Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3599867
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 51021 characters in sequence are not A, C, G, or T
File 10 of 25
Found at i:1400483 original size:65 final size:64
Alignment explanation
Indices: 1400329--1400487 Score: 205
Period size: 65 Copynumber: 2.5 Consensus size: 64
1400319 AAGTTATTAA
* **
1400329 GAGGTTCTATCTTAGCCTTGAAAGATAGTGTAGAAGTTCTATCTTAGCCTTTGTAAAAGATAGG
1 GAGGTTCTATCTTAGCCTTGAAAGATAGTGGAGAAGTTCTATCTTAGCCCGTGTAAAAGATAGG
* * **
1400393 GAGGTTTTGTCTTAGCCTACAAAAGATAG-GGAGAAAAGTTCTATCTTAGCCCGTG-AAAAGATA
1 GAGGTTCTATCTTAGCCT-TGAAAGATAGTGGAG--AAGTTCTATCTTAGCCCGTGTAAAAGATA
1400456 GG
63 GG
1400458 GAGGTCTCTATCTTAGCCTTGAAAGATAGT
1 GAGGT-TCTATCTTAGCCTTGAAAGATAGT
1400488 ATTGTAAGGT
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
64 19 0.24
65 31 0.39
66 29 0.37
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (64 bp):
GAGGTTCTATCTTAGCCTTGAAAGATAGTGGAGAAGTTCTATCTTAGCCCGTGTAAAAGATAGG
Found at i:1401435 original size:153 final size:153
Alignment explanation
Indices: 1401149--1401432 Score: 322
Period size: 153 Copynumber: 1.8 Consensus size: 153
1401139 TGAAATAATT
* * * * * * **
1401149 TGAATTTTTCAAAATTGATTTAATTTGAATTTAATGAAAATATTAGACGAATTTTAAAAATTTTA
1 TGAATTTTTAAAAAATGAATTAATATGAAATAAATGAAAATATTAGACGAATTTTAAAAATTAAA
* * * ** * * * *
1401214 AACCGAGAAAAATCCCTCCGAAAACATTTATGGAATAGAAAATTTGGTTTTTTGATAATAGAAAA
66 AACCAAGAAAAATCCCCCCAAAAACATTTATCAAATAGAAAACTTAGTTTTTGGAAAATAGAAAA
1401279 ATTTTGAAACTTAGGAAAATAAA
131 ATTTTGAAACTTAGGAAAATAAA
* *
1401302 TGAATTTTTAAAAAATGAATTAATATGAAATAAAT-AATAATATTTGATGAATTTTAAAAATTAA
1 TGAATTTTTAAAAAATGAATTAATATGAAATAAATGAA-AATATTAGACGAATTTTAAAAATTAA
* *
1401366 AAACTAAGAAAAATCCCCCCAAAAATATTTA-CAAAGTAGAAAACTTAGTATTTTGGAAACAT-G
65 AAACCAAGAAAAATCCCCCCAAAAACATTTATCAAA-TAGAAAACTTAGT-TTTTGGAAA-ATAG
1401429 AAAA
127 AAAA
1401433 TTTGAAGGAA
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
152 4 0.04
153 88 0.83
154 12 0.11
155 2 0.02
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (153 bp):
TGAATTTTTAAAAAATGAATTAATATGAAATAAATGAAAATATTAGACGAATTTTAAAAATTAAA
AACCAAGAAAAATCCCCCCAAAAACATTTATCAAATAGAAAACTTAGTTTTTGGAAAATAGAAAA
ATTTTGAAACTTAGGAAAATAAA
Found at i:1401687 original size:166 final size:159
Alignment explanation
Indices: 1401293--1402061 Score: 797
Period size: 166 Copynumber: 4.7 Consensus size: 159
1401283 TGAAACTTAG
* *
1401293 GAAAATAAATGAATTTTTAAAAAATGAATTAATATGAAATAAATAATAATATTTGATGAATTTTA
1 GAAAATGAATGAATTTTT-AAAAATGAATTAATATGAATTAAATAATAATATTTGATGAATTTTA
* * * * *
1401358 AAAATTAAAAACTAAGAAAAATCCCCCCAAAAATATTTACAAAGTAGAAAACTTAGTATTTTGGA
65 AAAATTAAAAACCAAGAAAAAT-CCCCCAAAAATATTTACGAAGTAGAAAATTTA-TATTTCGAA
* * *
1401423 AACATGAAAATTTGAAGGAAAAAAATAAAAAATGAAT
128 AACA-AAAAATTT-CA--AAAAAAATGAAAAAT-AAT
* * *
1401460 GAAAATGAATGAATTTTTGAAAACGAATTTAATATAAATTAAATAATAATATTTGATGAATTTTA
1 GAAAATGAATGAATTTTTAAAAATGAA-TTAATATGAATTAAATAATAATATTTGATGAATTTTA
** * *
1401525 TCAATTAAAAACCAAGAAAAATCCCCTAGAAAATATTTACGGAGTA-AGAAATTTCATATTTCGA
65 AAAATTAAAAACCAAGAAAAATCCCCCA-AAAATATTTACGAAGTAGA-AAATTT-ATATTTCGA
*
1401589 AAATAAAAGAATTTCAAGGAAAAAATGAAAAATGAAT
127 AAACAAAA-AATTTCAA--AAAAAATGAAAAAT-AAT
*
1401626 GAAAATGAATGAATTTTTGAAAAATGAATTAATATGAATTAAATAATAATATTTTATGAATTTTA
1 GAAAATGAATGAATTTTT-AAAAATGAATTAATATGAATTAAATAATAATATTTGATGAATTTTA
* * * *
1401691 AAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAAATCTGTATTTTGAA
65 AAAATTAAAAACCAAGAAAAATCCC-CCAAAAATATTTACGAAGTAG-AAAATTTATATTTCGAA
*
1401756 AACAAGAAAATTTCAAAAAAAATGAAAAACTCAT
128 AACAA-AAAATTTCAAAAAAAATGAAAAA-TAAT
* * *
1401790 GAAATTGAATGAATTTTTAAAAATGGATTTAATATGAATTAAATAATAATATTTGATAAATTTTA
1 GAAAATGAATGAATTTTTAAAAAT-GAATTAATATGAATTAAATAATAATATTTGATGAATTTTA
* * * * *
1401855 AAAATT-AAAATCAAGAGAAATCCATCCGAAAATATTTATGGAA-TAGAAAACTTTATATTTCGA
65 AAAATTAAAAACCAAGAAAAATCC-CCCAAAAATATTTA-CGAAGTAGAAAA-TTTATATTTCGA
** * *
1401918 AAACAGAGGAATTTC-AAAAAAAT-----CTCAT
127 AAACA-AAAAATTTCAAAAAAAATGAAAAATAAT
* * *
1401946 GAAAATGAATGAATTTTTAAAAACT-AATTTAATAAGAATTAAATAATAGTTTTTGATGAATTTT
1 GAAAATGAATGAATTTTTAAAAA-TGAA-TTAATATGAATTAAATAATAATATTTGATGAATTTT
* * *
1402010 AAAATTTAAAAACCATA-AAAAATCTCTCCAAAAACATTTACGGAA-TAGAAAA
64 AAAAATTAAAAACCA-AGAAAAATC-CCCCAAAAATATTTAC-GAAGTAGAAAA
1402062 CTCCGTATTA
Statistics
Matches: 518, Mismatches: 60, Indels: 58
0.81 0.09 0.09
Matches are distributed among these distances:
155 1 0.00
156 64 0.12
157 35 0.07
158 2 0.00
162 12 0.02
163 55 0.11
164 80 0.15
165 1 0.00
166 144 0.28
167 122 0.24
168 2 0.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (159 bp):
GAAAATGAATGAATTTTTAAAAATGAATTAATATGAATTAAATAATAATATTTGATGAATTTTAA
AAATTAAAAACCAAGAAAAATCCCCCAAAAATATTTACGAAGTAGAAAATTTATATTTCGAAAAC
AAAAAATTTCAAAAAAAATGAAAAATAAT
Found at i:1401714 original size:333 final size:318
Alignment explanation
Indices: 1401293--1402100 Score: 941
Period size: 333 Copynumber: 2.5 Consensus size: 318
1401283 TGAAACTTAG
* * *
1401293 GAAAATAAATGAATTTTTAAAAAATGAATTAATATGAAATAAATAATAATATTTGATGAATTTTA
1 GAAAATGAATGAATTTTT-AAAAATGAATTAATATGAATTAAATAATAATATTTTATGAATTTTA
* * * * *
1401358 AAAATTAAAAACTAAGAAAAATCCCCCCAAAAATATTTACAAAGTAGAAAACT-TAGTATTTTGG
65 AAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAACTCT-GTATTTTGA
* *
1401422 AAACATGAAAATTTGAAGGAAAAAAAT-AAAAAATGAATGAAAATGAATGAATTTTTGAAAACGA
129 AAACAAGAAAATTT-AA--AAAAAAATGAAAAAAT-AATGAAAATGAATGAATTTTTAAAAACGA
* **
1401486 ATTTAATATAAATTAAATAATAATATTTGATGAATTTTATCAATTAAAAACCAAGAAAAATCC-C
190 ATTTAATATAAATTAAATAATAATATTTGATAAATTTTAAAAATT-AAAACCAAGAAAAATCCAC
* *
1401550 CTAGAAAATATTTACGGAGTA-AGAAA-TTTCATATTTCGAAAATAAAAGAATTTCAAGGAAAAA
254 C--GAAAATATTTACGGAATAGA-AAACTTT-ATATTTCGAAAACAAAAGAATTTC-A--AAAAA
1401613 ATGAAAAATGAAT
312 AT-----AT-AAT
1401626 GAAAATGAATGAATTTTTGAAAAATGAATTAATATGAATTAAATAATAATATTTTATGAATTTTA
1 GAAAATGAATGAATTTTT-AAAAATGAATTAATATGAATTAAATAATAATATTTTATGAATTTTA
*
1401691 AAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAAATCTGTATTTTGAA
65 AAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAACTCTGTATTTTGAA
* * * * * *
1401756 AACAAGAAAATTTCAAAAAAAATGAAAAACTCATGAAATTGAATGAATTTTTAAAAATGGATTTA
130 AACAAGAAAATTTAAAAAAAAATGAAAAAATAATGAAAATGAATGAATTTTTAAAAACGAATTTA
* * *
1401821 ATATGAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAATCAAGAGAAATCCATCCGAAA
195 ATATAAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAACCAAGAAAAATCCA-CCGAAA
* * * * *
1401886 ATATTTATGGAATAGAAAACTTTATATTTCGAAAACAGAGGAATTTCAAAAAAATCTCAT
259 ATATTTACGGAATAGAAAACTTTATATTTCGAAAACAAAAGAATTTCAAAAAAATATAAT
* *
1401946 GAAAATGAATGAATTTTTAAAAACT-AATTTAATAAGAATTAAATAATAGT-TTTTGATGAATTT
1 GAAAATGAATGAATTTTTAAAAA-TGAA-TTAATATGAATTAAATAATAATATTTT-ATGAATTT
* * * *
1402009 TAAAATTTAAAAACCATA-AAAAATCTCTCCAAAAACATTTACGGAA-TAGAAAACTCCGTATTA
