTTATGCAAATCAATAGAAAAAGTTGCTTGTTTATGAATTT
66 AAACCCTTATCAAGCGTTTGGGTTTTTATGCAAATCAATAGAAAAAGTTGCTTGTTTATGAATTT
4923967 ATGCCTAATAGTAGCTTGAACTATATAATTTTGAGAGTAAACTACCTAAAAAAGA
131 ATGCCTAATAGTAGCTTGAACTATATAATTTTGAGAGTAAACTACCTAAAAAAGA
4924022 AAAA
1 AAAA
4924026 AAACATTTTA
Statistics
Matches: 186, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 186 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (185 bp):
AAAAGGCTTTCAAGTTTTTGAGCAAGATGCCTTGAAATTTTTACTAATTTTGAAACTTCAACACA
AAACCCTTATCAAGCGTTTGGGTTTTTATGCAAATCAATAGAAAAAGTTGCTTGTTTATGAATTT
ATGCCTAATAGTAGCTTGAACTATATAATTTTGAGAGTAAACTACCTAAAAAAGA
Found at i:4924052 original size:14 final size:14
Alignment explanation
Indices: 4924035--4924082 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
4924025 AAAACATTTT
4924035 AAAAAGAAAAAGAA
1 AAAAAGAAAAAGAA
*
4924049 AAAAAG-AACA-AA
1 AAAAAGAAAAAGAA
*
4924061 AAAAGGAGAAAAGAA
1 AAAAAGA-AAAAGAA
4924076 AAAAAGA
1 AAAAAGA
4924083 GTAAGCTATC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
12 7 0.26
13 3 0.11
14 9 0.33
15 8 0.30
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAGAA
Found at i:4924063 original size:19 final size:18
Alignment explanation
Indices: 4924036--4924080 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
4924026 AAACATTTTA
4924036 AAAAGAAAAAGAAAAAAAG
1 AAAA-AAAAAGAAAAAAAG
* *
4924055 AACAAAAAAAGGAGAAAAG
1 AA-AAAAAAAGAAAAAAAG
4924074 AAAAAAA
1 AAAAAAA
4924081 GAGTAAGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 16 0.70
20 2 0.09
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAAG
Found at i:4924142 original size:22 final size:23
Alignment explanation
Indices: 4924094--4924142 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
4924084 TAAGCTATCT
* **
4924094 AAAAAAGAAAAAAAACCAACCCT
1 AAAAAAGAAAAAAAACCAAACAA
*
4924117 AAAAAAGAAAAAAAA-TAAACAA
1 AAAAAAGAAAAAAAACCAAACAA
4924139 AAAA
1 AAAA
4924143 TGACAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.80, C:0.12, G:0.04, T:0.04
Consensus pattern (23 bp):
AAAAAAGAAAAAAAACCAAACAA
Found at i:4925210 original size:18 final size:21
Alignment explanation
Indices: 4925189--4925240 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 21
4925179 ATATTTTTAT
4925189 TATATTTA-ATT-AT-AAAAA
1 TATATTTATATTAATAAAAAA
*
4925207 TATA-TAATATTAATAAAAAA
1 TATATTTATATTAATAAAAAA
4925227 TATATTT-T-TTAATA
1 TATATTTATATTAATA
4925241 TTTTCATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 2 0.07
18 7 0.25
19 8 0.29
20 10 0.36
21 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TATATTTATATTAATAAAAAA
Found at i:4926808 original size:96 final size:97
Alignment explanation
Indices: 4926644--4926855 Score: 309
Period size: 96 Copynumber: 2.2 Consensus size: 97
4926634 TTGAAAAACG
*
4926644 GGGTTGGAGTGTCCCCGATGATGACAATTTAAGTAAGAATAAAATTTAAACTTTGATGCATTTAA
1 GGGTTGAAGTGTCCCCGATGATGACAATTTAAGTAAGAATAAAATTTAAACTTTGATGCATTTAA
4926709 AAGCAGGGTTAGAGCATCCCCGCGGAGGAAT-
66 AAGCAGGGTTAGAGCATCCCCGCGGAGGAATA
* * * * **
4926740 GGGTTGAAGTGTCCCTGATGGTGACAATTTAAGTGAGAATAAGATTTAAACTTTGATGTGTTTAA
1 GGGTTGAAGTGTCCCCGATGATGACAATTTAAGTAAGAATAAAATTTAAACTTTGATGCATTTAA
* * * *
4926805 AAGCGGGGTTGGAGTATCCCCTCGGAGGAATA
66 AAGCAGGGTTAGAGCATCCCCGCGGAGGAATA
*
4926837 GGGTTGAAGTATCCCCGAT
1 GGGTTGAAGTGTCCCCGAT
4926856 AAATAAAATT
Statistics
Matches: 102, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
96 85 0.83
97 17 0.17
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (97 bp):
GGGTTGAAGTGTCCCCGATGATGACAATTTAAGTAAGAATAAAATTTAAACTTTGATGCATTTAA
AAGCAGGGTTAGAGCATCCCCGCGGAGGAATA
Found at i:4929068 original size:20 final size:20
Alignment explanation
Indices: 4929040--4929096 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
4929030 GTAAAAAGAC
4929040 AAAATGTATCGATACATTCA
1 AAAATGTATCGATACATTCA
* * *
4929060 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTCA
4929080 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
4929097 CTGGGTAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:4929915 original size:28 final size:28
Alignment explanation
Indices: 4929820--4931361 Score: 581
Period size: 28 Copynumber: 53.9 Consensus size: 28
4929810 GTTTAGAAGG
*
4929820 GATGCCATTGACTTGTGTGCACTTTAGAGAAA
1 GATGCCACTGACTTGTG-G-ACTTT-GA-AAA
* *
4929852 GTTGCCACCGACTTGTGTGGTA-TTT-AAAA
1 GATGCCACTGAC-T-TGTGG-ACTTTGAAAA
* * * *
4929881 GGATGCCACTGATTTATAGATTTTGAAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
** *
4929910 GATGCCTTTGACTTGTGGGCTTTGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* *
4929938 GATGCCACCGACTTGTGGGCTTTGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* *
4929966 GGATGCCACTGATTTGTGGACTTTGAAAG
1 -GATGCCACTGACTTGTGGACTTTGAAAA
*
4929995 GATGCCACTGACTTGTGGGCTTTGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4930023 GGTGCCATTGACTTGTGGGCTTTGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* *
4930051 GGATGCCATTGACTTGTGGACTTTGAAAT
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4930080 GATGCCACTGACTTGTGGGCATTGAAAG
1 GATGCCACTGACTTGTGGACTTTGAAAA
* * * *
4930108 GGTGCCACTAACTTATAGG-CTTTGAAAG
1 GATGCCACTGACTTGT-GGACTTTGAAAA
* * * *
4930136 GGTGCCACTGATTTGTGGGCTTGGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
*
4930164 GATGCCACTGACTTGTGGGCTTTGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
*
4930192 GATGCCA-TCAACTTGTGGGA-TTTGAAAA
1 GATGCCACT-GACTTGT-GGACTTTGAAAA
*
4930220 GAATGCCACCGACTTGTGGACTTTG-AAA
1 G-ATGCCACTGACTTGTGGACTTTGAAAA
*
4930248 GAATGCCACTGACTTGTGGGCTTT-AAAA
1 G-ATGCCACTGACTTGTGGACTTTGAAAA
* * *
4930276 GGGTGCCACTGATTTGTGGGCTTTGAAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4930305 GATGCTACCGACTTGTGGGCTTTGAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* **
4930333 GGATGCCACTGACTTGTGGAGTTTGAATG
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* *
4930362 GATGCCACTGACTTGTGGGCTTTGAAAG
1 GATGCCACTGACTTGTGGACTTTGAAAA
* * * *
4930390 GGTGCCACTGTCTTGTGGGCTTTGAAAG
1 GATGCCACTGACTTGTGGACTTTGAAAA
* * * *
4930418 GGTGCCACTGATTTGTGGGCTTTGAAATGG
1 GATGCCACTGACTTGTGGACTTTGAAA--A
* *
4930448 GTTGCCACTGACTTGTGTGGGCTTTGAAATA
1 GATGCCACTGAC-T-TGTGGACTTTGAAA-A
* ** * *
4930479 GGTTGCCACCAACTTGTGTGGGCTTTGAAATGG
1 -GATGCCACTGAC-T-TGTGGACTTTGAAA--A
* ** * *
4930512 GTTGCCACCAACTTGTATGGGCTTTCAAACGA
1 GATGCCACTGACTTG--TGGACTTTGAAA--A
* * *
4930544 GTTGCCACCGACTTGTGTGGGCTTTGAAATA
1 GATGCCACTGAC-T-TGTGGACTTTGAAA-A
* * *
4930575 -ATGCCACTAACTTGTGGGCTTTGAAATGG
1 GATGCCACTGACTTGTGGACTTTGAAA--A
* * * *
4930604 GTTGCCACCGACTTGTGTGGGCTTTGAGAAG
1 GATGCCACTGAC-T-TGTGGACTTTGA-AAA
* *
4930635 GATGCCACT-AGCTTGTGGGA-TTTCAAAG
1 GATGCCACTGA-CTTGT-GGACTTTGAAAA
* * *
4930663 GATGCCACTCACTTGTGGGCTTTGAAATGG
1 GATGCCACTGACTTGTGGACTTTGAAA--A
* * *
4930693 GTTACCACTGACTTGTGTGGGCTTT-AAAA
1 GATGCCACTGAC-T-TGTGGACTTTGAAAA
* * *
4930722 TGGGTTGCCACTGACTTGTATGGGCTTTCAAATGA
1 ---GATGCCACTGACTTG--TGGACTTTGAAA--A
* * ** *
4930757 GTTACCACCAACTTGTGTGGGCTTTGAAATA
1 GATGCCACTGAC-T-TGTGGACTTTGAAA-A
* * *
4930788 -ATGCCACTAACTTGTGGGC-TTAAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4930814 GGGATGCCACTAACTTGTAGG-CTTTGGAAG
1 --GATGCCACTGACTTGT-GGACTTTGAAAA
* * * * **
4930844 GGTACCACTAACTTGTGGGCTTAAAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
** * * * *
4930872 GATGCCACAAAGTTGTCGA-TTTTAGAAG
1 GATGCCACTGACTTGTGGACTTTGA-AAA
* * * *
4930900 GGTGCCACTAACTTGTGGGC-TTAAAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
*
4930927 GGATGCCAC-GAAGTTGTGGAC-TT-AAAA
1 -GATGCCACTG-ACTTGTGGACTTTGAAAA
* *
4930954 GGATGCCA-TGGAGTTATGGAC-TT-AAAA
1 -GATGCCACT-GACTTGTGGACTTTGAAAA
* * *
4930981 GAGTGTCAC-GAAGTGGTGGAC-TT-AAAA
1 GA-TGCCACTG-ACTTGTGGACTTTGAAAA
* * *
4931008 GGGTGCCACGGAGTTGTGGAC-TT-AAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* ** *
4931035 GAACGCCACAAAGTTGTGGAC-TTGAAACA
1 G-ATGCCACTGACTTGTGGACTTTGAAA-A
* **
4931064 GATGCCACAGGGTTGTGGAC-TT-AAAA
1 GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4931090 GGGTGCCACGGA---GTTG---TTGAAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4931113 GGATGCCACAGAGTTGTGAAC-TT-AAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4931140 GGATGCCACAGAGTGGTGGACTTT-AAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4931168 GGGTGCCAC-GAAGTTGTGGACTTT-AAAG
1 -GATGCCACTG-ACTTGTGGACTTTGAAAA
* * * *
4931196 GGTGCCAC-GAAGTTATGGAC-AT-AAAA
1 GATGCCACTG-ACTTGTGGACTTTGAAAA
* *
4931222 GGATGCCACAGAGTTGTGGACTTT-AAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* * *
4931250 GGGTGCCA-TGGAGTTATGGACTTT-AAAA
1 -GATGCCACT-GACTTGTGGACTTTGAAAA
* * * *
4931278 GGATACCACGGAGTTGTAGAC-TT-AAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* *
4931305 GGATGCCACGGACTTGTAGACTTTGAAAA
1 -GATGCCACTGACTTGTGGACTTTGAAAA
* *
4931334 GAAATGCCACTGAATCGTGGACTTTGAA
1 G--ATGCCACTGACTTGTGGACTTTGAA
4931362 GAGGTCACAG
Statistics
Matches: 1231, Mismatches: 190, Indels: 180
0.77 0.12 0.11
Matches are distributed among these distances:
22 2 0.00
23 14 0.01
24 3 0.00
26 12 0.01
27 195 0.16
28 581 0.47
29 136 0.11
30 90 0.07
31 19 0.02
32 160 0.13
33 10 0.01
34 8 0.01
35 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (28 bp):
GATGCCACTGACTTGTGGACTTTGAAAA
Found at i:4929977 original size:85 final size:85
Alignment explanation
Indices: 4929820--4930961 Score: 769
Period size: 85 Copynumber: 13.1 Consensus size: 85
4929810 GTTTAGAAGG
* * * * *
4929820 GATGCCATTGACTTGTGTGCACTTTAGAGAAAGTTGCCACCGACTTGTGTGG-TATTTAAAAGGA
1 GATGCCACTGACTTGTG-G-GCTTT-GA-AAAGATGCCACTGACTTGTG-GGCT-TTGAAAAGGA
* * * *
4929884 TGCCACTGATTTATAGATTTTGAAAA
60 TGCCACTGACTTGTGGACTTTGAAAA
** *
4929910 GATGCCTTTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCAC
1 GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCAC
* *
4929975 TGATTTGTGGACTTTGAAAG
66 TGACTTGTGGACTTTGAAAA
* * *
4929995 GATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCATTGACTTGTGGGCTTTGAAAAGGATGCCAT
1 GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCAC
*
4930060 TGACTTGTGGACTTTGAAAT
66 TGACTTGTGGACTTTGAAAA
* * * * * * *
4930080 GATGCCACTGACTTGTGGGCATTGAAAGGGTGCCACTAACTTATAGGCTTTG-AAAGGGTGCCAC
1 GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCAC
* * *
4930144 TGATTTGTGGGCTTGGAAAA
66 TGACTTGTGGACTTTGAAAA
* * *
4930164 GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCA-TCAACTTGTGGGATTTGAAAAGAATGCCA
1 GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACT-GACTTGTGGGCTTTGAAAAGGATGCCA
*
4930228 CCGACTTGTGGACTTTG-AAA
65 CTGACTTGTGGACTTTGAAAA
* * *
4930248 GAATGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTGATTTGTGGGCTTTGAAAA-GATGCT
1 G-ATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAAGGATGCC
* *
4930311 ACCGACTTGTGGGCTTTGAAAA
64 ACTGACTTGTGGACTTTGAAAA
** *
4930333 GGATGCCACTGACTTGTGGAG-TTTGAATGGATGCCACTGACTTGTGGGCTTTG-AAAGGGTGCC
1 -GATGCCACTGACTTGTGG-GCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCC
* * *
4930396 ACTGTCTTGTGGGCTTTGAAAG
64 ACTGACTTGTGGACTTTGAAAA
* * * * *
4930418 GGTGCCACTGATTTGTGGGCTTTGAAATGGGTTGCCACTGACTTGTGTGGGCTTTGAAATAGGTT
1 GATGCCACTGACTTGTGGGCTTTGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGAAA-AGGAT
** * *
4930483 GCCACCAACTTGTGTGGGCTTTGAAATGG
61 GCCACTGAC-T-TGTGGACTTTGAAA--A
* ** * * *
4930512 GTTGCCACCAACTTGTATGGGCTTTCAAACGAGTTGCCACCGACTTGTGTGGGCTTTGAAATA--
1 GATGCCACTGACTTG--TGGGCTTTGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGAAA-AGG
* * *
4930575 ATGCCACTAACTTGTGGGCTTTGAAATGG
59 ATGCCACTGACTTGTGGACTTTGAAA--A
* * * * *
4930604 GTTGCCACCGACTTGTGTGGGCTTTGAGAAGGATGCCACT-AGCTTGTGGGATTT-CAAAGGATG
1 GATGCCACTGAC-T-TGTGGGCTTTGA-AAAGATGCCACTGA-CTTGTGGGCTTTGAAAAGGATG
* * *
4930667 CCACTCACTTGTGGGCTTTGAAATGG
62 CCACTGACTTGTGGACTTTGAAA--A
* * * * *
4930693 GTTACCACTGACTTGTGTGGGCTTT-AAAATGGGTTGCCACTGACTTGTATGGGCTTTCAAATGA
1 GATGCCACTGAC-T-TGTGGGCTTTGAAAA---GATGCCACTGACTTG--TGGGCTTTGAAAAG-
* * ** *
4930757 GTTACCACCAACTTGTGTGGGCTTTGAAATA
58 GATGCCACTGAC-T-TGTGGACTTTGAAA-A
* * * * * * *
4930788 -ATGCCACTAACTTGTGGGC-TTAAAAAGGGATGCCACTAACTTGTAGGCTTTG-GAAGGGTACC
1 GATGCCACTGACTTGTGGGCTTTGAAAA--GATGCCACTGACTTGTGGGCTTTGAAAAGGATGCC
* * **
4930850 ACTAACTTGTGGGCTTAAAAAA
64 ACTGACTTGTGGACTTTGAAAA
** * * * * * * * *
4930872 GATGCCACAAAGTTGT-CGATTTTAGAAGGGTGCCACTAACTTGTGGGC-TTAAAAAGGATGCCA
1 GATGCCACTGACTTGTGGGCTTTGA-AAAGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCA
*
4930935 C-GAAGTTGTGGAC-TT-AAAA
65 CTG-ACTTGTGGACTTTGAAAA
4930954 GGATGCCA
1 -GATGCCA
4930962 TGGAGTTATG
Statistics
Matches: 881, Mismatches: 124, Indels: 101
0.80 0.11 0.09
Matches are distributed among these distances:
82 4 0.00
83 12 0.01
84 161 0.18
85 318 0.36
86 40 0.05
87 16 0.02
88 20 0.02
89 70 0.08
90 40 0.05
91 27 0.03
92 69 0.08
93 8 0.01
94 39 0.04
95 1 0.00
96 56 0.06
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (85 bp):
GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCAC
TGACTTGTGGACTTTGAAAA
Found at i:4930023 original size:113 final size:113
Alignment explanation
Indices: 4929854--4930935 Score: 797
Period size: 113 Copynumber: 9.3 Consensus size: 113
4929844 TAGAGAAAGT
* * * * * * ** **
4929854 TGCCACCGACTTGTGTGGTATTTAAAAGGATGCCACTGATTTATAGATTTTGAAAAGATGCCTTT
1 TGCCACTGACTTGTG-GG-CTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACT
*
4929919 GACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAAGGA
64 GACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGA
* * * *
4929969 TGCCACTGATTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCATTGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGA
* * *
4930034 CTTGTGGGCTTTGAAAAGGATGCCATTGACTTGTGGACTTTG-AAATGA
66 CTTGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAAGGA
* * * * * * *
4930082 TGCCACTGACTTGTGGGCATTGAAAGGGTGCCACTAACTTATAGGCTTTGAAAGGGTGCCACTGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGA
* *
4930147 TTTGTGGGCTTGGAAAAGATGCCACTGACTTGTGGGCTTTGAAAA-GA
66 CTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGA
* * * * *
4930194 TGCCA-TCAACTTGTGGGATTTGAAAAGAATGCCACCGACTTGTGGACTTTG-AAAGAATGCCAC
1 TGCCACT-GACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAAG-ATGCCAC
* *
4930257 TGACTTGTGGGCTTT-AAAAGGGTGCCACTGATTTGTGGGCTTTGAAAA-GA
63 TGACTTGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGAAAAGGA
* * **
4930307 TGCTACCGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGAG-TTTGAATGGATGCCACT
1 TGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGG-GCTTTGAAAAGATGCCACT
* * * *
4930371 GACTTGTGGGCTTTGAAAGGGTGCCACTGTCTTGTGGGCTTTG-AAAGGG
64 GACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGA
* * *
4930420 TGCCACTGATTTGTGGGCTTTGAAATGGGTTGCCACTGACTTGTGTGGGCTTTGAAATAGGTTGC
1 TGCCACTGACTTGTGGGCTTTGAAA--GGATGCCACTGAC-T-TGTGGGCTTTGAAA-A-GATGC
** * * ** * * *
4930485 CACCAACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTATGGGCTTTCAAACGAGT
60 CACTGAC-T-TGTGGGCTTTGAAA--AGATGCCACTGACTTG--TGGGCTTTGAAAAG-GA
* ** * * *
4930546 TGCCACCGACTTGTGTGGGCTTTGAAATAATGCCACTAACTTGTGGGCTTTGAAATGGGTTGCCA
1 TGCCACTGAC-T-TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA--AGATGCCA
* * * *
4930611 CCGACTTGTGTGGGCTTTGAGAAGGATGCCACT-AGCTTGTGGGATTT-CAAAGGA
62 CTGAC-T-TGTGGGCTTTGA-AAAGATGCCACTGA-CTTGTGGGCTTTGAAAAGGA
* * * *
4930665 TGCCACTCACTTGTGGGCTTTGAAATGGGTTACCACTGACTTGTGTGGGCTTT-AAAATGGGTTG
1 TGCCACTGACTTGTGGGCTTTGAAA--GGATGCCACTGAC-T-TGTGGGCTTTGAAAA---GATG
* * * **
4930729 CCACTGACTTGTATGGGCTTTCAAATGAGTTACCACCAACTTGTGTGGGCTTTGAAATA--A
59 CCACTGACTTG--TGGGCTTTGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGAAA-AGGA
* ** * * * * * * *
4930789 TGCCACTAACTTGTGGGCTTAAAAAGGGATGCCACTAACTTGTAGGCTTTGGAAGGGTACCACTA
1 TGCCACTGACTTGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTG
** ** * * * * * *
4930854 ACTTGTGGGCTTAAAAAAGATGCCACAAAGTTGT-CGATTTTAGAAGGG
65 ACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGA
* **
4930902 TGCCACTAACTTGTGGGCTTAAAAAGGATGCCAC
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCAC
4930936 GAAGTTGTGG
Statistics
Matches: 789, Mismatches: 128, Indels: 103
0.77 0.13 0.10
Matches are distributed among these distances:
111 2 0.00
112 69 0.09
113 337 0.43
114 40 0.05
115 24 0.03
116 11 0.01
117 24 0.03
118 10 0.01
119 32 0.04
120 24 0.03
121 46 0.06
122 23 0.03
123 25 0.03
124 80 0.10
125 8 0.01
126 19 0.02
127 1 0.00
128 14 0.02
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (113 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGA
CTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGA
Found at i:4930961 original size:27 final size:27
Alignment explanation
Indices: 4930856--4931314 Score: 389
Period size: 27 Copynumber: 16.9 Consensus size: 27
4930846 TACCACTAAC
* * *
4930856 TTGTGGGCTTAAAAAAGATGCCACAAAG
1 TTGTGGACTT-AAAAGGATGCCACGAAG
* * * * * *
4930884 TTGTCGATTTTAGAAGGGTGCCACTAAC
1 TTGTGGA-CTTAAAAGGATGCCACGAAG
*
4930912 TTGTGGGCTTAAAAAGGATGCCACGAAG
1 TTGTGGACTT-AAAAGGATGCCACGAAG
* *
4930940 TTGTGGACTTAAAAGGATGCCATGGAG
1 TTGTGGACTTAAAAGGATGCCACGAAG
* *
4930967 TTATGGACTTAAAA-GAGTGTCACGAAG
1 TTGTGGACTTAAAAGGA-TGCCACGAAG
* * *
4930994 TGGTGGACTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGATGCCACGAAG
* * *
4931021 TTGTGGACTTAAAAGAACGCCACAAAG
1 TTGTGGACTTAAAAGGATGCCACGAAG
*
4931048 TTGTGGACTTGAAACA-GATGCCAC-AGGG
1 TTGTGGACTT-AAA-AGGATGCCACGA-AG
* *
4931076 TTGTGGACTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGATGCCACGAAG
*
4931103 TTGT----TGAAAAGGATGCCAC-AGAG
1 TTGTGGACTTAAAAGGATGCCACGA-AG
*
4931126 TTGTGAACTTAAAAGGATGCCAC-AGAG
1 TTGTGGACTTAAAAGGATGCCACGA-AG
* *
4931153 TGGTGGACTTTAAAAGGGTGCCACGAAG
1 TTGTGGAC-TTAAAAGGATGCCACGAAG
* *
4931181 TTGTGGACTTTAAAGGGTGCCACGAAG
1 TTGTGGACTTAAAAGGATGCCACGAAG
* *
4931208 TTATGGACATAAAAGGATGCCAC-AGAG
1 TTGTGGACTTAAAAGGATGCCACGA-AG
* * *
4931235 TTGTGGACTTTAAAAGGGTGCCATGGAG
1 TTGTGGAC-TTAAAAGGATGCCACGAAG
* * *
4931263 TTATGGACTTTAAAAGGATACCACGGAG
1 TTGTGGAC-TTAAAAGGATGCCACGAAG
*
4931291 TTGTAGACTTAAAAGGATGCCACG
1 TTGTGGACTTAAAAGGATGCCACG
4931315 GACTTGTAGA
Statistics
Matches: 348, Mismatches: 64, Indels: 39
0.77 0.14 0.09
Matches are distributed among these distances:
23 19 0.05
26 4 0.01
27 189 0.54
28 132 0.38
29 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (27 bp):
TTGTGGACTTAAAAGGATGCCACGAAG
Found at i:4931101 original size:82 final size:81
Alignment explanation
Indices: 4930856--4931327 Score: 429
Period size: 82 Copynumber: 5.8 Consensus size: 81
4930846 TACCACTAAC
* * * * * * * * *
4930856 TTGTGGGCTTAAAAAAGATGCCACAAAGTTGTCGATTTTAGAAGGGTGCCACTA-ACTTGTGGGC
1 TTGTGGACTT-AAAAGGATGCCACAAAGTTATGGA-CTTAAAAGGATGCCAC-AGAGTTGTGGAC
* *
4930920 TTAAAAAGGATGCCACGAAG
63 TT-AAAAGGGTGCCACGGAG
*** * *
4930940 TTGTGGACTTAAAAGGATGCCATGGAGTTATGGACTTAAAA-GAGTGTCAC-GAAGTGGTGGACT
1 TTGTGGACTTAAAAGGATGCCACAAAGTTATGGACTTAAAAGGA-TGCCACAG-AGTTGTGGACT
4931003 TAAAAGGGTGCCACGGAG
64 TAAAAGGGTGCCACGGAG
* * * *
4931021 TTGTGGACTTAAAAGAACGCCACAAAGTTGTGGACTTGAAACA-GATGCCACAGGGTTGTGGACT
1 TTGTGGACTTAAAAGGATGCCACAAAGTTATGGACTT-AAA-AGGATGCCACAGAGTTGTGGACT
4931085 TAAAAGGGTGCCACGGAG
64 TAAAAGGGTGCCACGGAG
* * * * *
4931103 TTGT----TGAAAAGGATGCCACAGAGTTGTGAACTTAAAAGGATGCCACAGAGTGGTGGACTTT
1 TTGTGGACTTAAAAGGATGCCACAAAGTTATGGACTTAAAAGGATGCCACAGAGTTGTGGAC-TT
*
4931164 AAAAGGGTGCCACGAAG
65 AAAAGGGTGCCACGGAG
* * * *
4931181 TTGTGGACTTTAAAGGGTGCCACGAAGTTATGGACATAAAAGGATGCCACAGAGTTGTGGACTTT
1 TTGTGGACTTAAAAGGATGCCACAAAGTTATGGACTTAAAAGGATGCCACAGAGTTGTGGAC-TT
*
4931246 AAAAGGGTGCCATGGAG
65 AAAAGGGTGCCACGGAG
* * ** * * * * *
4931263 TTATGGACTTTAAAAGGATACCACGGAGTTGTAGACTTAAAAGGATGCCACGGACTTGTAGACTT
1 TTGTGGAC-TTAAAAGGATGCCACAAAGTTATGGACTTAAAAGGATGCCACAGAGTTGTGGACTT
4931328 TGAAAAGAAA
Statistics
Matches: 320, Mismatches: 55, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
76 1 0.00
77 21 0.07
78 46 0.14
81 47 0.15
82 130 0.41
83 66 0.21
84 9 0.03
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.24
Consensus pattern (81 bp):
TTGTGGACTTAAAAGGATGCCACAAAGTTATGGACTTAAAAGGATGCCACAGAGTTGTGGACTTA
AAAGGGTGCCACGGAG
Found at i:4931119 original size:23 final size:23
Alignment explanation
Indices: 4931086--4931153 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 23
4931076 TTGTGGACTT
* *
4931086 AAAAGGGTGCCACGGAGTTGTTG
1 AAAAGGATGCCACAGAGTTGTTG
*
4931109 AAAAGGATGCCACAGAGTTGTGAACTT
1 AAAAGGATGCCACAGAGTTGT----TG
4931136 AAAAGGATGCCACAGAGT
1 AAAAGGATGCCACAGAGT
4931154 GGTGGACTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 19 0.50
27 19 0.50
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (23 bp):
AAAAGGATGCCACAGAGTTGTTG
Found at i:4931315 original size:27 final size:27
Alignment explanation
Indices: 4930912--4931327 Score: 414
Period size: 27 Copynumber: 15.4 Consensus size: 27
4930902 TGCCACTAAC
* *
4930912 TTGTGGGCTTAAAAAGGATGCCACGAAG
1 TTGTGGACTT-AAAAGGATGCCACGGAG
*
4930940 TTGTGGACTTAAAAGGATGCCATGGAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* * *
4930967 TTATGGACTTAAAA-GAGTGTCACGAAG
1 TTGTGGACTTAAAAGGA-TGCCACGGAG
* *
4930994 TGGTGGACTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* * **
4931021 TTGTGGACTTAAAAGAACGCCACAAAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
4931048 TTGTGGACTTGAAACA-GATGCCACAGG-G
1 TTGTGGACTT-AAA-AGGATGCCAC-GGAG
*
4931076 TTGTGGACTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* *
4931103 TTGT----TGAAAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* *
4931126 TTGTGAACTTAAAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* * *
4931153 TGGTGGACTTTAAAAGGGTGCCACGAAG
1 TTGTGGAC-TTAAAAGGATGCCACGGAG
* * *
4931181 TTGTGGACTTTAAAGGGTGCCACGAAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* * *
4931208 TTATGGACATAAAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGATGCCACGGAG
* *
4931235 TTGTGGACTTTAAAAGGGTGCCATGGAG
1 TTGTGGAC-TTAAAAGGATGCCACGGAG
* *
4931263 TTATGGACTTTAAAAGGATACCACGGAG
1 TTGTGGAC-TTAAAAGGATGCCACGGAG
* *
4931291 TTGTAGACTTAAAAGGATGCCACGGAC
1 TTGTGGACTTAAAAGGATGCCACGGAG
*
4931318 TTGTAGACTT
1 TTGTGGACTT
4931328 TGAAAAGAAA
Statistics
Matches: 322, Mismatches: 53, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
23 20 0.06
26 5 0.02
27 198 0.61
28 98 0.30
29 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.23
Consensus pattern (27 bp):
TTGTGGACTTAAAAGGATGCCACGGAG
Found at i:4931328 original size:55 final size:55
Alignment explanation
Indices: 4930856--4931357 Score: 425
Period size: 55 Copynumber: 9.2 Consensus size: 55
4930846 TACCACTAAC
* * * * * * * ** *
4930856 TTGTGGGCTTAAAAAAGATGCCACAAAGTTGTCGATTTTAGAAGGGTGCCACTAAC
1 TTGTGGACTT-AAAAGGATGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
* *
4930912 TTGTGGGCTTAAAAAGGATGCCACGAAGTTGTGGAC-TTAAAAGGATGCCATGGAG
1 TTGTGGACTT-AAAAGGATGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
* * * *
4930967 TTATGGACTTAAAA-GAGTGTCACGAAGTGGTGGAC-TTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGA-TGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
* * * *
4931021 TTGTGGACTTAAAAGAACGCCACAAAGTTGTGGACTTGAAACA-GATGCCACAGG-G
1 TTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTTAAA-AGGATGCCAC-GGAG
* * * *
4931076 TTGTGGACTTAAAAGGGTGCCACGGAG-T-T-G--TTGAAAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
* * * *
4931126 TTGTGAACTTAAAAGGATGCCAC-AGAGTGGTGGACTTTAAAAGGGTGCCACGAAG
1 TTGTGGACTTAAAAGGATGCCACGA-AGTTGTGGACTTTAAAAGGATGCCACGGAG
* * * * *
4931181 TTGTGGACTTTAAAGGGTGCCACGAAGTTATGGAC-ATAAAAGGATGCCACAGAG
1 TTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
* * * * *
4931235 TTGTGGACTTTAAAAGGGTGCCATGGAGTTATGGACTTTAAAAGGATACCACGGAG
1 TTGTGGAC-TTAAAAGGATGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
* * * * * * *
4931291 TTGTAGACTTAAAAGGATGCCACGGACTTGTAGACTTTGAAAAGAAATGCCACTGAA
1 TTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTT-AAAAG-GATGCCACGGAG
*
4931348 TCGTGGACTT
1 TTGTGGACTT
4931358 TGAAGAGGTC
Statistics
Matches: 363, Mismatches: 65, Indels: 35
0.78 0.14 0.08
Matches are distributed among these distances:
49 2 0.01
50 38 0.10
52 2 0.01
53 4 0.01
54 88 0.24
55 149 0.41
56 64 0.18
57 16 0.04
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (55 bp):
TTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTTAAAAGGATGCCACGGAG
Found at i:4932650 original size:19 final size:18
Alignment explanation
Indices: 4932603--4932651 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
4932593 TTTTTTTGGA
* *
4932603 TTTTTGTTGTTCTCTTTT
1 TTTTTGTTTTTCACTTTT
*
4932621 TTTTTGCTTTTACACTTTT
1 TTTTTG-TTTTTCACTTTT
4932640 TTTTTGTTTTTC
1 TTTTTGTTTTTC
4932652 TTTTCATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.04, C:0.12, G:0.08, T:0.76
Consensus pattern (18 bp):
TTTTTGTTTTTCACTTTT
Found at i:4942779 original size:31 final size:31
Alignment explanation
Indices: 4942719--4942780 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
4942709 AATCTTTTTC
* * *
4942719 CTTCTTCAAAGTCCATGATTTAGTAGCATCT
1 CTTCTTAAAAGTCCATGACTCAGTAGCATCT
*
4942750 CTTCTTAAAAGTCCATGACTCAGTGGCATCT
1 CTTCTTAAAAGTCCATGACTCAGTAGCATCT
4942781 TTTTTTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (31 bp):
CTTCTTAAAAGTCCATGACTCAGTAGCATCT
Found at i:4942830 original size:30 final size:31
Alignment explanation
Indices: 4942723--4943105 Score: 221
Period size: 30 Copynumber: 12.4 Consensus size: 31
4942713 TTTTTCCTTC
* * * *
4942723 TTCAAAGTCCATGATTTAGTAGCATCTCTTC
1 TTCAAAGTCCACGACTTAGTGGCATCTCTTT
* * * *
4942754 TTAAAAGTCCATGACTCAGTGGCATCTTTTTTT
1 TTCAAAGTCCACGACTTAGTGGCATC--TCTTT
* *
4942787 TTCTAAGTTCACGACTTAGTGGCATC-CTTT
1 TTCAAAGTCCACGACTTAGTGGCATCTCTTT
* *
4942817 TTCAAAGTCCACGACTTAATGGCATCTTTTTT
1 TTCAAAGTCCACGACTTAGTGGCATC-TCTTT
* * *
4942849 TTCCTAAGCCCACGACTTAGTGGCATC-CTTC
1 TT-CAAAGTCCACGACTTAGTGGCATCTCTTT
* * * *
4942880 TTCGAAGTCCACGACTCAATGGCATCTTTTTTTT
1 TTCAAAGTCCACGACTTAGTGGCATC---TCTTT
* * ** * * *
4942914 TTCTAAGTTCGTGACTCAGTGGTATC-CTTC
1 TTCAAAGTCCACGACTTAGTGGCATCTCTTT
* * *
4942944 TTCAAAGTCCACAACCTAGTGGCATCTTTTTT
1 TTCAAAGTCCACGACTTAGTGGCATC-TCTTT
* * * *
4942976 TTCTAAGTCTATGACTTAGTAGCA--TC---
1 TTCAAAGTCCACGACTTAGTGGCATCTCTTT
* * **
4943002 TTCAAAGTCCACAACTTAGTGGCATCACTCC
1 TTCAAAGTCCACGACTTAGTGGCATCTCTTT
* *
4943033 TTCAAAG-CCATGACTTAGTGGCATCTTTTTT
1 TTCAAAGTCCACGACTTAGTGGCATC-TCTTT
* * *
4943064 TTCTAAGTCCACAACCTAGTGGCA--TCTTT
1 TTCAAAGTCCACGACTTAGTGGCATCTCTTT
4943093 TTCAAAAGTCCAC
1 TTC-AAAGTCCAC
4943106 AGCTCCATGG
Statistics
Matches: 263, Mismatches: 70, Indels: 39
0.71 0.19 0.10
Matches are distributed among these distances:
26 19 0.07
28 1 0.00
29 8 0.03
30 90 0.34
31 40 0.15
32 38 0.14
33 45 0.17
34 22 0.08
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (31 bp):
TTCAAAGTCCACGACTTAGTGGCATCTCTTT
Found at i:4942840 original size:63 final size:63
Alignment explanation
Indices: 4942738--4943027 Score: 322
Period size: 63 Copynumber: 4.7 Consensus size: 63
4942728 AGTCCATGAT
* * * *
4942738 TTAGTAGCATCTCTTCTTAAAAGTCCATGACTCAGTGGCATCTTTTTTTTTCTAAGTTCACGAC
1 TTAGTGGCATC-CTTCTTCAAAGTCCACGACTTAGTGGCATCTTTTTTTTTCTAAGTTCACGAC
* * * **
4942802 TTAGTGGCATCCTTTTTCAAAGTCCACGACTTAATGGCATCTTTTTTTTCCTAAGCCCACGAC
1 TTAGTGGCATCCTTCTTCAAAGTCCACGACTTAGTGGCATCTTTTTTTTTCTAAGTTCACGAC
* * * **
4942865 TTAGTGGCATCCTTCTTCGAAGTCCACGACTCAATGGCATCTTTTTTTTTTCTAAGTTCGTGAC
1 TTAGTGGCATCCTTCTTCAAAGTCCACGACTTAGTGGCATC-TTTTTTTTTCTAAGTTCACGAC
* * * * *
4942929 TCAGTGGTATCCTTCTTCAAAGTCCACAACCTAGTGGCATC-TTTTTTTTCTAAG-TCTATGAC
1 TTAGTGGCATCCTTCTTCAAAGTCCACGACTTAGTGGCATCTTTTTTTTTCTAAGTTC-ACGAC
* *
4942991 TTAGTAGCA----TCTTCAAAGTCCACAACTTAGTGGCATC
1 TTAGTGGCATCCTTCTTCAAAGTCCACGACTTAGTGGCATC
4943028 ACTCCTTCAA
Statistics
Matches: 195, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
58 27 0.14
61 2 0.01
62 23 0.12
63 82 0.42
64 61 0.31
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (63 bp):
TTAGTGGCATCCTTCTTCAAAGTCCACGACTTAGTGGCATCTTTTTTTTTCTAAGTTCACGAC
Found at i:4942941 original size:127 final size:126
Alignment explanation
Indices: 4942738--4943002 Score: 361
Period size: 127 Copynumber: 2.1 Consensus size: 126
4942728 AGTCCATGAT
* *
4942738 TTAGTAGCATCTCTTCTTAAAAGTCCATGACTCAGTGGCATCTTTTTTTTTCTAAGTTCACGACT
1 TTAGTAGCATCTCTTCTTAAAAGTCCACGACTCAATGGCATCTTTTTTTTTCTAAGTTCACGACT
* * * *
4942803 TAGTGGCATCCTTTTTCAAAGTCCACGACTTAATGGCATCTTTTTTTTCCTAAGCCCACGAC
66 CAGTGGCATCCTTCTTCAAAGTCCACAACCTAATGGCATCTTTTTTTT-CTAAGCCCACGAC
* ** **
4942865 TTAGTGGCATC-CTTCTTCGAAGTCCACGACTCAATGGCATCTTTTTTTTTTCTAAGTTCGTGAC
1 TTAGTAGCATCTCTTCTTAAAAGTCCACGACTCAATGGCATC-TTTTTTTTTCTAAGTTCACGAC
* * * * *
4942929 TCAGTGGTATCCTTCTTCAAAGTCCACAACCTAGTGGCATCTTTTTTTTCTAAGTCTATGAC
65 TCAGTGGCATCCTTCTTCAAAGTCCACAACCTAATGGCATCTTTTTTTTCTAAGCCCACGAC
4942991 TTAGTAGCATCT
1 TTAGTAGCATCT
4943003 TCAAAGTCCA
Statistics
Matches: 119, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
126 46 0.39
127 73 0.61
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (126 bp):
TTAGTAGCATCTCTTCTTAAAAGTCCACGACTCAATGGCATCTTTTTTTTTCTAAGTTCACGACT
CAGTGGCATCCTTCTTCAAAGTCCACAACCTAATGGCATCTTTTTTTTCTAAGCCCACGAC
Found at i:4943136 original size:27 final size:27
Alignment explanation
Indices: 4943098--4943160 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
4943088 TCTTTTTCAA
* *
4943098 AAGTCCACAGCTCCATGGCACCTTTTT
1 AAGTCCACAGCTCCATGGAACCCTTTT
*
4943125 AAGTCCACAGCTCTATGGAACCCTTTT
1 AAGTCCACAGCTCCATGGAACCCTTTT
4943152 AAGTCCACA
1 AAGTCCACA
4943161 ACACCGTGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (27 bp):
AAGTCCACAGCTCCATGGAACCCTTTT
Found at i:4943225 original size:32 final size:32
Alignment explanation
Indices: 4943185--4943914 Score: 500
Period size: 32 Copynumber: 22.5 Consensus size: 32
4943175 TTTTCTTCTC
* *
4943185 AAAGCCCACACAAGTCGGTGGCAACCATTCCC
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* * *
4943217 AAAGCCCACACTAGTTGATGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
** * *
4943250 AAAGTGCATACAAGTCGGTGGCAACCCTT-TT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* *
4943281 CAAAGCCCACATAAGTCGATGGCAACCCTT-CT
1 -AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* * *
4943313 CAAAGTCCACATAAGTCGATGGCAA-CC-TCTCT
1 -AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
* * *
4943345 CAAAGTCCACACAAGTTGGTGGCAA-CCTTTCT
1 -AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* *
4943377 CAAAGCCCACACAAGTTGGTGTCAACCCTT-CT
1 -AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* * *
4943409 AAAGCCCACATAAGTCGATGCCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
* * * *
4943442 AAAGCCCACACAAGTTGATGCCAACCCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
* * * *
4943475 AAAGCTCACACAAGTTGGTGGCAA-TCTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* *
4943506 AAAGCCCACATAAGTCGGTGGCAA-CCTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* ** *
4943537 AAAGCCCACATAAGTCGGTGGCAACATTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
** *
4943569 AAAGCCCACACAAGTCAATGGCAACCCCCTT-CA
1 AAAGCCCACACAAGTCGGTGGCAA--CCCTTCCT
* * *
4943602 AAAGCCCACACAAGTTGGTGACAACCCTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* *
4943634 AAAGCCTACACAAGTCGGTGGTAACCC-T-CT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* *
4943664 CAAAGCCTACACAAGTCAGTGGCAACCCTTCTCT
1 -AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
* * *
4943698 AAAGCCCACATAAGTTAGTGGAACCTGTGGCAA-CCTTTCT
1 AAAGCCCACA-CA---AGT-----CGGTGGCAACCCTTCCT
*** * * *
4943738 AAAGCCTTTACAAGTCAGTGACAACCTTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
** * *
4943771 AAAGCCCACACAAGTTAGTGGAAACCCTT-TT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
** * *
4943802 AAAGCCCACACAAGTTAGTAGCAACCCTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
* * *
4943834 ATAGCCCACACAAGTCGGTGGAAACCCCCTT-CG
1 AAAGCCCACACAAGTCGGTGGCAA--CCCTTCCT
* * *
4943867 AAAGCTCACACAAGCCGGTGGCAA-CCTTCTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-CT
*
4943899 AAAGCCCACAAAAGTC
1 AAAGCCCACACAAGTC
4943915 AATGGCATCT
Statistics
Matches: 568, Mismatches: 98, Indels: 64
0.78 0.13 0.09
Matches are distributed among these distances:
30 7 0.01
31 146 0.26
32 219 0.39
33 157 0.28
34 11 0.02
36 3 0.01
37 3 0.01
39 1 0.00
40 9 0.02
41 4 0.01
42 8 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCCT
Found at i:4943355 original size:64 final size:64
Alignment explanation
Indices: 4943179--4943914 Score: 557
Period size: 64 Copynumber: 11.4 Consensus size: 64
4943169 GCATATTTTT
* * * *
4943179 CTTCTC-AAAGCCCACACAAGTCGGTGGCAACCATTCCCAAAGCCCACACTAGTTGATGGCAACC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACC-CTCTCAAAGCCCACACAAGTCGATGGCAACC