63 TAAAAATTAAAAACCA-AGAAAAATCCCTCCAAAAACATTTAC-GAAGTAGAAAACTCTGTATTT
* * *
1402072 CGAAAATAAGAAAAATTGTAAAAGAAAAT
126 TGAAAACAAG-AAAATT-TAAAAAAAAAT
1402101 CAATAGCTAA
Statistics
Matches: 420, Mismatches: 42, Indels: 37
0.84 0.08 0.07
Matches are distributed among these distances:
319 11 0.03
320 109 0.26
321 11 0.03
322 9 0.02
326 7 0.02
328 1 0.00
329 55 0.13
330 77 0.18
331 8 0.02
332 1 0.00
333 130 0.31
334 1 0.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (318 bp):
GAAAATGAATGAATTTTTAAAAATGAATTAATATGAATTAAATAATAATATTTTATGAATTTTAA
AAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAACTCTGTATTTTGAAA
ACAAGAAAATTTAAAAAAAAATGAAAAAATAATGAAAATGAATGAATTTTTAAAAACGAATTTAA
TATAAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAACCAAGAAAAATCCACCGAAAAT
ATTTACGGAATAGAAAACTTTATATTTCGAAAACAAAAGAATTTCAAAAAAATATAAT
Found at i:1402061 original size:320 final size:317
Alignment explanation
Indices: 1401115--1402085 Score: 1002
Period size: 320 Copynumber: 3.0 Consensus size: 317
1401105 GAAAATTAAT
* * * * *
1401115 ATTTACAAAAAAAATCAAAATTCATGAAAT-AATTTGAATTTTTCAAAATTGATTTAATTTGAAT
1 ATTTACAAAAAAAATAAAAAATCATGAAATGAA--TGAATTTTTAAAAATGGATTTAATATGAAT
* * * * * *
1401179 TTAATGAA-AATATTAGACGAATTTTAAAAATTTTAAACCGAGAAAAATCCCTCCGAAAACATTT
64 TAAAT-AATAATATTTGATGAATTTTAAAAA-TTAAAACCAAGAAAAAT-CCTCCGAAAATATTT
** * * * * ** * * *
1401243 ATGGAATAGAAAATTTGGTTTTTTGATAATAGAAAAATTT---TGAAA-CTTAGGAAAATAAATG
126 ATGGAATAGAAAATTTCATATTTCGAAAATAGAAGAATTTCAAAAAAATCTAATGAAAATGAATG
* *
1401304 AATTTTTAAAAAATGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAA
191 AATTTTT-AAAAATGAATTAATATGAATTAAATAATAATTTTTGATGAATTTTAAAAATTAAAAA
* * * * * *
1401369 CTAAGAAAAATCCCCCCAAAAATATTTACAAAGTAGAAAACT-TAGTATTTTGGAAACATGAAA
255 CCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAACTCT-GTATTTTGAAAACAAGAAA
* * * * *
1401432 ATTTGA-AGGAAAAAAATAAAAAATGAATGAAAATGAATGAATTTTTGAAAACGAATTTAATATA
1 ATTT-ACA--AAAAAAATAAAAAAT-CATG-AAATGAATGAATTTTTAAAAATGGATTTAATATG
**
1401496 AATTAAATAATAATATTTGATGAATTTTATCAATTAAAAACCAAGAAAAATCC-CCTAGAAAATA
61 AATTAAATAATAATATTTGATGAATTTTAAAAATT-AAAACCAAGAAAAATCCTCC--GAAAATA
* * * *
1401560 TTTACGGAGTA-AGAAATTTCATATTTCGAAAATAAAAGAATTTCAAGGAAAAAATGAAAAATGA
123 TTTATGGAATAGA-AAATTTCATATTTCGAAAATAGAAGAATTTC-A--AAAAAAT-----CT-A
1401624 ATGAAAATGAATGAATTTTTGAAAAATGAATTAATATGAATTAAATAATAATATTTT-ATGAATT
178 ATGAAAATGAATGAATTTTT-AAAAATGAATTAATATGAATTAAATAATAAT-TTTTGATGAATT
*
1401688 TTAAAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAAATCTGTATTTT
241 TTAAAAATTAAAAACCAAGAAAAATCCCTCCAAAAACATTTACGAAGTAGAAAACTCTGTATTTT
1401753 GAAAACAAGAAA
306 GAAAACAAGAAA
*
1401765 ATTT-CAAAAAAAATGAAAAACTCATGAAATTGAATGAATTTTTAAAAATGGATTTAATATGAAT
1 ATTTACAAAAAAAAT-AAAAAATCATGAAA-TGAATGAATTTTTAAAAATGGATTTAATATGAAT
* * *
1401829 TAAATAATAATATTTGATAAATTTTAAAAATTAAAATCAAGAGAAATCCATCCGAAAATATTTAT
64 TAAATAATAATATTTGATGAATTTTAAAAATTAAAACCAAGAAAAATCC-TCCGAAAATATTTAT
* * *
1401894 GGAATAGAAAACTTT-ATATTTCGAAAACAGAGGAATTTCAAAAAAATCTCATGAAAATGAATGA
128 GGAATAGAAAA-TTTCATATTTCGAAAATAGAAGAATTTCAAAAAAATCTAATGAAAATGAATGA
* * *
1401958 ATTTTTAAAAACT-AATTTAATAAGAATTAAATAATAGTTTTTGATGAATTTTAAAATTTAAAAA
192 ATTTTTAAAAA-TGAA-TTAATATGAATTAAATAATAATTTTTGATGAATTTTAAAAATTAAAAA
* * ** *
1402022 CCATA-AAAAATCTCTCCAAAAACATTTACGGAA-TAGAAAACTCCGTATTACGAAAATAAGAAA
255 CCA-AGAAAAATCCCTCCAAAAACATTTAC-GAAGTAGAAAACTCTGTATTTTGAAAACAAGAAA
1402085 A
1 A
1402086 ATTGTAAAAG
Statistics
Matches: 547, Mismatches: 69, Indels: 73
0.79 0.10 0.11
Matches are distributed among these distances:
317 5 0.01
318 3 0.01
319 31 0.06
320 213 0.39
321 9 0.02
322 2 0.00
326 10 0.02
328 1 0.00
329 58 0.11
330 74 0.14
331 8 0.01
332 2 0.00
333 127 0.23
334 4 0.01
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (317 bp):
ATTTACAAAAAAAATAAAAAATCATGAAATGAATGAATTTTTAAAAATGGATTTAATATGAATTA
AATAATAATATTTGATGAATTTTAAAAATTAAAACCAAGAAAAATCCTCCGAAAATATTTATGGA
ATAGAAAATTTCATATTTCGAAAATAGAAGAATTTCAAAAAAATCTAATGAAAATGAATGAATTT
TTAAAAATGAATTAATATGAATTAAATAATAATTTTTGATGAATTTTAAAAATTAAAAACCAAGA
AAAATCCCTCCAAAAACATTTACGAAGTAGAAAACTCTGTATTTTGAAAACAAGAAA
Found at i:1406128 original size:66 final size:64
Alignment explanation
Indices: 1405846--1406171 Score: 238
Period size: 65 Copynumber: 5.1 Consensus size: 64
1405836 AATCAGAAAG
* * * * * * *
1405846 GGTTGATTAGGGC-AAACTTAAT-AAGTCAAC-AAGGGTGACAAGGTAGAACCTAAGTTGAAAAT
1 GGTTGACTAAGGCAAAAC-TAATAAAGTCAACTAAAGGTGACCAGGT-GAAACTAAGTCGAAAAA
1405908 A
64 A
* ** * * * **
1405909 GGTTGACCAAGGCAAAACTGGTAAAGT---CTAAGGGTGACTAAGGTGAAACTTAGTCGAAAAGT
1 GGTTGACTAAGGCAAAACTAATAAAGTCAACTAAAGGTGAC-CAGGTGAAACTAAGTCGAAAAAA
* * * *
1405971 GGTTAACT-AGTGTAAAACCAATAAAGTCAACTAAGGGTGACCAAGGTGAAACTAAGTCGAAAAA
1 GGTTGACTAAG-GCAAAACTAATAAAGTCAACTAAAGGTGACC-AGGTGAAACTAAGTCGAAAAA
1406035 A
64 A
* * * * *
1406036 GGTTGACTAGGGCAAAA-TCGATAAAGTTAACTAAATGTGACCAGGATGAAACGTAAGTCGATAA
1 GGTTGACTAAGGCAAAACT-AATAAAGTCAACTAAAGGTGACCAGG-TGAAAC-TAAGTCGAAAA
*
1406100 GA
63 AA
* * *
1406102 TGTTGACTAAGGCAAAACTAAGAAAGTCAACTAAAGGTGACTAGGGTGAAACTTAAGTC-AAAAA
1 GGTTGACTAAGGCAAAACTAATAAAGTCAACTAAAGGTGACCA-GGTGAAAC-TAAGTCGAAAAA
1406166 GA
64 -A
1406168 GGTT
1 GGTT
1406172 AATCAGGGCG
Statistics
Matches: 206, Mismatches: 41, Indels: 29
0.75 0.15 0.11
Matches are distributed among these distances:
61 3 0.01
62 40 0.19
63 17 0.08
64 11 0.05
65 70 0.34
66 62 0.30
67 3 0.01
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (64 bp):
GGTTGACTAAGGCAAAACTAATAAAGTCAACTAAAGGTGACCAGGTGAAACTAAGTCGAAAAAA
Found at i:1406194 original size:66 final size:66
Alignment explanation
Indices: 1405936--1406194 Score: 233
Period size: 66 Copynumber: 4.0 Consensus size: 66
1405926 CTGGTAAAGT
* * * * * * *
1405936 CTAAGGGTGACTAAGGTGAAACTT-AGTCGAAAAGTGGTTAACTAGTGTAAAACCAATAAAGTCA
1 CTAAAGGTGACCAAGGTGAAACTTAAGTCAAAAAGAGGTTAACTAGGGCAAAATCAATAAAGTCA
1406000 A
66 A
* * * *
1406001 CTAAGGGTGACCAAGGTGAAAC-TAAGTCGAAAAA-AGGTTGACTAGGGCAAAATCGATAAAGTT
1 CTAAAGGTGACCAAGGTGAAACTTAAGTC-AAAAAGAGGTTAACTAGGGCAAAATCAATAAAGTC
1406064 AA
65 AA
* * * * * * * *
1406066 CTAAATGTGACC-AGGATGAAACGTAAGTCGATAAGATGTTGACTAAGGCAAAA-CTAAGAAAGT
1 CTAAAGGTGACCAAGG-TGAAACTTAAGTCAAAAAGAGGTTAACTAGGGCAAAATC-AATAAAGT
1406129 CAA
64 CAA
* * * *
1406132 CTAAAGGTGACTAGGGTGAAACTTAAGTCAAAAAGAGGTTAA-TCAGGGCGAAATCGATAAAGT
1 CTAAAGGTGACCAAGGTGAAACTTAAGTCAAAAAGAGGTTAACT-AGGGCAAAATCAATAAAGT
1406195 AAACAAGTTT
Statistics
Matches: 155, Mismatches: 30, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
64 4 0.03
65 70 0.45
66 78 0.50
67 3 0.02
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.20
Consensus pattern (66 bp):
CTAAAGGTGACCAAGGTGAAACTTAAGTCAAAAAGAGGTTAACTAGGGCAAAATCAATAAAGTCA
A
Found at i:1406343 original size:32 final size:32
Alignment explanation
Indices: 1406302--1406451 Score: 115
Period size: 32 Copynumber: 4.6 Consensus size: 32
1406292 AAAGTCAGCT
* *
1406302 AAGGGTGACCACGGTAAAACCTAAATCAAAAA
1 AAGGTTGACCAAGGTAAAACCTAAATCAAAAA
* * **
1406334 AAGGTTGACCAAAGTAAAATCGATAAAGTCAACTA
1 AAGGTTGACCAAGGTAAAA-C-CTAAA-TCAAAAA
* * * * * *
1406369 AAGG-TGACTAGGGCAAAATCTAAGTTAAAAA
1 AAGGTTGACCAAGGTAAAACCTAAATCAAAAA
* * *
1406400 AAGATTGACCAAGGTGAAACCTAAGT-AAAAA
1 AAGGTTGACCAAGGTAAAACCTAAATCAAAAA
1406431 AAGGGTTGACCAAGGTAAAAC
1 AA-GGTTGACCAAGGTAAAAC
1406452 TGATAAAGCC
Statistics
Matches: 89, Mismatches: 24, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
31 14 0.16
32 51 0.57
33 1 0.01
34 14 0.16
35 9 0.10
ACGTcount: A:0.49, C:0.14, G:0.21, T:0.17
Consensus pattern (32 bp):
AAGGTTGACCAAGGTAAAACCTAAATCAAAAA
Found at i:1406375 original size:66 final size:66
Alignment explanation
Indices: 1406288--1406411 Score: 167
Period size: 66 Copynumber: 1.9 Consensus size: 66
1406278 AAGGTGAAAC
* * * *
1406288 CGATAAAGTCAGCTAAGGGTGACCACGGTAAAACCTAAATCAAAAAAAGGTTGACCAAAGTAAAA
1 CGATAAAGTCAACTAAAGGTGACCACGGCAAAACCTAAATCAAAAAAAGATTGACCAAAGTAAAA
1406353 T
66 T
* * * * *
1406354 CGATAAAGTCAACTAAAGGTGACTAGGGCAAAATCTAAGTTAAAAAAAGATTGACCAA
1 CGATAAAGTCAACTAAAGGTGACCACGGCAAAACCTAAATCAAAAAAAGATTGACCAA
1406412 GGTGAAACCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (66 bp):
CGATAAAGTCAACTAAAGGTGACCACGGCAAAACCTAAATCAAAAAAAGATTGACCAAAGTAAAA
T
Found at i:1407584 original size:79 final size:79
Alignment explanation
Indices: 1407446--1407674 Score: 291
Period size: 78 Copynumber: 2.9 Consensus size: 79
1407436 TGGAAATGAC
* * * * *
1407446 AACGGGGCTGGAGTATCCCTTGACTCTGAAAAATCGATGTTCTAGAAATAAAATCAGGGTTGGAG
1 AACGGGGTTGGAGTATCCC-TGATTGTGAAAAATCGGTGTTTTAGAAATAAAATCAGGGTTGGAG
*
1407511 TATCCCCTTGAAAAT
65 TATCCCCTCGAAAAT
* *
1407526 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAA-CTAGGGTTGGAG
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAATCGGTGTTTTAGAAATAAAATC-AGGGTTGGAG
*
1407590 TAT-CTCTCGAAAAT
65 TATCCCCTCGAAAAT
* * * * * *
1407604 AACAGGGTTGAACTATCCTTGATTGTGAAAAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAATCGGTGTTTTAGAAATAAAATCAGGGTTGGAGT
1407669 ATCCCC
66 ATCCCC
1407675 GATTGTGAGA
Statistics
Matches: 128, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
78 67 0.52
79 43 0.34
80 18 0.14
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCTGATTGTGAAAAATCGGTGTTTTAGAAATAAAATCAGGGTTGGAGT
ATCCCCTCGAAAAT
Found at i:1407674 original size:129 final size:128
Alignment explanation
Indices: 1407528--1407856 Score: 389
Period size: 129 Copynumber: 2.6 Consensus size: 128
1407518 TTGAAAATAA
** * * *
1407528 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAACTAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACTGGGGTTGGAGTAT
* * * *
1407593 CTCTCGAAAATAACAGGG-TT-GAACTATCCTTGATTGTGAAAAATTGGTGTTTTAGAAATAAAA
66 C-CTCGAAAATAAC-GGGATTGGAA-TATCCTCGATTATGAAAAATTGATGTCTTAGAAATAAAA
*
1407656 T
128 C
* *
1407657 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGCTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACTGGGGTTGGAGTAT
* * *
1407722 CCCTTCGGAAATAACGGGATTGGAATATCCTCGATTATGAGAAATTGATGTCTTGGAAATAAAAC
66 -CC-TCGAAAATAACGGGATTGGAATATCCTCGATTATGAAAAATTGATGTCTTAGAAATAAAAC
* * * *
1407787 CAGAGTTAGAGTATCCCCGA--GATGAAAAATCAATATTTTAGAAAT-AAAGTCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTG-TGAAAAATCAATATTTTAGAAATAAAACT-GGGGTTGGAGT
1407849 ATCCTCGA
64 ATCCTCGA
1407857 GATGAAAATC
Statistics
Matches: 172, Mismatches: 22, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
127 3 0.02
128 6 0.03
129 97 0.56
130 63 0.37
131 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (128 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTAGAAATAAAACTGGGGTTGGAGTAT
CCTCGAAAATAACGGGATTGGAATATCCTCGATTATGAAAAATTGATGTCTTAGAAATAAAAC
Found at i:1407679 original size:51 final size:51
Alignment explanation
Indices: 1407624--1407724 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
1407614 AACTATCCTT
*** * *
1407624 GATTGTGAAAAATTGGTGTTTTAGAAATAAA-ATCGGGGTTGGAGTATCCCC
1 GATTGTGAAAAATCAATATTTTAGAAATAAAGCT-GGGGTTGGAGTATCCCC
*
1407675 GATTGTGAGAAATCAATATTTTAGAAATAAAGCTGGGGTTGGAGTATCCC
1 GATTGTGAAAAATCAATATTTTAGAAATAAAGCTGGGGTTGGAGTATCCC
1407725 TTCGGAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (51 bp):
GATTGTGAAAAATCAATATTTTAGAAATAAAGCTGGGGTTGGAGTATCCCC
Found at i:1410955 original size:61 final size:60
Alignment explanation
Indices: 1410890--1411509 Score: 673
Period size: 61 Copynumber: 10.5 Consensus size: 60
1410880 GGACTAGCAG
* * ** * * * *
1410890 GTGCCACCAACTTATATGGGCTTTGCAAGGAGAAAGCATCCTACTTTTTGAGGACTGGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCGTCCTGCTCTTTGAGGACTGGAAA
* *
1410951 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGCGTCCTACTCTTTGAGGACTAGAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCGTCCTGCTCTTTGAGGACT-GGAAA
* * *
1411013 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACTAGAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCGTCCTGCTCTTTGAGGACTGGAAA
* *
1411074 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGCTGTTTGAGGACTGGGAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG-CGTCCTGCTCTTTGAGGACTGGAAA
* * **
1411135 GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCGTCCTGCTCTTTGAGGACTGGAAA
* * *
1411196 CTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT-GAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCGTCCTGCTCTTTGAGGACTGGAAA
* * * * *
1411256 GTGTCACCAGCTTGTGTGGGCTTT-----GAAAGGCATCCTGCTCTTTGAGGACTGAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCGTCCTGCTCTTTGAGGACTGGAAA
* *
1411311 ATGCCACCAACTTGTGTGGGCTTT-----GAAAGGCGTCCTGCTCTTTGAGGACTAGG-AA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCGTCCTGCTCTTTGAGGACT-GGAAA
* * *
1411366 GTGCCACCAACTTGTGTAGGTTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCGTCCTGCTCTTTGAGGACTGGAAA
* * * * **
1411426 GTGCCACTAGCTTGTGTAGGCTTT-----GAAAGGCGTCCTGCTCTTTGAGGACTAAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCGTCCTGCTCTTTGAGGACTGGAAA
* *
1411481 ATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAG
1411510 ACGTCCTACT
Statistics
Matches: 481, Mismatches: 58, Indels: 41
0.83 0.10 0.07
Matches are distributed among these distances:
54 40 0.08
55 101 0.21
56 1 0.00
59 1 0.00
60 55 0.11
61 227 0.47
62 54 0.11
63 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (60 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCGTCCTGCTCTTTGAGGACTGGAAA
Found at i:1411340 original size:115 final size:116
Alignment explanation
Indices: 1410920--1411530 Score: 637
Period size: 115 Copynumber: 5.2 Consensus size: 116
1410910 CTTTGCAAGG
* * * *
1410920 AGAAA-GCATCCTACTTTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
1 AGAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
* *
1410984 ATGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
66 AGGCGTCCTGCTCTTTGAGGACTAG--AAGTGCCACCAACTTGTGTGGGCTTT