** * * *
4943243 CTTCTCTAAAGTGCATACAAGTCGGTGGCAACCCTTTTCAAAGCCCACATAAGTCGATGGCAACC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCC-TCTCAAAGCCCACACAAGTCGATGGCAACC
* * * * * *
4943308 CTTCTC-AAAGTCCACATAAGTCGATGGCAACCTCTCTCAAAGTCCACACAAGTTGGTGGCAACC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACC-CTCTCAAAGCCCACACAAGTCGATGGCAACC
* * * * *
4943372 TTTCTC-AAAGCCCACACAAGTTGGTGTCAACCCT-TCTAAAGCCCACATAAGTCGATGCCAACC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTC-AAAGCCCACACAAGTCGATGGCAACC
* * * * * * *
4943435 CTTCTCTAAAGCCCACACAAGTTGATGCCAACCCTTCTTTAAAGCTCACACAAGTTGGTGGCAA-
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCC-TC-TCAAAGCCCACACAAGTCGATGGCAAC
*
4943499 T
64 C
* * * *
4943500 CTT-TCTAAAGCCCACATAAGTCGGTGGCAA-CCTTTCTAAAGCCCACATAAGTCGGTGGCAA-C
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTC-AAAGCCCACACAAGTCGATGGCAACC
* * ** * * * *
4943562 ATTTTCTAAAGCCCACACAAGTCAATGGCAACCCCCTTCAAAAGCCCACACAAGTTGGTGACAAC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTC-TC-AAAGCCCACACAAGTCGATGGCAAC
4943627 C
64 C
* * *
4943628 CTT-TCTAAAGCCTACACAAGTCGGTGGTAACCCTCTCAAAGCCTACACAAGTC-AGTGGCAACC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCAAAGCCCACACAAGTCGA-TGGCAACC
* * * ***
4943691 CTTCTCTAAAGCCCACATAAGTTAGTGGAACCTGTGGCAA-CCTTTCTAAAGCCTTTACAAGTC-
1 CTTCTCTAAAGCCCACA-CA---AGT-----CGGTGGCAACCCTCTC-AAAGCCCACACAAGTCG
*
4943754 AGTGACAACC
56 A-TGGCAACC
* ** * * * * *
4943764 TTTCTCTAAAGCCCACACAAGTTAGTGGAAACCCTTTTAAAGCCCACACAAGT-TAGTAGCAACC
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCAAAGCCCACACAAGTCGA-TGGCAACC
* * * * * *
4943828 CTT-TCTATAGCCCACACAAGTCGGTGGAAACCCCCTTCGAAAGCTCACACAAGCCGGTGGCAA-
1 CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTC-TC-AAAGCCCACACAAGTCGATGGCAAC
4943891 C
64 C
* *
4943892 CTTCTCAAAAGCCCACAAAAGTC
1 CTTCTCTAAAGCCCACACAAGTC
4943915 AATGGCATCT
Statistics
Matches: 538, Mismatches: 103, Indels: 61
0.77 0.15 0.09
Matches are distributed among these distances:
61 1 0.00
62 26 0.05
63 105 0.20
64 176 0.33
65 149 0.28
66 22 0.04
67 1 0.00
68 3 0.01
69 3 0.01
72 6 0.01
73 46 0.09
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (64 bp):
CTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCAAAGCCCACACAAGTCGATGGCAACC
Found at i:4943403 original size:96 final size:96
Alignment explanation
Indices: 4943180--4943937 Score: 603
Period size: 96 Copynumber: 7.8 Consensus size: 96
4943170 CATATTTTTC
* * *
4943180 TTCTCAAAGCCCACACAAGTCGGTGGCAACCATTCCCAAAGCCCACACT-AGTTGATGGCAACCC
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACA-TAAGTCGATGGCAACCC
** *
4943244 TTCTCTAAAGTGCATACAAGTCGGTGGCAACCCT
65 -TCTCTAAAGCCCACACAAGTCGGTGGCAA-CCT
* * *
4943278 TT-TCAAAGCCCACATAAGTCGATGGCAACCCTTCTCAAAGTCCACATAAGTCGATGGCAA-CCT
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACATAAGTCGATGGCAACCCT
* *
4943341 CTCTCAAAGTCCACACAAGTTGGTGGCAACCT
66 CTCT-AAAGCCCACACAAGTCGGTGGCAACCT
* * *
4943373 TTCTCAAAGCCCACACAAGTTGGTGTCAACCCTTCT-AAAGCCCACATAAGTCGATGCCAACCCT
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACATAAGTCGATGGCAACCC-
* * * *
4943437 TCTCTAAAGCCCACACAAGTTGATGCCAACCC
65 TCTCTAAAGCCCACACAAGTCGGTGGCAACCT
* * * * * *
4943469 TTCTTTAAAGCTCACACAAGTTGGTGGCAATCTTTCT-AAAGCCCACATAAGTCGGTGGCAA-CC
1 TTC-TCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACATAAGTCGATGGCAACCC
* * *
4943532 TTTCTAAAGCCCACATAAGTCGGTGGCAACAT
65 TCTCTAAAGCCCACACAAGTCGGTGGCAACCT
** * * * * *
4943564 TT-TCTAAAGCCCACACAAGTCAATGGCAACCCCCTTC-AAAAGCCCACACAAGTTGGTGACAAC
1 TTCTC-AAAGCCCACACAAGTCGGTGGCAA--CCCTTCTCAAAGCCCACATAAGTCGATGGCAAC
* * *
4943627 CCTTTCTAAAGCCTACACAAGTCGGTGGTAACC-
63 CCTCTCTAAAGCCCACACAAGTCGGTGGCAACCT
* * * *
4943660 CTCTCAAAGCCTACACAAGTCAGTGGCAACCCTTCTCTAAAGCCCACATAAGTTAGTGGAACCTG
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACAT-A---AGTCG-A----
* *** * *
4943725 TGGCAA-CCTTTCTAAAGCCTTTACAAGTCAGTGACAACCT
56 TGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAACCT
** * * * * *
4943765 TTCTCTAAAGCCCACACAAGTTAGTGGAAACCCTT-TTAAAGCCCACACAAGT-TAGTAGCAACC
1 TTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACATAAGTCGA-TGGCAACC
* * * *
4943828 CTTTCTATAGCCCACACAAGTCGGTGGAAACCCCC
64 CTCTCTAAAGCCCACACAAGTCGGTGGCAA--CCT
* * * * * *
4943863 TTC-GAAAGCTCACACAAGCCGGTGGCAA-CCTTCTCAAAAGCCCACAAAAGTCAATGGCATCTC
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACATAAGTCGATGGCAAC-C
4943926 CT-TCT-AAGCCCA
64 CTCTCTAAAGCCCA
4943938 ATGTCGTTGG
Statistics
Matches: 540, Mismatches: 88, Indels: 66
0.78 0.13 0.10
Matches are distributed among these distances:
93 1 0.00
94 26 0.05
95 69 0.13
96 191 0.35
97 159 0.29
98 12 0.02
100 7 0.01
103 1 0.00
104 38 0.07
105 10 0.02
106 26 0.05
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (96 bp):
TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACATAAGTCGATGGCAACCCT
CTCTAAAGCCCACACAAGTCGGTGGCAACCT
Found at i:4943807 original size:104 final size:104
Alignment explanation
Indices: 4943627--4943820 Score: 266
Period size: 104 Copynumber: 1.9 Consensus size: 104
4943617 TGGTGACAAC
* ** * *
4943627 CCTTTCTAAAGCCTACACAAGTCGGTGGTAACCCTCTCAAAGCCTACACAAGTCAGTGGCAACCC
1 CCTTTCTAAAGCCTACACAAGTCAGTGACAACCCTCTCAAAGCCCACACAAGTCAGTGGAAACCC
*
4943692 TTCTCTAAAGCCCACATAAGTTAGTGGAACCTGTGGCAA
66 TTCTCTAAAGCCCACACAAGTTAGTGGAACCTGTGGCAA
** * *
4943731 CCTTTCTAAAGCCTTTACAAGTCAGTGACAACCTTTCTCTAAAGCCCACACAAGTTAGTGGAAAC
1 CCTTTCTAAAGCCTACACAAGTCAGTGACAACC-CTCTC-AAAGCCCACACAAGTCAGTGGAAAC
4943796 CCTT-T-TAAAGCCCACACAAGTTAGT
64 CCTTCTCTAAAGCCCACACAAGTTAGT
4943821 AGCAACCCTT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
104 47 0.60
105 5 0.06
106 26 0.33
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (104 bp):
CCTTTCTAAAGCCTACACAAGTCAGTGACAACCCTCTCAAAGCCCACACAAGTCAGTGGAAACCC
TTCTCTAAAGCCCACACAAGTTAGTGGAACCTGTGGCAA
Found at i:4943877 original size:65 final size:64
Alignment explanation
Indices: 4943759--4943915 Score: 165
Period size: 65 Copynumber: 2.5 Consensus size: 64
4943749 AAGTCAGTGA
* * **
4943759 CAACCTTTCTCTAAAGCCCACACAAGTTAGTGGAAACCCTTTTAAAGCCCACACAAGTTAGTAG
1 CAACCCTTCTCTAAAGCCCACACAAGTCAGTGGAAACCCTTCGAAAGCCCACACAAGTTAGTAG
* * * *** *
4943823 CAACCCTT-TCTATAGCCCACACAAGTCGGTGGAAACCCCCTTCGAAAGCTCACACAAGCCGGTG
1 CAACCCTTCTCTAAAGCCCACACAAGTCAGTGGAAA--CCCTTCGAAAGCCCACACAAGTTAGTA
4943887 G
64 G
* *
4943888 CAA-CCTTCTCAAAAGCCCACAAAAGTCA
1 CAACCCTTCTCTAAAGCCCACACAAGTCA
4943916 ATGGCATCTC
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
63 24 0.32
64 11 0.15
65 40 0.53
ACGTcount: A:0.33, C:0.32, G:0.15, T:0.19
Consensus pattern (64 bp):
CAACCCTTCTCTAAAGCCCACACAAGTCAGTGGAAACCCTTCGAAAGCCCACACAAGTTAGTAG
Found at i:4946084 original size:19 final size:20
Alignment explanation
Indices: 4946060--4946098 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
4946050 TTGGGCACAC
4946060 AAATAA-CCTCAAATC-ATCA
1 AAATAATCCT-AAATCTATCA
4946079 AAATAATCCTAAATCTATCA
1 AAATAATCCTAAATCTATCA
4946099 CATCCAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAATCCTAAATCTATCA
Found at i:4946957 original size:32 final size:33
Alignment explanation
Indices: 4946920--4946982 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
4946910 AAAATCTCAG
*
4946920 ATGTATCGATACAATGA-TAATGTATAGATATA
1 ATGTATCGATACAATCATTAATGTATAGATATA
* *
4946952 ATGTATCGATACATTCATTAATGTATTGATA
1 ATGTATCGATACAATCATTAATGTATAGATA
4946983 CATTTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (33 bp):
ATGTATCGATACAATCATTAATGTATAGATATA
Found at i:4947073 original size:21 final size:21
Alignment explanation
Indices: 4947048--4947118 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
4947038 AACTTATGTC
4947048 TCAATACATTTACTATTTGTA
1 TCAATACATTTACTATTTGTA
* *
4947069 TCAATATATTTACTGTTTGTA
1 TCAATACATTTACTATTTGTA
*
4947090 TCGATACATTTACTATTTGTA
1 TCAATACATTTACTATTTGTA
4947111 TCAATACA
1 TCAATACA
4947119 AATTGTAGAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (21 bp):
TCAATACATTTACTATTTGTA
Found at i:4947633 original size:52 final size:52
Alignment explanation
Indices: 4947523--4947660 Score: 233
Period size: 52 Copynumber: 2.7 Consensus size: 52
4947513 TCCGATGTCA
4947523 CTAGCCTTGAATCAGCACATTGGCACCTTTG-CATCTTTAAGCCCAATATCG
1 CTAGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCG
*
4947574 CTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCG
1 CTAGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCG
* * *
4947626 CTAGCCTTGAATCAGCATATTGGCATCTTTATCAT
1 CTAGCCTTGAATCAGCACATTGGCACCTTTGTCAT
4947661 TCCTTTCATC
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
51 30 0.37
52 51 0.63
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (52 bp):
CTAGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCG
Found at i:4947718 original size:61 final size:61
Alignment explanation
Indices: 4947605--4947723 Score: 159
Period size: 61 Copynumber: 2.0 Consensus size: 61
4947595 GGCACCTTTG
* * **
4947605 TCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTTATCATTCCTT
1 TCATCTTCAAGCCCAATATCGCTAGCCGTGAATCAGCATATTAACATCTTTATCATTCCTT
* * *
4947666 TCATCTTCAAGCCCGATGTCGCTGGCCGTGAATCAGCATATTAACA-CTTTTATCATTC
1 TCATCTTCAAGCCCAATATCGCTAGCCGTGAATCAGCATATTAACATC-TTTATCATTC
4947724 TACGCATCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 1 0.02
61 49 0.98
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.35
Consensus pattern (61 bp):
TCATCTTCAAGCCCAATATCGCTAGCCGTGAATCAGCATATTAACATCTTTATCATTCCTT
Found at i:4948494 original size:20 final size:20
Alignment explanation
Indices: 4948469--4948524 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
4948459 ACAATTAGTA
4948469 AATGTATCGATACATAAGTG
1 AATGTATCGATACATAAGTG
4948489 AATGTATCGATACATAAGTG
1 AATGTATCGATACATAAGTG
*
4948509 AATGTATCAATACATA
1 AATGTATCGATACATA
4948525 TCTCAAACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATAAGTG
Found at i:4953030 original size:17 final size:18
Alignment explanation
Indices: 4953008--4953041 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
4952998 AAATATTATC
4953008 TTAATTTT-TTAAAAATT
1 TTAATTTTATTAAAAATT
4953025 TTAATTTTATTAAAAAT
1 TTAATTTTATTAAAAAT
4953042 ATCAGTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTTTATTAAAAATT
Found at i:4955240 original size:18 final size:20
Alignment explanation
Indices: 4955192--4955230 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
4955182 TATACATGAC
4955192 AAAATCCAA-ATCATATCACA
1 AAAAT-CAACATCATATCACA
4955212 AAAATCAACATCATATCAC
1 AAAATCAACATCATATCAC
4955231 CAAACAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAATCAACATCATATCACA
Found at i:4957171 original size:189 final size:189
Alignment explanation
Indices: 4956668--4957422 Score: 1025
Period size: 189 Copynumber: 4.0 Consensus size: 189
4956658 TTTACTTCAA
* * * *** *
4956668 AATTCATCTTTTTTATCCAAGATTAGACTTCCAACGGTACTTTTTTGGTCATATATCAATACAAC