1411037 AAAAGGAGAAGGCATCCTGCTCTTTGAGGACT-AGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
1 ---A-GA-AAGGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTAAA
* * * *
1411101 AGGAAAAGACGTCCTGCTGTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTT
60 AGGAAAAGGCGTCCTGCTCTTTGAGGACT-AGAAGTGCCACCAACTTGTGTGGGCTTT
* *
1411159 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAACTGCCACCAACTTGTGTGGGCTTTAAAA
1 ---A-G-AAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * *
1411224 GGAAAAGGTGTCCTGCTCTTTGAGGACT-GAAGGTGTCACCAGCTTGTGTGGGCTTT
61 GGAAAAGGCGTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTT
*
1411280 -GAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT-----G-AA
1 AGAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
* *
1411338 AGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTAGGTTTT
66 AGGCGTCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
1411390 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACTAGCTTGTGTAGGCTTT----
1 ---A-G-AAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* *
1411450 -G-AAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
61 GGAAAAGGCGTCCTGCTCTTTGAGGACT-AGAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
1411505 -GAAAGACGTCCTACTTTTTGAGGACT
1 AGAAAGGCATCCTGCTCTTTGAGGACT
1411531 AAAGGGTGAA
Statistics
Matches: 437, Mismatches: 37, Indels: 45
0.84 0.07 0.09
Matches are distributed among these distances:
109 46 0.11
110 22 0.05
111 3 0.01
115 124 0.28
116 27 0.06
120 4 0.01
121 23 0.05
122 112 0.26
123 75 0.17
124 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (116 bp):
AGAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
AGGCGTCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:1411400 original size:170 final size:172
Alignment explanation
Indices: 1410921--1411531 Score: 746
Period size: 170 Copynumber: 3.5 Consensus size: 172
1410911 TTTGCAAGGA
* * * **
1410921 GAAA-GCATCCTACTTTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
1 GAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT---A-GAAAA
* *
1410985 TGCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
62 GGCGTCCTACTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * *
1411050 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
126 GTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTT
* * * ** * *
1411098 AAAAGGAAAAGACGTCCTGCTGTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAA
1 -----G-AAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT---A
* * * *
1411163 GGAAAAGGCATCCTGCTCTTTGAGGACTAAAAACTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
57 -GAAAAGGCGTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
* *
1411228 AAGGTGTCCTGCTCTTTGAGGACTGAAGGTGTCACCAGCTTGTGTGGGCTTT
121 AAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT
1411280 GAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGGCG
1 GAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCG
* * * *
1411343 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTAGGTTTTAAAAGGAAAAGGCGTCCT
66 TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* *
1411408 GCTCTTTGAGGACTGAAGGTGCCACTAGCTTGTGTAGGCTTT
131 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT
* * *
1411450 GAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGACG
1 GAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCG
*
1411513 TCCTACTTTTTGAGGACTA
66 TCCTACTCTTTGAGGACTA
1411532 AAGGGTGAAA
Statistics
Matches: 387, Mismatches: 40, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
170 181 0.47
171 1 0.00
176 47 0.12
177 1 0.00
182 26 0.07
183 58 0.15
184 73 0.19
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (172 bp):
GAAAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCG
TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT
Found at i:1412618 original size:21 final size:21
Alignment explanation
Indices: 1412594--1412650 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
1412584 CTTATGCAGG
1412594 TTCTTTCCTTTTCTTTTTT-TT
1 TTCTTT-CTTTTCTTTTTTGTT
* *
1412615 TTCTTTGTTTTGTTTTTTGTT
1 TTCTTTCTTTTCTTTTTTGTT
*
1412636 TT-TTTGTTTT-TTTTT
1 TTCTTTCTTTTCTTTTT
1412651 AAAAAAAGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.15
20 18 0.55
21 10 0.30
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (21 bp):
TTCTTTCTTTTCTTTTTTGTT
Found at i:1412630 original size:20 final size:19
Alignment explanation
Indices: 1412602--1412650 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
1412592 GGTTCTTTCC
1412602 TTTTCTTTTTT-TTTTCTTTG
1 TTTT-TTTTTTGTTTT-TTTG
1412622 TTTTGTTTTTTGTTTTTTTG
1 TTTT-TTTTTTGTTTTTTTG
1412642 TTTTTTTTT
1 TTTTTTTTT
1412651 AAAAAAAGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 18 0.67
21 4 0.15
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTGTTTTTTTG
Found at i:1412640 original size:8 final size:8
Alignment explanation
Indices: 1412610--1412648 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
1412600 CCTTTTCTTT
*
1412610 TTTTTTTC
1 TTTTTTTG
1412618 TTTGTTTTG
1 TTT-TTTTG
1412627 -TTTTTTG
1 TTTTTTTG
1412634 TTTTTTTG
1 TTTTTTTG
1412642 TTTTTTT
1 TTTTTTT
1412649 TTAAAAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 5 0.18
8 19 0.68
9 4 0.14
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1425213 original size:78 final size:78
Alignment explanation
Indices: 1425082--1425267 Score: 266
Period size: 78 Copynumber: 2.4 Consensus size: 78
1425072 TCGGTGTTCT
* *
1425082 AGAAATAAAATTAGGGTTGGAGTATCTCCTTGAAAATAACGGGGTTGGAGTATCACCGATTGTGA
1 AGAAATAAAA-TGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGTATCACCGATTGTGA
*
1425147 AAAATCAGTGTTTC
65 AAAATCAGTATTTC
* *
1425161 GGAAATAAAACTGGGGTTGGAGTATC-CCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGA
1 AGAAATAAAA-TGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGTATCACCGATTGTGA
** *
1425225 AAAATTGGTATTTT
65 AAAATCAGTATTTC
1425239 AGAAATAAAATCGGGGTTGGAGTATCTCC
1 AGAAATAAAAT-GGGGTTGGAGTATCTCC
1425268 GATTGTGAGA
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 69 0.73
79 25 0.26
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (78 bp):
AGAAATAAAATGGGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGTATCACCGATTGTGAA
AAATCAGTATTTC
Found at i:1425270 original size:51 final size:51
Alignment explanation
Indices: 1425199--1425314 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
1425189 TCGAAAATAA
*** * *
1425199 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTACAAATAAAAC
* * *
1425250 CGGGGTTGGAGTATCTCCGATTGTGAGAAATCAATATTTTACAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTACAAATAAAAC
1425301 CGGGGTTGGAGTAT
1 CGGGGTTGGAGTAT
1425315 TCCCTCGGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTTACAAATAAAAC
Found at i:1425384 original size:130 final size:129
Alignment explanation
Indices: 1425121--1425443 Score: 398
Period size: 129 Copynumber: 2.5 Consensus size: 129
1425111 TTGAAAATAA
* * *** * *
1425121 CGGGGTTGGAGTATCACCGATTGTGAAAAATCAGTGTTTCGGAAATAAAACTGGGGTTGGAGTA-
1 CGGGGTTGGAGTATC-CCGATTGTGAAAAATCAATATTTTAAAAATAAAGCCGGGGTTGGAGTAT
* * * * * *
1425185 TCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAAT
65 TCCCTCGAAAATAACGAGATTGGAGTATCCCCGATTATGAAAAATTGATATCTTAGAAATAAAAC
* *
1425250 CGGGGTTGGAGTATCTCCGATTGTGAGAAATCAATATTTTACAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATC-CCGATTGTGAAAAATCAATATTTTAAAAATAAAGCCGGGGTTGGAGTAT
* * * * *
1425315 TCCCTCGGAAATAACGAGATTGTAGTATCCTCGATTATGAAAAATTGATGTCTTGGAAATAAAAC
65 TCCCTCGAAAATAACGAGATTGGAGTATCCCCGATTATGAAAAATTGATATCTTAGAAATAAAAC
* * *
1425380 CGGGGTTAGAGTATCCCCA-AGATGAAAAATCAATATTTTAAAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCGATTG-TGAAAAATCAATATTTTAAAAATAAAGCCGGGGTTGGAGTAT
1425444 CCTCGAGATG
Statistics
Matches: 167, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
128 1 0.01
129 98 0.59
130 68 0.41
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (129 bp):
CGGGGTTGGAGTATCCCGATTGTGAAAAATCAATATTTTAAAAATAAAGCCGGGGTTGGAGTATT
CCCTCGAAAATAACGAGATTGGAGTATCCCCGATTATGAAAAATTGATATCTTAGAAATAAAAC
Found at i:1425408 original size:50 final size:50
Alignment explanation
Indices: 1425351--1425460 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
1425341 ATCCTCGATT
* * **
1425351 ATGAAAAATTGATGTCTTGGAAATAAAACCGGGGTTAGAGTATCCCCAAG
1 ATGAAAAATTAATATCTTAAAAATAAAACCGGGGTTAGAGTATCCCCAAG
* * * * * *
1425401 ATGAAAAATCAATATTTTAAAAATAAAGCCGGGGTTGGAGTATCCTCGAG
1 ATGAAAAATTAATATCTTAAAAATAAAACCGGGGTTAGAGTATCCCCAAG
1425451 ATGAAAAATT
1 ATGAAAAATT
1425461 TAGAAATTTA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (50 bp):
ATGAAAAATTAATATCTTAAAAATAAAACCGGGGTTAGAGTATCCCCAAG
Found at i:1427760 original size:20 final size:20
Alignment explanation
Indices: 1427735--1427838 Score: 82
Period size: 20 Copynumber: 4.8 Consensus size: 20
1427725 AAAATCCCTG
*
1427735 AATGTATCGATACATTGAAA
1 AATGTATCGATACAATGAAA
*
1427755 AATGTATCGATACATCTAAGTAAA
1 AATGTATCGATACA---ATG-AAA
* *
1427779 CCCAGAATGTATCGAAACAATGAAC
1 ---A--ATGTATCGATACAATGAAA
*
1427804 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAA
1427824 AATGTATCGATACAA
1 AATGTATCGATACAA
1427839 ATTGTGAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
20 47 0.68
22 1 0.01
23 1 0.01
24 3 0.04
25 2 0.03
26 2 0.03
27 1 0.01
29 12 0.17
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAATGAAA
Found at i:1428294 original size:35 final size:34
Alignment explanation
Indices: 1428247--1428358 Score: 90
Period size: 32 Copynumber: 3.4 Consensus size: 34
1428237 TGACTAGGAT
*
1428247 AAAACC-T-AAGTCAAAAAAAGGTTAACAAGGGA
1 AAAACCATAAAGTCAAAAAAAGGTTAACAAGGGC
*** * * *
1428279 AAAACCAATAAAGTC-AGCTAAGGGTGACCAGGGC
1 AAAACC-ATAAAGTCAAAAAAAGGTTAACAAGGGC
* *
1428313 AAAACC-T-AAGTCAAAAAAAAGTTAACTAGGGC
1 AAAACCATAAAGTCAAAAAAAGGTTAACAAGGGC
1428345 AAAACCGATAAAGT
1 AAAACC-ATAAAGT
1428359 TAACAAGTTT
Statistics
Matches: 59, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
31 5 0.08
32 25 0.42
34 20 0.34
35 9 0.15
ACGTcount: A:0.51, C:0.16, G:0.20, T:0.13
Consensus pattern (34 bp):
AAAACCATAAAGTCAAAAAAAGGTTAACAAGGGC
Found at i:1429004 original size:76 final size:76
Alignment explanation
Indices: 1428924--1429488 Score: 427
Period size: 76 Copynumber: 7.4 Consensus size: 76
1428914 GAATATAAGG
* * * ** * *
1428924 TTCTAAAATTTTCATTAATAGCTGAAACAGACTGATAACAGGCTGAGGGAAAA-GAACATGATGA
1 TTCTAAAATTTCCATTAACAACCAAAACAAACTGATAACAGGCTGA-AGAAAAGGAACATGATGA
1428988 AGAATATGTGGT
65 AGAATATGTGGT
* * ** ** * **
1429000 TTCTAAAATTTCCATCAACAACCAAAATAAGTTGATAATGGGTTGAAGAAAAGGAACATGATGGG
1 TTCTAAAATTTCCATTAACAACCAAAACAAACTGATAACAGGCTGAAGAAAAGGAACATGATGAA
*
1429065 GAGTATGTGGT
66 GAATATGTGGT
* * * * *
1429076 TTCTAAAATTTCCATTAATAGCCAAAACAAACTGATAATAGGCT-AAAAAAAGGAAAATGAT-AA
1 TTCTAAAATTTCCATTAACAACCAAAACAAACTGATAACAGGCTGAAGAAAAGGAACATGATGAA
1429139 GGAATATGTGGT
66 -GAATATGTGGT
* * * *
1429151 TTCTACAATTTCCTATTAACAACCAAAACAAACTCATAACAGGCTGAAGGAAAGGAACATGATGG
1 TTCTAAAATTTCC-ATTAACAACCAAAACAAACTGATAACAGGCTGAAGAAAAGGAACATGATGA
* *
1429216 GGAATATCTGGT
65 AGAATATGTGGT
* ** * *** * * *
1429228 TT-TCCAAATTTCTGTTAA-TAGTTAAACAAACTGATAA-TGACCTAAAGAAGAA-GAACAT-AG
1 TTCT-AAAATTTCCATTAACAACCAAAACAAACTGATAACAG-GCTGAAGAA-AAGGAACATGA-
**
1429288 TGGGGAATATGT-GT
62 TGAAGAATATGTGGT
* * * * *
1429302 TTCTACAATTTCCGATCAACAACCAAAACAAACTAATAAC-GAGCTAAACG-AAAGGAAAATGAT
1 TTCTAAAATTTCC-ATTAACAACCAAAACAAACTGATAACAG-GCTGAA-GAAAAGGAACATGAT
*
1429365 -AGGAAATATGTGGT
63 GAAG-AATATGTGGT
* * * * * * *
1429379 TTTTACAATTTCCCATCAACAACTAAAATAAACTGATAATAGGCTGAAGGAAAGGAACATGAT-A
1 TTCTAAAATTT-CCATTAACAACCAAAACAAACTGATAACAGGCTGAAGAAAAGGAACATGATGA
1429443 AGGAATATGTGGT
65 A-GAATATGTGGT
*
1429456 TTCTACAATTTTCCATTAACAACCAAAACAAAC
1 TTCTA-AAATTTCCATTAACAACCAAAACAAAC
1429489 AGACAAGAGT
Statistics
Matches: 384, Mismatches: 82, Indels: 45
0.75 0.16 0.09
Matches are distributed among these distances:
74 12 0.03
75 87 0.23
76 159 0.41
77 118 0.31
78 8 0.02
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (76 bp):
TTCTAAAATTTCCATTAACAACCAAAACAAACTGATAACAGGCTGAAGAAAAGGAACATGATGAA
GAATATGTGGT
Found at i:1429341 original size:151 final size:151
Alignment explanation
Indices: 1428903--1429488 Score: 512
Period size: 151 Copynumber: 3.9 Consensus size: 151
1428893 TGGGAAAAAA
* ** * ** * * *
1428903 AACATGATTGGGAATATAAGG--TTCTAAAATTTTCATTAATAGCTGAAACAGACTGATAACAGG
1 AACATGATGGGGAATATGTGGTTTTCTAAAATTTCCATTAATAGCCAAAACAAACTGATAATAGC
** * * *
1428966 CTGAGGGAAAA-GAACATGATGAA-GAATATGTGGTTTCTAAAATTTCCATCAACAACCAAAATA
66 CT-A-AAAAAAGGAAAATGAT-AAGGAATATGTGGTTTCTACAATTTCCATCAACAACCAAAACA
** * * * *
1429029 AGTTGATAATGGGTTGAAGAAAAGG
128 AACTAATAA-CGGCTGAAGGAAAGG
* *
1429054 AACATGATGGGGAGTATGTGG-TTTCTAAAATTTCCATTAATAGCCAAAACAAACTGATAATAGG
1 AACATGATGGGGAATATGTGGTTTTCTAAAATTTCCATTAATAGCCAAAACAAACTGATAATAGC
*
1429118 CTAAAAAAAGGAAAATGATAAGGAATATGTGGTTTCTACAATTTCCTATTAACAACCAAAACAAA
66 CTAAAAAAAGGAAAATGATAAGGAATATGTGGTTTCTACAATTTCC-ATCAACAACCAAAACAAA
*
1429183 CTCATAACAGGCTGAAGGAAAGG
130 CTAATAAC-GGCTGAAGGAAAGG
* * ** **
1429206 AACATGATGGGGAATATCTGGTTTTC-CAAATTTCTGTTAATAG-TTAAACAAACTGATAAT-GA
1 AACATGATGGGGAATATGTGGTTTTCTAAAATTTCCATTAATAGCCAAAACAAACTGATAATAG-
* **
1429268 CCTAAAGAAGAA-GAACAT-AGTGGGGAATATGT-GTTTCTACAATTTCCGATCAACAACCAAAA
65 CCTAAA-AA-AAGGAAAATGA-TAAGGAATATGTGGTTTCTACAATTTCC-ATCAACAACCAAAA
* *
1429330 CAAACTAATAACGAGCTAAACGAAAGG
126 CAAACTAATAACG-GCTGAAGGAAAGG
* * * * * * * * *
1429357 AAAATGATAGGAAATATGTGGTTTT-TACAATTTCCCATCAACAACTAAAATAAACTGATAATAG
1 AACATGATGGGGAATATGTGGTTTTCTAAAATTT-CCATTAATAGCCAAAACAAACTGATAATAG
* ** * *
1429421 GCTGAAGGAAAGGAACATGATAAGGAATATGTGGTTTCTACAATTTTCCATTAACAACCAAAACA
65 CCT-AAAAAAAGGAAAATGATAAGGAATATGTGGTTTCTACAA-TTTCCATCAACAACCAAAACA