1 AATTCATCTTTTTTATTCAAGATTAGACTTCCAACGGTACTTTTTTTGTCACACGCCAATACGAC
* * * *
4956733 CCTTTATGCATGATAGAATAAGTTATAAAAATGTGTA-ACCTACCTAATAGAGGTCGACCTCTAT
66 CCTTTATGCATGACAAAATAAGTTACAAAAATGTGTAGA-CTACCCAATAGAGGTCGACCTCTAT
* * *
4956797 CAAGGCAACAAATATATTCTTGATCTTGGATAACTAGAACTATTGGAAAAAGA-ATCTAG
130 CAAGGCAACAAATATATTCCTGATCTTGGATAACTAAAACTATTGGAAAAAAAGATCTAG
* * * * * **
4956856 AATTCATCTTTTTTATTTGTTCAAGATCAAACTTCCAATGGTACTTGTTCTGTCACGTGCCAATA
1 AATTCATCTTTTTTA----TTCAAGATTAGACTTCCAACGGTACTTTTTTTGTCACACGCCAATA
* * * *
4956921 C-AGCCTTTTATGCATGACAAAATAAGTTACAAAAATGTGTAAACTACCCAACAGAGGTTGACCT
62 CGA-CCCTTTATGCATGACAAAATAAGTTACAAAAATGTGTAGACTACCCAATAGAGGTCGACCT
4956985 CTATCAAGGCAACAAATATATTCCTGATCTTGGATAACTAAAACTATTGGAAAAAAAGATCTAG
126 CTATCAAGGCAACAAATATATTCCTGATCTTGGATAACTAAAACTATTGGAAAAAAAGATCTAG
* * * *
4957049 AATTCATCTTTTTTATTCGAGATTATACTTTCGACGGTACTTTTTTTGTCACACGCCAATACGAC
1 AATTCATCTTTTTTATTCAAGATTAGACTTCCAACGGTACTTTTTTTGTCACACGCCAATACGAC
** * *
4957114 CCTTTATGTGTGACAAAATAAGTTACAAAAATGTGTAGACTACCCAATAGCGGTTGACCTCTATC
66 CCTTTATGCATGACAAAATAAGTTACAAAAATGTGTAGACTACCCAATAGAGGTCGACCTCTATC
4957179 AAGGCAACAAATATATTCCTGATCTTGGATAACTAAAACTATTGGAAAAAAAGATCTAG
131 AAGGCAACAAATATATTCCTGATCTTGGATAACTAAAACTATTGGAAAAAAAGATCTAG
* * *
4957238 AATTCATCTTTTTTATTCGAGATTAGACTTTCGACGGTACTTTTTTTGTCACACGCCAATACGAC
1 AATTCATCTTTTTTATTCAAGATTAGACTTCCAACGGTACTTTTTTTGTCACACGCCAATACGAC
** *
4957303 CCTTTATGTGTGACAAAATAAGTTACAAAAATGTGTAGACTACCTAATAGAGGTCGACCTCTATC
66 CCTTTATGCATGACAAAATAAGTTACAAAAATGTGTAGACTACCCAATAGAGGTCGACCTCTATC
* * * *
4957368 GAGGCAACAAATATATACCT-AGTCTCGGATAACTAGAACTATTGG-AAAAAAGATC
131 AAGGCAACAAATATATTCCTGA-TCTTGGATAACTAAAACTATTGGAAAAAAAGATC
4957423 CAGACGAAAT
Statistics
Matches: 513, Mismatches: 45, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
188 26 0.05
189 321 0.63
190 1 0.00
191 1 0.00
192 142 0.28
193 22 0.04
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (189 bp):
AATTCATCTTTTTTATTCAAGATTAGACTTCCAACGGTACTTTTTTTGTCACACGCCAATACGAC
CCTTTATGCATGACAAAATAAGTTACAAAAATGTGTAGACTACCCAATAGAGGTCGACCTCTATC
AAGGCAACAAATATATTCCTGATCTTGGATAACTAAAACTATTGGAAAAAAAGATCTAG
Found at i:4958293 original size:49 final size:52
Alignment explanation
Indices: 4958223--4958329 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 52
4958213 CTGGAAAAAG
*
4958223 AATGTATCAATATATTTTTCATTGTATCAATACATTCT-GG-TTTTAACCCA
1 AATGTATCAATACATTTTTCATTGTATCAATACATTCTAGGTTTTTAACCCA
** *
4958273 AATGTATC-ATACATTTTTCATTGTATTGATACATTCTAGGTTTTTGACCCA
1 AATGTATCAATACATTTTTCATTGTATCAATACATTCTAGGTTTTTAACCCA
4958324 AATGTA
1 AATGTA
4958330 GCGAATGTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 26 0.51
50 10 0.20
51 15 0.29
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (52 bp):
AATGTATCAATACATTTTTCATTGTATCAATACATTCTAGGTTTTTAACCCA
Found at i:4961028 original size:160 final size:158
Alignment explanation
Indices: 4960734--4961098 Score: 434
Period size: 160 Copynumber: 2.3 Consensus size: 158
4960724 TTTCGAAAGG
* * * * * *
4960734 ATACTTCAAC-CCATTTTTATTTCCAAAATATTAATTTTTCACCATCGGGGATCCTCCAGCCCTA
1 ATACTCCAACTCCATTTTTACTTCCAAAATATCAATTTTTCACCATCGAGGATACTCAAGCCCTA
4960798 TCATTTCTGAGAGGATACTCCAACCCCATTTTTACTTCCTAAATATCAAAATTTTCACCATCGAG
66 TCATTTCTGAGAGGATACTCCAACCCCATTTTTACTTCCTAAATATCAAAATTTTCACCATCGAG
* *
4960863 GATACTCCAACCCCATTATTTTTG-TGAA
131 GATACTCCAA-CCCATTATTTCTGAGGAA
* *
4960891 ATACTCCAACTCCATTTTTACTTCCTAAATATCAATTTTTTCACCATCGAGGATACTCAAATCCC
1 ATACTCCAACTCCATTTTTACTTCCAAAATATCAA-TTTTTCACCATCGAGGATACTC-AAGCCC
* * ** *
4960956 -ATCATTT-TCGAGGGGATACTCCAACGTCGTTTTTTACTTCCTAAATATTAAAATTTTCACCAT
64 TATCATTTCT-GAGAGGATACTCCAAC-CCCATTTTTACTTCCTAAATATCAAAATTTTCACCAT
* * **
4961019 CGGGGATACTCCAATCCATTATTTCTGAGGTG
127 CGAGGATACTCCAACCCATTATTTCTGAGGAA
* *
4961051 ATACTCTAACAT-CATTTTTACTTCCAAAAATATCAAAATTTTCACCAT
1 ATACTCCAAC-TCCATTTTTACTTCC-AAAATATC-AATTTTTCACCAT
4961099 TAGAGATACT
Statistics
Matches: 177, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
157 9 0.05
158 22 0.12
159 53 0.30
160 73 0.41
161 18 0.10
162 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (158 bp):
ATACTCCAACTCCATTTTTACTTCCAAAATATCAATTTTTCACCATCGAGGATACTCAAGCCCTA
TCATTTCTGAGAGGATACTCCAACCCCATTTTTACTTCCTAAATATCAAAATTTTCACCATCGAG
GATACTCCAACCCATTATTTCTGAGGAA
Found at i:4961091 original size:80 final size:77
Alignment explanation
Indices: 4960702--4961115 Score: 393
Period size: 79 Copynumber: 5.2 Consensus size: 77
4960692 ATTTATCGTT
* * * * * *
4960702 GGGGATACTCCAATCTCATCATTT-TCGAAAGGATACTTCAACCCATTTTTATTTCCAAAATAT-
1 GGGGATACTCCAA-CCCATCATTTCT-G-AGGGATACTCCAACTCATTTTTACTTCCTAAATATC
* *
4960765 TAATTTTTCACCATC
63 AAAATTTTCACCATC
* * *
4960780 GGGGATCCTCCAGCCCTATCATTTCTGAGAGGATACTCCAACCCCATTTTTACTTCCTAAATATC
1 GGGGATACTCCAACCC-ATCATTTCTGAG-GGATACTCCAA-CTCATTTTTACTTCCTAAATATC
4960845 AAAATTTTCACCATC
63 AAAATTTTCACCATC
* * * * **
4960860 GAGGATACTCCAACCCCATTATTTTTGTGAAATACTCCAACTCCATTTTTACTTCCTAAATATCA
1 GGGGATACTCCAA-CCCATCATTTCTGAGGGATACTCCAACT-CATTTTTACTTCCTAAATATCA
**
4960925 ATTTTTTCACCATC
64 AAATTTTCACCATC
* * *
4960939 GAGGATACTCAAATCCCATCATTT-TCGAGGGGATACTCCAACGTCGTTTTTTACTTCCTAAATA
1 GGGGATACTCCAA-CCCATCATTTCT-GA-GGGATACTCCAAC-TC-ATTTTTACTTCCTAAATA
*
4961003 TTAAAATTTTCACCATC
61 TCAAAATTTTCACCATC
* * * *
4961020 GGGGATACTCCAATCCATTATTTCTGAGGTGATACTCTAACATCATTTTTACTTCCAAAAATATC
1 GGGGATACTCCAACCCATCATTTCTGAGG-GATACTCCAAC-TCATTTTTACTTCC-TAAATATC
*
4961085 AAAATTTTCACCATT
63 AAAATTTTCACCATC
* *
4961100 AGAGATACTCCAACCC
1 GGGGATACTCCAACCC
4961116 CATTTTTACT
Statistics
Matches: 279, Mismatches: 43, Indels: 26
0.80 0.12 0.07
Matches are distributed among these distances:
77 3 0.01
78 31 0.11
79 99 0.35
80 99 0.35
81 47 0.17
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (77 bp):
GGGGATACTCCAACCCATCATTTCTGAGGGATACTCCAACTCATTTTTACTTCCTAAATATCAAA
ATTTTCACCATC
Found at i:4971351 original size:40 final size:40
Alignment explanation
Indices: 4971291--4971379 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
4971281 ACTTGAATGT
*
4971291 ATCGATACACACCCAGATGTATCGATACATTATGCTTTGC
1 ATCGATACACACCCAAATGTATCGATACATTATGCTTTGC
* *
4971331 ATTGATACACACCCAAATGTATCGATACATTATGCTTTGT
1 ATCGATACACACCCAAATGTATCGATACATTATGCTTTGC
4971371 ATCGATACA
1 ATCGATACA
4971380 TTGTATCGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (40 bp):
ATCGATACACACCCAAATGTATCGATACATTATGCTTTGC
Found at i:4971371 original size:20 final size:20
Alignment explanation
Indices: 4971308--4971381 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
4971298 CACACCCAGA
4971308 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
* * * ** **
4971328 TGCATTGATACA-CACCCAAA
1 TGTATCGATACATTATGC-TT
4971348 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
4971368 TGTATCGATACATT
1 TGTATCGATACATT
4971382 GTATCGATAC
Statistics
Matches: 38, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
19 2 0.05
20 34 0.89
21 2 0.05
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:4971385 original size:13 final size:13
Alignment explanation
Indices: 4971367--4971393 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4971357 ACATTATGCT
4971367 TTGTATCGATACA
1 TTGTATCGATACA
4971380 TTGTATCGATACA
1 TTGTATCGATACA
4971393 T
1 T
4971394 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4971423 original size:20 final size:19
Alignment explanation
Indices: 4971377--4971433 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
4971367 TTGTATCGAT
*
4971377 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
4971396 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
4971415 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
4971434 AAACTAGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:4975121 original size:50 final size:50
Alignment explanation
Indices: 4975063--4975166 Score: 181
Period size: 50 Copynumber: 2.1 Consensus size: 50
4975053 TTTTTTTCTA
* *
4975063 GAAATTTTCCAGAATATATCGATACATTGAAGAATGTATCGATACATCTG
1 GAAATTTTCCAAAATATATCGATACATTGAAGAATATATCGATACATCTG
*
4975113 GAAATTTTCCAAAATATATCGATACATTGAAGACTATATCGATACATCTG
1 GAAATTTTCCAAAATATATCGATACATTGAAGAATATATCGATACATCTG
4975163 GAAA
1 GAAA
4975167 ACCCAGATGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (50 bp):
GAAATTTTCCAAAATATATCGATACATTGAAGAATATATCGATACATCTG
Found at i:4975338 original size:21 final size:22
Alignment explanation
Indices: 4975314--4975363 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
4975304 ATCAAATCTT
* *
4975314 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
4975335 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
4975357 --TCAAAAT
1 CTTCAAAAT
4975364 CATCAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:4977116 original size:20 final size:22
Alignment explanation
Indices: 4977076--4977123 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 22
4977066 TGAAGATAAA
*
4977076 TTTTTATCAAGGGGGAGAAATT
1 TTTTTATCAAGAGGGAGAAATT
4977098 TTTTTATCAA-AGGGA-AAATT
1 TTTTTATCAAGAGGGAGAAATT
4977118 TTTTTA
1 TTTTTA
4977124 ACGAAAGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.44
21 4 0.16
22 10 0.40
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (22 bp):
TTTTTATCAAGAGGGAGAAATT
Found at i:4977130 original size:21 final size:21
Alignment explanation
Indices: 4977088--4977130 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
4977078 TTTATCAAGG
*
4977088 GGGAGAAATTTTTTTATCAAA
1 GGGAGAAATTTTTTTAACAAA
4977109 GGGA-AAATTTTTTTAACGAAA
1 GGGAGAAATTTTTTTAAC-AAA
4977130 G
1 G
4977131 CCTTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.35
Consensus pattern (21 bp):
GGGAGAAATTTTTTTAACAAA
Found at i:4980304 original size:140 final size:140
Alignment explanation
Indices: 4980145--4980437 Score: 374
Period size: 140 Copynumber: 2.1 Consensus size: 140
4980135 TTATTCTGAG
* * ** * * * *
4980145 CCTTAATGGAGGATCGAAAAGACA-TGAAAAGCTTGAAAATTTTCCATTCCCTTATAGATGCCCA
1 CCTTAATGGAGAATAGAAAAGACACCAAAAAGCTTGAAAATTTT-CATACCC-CACAGATACCCA
* * * * *
4980209 TGAGAATATTAGAAATTCCAAAAAATTGGGATAATAATTTTTATTTGACT-TTTAATTTTTGAAA
64 TGAGAATATTAGAAATTCAAAAAAATTGGGATAATAATTTTTAATTAAATCTTAAATTTTTGAAA
*
4980273 ATTCATTTCGTA
129 ATTCATTTCATA
* * **
4980285 TCTTAATGGAGAATAGAAAAGATACCAAAAATTTTGAAAATTTTCATACCCCACAGATACCCATG
1 CCTTAATGGAGAATAGAAAAGACACCAAAAAGCTTGAAAATTTTCATACCCCACAGATACCCATG
* *
4980350 GGAATATTAGAAATTCAAAAAAATTGTGATAATAATTTTTAATTAAATCTTAAATTTTTGAAAAT
66 AGAATATTAGAAATTCAAAAAAATTGGGATAATAATTTTTAATTAAATCTTAAATTTTTGAAAAT
4980415 TCATTTCATA
131 TCATTTCATA
4980425 CCTTAATGGAGAA
1 CCTTAATGGAGAA
4980438 CCAAAAAAAT
Statistics
Matches: 130, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
139 53 0.41
140 62 0.48
141 15 0.12
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (140 bp):