1429486 AAC
128 AAC
1429489 AGACAAGAGT
Statistics
Matches: 359, Mismatches: 56, Indels: 37
0.79 0.12 0.08
Matches are distributed among these distances:
150 8 0.02
151 146 0.41
152 128 0.36
153 40 0.11
154 32 0.09
155 5 0.01
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.25
Consensus pattern (151 bp):
AACATGATGGGGAATATGTGGTTTTCTAAAATTTCCATTAATAGCCAAAACAAACTGATAATAGC
CTAAAAAAAGGAAAATGATAAGGAATATGTGGTTTCTACAATTTCCATCAACAACCAAAACAAAC
TAATAACGGCTGAAGGAAAGG
Found at i:1429358 original size:228 final size:227
Alignment explanation
Indices: 1429045--1429457 Score: 575
Period size: 228 Copynumber: 1.8 Consensus size: 227
1429035 TAATGGGTTG
* * * * *
1429045 AAGAAAAGGAACATGATGGGGAGTATGTGGTTTCTAAAATTTCCATTAATAGCCAAAACAAACTG
1 AAGAAAAGGAACATGATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAACCAAAACAAACTA
* * *
1429110 ATAATAGGCTAAAAAAAGGAAAATGATAAGG-AATATGTGGTTTCTACAATTTCCTATTAACAAC
66 ATAAGAGGCTAAAAAAAGGAAAATGAT-AGGAAATATGTGGTTTCTACAATTTCCCATCAACAAC
**
1429174 CAAAACAAACTCATAACAGGCTGAAGGAAAGGAACATGATGGGGAATATCTGGTTTTCCAAATTT
130 CAAAACAAACTCATAACAGGCTGAAGGAAAGGAACATGATAAGGAATATCTGGTTTTCCAAATTT
1429239 CTGTTAATAGTTAAACAAACTGATAATGACCTA
195 CTGTTAATAGTTAAACAAACTGATAATGACCTA
*
1429272 AAGAAGAA-GAACAT-AGTGGGGAATATGT-GTTTCTACAATTTCCGATCAACAACCAAAACAAA
1 AAGAA-AAGGAACATGA-TGGGGAATATGTGGTTTCTAAAATTTCC-ATCAACAACCAAAACAAA
* *
1429334 CTAATAACGA-GCTAAACGAAAGGAAAATGATAGGAAATATGTGGTTTTTACAATTTCCCATCAA
63 CTAATAA-GAGGCTAAA-AAAAGGAAAATGATAGGAAATATGTGGTTTCTACAATTTCCCATCAA
* * * * *
1429398 CAACTAAAATAAACTGATAATAGGCTGAAGGAAAGGAACATGATAAGGAATATGTGGTTT
126 CAACCAAAACAAACTCATAACAGGCTGAAGGAAAGGAACATGATAAGGAATATCTGGTTT
1429458 CTACAATTTT
Statistics
Matches: 162, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
226 15 0.09
227 52 0.32
228 95 0.59
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (227 bp):
AAGAAAAGGAACATGATGGGGAATATGTGGTTTCTAAAATTTCCATCAACAACCAAAACAAACTA
ATAAGAGGCTAAAAAAAGGAAAATGATAGGAAATATGTGGTTTCTACAATTTCCCATCAACAACC
AAAACAAACTCATAACAGGCTGAAGGAAAGGAACATGATAAGGAATATCTGGTTTTCCAAATTTC
TGTTAATAGTTAAACAAACTGATAATGACCTA
Found at i:1430601 original size:88 final size:88
Alignment explanation
Indices: 1430309--1430607 Score: 314
Period size: 88 Copynumber: 3.4 Consensus size: 88
1430299 GTAAGTGCAT
* * * * * *
1430309 ATGAAACGATGCAAATACCGATGTTATTTAAAGTGCATATATGTGTGAAATGATGAAATTGCAAA
1 ATGAAATGATGCAAATACCAATGTCATCTAAAGTGCATATGTGTGTGAAATGATGCAATTGC-AA
* *
1430374 G-ATTAAT-AAAAGGAAAATGTAC
65 GCATCAATAAAAAGGCAAATGTAC
* * * * * * * * * **
1430396 TTGAAATGATACAAATACTAATGTCATCTAAAATGCAAATGTGTGTAAAACGATACAACTATAAG
1 ATGAAATGATGCAAATACCAATGTCATCTAAAGTGCATATGTGTGTGAAATGATGCAATTGCAAG
*
1430461 CATCAATAAAAAGGCAAATGCAC
66 CATCAATAAAAAGGCAAATGTAC
* * * * *
1430484 ATGAAATGATGCAAATAGCAATATCATCTAAAGTGCATATGTGCGTGAGATAATGCAATTGCAAG
1 ATGAAATGATGCAAATACCAATGTCATCTAAAGTGCATATGTGTGTGAAATGATGCAATTGCAAG
1430549 CATCAATAAAAAGGCAAATGTAC
66 CATCAATAAAAAGGCAAATGTAC
* * *
1430572 ATGAAATGATGCAAATGCCAACGTGATCTAATAGTG
1 ATGAAATGATGCAAATACCAATGTCATCTAA-AGTG
1430608 TCAATGCACG
Statistics
Matches: 167, Mismatches: 42, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
86 3 0.02
87 50 0.30
88 110 0.66
89 4 0.02
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.25
Consensus pattern (88 bp):
ATGAAATGATGCAAATACCAATGTCATCTAAAGTGCATATGTGTGTGAAATGATGCAATTGCAAG
CATCAATAAAAAGGCAAATGTAC
Found at i:1431902 original size:20 final size:21
Alignment explanation
Indices: 1431862--1431907 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
1431852 TTCTACAATT
*
1431862 TGTATTGATATAAATAGTGAA
1 TGTATTGATACAAATAGTGAA
*
1431883 TGTATTGATACATA-AGTGAA
1 TGTATTGATACAAATAGTGAA
1431903 TGTAT
1 TGTAT
1431908 CAATACATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (21 bp):
TGTATTGATACAAATAGTGAA
Found at i:1431913 original size:20 final size:20
Alignment explanation
Indices: 1431877--1431935 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
1431867 TGATATAAAT
**
1431877 AGTGAATGTATTGATACATA
1 AGTGAATGTATCAATACATA
*
1431897 AGTGAATGTATCAATACATG
1 AGTGAATGTATCAATACATA
**
1431917 TTTGAAATGTATCAATACA
1 AGTG-AATGTATCAATACA
1431936 AGACTATGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (20 bp):
AGTGAATGTATCAATACATA
Found at i:1434458 original size:52 final size:52
Alignment explanation
Indices: 1434339--1434460 Score: 181
Period size: 52 Copynumber: 2.3 Consensus size: 52
1434329 CATTTTCGAG
* * *
1434339 GGGATACTCCAACCCCATTTTTACTTCAAAAATATCGAATTTTTCACCATCA
1 GGGATACTCCAACCCTATTTTTACTTCAAAAATATCAAACTTTTCACCATCA
* * * *
1434391 AGAATACTCCAACCCTATTTTTGCTTCAAAAATATCAAACTTTTCACTATCA
1 GGGATACTCCAACCCTATTTTTACTTCAAAAATATCAAACTTTTCACCATCA
1434443 GGGATACTCCAACCCTAT
1 GGGATACTCCAACCCTAT
1434461 CATTTCCAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (52 bp):
GGGATACTCCAACCCTATTTTTACTTCAAAAATATCAAACTTTTCACCATCA
Found at i:1435946 original size:9 final size:9
Alignment explanation
Indices: 1435917--1435950 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
1435907 AAATACTATA
1435917 TTTTTTATT
1 TTTTTTATT
1435926 TTGTTTTCATT
1 TT-TTTT-ATT
1435937 TTTTTTATT
1 TTTTTTATT
1435946 TTTTT
1 TTTTT
1435951 GCTATCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 10 0.43
10 8 0.35
11 5 0.22
ACGTcount: A:0.09, C:0.03, G:0.03, T:0.85
Consensus pattern (9 bp):
TTTTTTATT
Found at i:1435995 original size:14 final size:14
Alignment explanation
Indices: 1435976--1436014 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1435966 TTATTTCATG
1435976 CATTTTTTGTTCTT
1 CATTTTTTGTTCTT
* * *
1435990 CTTTTTTTCTTTTT
1 CATTTTTTGTTCTT
1436004 CATTTTTTGTT
1 CATTTTTTGTT
1436015 TCTTATTTAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.05, C:0.13, G:0.05, T:0.77
Consensus pattern (14 bp):
CATTTTTTGTTCTT
Found at i:1437061 original size:9 final size:9
Alignment explanation
Indices: 1437042--1437130 Score: 60
Period size: 9 Copynumber: 10.2 Consensus size: 9
1437032 TATTCGATAG
1437042 AAAAATC-A
1 AAAAATCAA
1437050 AAAAATCAA
1 AAAAATCAA
*
1437059 AAAAAT--T
1 AAAAATCAA
*
1437066 GAAAATCAA
1 AAAAATCAA
*
1437075 AGAAATCAA
1 AAAAATCAA
* **
1437084 AAAATTTTA
1 AAAAATCAA
1437093 AAAAAT-AA
1 AAAAATCAA
*
1437101 AAAAATTTAA
1 AAAAA-TCAA
**
1437111 AATCATCAA
1 AAAAATCAA
1437120 AAAAATCAA
1 AAAAATCAA
1437129 AA
1 AA
1437131 TCAAAAAATT
Statistics
Matches: 60, Mismatches: 16, Indels: 9
0.71 0.19 0.11
Matches are distributed among these distances:
7 5 0.08
8 13 0.22
9 37 0.62
10 5 0.08
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.19
Consensus pattern (9 bp):
AAAAATCAA
Found at i:1437086 original size:16 final size:16
Alignment explanation
Indices: 1437042--1437086 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
1437032 TATTCGATAG
1437042 AAAAATCAAAAAATCAA
1 AAAAATC-AAAAATCAA
**
1437059 AAAAATTGAAAATCAA
1 AAAAATCAAAAATCAA
*
1437075 AGAAATCAAAAA
1 AAAAATCAAAAA
1437087 ATTTTAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.73, C:0.09, G:0.04, T:0.13
Consensus pattern (16 bp):
AAAAATCAAAAATCAA
Found at i:1437147 original size:17 final size:16
Alignment explanation
Indices: 1437077--1437147 Score: 54
Period size: 18 Copynumber: 4.2 Consensus size: 16
1437067 AAAATCAAAG
1437077 AAATCAAAAAATTTTAAA
1 AAATCAAAAAATTTT--A
*
1437095 AAAT-AAAAAAATTTA
1 AAATCAAAAAATTTTA
** *
1437110 AAATCATCAAAAAAATCA
1 AAATCA--AAAAATTTTA
1437128 AAATCAAAAAATTATTA
1 AAATCAAAAAATT-TTA
1437145 AAA
1 AAA
1437148 ATAATAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
15 5 0.12
16 6 0.14
17 14 0.33
18 18 0.42
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATCAAAAAATTTTA
Found at i:1437148 original size:18 final size:17
Alignment explanation
Indices: 1437077--1437149 Score: 62
Period size: 17 Copynumber: 4.2 Consensus size: 17
1437067 AAAATCAAAG
1437077 AAATCAAAAAATTTTAAA
1 AAATCAAAAAATTTT-AA
*
1437095 AAAT-AAAAAAATTTAA
1 AAATCAAAAAATTTTAA
* *
1437111 AATCATCAAAAAA--ATCA
1 AA--ATCAAAAAATTTTAA
1437128 AAATCAAAAAATTATTAA
1 AAATCAAAAAATT-TTAA
1437146 AAAT
1 AAAT
1437150 AATAAAATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
15 9 0.20
16 4 0.09
17 13 0.30
18 12 0.27
19 6 0.14
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATCAAAAAATTTTAA
Found at i:1438074 original size:11 final size:12
Alignment explanation
Indices: 1438049--1438081 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
1438039 TAACGTAAGG
1438049 AAGAAAAAAAGA
1 AAGAAAAAAAGA
*
1438061 AAGAAAAGAA-A
1 AAGAAAAAAAGA
1438072 AAGAAAAAAA
1 AAGAAAAAAA
1438082 CTTGAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAGA
Found at i:1445190 original size:20 final size:20
Alignment explanation
Indices: 1445165--1445218 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
1445155 TTTTAACTAG
1445165 ATGTATCGATACATTCATGC
1 ATGTATCGATACATTCATGC
1445185 ATGTATCGATACATTCATGC
1 ATGTATCGATACATTCATGC
*
1445205 ATGTATTGATACAT
1 ATGTATCGATACAT
1445219 CTGGGTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTCATGC
Found at i:1446196 original size:28 final size:28
Alignment explanation
Indices: 1446156--1446765 Score: 744
Period size: 28 Copynumber: 21.8 Consensus size: 28
1446146 GCCTCTAACA
1446156 CCACTGACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446184 CCACTGACTTGTGGGCTTTGAAGGGGTA
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
1446212 CCACTGACTTGTGGGCTTT-AAGAGAGTG
1 CCACTGACTTGTGGGCTTTGAA-AGGGTG
* * **
1446240 CCAGTGACTTGTGAGCTTTGAAAATGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
1446268 CCACTAACTTGTGGGCTTT-AGAAGGGTG
1 CCACTGACTTGTGGGCTTTGA-AAGGGTG
* * * * *
1446296 GCACTAATTTATGGGCTTTGGAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446324 CCACTGATTTGTGGGCTTTGAAAGGGTA
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446352 CCACTGACTTGTGGGCTTTGGAATGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446380 CCACTGATTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446408 CCACTAACTTGTGGTCTTTTG-AAGGGTG
1 CCACTGACTTGTGGGC-TTTGAAAGGGTG
* *
1446436 CCACTGATTTGTGGGCTTTGAAAGGGTA
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
1446464 CCACTGACTTGTGGGCTTTGGAA-GGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
1446491 CCACTGATTTGTGGGCTTTGAGAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
1446519 CCACTAACTTGTGGTCTTTTG-AAGAGATG
1 CCACTGACTTGTGGGC-TTTGAAAG-GGTG
*
1446548 CCACTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446576 CCACTCACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446604 CCACTGACTTGTGGGTTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446632 CCACTCACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446660 CCACTAACTTGTGGGCTTTGAAAGAGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446688 CCACTGACTTGTGGGCTTTGAAAAGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
1446716 CCACTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
1446744 CCATTGACCTGTGGGCTTTGAA
1 CCACTGACTTGTGGGCTTTGAA
1446766 GAGATCAATG
Statistics
Matches: 505, Mismatches: 67, Indels: 20
0.85 0.11 0.03
Matches are distributed among these distances:
27 30 0.06
28 444 0.88
29 31 0.06
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (28 bp):
CCACTGACTTGTGGGCTTTGAAAGGGTG
Found at i:1448036 original size:18 final size:17
Alignment explanation
Indices: 1448015--1448057 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
1448005 CTTGACCCCC
*
1448015 TTTTTTTTTTCTTTTTGG
1 TTTTTTTTTT-TTCTTGG
1448033 TTTTTTCTTTTTTCTTGG
1 TTTTTT-TTTTTTCTTGG
1448051 TTTTTTT
1 TTTTTTT
1448058 GTTGTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.00, C:0.07, G:0.09, T:0.84
Consensus pattern (17 bp):
TTTTTTTTTTTTCTTGG
Found at i:1464565 original size:8 final size:8
Alignment explanation
Indices: 1464552--1464597 Score: 67
Period size: 8 Copynumber: 5.8 Consensus size: 8
1464542 AAAACCAAGA
1464552 AAAAAAAC
1 AAAAAAAC
1464560 AAAAAAAC
1 AAAAAAAC
1464568 AGAAAAAAC
1 A-AAAAAAC
*
1464577 -CAAAAAC
1 AAAAAAAC
1464584 AAAAAAAC
1 AAAAAAAC
1464592 AAAAAA
1 AAAAAA
1464598 GGGGTCCAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 6 0.18
8 21 0.62
9 7 0.21
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:1465875 original size:28 final size:28
Alignment explanation
Indices: 1465844--1466709 Score: 939
Period size: 28 Copynumber: 30.5 Consensus size: 28
1465834 AGTTCATCTC
* *
1465844 TTCAAAGCCCATAGGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1465872 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
1465900 TTCAAAGCTCACAAGTTAGTGGCAACCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
1465928 TTCAAAGCGCACAAGTTAATGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1465956 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1465984 TTCAAAGCCCATAAGTCAGTGGCATCTCT
1 TTCAAAGCCCACAAGTCAGTGGCATC-CT
* **
1466013 TTAAAAAACCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
1466041 TTCAAAGCCTATAAGTCAGTAGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
** *
1466069 TTCAAAGCCCACAAGTTGGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1466097 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
1466125 TTCAAAGCCCACAAGTTAGTGGTA-CCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* * *
1466153 TTCATAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
1466181 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1466209 TTCAAAGCCCACAAGTCAGTAGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
1466236 CTTCAAAAGACCGCAAGTCAATGGCATCCT
1 -TTC-AAAGCCCACAAGTCAGTGGCATCCT
* * * *
1466266 TTCAAAGCTCACATGTCATTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
1466294 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1466322 TTCAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1466350 TTCAAAGCCCACAAGTTAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*** *