CCTTAATGGAGAATAGAAAAGACACCAAAAAGCTTGAAAATTTTCATACCCCACAGATACCCATG
AGAATATTAGAAATTCAAAAAAATTGGGATAATAATTTTTAATTAAATCTTAAATTTTTGAAAAT
TCATTTCATA
Found at i:4980365 original size:139 final size:141
Alignment explanation
Indices: 4980177--4980502 Score: 401
Period size: 140 Copynumber: 2.3 Consensus size: 141
4980167 CATGAAAAGC
* * * * *
4980177 TTGAAAATTTTCCATTCCCTTATAGATGCCCATGAGAATATTAGAAATTCCAAAAAATTGGGATA
1 TTGAAAATTTT-CATACCCTCACAGATACCCATGAGAATATTAGAAATTCAAAAAAATTGGGATA
* * * * * * *
4980242 ATAATTTTTATTTGACT-TTTAATTTTTGAAAATTCATTTCGTATCTTAATGGAGAA-TAGAAAA
65 ATAATTTTTAATTAAATCTTAAATTTTTGAAAATTCATTTCATACCTTAATGGAGAACCA-AAAA
*
4980305 GATACCAAAAATT
129 AATACCAAAAATT
* *
4980318 TTGAAAATTTTCATACCC-CACAGATACCCATGGGAATATTAGAAATTCAAAAAAATTGTGATAA
1 TTGAAAATTTTCATACCCTCACAGATACCCATGAGAATATTAGAAATTCAAAAAAATTGGGATAA
4980382 TAATTTTTAATTAAATCTTAAATTTTTGAAAATTCATTTCATACCTTAATGGAGAACCAAAAAAA
66 TAATTTTTAATTAAATCTTAAATTTTTGAAAATTCATTTCATACCTTAATGGAGAACCAAAAAAA
* *
4980447 TACTAAAAGTT
131 TACCAAAAATT
* * *
4980458 TTAAAAATTTTCATA-CCTCTA-GGTATACCCATGAAAATATTAGAA
1 TTGAAAATTTTCATACCCTC-ACAG-ATACCCATGAGAATATTAGAA
4980503 TTACGAAAAT
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
139 55 0.35
140 72 0.45
141 32 0.20
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (141 bp):
TTGAAAATTTTCATACCCTCACAGATACCCATGAGAATATTAGAAATTCAAAAAAATTGGGATAA
TAATTTTTAATTAAATCTTAAATTTTTGAAAATTCATTTCATACCTTAATGGAGAACCAAAAAAA
TACCAAAAATT
Found at i:4980567 original size:9 final size:9
Alignment explanation
Indices: 4980553--4980587 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
4980543 AATTTATTTC
4980553 TTATTTTTT
1 TTATTTTTT
4980562 TTATTTTTT
1 TTATTTTTT
*
4980571 TACATTTTTT
1 T-TATTTTTT
4980581 TTATTTT
1 TTATTTT
4980588 CAAAATTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (9 bp):
TTATTTTTT
Found at i:4982123 original size:166 final size:165
Alignment explanation
Indices: 4981911--4982313 Score: 490
Period size: 166 Copynumber: 2.4 Consensus size: 165
4981901 TTTAAAACTC
* * * * * *
4981911 ATGAAAATAAATTAATTTTTGAAAATTTATTTAATATGAGTTAAATAATAATATTTAATGAATTT
1 ATGAAAATGAATGAATTTTTGAAAAATAATTTAATATAAATTAAATAATAATATTTAATGAATTT
* * * *
4981976 TAAAAATTAAAAACCTAGAAAAAGCCCT-CCAAAAATATTTACGGAGTA-AAAAACTCTTTATTT
66 TAAAAATAAAAAACCAAGAAAAA-CCCTCCCAAAAATATTTACAGAGTACAAAAA-TCTATATTT
4982039 CAAAAACAAAGA-AATTTCAAGAGAAAAATGAAA-ATTTT
129 CAAAAA-AAAGAGAATTTCAAGA-AAAAATGAAATA-TTT
* *
4982077 ATGATAATGAATGAATTTTTGAAAAATAATTTAATATAAATTAAATAATACTATTTAATGAATTT
1 ATGAAAATGAATGAATTTTTGAAAAATAATTTAATATAAATTAAATAATAATATTTAATGAATTT
** *
4982142 TAAAAATAAAAAACCAAGAAAAATTCTCCCGAAAATATTTACAGAGTACAAAAATCTATATTTCA
66 TAAAAATAAAAAACCAAGAAAAACCCTCCCAAAAATATTTACAGAGTACAAAAATCTATATTTCA
* * *
4982207 AAAATAAGAGAATTTTAGGAAAAAATGAAATATTT
131 AAAAAAAGAGAATTTCAAGAAAAAATGAAATATTT
* * * * * ** *
4982242 ATGAAAATTAGTTAATTTTTGCAAAATAATTTAATGTTGATTAAATAATAATATTTTATGAATTT
1 ATGAAAATGAATGAATTTTTGAAAAATAATTTAATATAAATTAAATAATAATATTTAATGAATTT
*
4982307 TCAAAAT
66 TAAAAAT
4982314 GTTAAACCCA
Statistics
Matches: 204, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
165 80 0.39
166 119 0.58
167 5 0.02
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.34
Consensus pattern (165 bp):
ATGAAAATGAATGAATTTTTGAAAAATAATTTAATATAAATTAAATAATAATATTTAATGAATTT
TAAAAATAAAAAACCAAGAAAAACCCTCCCAAAAATATTTACAGAGTACAAAAATCTATATTTCA
AAAAAAAGAGAATTTCAAGAAAAAATGAAATATTT
Found at i:4988074 original size:162 final size:162
Alignment explanation
Indices: 4987664--4988099 Score: 411
Period size: 162 Copynumber: 2.7 Consensus size: 162
4987654 TATAAAAATT
* * * * * *
4987664 CATTTCATACCTTAATG-GAATTCCAAAAAGATACGAAAAGTTTTTGAAATCTTTTATACCCCTA
1 CATTTCATACCTTAATGAAAACT-CAAAAAGATAAGAAAAG-TTTTAAAATCTCTTATACACCTA
** * * **
4987728 CGGA-CCCCATAGGAATATAAAAGATTAGAAAAGAAAGATTTAA-ATTGATCTTGGTTATGAAAA
64 CAAATTCCCATAGGAATATAAAAGA-T--AAAA-AAAGA-TTAATATTTATCTTAATTATGAAAA
* * *
4987791 TGTTGATTCAATTTAATTTTATTTGTTTTCAAAAAATAT
124 TGTTAATTCAATTTAATTTTATTTATTTTCAAAAAATAC
* * * *
4987830 CGTTTCATACCTTAATGAAAACTCAAAAAGATACGAAAGGTTTTCAAATCTCTTATACACCTACA
1 CATTTCATACCTTAATGAAAACTCAAAAAGATAAGAAAAGTTTTAAAATCTCTTATACACCTACA
* * *
4987895 GATTCCCATATGAATATAAAAGATAAAAAAATGATTAATATTTA-CTTTAATTATGAAAGTGTTA
66 AATTCCCATAGGAATATAAAAGATAAAAAAA-GATTAATATTTATC-TTAATTATGAAAATGTTA
*
4987959 ATTTC-ATTTAA-TTTATTTATTTTTAAAAAATAC
129 A-TTCAATTTAATTTTATTTATTTTCAAAAAATAC
* * * * * *
4987992 CATTTCGTACCTTAATGGAAACTTGAAAAA-ATAAGAAAAGTTTTAAAATCT-TTCATGCCCCTG
1 CATTTCATACCTTAATGAAAAC-TCAAAAAGATAAGAAAAGTTTTAAAATCTCTT-ATACACCTA
* * **
4988055 CAAATTTCCATAGGAATATAAAATATTGAAAAAGATTAATATTTA
64 CAAATTCCCATAGGAATATAAAAGATAAAAAAAGATTAATATTTA
4988100 AATATCTTTA
Statistics
Matches: 228, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
161 14 0.06
162 97 0.43
163 37 0.16
164 3 0.01
165 24 0.11
166 50 0.22
167 3 0.01
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (162 bp):
CATTTCATACCTTAATGAAAACTCAAAAAGATAAGAAAAGTTTTAAAATCTCTTATACACCTACA
AATTCCCATAGGAATATAAAAGATAAAAAAAGATTAATATTTATCTTAATTATGAAAATGTTAAT
TCAATTTAATTTTATTTATTTTCAAAAAATAC
Found at i:4989944 original size:168 final size:167
Alignment explanation
Indices: 4989372--4990004 Score: 868
Period size: 167 Copynumber: 3.8 Consensus size: 167
4989362 AAAACAACAA
* * **
4989372 ATTTCAAAGGAAAAAAATCCAAAACTCATGAAAATGAATTAAATTTTAAAAACAGATTTAATATG
1 ATTTCAAA-GAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAACAGATTTAATATG
* * **
4989437 AGTTAAATGATGATATTTTATGAATTTTAAAAAATGAAAAACCAAG-AAACTCCGCCTGAAAAAA
65 AGTTAAATGATGATATTTTATGAATTTT-AAAAATAAAAAACCAAGAAAAATCC-CCCCAAAAAA
* * ** *
4989501 TTTATGAAACAAAAAAC-TCGATTTTTTAGAAAAAT-GGGC
128 TTTATGAAATAAAAAACTTAG-TTTTTCGGGAAAATGGGGC
* * *
4989540 ATTTCAAAGAAAAAAATCCAAAACCTATGAAAATGAATTAA-ATTTTCAAA-ATGATTTAATATG
1 ATTTCAAAGAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAACA-GATTTAATATG
4989603 AGTTAAATGATGATATTTTATGAATTTTAAAAATAAAAAACCAAGAAAAATCCCCCCCAAAAAAT
65 AGTTAAATGATGATATTTTATGAATTTTAAAAATAAAAAACCAAGAAAAAT-CCCCCCAAAAAAT
* * *
4989668 TTATGAAATAAAAAACTCAGCTTTTCGAGAAAA-GGGGC
129 TTATGAAATAAAAAACTTAGTTTTTCGGGAAAATGGGGC
* *
4989706 ACTTCAAAGAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAATTA-ATTTAATATG
1 ATTTCAAAGAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAA-CAGATTTAATATG
* **
4989770 AGTTAAATAATGATATTTTATGAATTTTAAAAATAAAAAACCAAGAAAAATCTTCCCAGAAAAAT
65 AGTTAAATGATGATATTTTATGAATTTTAAAAATAAAAAACCAAGAAAAATCCCCCCA-AAAAAT
4989835 TTATGAAATAAAAAACTTAGTTTTTCGGGAAAATGGGGC
129 TTATGAAATAAAAAACTTAGTTTTTCGGGAAAATGGGGC
*
4989874 ATTTCAAAGAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAACACATTTAATATGA
1 ATTTCAAAGAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAACAGATTTAATATGA
* * * * *
4989939 GTTAAATGATGATATTTGATTAATTTAAAAAAT-AAAAACCAATAAAAATCCTCCCAAAAAATTT
66 GTTAAATGATGATATTTTATGAATTTTAAAAATAAAAAACCAAGAAAAATCCCCCCAAAAAATTT
4990003 AT
131 AT
4990005 AGAGTAGAAA
Statistics
Matches: 419, Mismatches: 35, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
165 17 0.04
166 139 0.33
167 159 0.38
168 103 0.25
169 1 0.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (167 bp):
ATTTCAAAGAAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTTGAAACAGATTTAATATGA
GTTAAATGATGATATTTTATGAATTTTAAAAATAAAAAACCAAGAAAAATCCCCCCAAAAAATTT
ATGAAATAAAAAACTTAGTTTTTCGGGAAAATGGGGC
Found at i:4991072 original size:13 final size:13
Alignment explanation
Indices: 4991054--4991078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4991044 ATTACTCAAA
4991054 TGTATCGATACAT
1 TGTATCGATACAT
4991067 TGTATCGATACA
1 TGTATCGATACA
4991079 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4991130 original size:52 final size:52
Alignment explanation
Indices: 4991087--4991215 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
4991077 CACTGATCTT
*
4991087 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
4991139 TGTATTGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
4991191 TGTATCGATATATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
4991216 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:4992632 original size:34 final size:35
Alignment explanation
Indices: 4992594--4992660 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
4992584 CCTTACAACA
4992594 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
4992628 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
4992661 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:4993242 original size:23 final size:23
Alignment explanation
Indices: 4993211--4993256 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4993201 TGATTTTACA
*
4993211 TGAATAGTGATAC-ATGAACAGTG
1 TGAACAGTGA-ACTATGAACAGTG
*
4993234 TGAACAGTGACCTATGAACAGTG
1 TGAACAGTGAACTATGAACAGTG
4993257 ATGTATCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (23 bp):
TGAACAGTGAACTATGAACAGTG
Found at i:4993302 original size:22 final size:22
Alignment explanation
Indices: 4993247--4993302 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
4993237 ACAGTGACCT
4993247 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
4993269 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
4993290 ATGAACAGTGATG
1 ATGAACAGTGATG
4993303 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:4993309 original size:10 final size:10
Alignment explanation
Indices: 4993290--4993320 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4993280 GTATCGATAC
4993290 ATGAACAGTG
1 ATGAACAGTG
*
4993300 ATGAATAGTG
1 ATGAACAGTG
4993310 ATGAACAGTG
1 ATGAACAGTG
4993320 A
1 A
4993321 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:4993460 original size:20 final size:20
Alignment explanation
Indices: 4993397--4993467 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
4993387 GCCAATGACC
**
4993397 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
4993417 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
4993437 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
4993457 TGTATCGATAC
1 TGTATCGATAC
4993468 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:4993533 original size:21 final size:21
Alignment explanation
Indices: 4993507--4993547 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4993497 GTCAACCTTG
4993507 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
4993528 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
4993548 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:4994985 original size:13 final size:13
Alignment explanation
Indices: 4994967--4994991 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4994957 ACTGAAGCAA
4994967 TGTATCGATACAT
1 TGTATCGATACAT
4994980 TGTATCGATACA
1 TGTATCGATACA
4994992 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4995915 original size:22 final size:22
Alignment explanation
Indices: 4995860--4995915 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
4995850 ACAGTGACCT
4995860 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
4995882 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
4995903 ATGAACAGTGATG
1 ATGAACAGTGATG
4995916 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:4995922 original size:10 final size:10
Alignment explanation
Indices: 4995903--4995933 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4995893 GTATCGATAC
4995903 ATGAACAGTG
1 ATGAACAGTG
*
4995913 ATGAATAGTG
1 ATGAACAGTG
4995923 ATGAACAGTG
1 ATGAACAGTG
4995933 A
1 A
4995934 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:4996073 original size:20 final size:20
Alignment explanation
Indices: 4996010--4996080 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
4996000 GCCAATGACC
**
4996010 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
4996030 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
4996050 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
4996070 TGTATCGATAC
1 TGTATCGATAC
4996081 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:4996146 original size:21 final size:21
Alignment explanation
Indices: 4996120--4996160 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4996110 GTCAACCTTG
4996120 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
4996141 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
4996161 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:4997779 original size:13 final size:13
Alignment explanation
Indices: 4997761--4997785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4997751 ACTGAAGCAA
4997761 TGTATCGATACAT
1 TGTATCGATACAT
4997774 TGTATCGATACA
1 TGTATCGATACA
4997786 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4998709 original size:22 final size:22
Alignment explanation
Indices: 4998654--4998709 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
4998644 ACAGTGACCT
4998654 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
4998676 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
4998697 ATGAACAGTGATG
1 ATGAACAGTGATG
4998710 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:4998716 original size:10 final size:10
Alignment explanation
Indices: 4998697--4998727 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4998687 GTATCGATAC
4998697 ATGAACAGTG
1 ATGAACAGTG
*
4998707 ATGAATAGTG
1 ATGAACAGTG
4998717 ATGAACAGTG
1 ATGAACAGTG
4998727 A
1 A
4998728 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:4998867 original size:20 final size:20
Alignment explanation
Indices: 4998804--4998874 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
4998794 GCCAATGACC
**
4998804 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
4998824 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
4998844 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
4998864 TGTATCGATAC
1 TGTATCGATAC
4998875 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:4998940 original size:21 final size:21
Alignment explanation
Indices: 4998914--4998954 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4998904 GTCAACCTTG
4998914 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
4998935 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
4998955 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:5000569 original size:13 final size:13
Alignment explanation
Indices: 5000551--5000575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5000541 ACTGAAGCAA
5000551 TGTATCGATACAT
1 TGTATCGATACAT
5000564 TGTATCGATACA
1 TGTATCGATACA
5000576 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5001499 original size:22 final size:22
Alignment explanation
Indices: 5001444--5001499 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
5001434 ACAGTGACCT
5001444 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
5001466 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
5001487 ATGAACAGTGATG
1 ATGAACAGTGATG
5001500 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:5001506 original size:10 final size:10
Alignment explanation
Indices: 5001487--5001517 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
5001477 GTATCGATAC
5001487 ATGAACAGTG
1 ATGAACAGTG
*
5001497 ATGAATAGTG
1 ATGAACAGTG
5001507 ATGAACAGTG
1 ATGAACAGTG
5001517 A
1 A
5001518 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:5001657 original size:20 final size:20
Alignment explanation
Indices: 5001594--5001664 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
5001584 GCCAATGACC
**
5001594 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
5001614 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
5001634 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
5001654 TGTATCGATAC
1 TGTATCGATAC
5001665 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:5001730 original size:21 final size:21
Alignment explanation
Indices: 5001704--5001744 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5001694 GTCAACCTTG
5001704 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
5001725 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
5001745 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:5003363 original size:13 final size:13
Alignment explanation
Indices: 5003345--5003369 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5003335 ACTGAAGCAA
5003345 TGTATCGATACAT
1 TGTATCGATACAT
5003358 TGTATCGATACA
1 TGTATCGATACA
5003370 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5004293 original size:22 final size:22
Alignment explanation
Indices: 5004238--5004293 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
5004228 ACAGTGACCT
5004238 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
5004260 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
5004281 ATGAACAGTGATG
1 ATGAACAGTGATG
5004294 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:5004300 original size:10 final size:10
Alignment explanation
Indices: 5004281--5004311 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
5004271 GTATCGATAC
5004281 ATGAACAGTG
1 ATGAACAGTG
*
5004291 ATGAATAGTG
1 ATGAACAGTG
5004301 ATGAACAGTG
1 ATGAACAGTG
5004311 A
1 A
5004312 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:5004451 original size:20 final size:20
Alignment explanation
Indices: 5004388--5004458 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
5004378 GCCAATGACC
**
5004388 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
5004408 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
5004428 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
5004448 TGTATCGATAC
1 TGTATCGATAC
5004459 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:5004524 original size:21 final size:21
Alignment explanation
Indices: 5004498--5004538 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5004488 GTCAACCTTG
5004498 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
5004519 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
5004539 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:5006157 original size:13 final size:13
Alignment explanation
Indices: 5006139--5006163 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5006129 ACTGAAGCAA
5006139 TGTATCGATACAT
1 TGTATCGATACAT
5006152 TGTATCGATACA
1 TGTATCGATACA
5006164 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5007087 original size:22 final size:22
Alignment explanation
Indices: 5007032--5007087 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
5007022 ACAGTGACCT
5007032 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
5007054 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
5007075 ATGAACAGTGATG
1 ATGAACAGTGATG
5007088 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:5007094 original size:10 final size:10
Alignment explanation
Indices: 5007075--5007105 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
5007065 GTATCGATAC
5007075 ATGAACAGTG
1 ATGAACAGTG
*
5007085 ATGAATAGTG
1 ATGAACAGTG
5007095 ATGAACAGTG
1 ATGAACAGTG
5007105 A
1 A
5007106 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:5007245 original size:20 final size:20
Alignment explanation
Indices: 5007182--5007252 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
5007172 GCCAATGACC
**
5007182 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
5007202 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
5007222 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
5007242 TGTATCGATAC
1 TGTATCGATAC
5007253 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:5007318 original size:21 final size:21
Alignment explanation
Indices: 5007292--5007332 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5007282 GTCAACCTTG
5007292 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
5007313 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
5007333 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:5018507 original size:20 final size:18
Alignment explanation
Indices: 5018484--5018577 Score: 102
Period size: 20 Copynumber: 5.1 Consensus size: 18
5018474 GGTGTCCTCC
5018484 ACAAAAAAAAAACCAAATAA
1 ACAAAAAAAAAA-CAAA-AA
*
5018504 ACAAAAAAAAGAAGAAAAAA
1 ACAAAAAAAA-AA-CAAAAA
5018524 ACAAAAAAAAAACAAAAA
1 ACAAAAAAAAAACAAAAA
*
5018542 AC-AAAAAAACA-AAAAA
1 ACAAAAAAAAAACAAAAA
*
5018558 ACAAAAACAAAACAACAAA
1 ACAAAAAAAAAACAA-AAA
5018577 A
1 A
5018578 ACAACAACAA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
16 7 0.11
17 15 0.23
18 9 0.14
19 6 0.09
20 22 0.34
21 5 0.08
ACGTcount: A:0.84, C:0.13, G:0.02, T:0.01
Consensus pattern (18 bp):
ACAAAAAAAAAACAAAAA
Found at i:5018523 original size:11 final size:11
Alignment explanation
Indices: 5018506--5018584 Score: 88
Period size: 11 Copynumber: 7.0 Consensus size: 11
5018496 CCAAATAAAC
*
5018506 AAAAAAAAGAA
1 AAAAAAAACAA
*
5018517 GAAAAAAACAA
1 AAAAAAAACAA
5018528 AAAAAAAACAA
1 AAAAAAAACAA
5018539 AAAACAAAA-AA
1 AAAA-AAAACAA
5018550 ACAAAAAAACAA
1 A-AAAAAAACAA
*
5018562 AAACAAAACAA
1 AAAAAAAACAA
*
5018573 CAAAAACAACAA
1 -AAAAAAAACAA
5018585 CAACAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
11 39 0.67
12 19 0.33
ACGTcount: A:0.85, C:0.13, G:0.03, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:5018528 original size:40 final size:40
Alignment explanation
Indices: 5018484--5018593 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
5018474 GGTGTCCTCC
* *
5018484 ACAAAAAAAAAACCAAATAAACAAAAAAA-AGAAGAA-AAAA
1 ACAAAAAAAAAA-CAAA-AAACAAAAAAACAAAAAAACAAAA
5018524 ACAAAAAAAAAACAAAAAACAAAAAAACAAAAAAACAAAA
1 ACAAAAAAAAAACAAAAAACAAAAAAACAAAAAAACAAAA
5018564 ACAAAACAACAAAAACAACAACAACAAAAA
1 AC-AAA-AA-AAAAACAA-AA-AACAAAAA
5018594 GGGTCCGGAT
Statistics
Matches: 61, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
38 11 0.18
39 9 0.15
40 18 0.30
41 3 0.05
42 2 0.03
43 8 0.13
44 2 0.03
45 8 0.13
ACGTcount: A:0.83, C:0.15, G:0.02, T:0.01
Consensus pattern (40 bp):
ACAAAAAAAAAACAAAAAACAAAAAAACAAAAAAACAAAA
Found at i:5018529 original size:8 final size:8
Alignment explanation
Indices: 5018489--5018584 Score: 87
Period size: 8 Copynumber: 12.2 Consensus size: 8
5018479 CCTCCACAAA
5018489 AAAAAAACC
1 AAAAAAA-C
*
5018498 AAATAAAC
1 AAAAAAAC
5018506 AAAAAAA-
1 AAAAAAAC
5018513 AGAAGAAAA-
1 A-AA-AAAAC
*
5018522 AAACAAA-
1 AAAAAAAC
5018529 AAAAAAAC
1 AAAAAAAC
5018537 -AAAAAAC
1 AAAAAAAC
5018544 AAAAAAAC
1 AAAAAAAC
5018552 AAAAAAAC
1 AAAAAAAC
5018560 --AAAAAC
1 AAAAAAAC
*
5018566 AAAACAAC
1 AAAAAAAC
5018574 AAAAACAAC
1 AAAAA-AAC
5018583 AA
1 AA
5018585 CAACAAAAAG
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
6 6 0.08
7 17 0.23
8 35 0.47
9 16 0.22
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.01
Consensus pattern (8 bp):
AAAAAAAC
Found at i:5018556 original size:34 final size:34
Alignment explanation
Indices: 5018484--5018593 Score: 112
Period size: 34 Copynumber: 3.0 Consensus size: 34
5018474 GGTGTCCTCC
*
5018484 ACAAAAAAAAAACCAAATAAACAAAAAAAAGAAGAAAAAA
1 ACAAAAAAAAAA-CAAA-AAAC---AAAAA-AACAAAAAA
5018524 ACAAAAAAAAAACAAAAAACAAAAAAACAAAAAA
1 ACAAAAAAAAAACAAAAAACAAAAAAACAAAAAA
* *
5018558 ACAAAAACAAAACAACAAAAACAACAACAACAAAAA
1 ACAAAAAAAAAAC-A-AAAAACAA-AAAAACAAAAA
5018594 GGGTCCGGAT
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
34 20 0.31
35 6 0.09
36 8 0.12
37 10 0.16
38 4 0.06
39 4 0.06
40 12 0.19
ACGTcount: A:0.83, C:0.15, G:0.02, T:0.01
Consensus pattern (34 bp):
ACAAAAAAAAAACAAAAAACAAAAAAACAAAAAA
Found at i:5018565 original size:29 final size:29
Alignment explanation
Indices: 5018489--5018584 Score: 110
Period size: 26 Copynumber: 3.3 Consensus size: 29
5018479 CCTCCACAAA
* * *
5018489 AAAAAAACCAAATAAACAAAAA-AAAGAAG
1 AAAAAAA-CAAAAAAACAAAAACAAAAAAC
5018518 AAAAAAAC--AAAAA-AAAAACAAAAAAC
1 AAAAAAACAAAAAAACAAAAACAAAAAAC
5018544 AAAAAAACAAAAAAACAAAAACAAAACAAC
1 AAAAAAACAAAAAAACAAAAACAAAA-AAC
5018574 AAAAACAACAA
1 AAAAA-AACAA
5018585 CAACAAAAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.09
26 17 0.29
28 6 0.10
29 17 0.29
30 8 0.14
31 5 0.09
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.01
Consensus pattern (29 bp):
AAAAAAACAAAAAAACAAAAACAAAAAAC
Found at i:5018578 original size:1 final size:1
Alignment explanation
Indices: 5018486--5018569 Score: 60
Period size: 1 Copynumber: 84.0 Consensus size: 1
5018476 TGTCCTCCAC
** * * * * * * *
5018486 AAAAAAAAAACCAAATAAACAAAAAAAAGAAGAAAAAAACAAAAAAAAAACAAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
5018551 CAAAAAAACAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAA
5018570 CAACAAAAAC
Statistics
Matches: 61, Mismatches: 22, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.01
Consensus pattern (1 bp):
A
Found at i:5018583 original size:23 final size:23
Alignment explanation
Indices: 5018521--5018592 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
5018511 AAAGAAGAAA
5018521 AAAACAA-AAAAAAAACAAAAAAC
1 AAAACAACAAAAAAAAC-AAAAAC
*
5018544 AAAAAAAC-AAAAAAACAAAAAC
1 AAAACAACAAAAAAAACAAAAAC
* *
5018566 AAAACAACAAAAACAACAACAAC
1 AAAACAACAAAAAAAACAAAAAC
5018589 AAAA
1 AAAA
5018593 AGGGTCCGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.30
23 30 0.70
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (23 bp):
AAAACAACAAAAAAAACAAAAAC
Found at i:5020087 original size:27 final size:27
Alignment explanation
Indices: 5020015--5020145 Score: 127
Period size: 27 Copynumber: 4.6 Consensus size: 27
5020005 TATTCCTCAC
* *
5020015 CCTTCAAAAGCCCACAAGTTAGTGGCAT
1 CCTTC-AAAGCCCACAAGTCAGTGGCAA
* *
5020043 CTTTTTCAAAGCCTACAAGTCAGTGGCAA
1 C--CTTCAAAGCCCACAAGTCAGTGGCAA
* *
5020072 CCTTCAAAGCCCACAAATCAGTGGCAC
1 CCTTCAAAGCCCACAAGTCAGTGGCAA
*
5020099 CCTTTTCCCAAAGCCCACAAGTCAGTGGTAA
1 CC--TT--CAAAGCCCACAAGTCAGTGGCAA
5020130 CCTTCAAAAGCCCACA
1 CCTTC-AAAGCCCACA
5020146 CAAGTTGGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
27 25 0.29
28 11 0.13
29 24 0.28
30 3 0.04
31 22 0.26
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (27 bp):
CCTTCAAAGCCCACAAGTCAGTGGCAA
Found at i:5020132 original size:58 final size:57
Alignment explanation
Indices: 5020015--5020145 Score: 183
Period size: 58 Copynumber: 2.3 Consensus size: 57
5020005 TATTCCTCAC
* * * * *
5020015 CCTTCAAAAGCCCACAAGTTAGTGGCATCTTTTTCAAAGCCTACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAATCAGTGGCACCTTTTCCAAAGCCCACAAGTCAGTGGCAA
*
5020072 CCTTC-AAAGCCCACAAATCAGTGGCACCCTTTTCCCAAAGCCCACAAGTCAGTGGTAA
1 CCTTCAAAAGCCCACAAATCAGTGGCA-CCTTTT-CCAAAGCCCACAAGTCAGTGGCAA
5020130 CCTTCAAAAGCCCACA
1 CCTTCAAAAGCCCACA
5020146 CAAGTTGGTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
56 19 0.29
57 10 0.15
58 26 0.40
59 10 0.15
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (57 bp):
CCTTCAAAAGCCCACAAATCAGTGGCACCTTTTCCAAAGCCCACAAGTCAGTGGCAA
Found at i:5020231 original size:49 final size:49
Alignment explanation
Indices: 5020162--5020341 Score: 191
Period size: 49 Copynumber: 3.7 Consensus size: 49
5020152 GGTGTCATCT
* *
5020162 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATAGTGGCACTGTCA
1 TCTT-TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTGTCA
* * * *
5020212 TCTTTAAGACCAATGTCGCTAGCTTTGAATCAGCACATTGGCATCT-TCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTGTCA
* * * * * *
5020261 TCTTTAAGTCTAGTATCGCTGGCTTTGAATTAGCATATTGGCACCGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTGTCA
* ** *
5020310 TCTTTAAGATCAACGTCGCTGGCCATGAATCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCA
5020342 ACACATTGTC
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
48 1 0.01
49 98 0.93
50 6 0.06
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (49 bp):
TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTGTCA
Found at i:5020339 original size:98 final size:99
Alignment explanation
Indices: 5020162--5020349 Score: 261
Period size: 98 Copynumber: 1.9 Consensus size: 99
5020152 GGTGTCATCT
* *
5020162 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATAGTGGCACTGTCATCTTTAAGACCAATG
1 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATAGTGGCACCGTCATCTTTAAGACCAACG
** *
5020227 TCGCTAGCTTTGAATCAGCACATTGGCATCTTCA
66 TCGCTAGCCATGAATCAACACATTGGCATCTTCA
* * * * * *
5020261 TCTT-TAAGTCTAGTATCGCTGGCTTTGAATTAGCATATTGGCACCGTCATCTTTAAGATCAACG
1 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATAGTGGCACCGTCATCTTTAAGACCAACG
*
5020325 TCGCTGGCCATGAATCAACACATTG
66 TCGCTAGCCATGAATCAACACATTG
5020350 TCATTTTTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
98 73 0.95
99 4 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (99 bp):
TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATAGTGGCACCGTCATCTTTAAGACCAACG
TCGCTAGCCATGAATCAACACATTGGCATCTTCA
Found at i:5021159 original size:13 final size:13
Alignment explanation
Indices: 5021141--5021197 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
5021131 CATAAAGTGT
5021141 TGTATCGATACAA
1 TGTATCGATACAA
5021154 TGTATCGATACATAA
1 TGTATCGATAC--AA
5021169 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
5021186 TGTATCGATACA
1 TGTATCGATACA
5021198 TAAGTTTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5021176 original size:32 final size:32
Alignment explanation
Indices: 5021121--5021221 Score: 175
Period size: 32 Copynumber: 3.1 Consensus size: 32
5021111 TTCAACGATT
5021121 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
5021154 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
5021186 TGTATCGATACATAAGTTTTATATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
5021218 TGTA
1 TGTA
5021222 AGCTACTACT
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 53 0.80
33 13 0.20
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:5021178 original size:19 final size:18
Alignment explanation
Indices: 5021119--5021216 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
5021109 ATTTCAACGA
5021119 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
5021138 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
5021154 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
5021170 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
5021186 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
5021202 TTTTATATCGATACA
1 -TTTGTATCGATACA
5021217 ATGTAAGCTA
Statistics
Matches: 65, Mismatches: 1, Indels: 26
0.71 0.01 0.28
Matches are distributed among these distances:
13 22 0.34
15 4 0.06
17 4 0.06
19 23 0.35
20 12 0.18
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:5021278 original size:13 final size:13
Alignment explanation
Indices: 5021260--5021284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5021250 ATTACTCAAA
5021260 TGTATCGATACAT
1 TGTATCGATACAT
5021273 TGTATCGATACA
1 TGTATCGATACA
5021285 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5021387 original size:52 final size:52
Alignment explanation
Indices: 5021293--5021420 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
5021283 CACTGATCTT
*
5021293 TGTATCGATACATGCA-GCAAATTTGCCTAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
5021344 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
5021396 TGTATCAATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
5021421 TCATATTTCG
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 16 0.22
52 57 0.78
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:5022206 original size:13 final size:13
Alignment explanation
Indices: 5022188--5022213 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5022178 ACACCAAAGT
5022188 ATGTATCGATACA
1 ATGTATCGATACA
5022201 ATGTATCGATACA
1 ATGTATCGATACA
5022214 CAAAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5022228 original size:33 final size:33
Alignment explanation
Indices: 5022169--5022233 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
5022159 TAGCCAAACT
* * *
5022169 TGTATCGATACACCAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAATATATATCGATACAA
5022202 TGTATCGATACACAAAAA-ATTATATCGATACA
1 TGTATCGATACACAAAAATA-TATATCGATACA
5022234 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATATATCGATACAA
Found at i:5028572 original size:20 final size:20
Alignment explanation
Indices: 5028529--5028574 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
5028519 AAATCTTTTG
5028529 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
5028550 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
5028570 CAAAA
1 CAAAA
5028575 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:5030220 original size:23 final size:23
Alignment explanation
Indices: 5030192--5030237 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
5030182 AATAGATGTA
5030192 TGTGCAAATAAATTTTTGATATG
1 TGTGCAAATAAATTTTTGATATG
5030215 TGTGCAAATAAATTTTTGATATG
1 TGTGCAAATAAATTTTTGATATG
5030238 AATTACTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.43
Consensus pattern (23 bp):
TGTGCAAATAAATTTTTGATATG
Done.