1466377 CTTCAAAAAATCACAAGTTAGTGGCA-CTCT
1 -TTC-AAAGCCCACAAGTCAGTGGCATC-CT
* *
1466407 TTCAAAGCCTACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
1466435 TTCAAAGCCCACAAGTCAGTGGCATACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAT--CCT
* *
1466465 TTCAAAGCCCACACAAATCAGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCATCCT
* * ***
1466495 TCCAAAGCCTACAAGTCAGTGGTGCCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
1466523 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
1466551 TTCAAAGCCCACAAGTTAGTGGTACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
1466579 TTCAAAGCCTACAAGTTAGTAGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
1466607 TTCAAAGCCCACAAGTTAATGGCATACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAT--CCT
* *
1466637 TTCAAAGCCCACAAGTCGGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
1466665 TTCAAAGCCCACACAAGTCGGTGGCAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-A-TCCT
*
1466697 TTCAACGCCCACA
1 TTCAAAGCCCACA
1466710 CAAGTTAGTG
Statistics
Matches: 715, Mismatches: 102, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
27 5 0.01
28 547 0.77
29 71 0.10
30 65 0.09
31 5 0.01
32 22 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:1466092 original size:141 final size:140
Alignment explanation
Indices: 1465838--1466724 Score: 970
Period size: 141 Copynumber: 6.2 Consensus size: 140
1465828 CTAGAAAGTT
* * * * *
1465838 CATCTCTTCAAAGCCCATAGGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC
1 CATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC
* * * * * * * *
1465903 AAAGCTCACAAGTTAGTGGCAACCTTTCAAAGCGCACAAGTTAATGGCATCTTTTCAAAGCCCAC
66 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAC
1465968 AAGTCAGTGG
131 AAGTCAGTGG
* * * **
1465978 CATCTTTTCAAAGCCCATAAGTCAGTGGCATCTCTTTAAAAAACCACAAGTCAGTGGCATCCTTT
1 CATCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTT
* * * **
1466043 CAAAGCCTATAAGTCAGTAGCACCCTTTCAAAGCCCACAAGTTGGTGGCACCCTTTCAAAGCCCA
65 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCA
1466108 CAAGTCAGTGG
130 CAAGTCAGTGG
* * * * * *
1466119 CATCTTTTCAAAGCCCACAAGTTAGTGGTACCTTTTCATAGCCCACAAGTTAGTGGCATCTTTTC
1 CATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC
* * * *
1466184 AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTAGCA-TCTCTTCAAAAGACC
66 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT-TTC-AAAGCCC
* *
1466248 GCAAGTCAATGG
129 ACAAGTCAGTGG
* * * * * *
1466260 CATCCTTTCAAAGCTCACATGTCATTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTC
1 CATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC
* * * * ***
1466325 AAAGCCCACAAGTCAATGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA-TCTCTTCAAAAAATC
66 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT-TTC-AAAGCCC
*
1466389 ACAAGTTAGTGG
129 ACAAGTCAGTGG
*
1466401 CA-CTCTTTCAAAGCCTACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATACCCT
1 CATCT-TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT--CCT
* * * **
1466465 TTCAAAGCCCACACAAATCAGTGGCACCCTTCCAAAGCCTACAAGTCAGTGGTGCCCTTTCAAAG
63 TTCAAAG-CC-CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
1466530 CCCACAAGTCAGTGG
126 CCCACAAGTCAGTGG
* * * * * * * *
1466545 CACCCTTTCAAAGCCCACAAGTTAGTGGTACCCTTTCAAAGCCTACAAGTTAGTAGCACCCTTTC
1 CATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC
* * *
1466610 AAAGCCCACAAGTTAATGGCATACCCTTTCAAAGCCCACAAGTCGGTGGCACCCTTTCAAAGCCC
66 AAAGCCCACAAGTCAGTGGC--ACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC
*
1466675 ACACAAGTCGGTGG
128 -CACAAGTCAGTGG
* *
1466689 CAACTCTTTTCAACGCCCACACAAGTTAGTGGCACC
1 C-A-TCTTTTCAAAG-CC-CACAAGTCAGTGGCACC
1466725 TATTTTTTTT
Statistics
Matches: 629, Mismatches: 100, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
139 2 0.00
140 112 0.18
141 311 0.49
142 45 0.07
143 12 0.02
144 79 0.13
145 40 0.06
146 10 0.02
147 2 0.00
148 16 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (140 bp):
CATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC
AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAC
AAGTCAGTGG
Found at i:1467658 original size:20 final size:20
Alignment explanation
Indices: 1467633--1467798 Score: 100
Period size: 20 Copynumber: 7.8 Consensus size: 20
1467623 TTTTACCCAG
1467633 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
1467653 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
1467673 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
1467693 ATG-AGTCGATATATTCTGTCTTGTTACCTA
1 ATGTA-TCG--ATA--C-AT-TT-TT--C-A
* *
1467723 GATGTATCGATACATGTGTCA
1 -ATGTATCGATACATTTTTCA
* * * * *
1467744 ATGTATCAATAAATGTATGA
1 ATGTATCGATACATTTTTCA
*
1467764 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
1467784 ATGTATCGATACATT
1 ATGTATCGATACATT
1467799 CTATCTTTTA
Statistics
Matches: 111, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
19 1 0.01
20 84 0.76
21 1 0.01
22 4 0.04
24 2 0.02
25 2 0.02
26 2 0.02
27 3 0.03
29 4 0.04
30 1 0.01
31 6 0.05
32 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1467780 original size:91 final size:89
Alignment explanation
Indices: 1467623--1467844 Score: 313
Period size: 91 Copynumber: 2.4 Consensus size: 89
1467613 AAAGTCACAT
* * *
1467623 TTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATT
1 TTTTACCCAGATGTATCGATACA-TTGTCAATGTATCAATAAATGTATGAATGTATCGATACATT
* *
1467688 CTTCAATG-AGTCGATATATTCTGTC
65 CTTCAATGTA-TCGATACATTCTATC
*
1467713 TTGTTACCTAGATGTATCGATACATGTGTCAATGTATCAATAAATGTATGAATGTATCGATACAT
1 TT-TTACCCAGATGTATCGATACAT-TGTCAATGTATCAATAAATGTATGAATGTATCGATACAT
1467778 TCTTCAATGTATCGATACATTCTATC
64 TCTTCAATGTATCGATACATTCTATC
*
1467804 TTTTACCCAGATATATCGATACATTGAAT-AATGTATCAATA
1 TTTTACCCAGATGTATCGATACATTG--TCAATGTATCAATA
1467845 CATCTAGTTA
Statistics
Matches: 119, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
89 2 0.02
90 35 0.29
91 81 0.68
92 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (89 bp):
TTTTACCCAGATGTATCGATACATTGTCAATGTATCAATAAATGTATGAATGTATCGATACATTC
TTCAATGTATCGATACATTCTATC
Found at i:1470530 original size:21 final size:23
Alignment explanation
Indices: 1470506--1470557 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
1470496 AATAAAAGAC
*
1470506 AATATAAAAATCAA-AAATAAA-
1 AATATAAAAATAAATAAATAAAT
1470527 AATAT-AAAATAAATAAATAAAT
1 AATATAAAAATAAATAAATAAAT
1470549 AA-ATAAAAA
1 AATATAAAAA
1470558 GTCGGGGACG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 7 0.26
21 14 0.52
22 6 0.22
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (23 bp):
AATATAAAAATAAATAAATAAAT
Found at i:1470550 original size:12 final size:13
Alignment explanation
Indices: 1470519--1470555 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
1470509 ATAAAAATCA
1470519 AAAATAAA-AATAT
1 AAAATAAATAA-AT
1470532 AAAATAAATAAAT
1 AAAATAAATAAAT
1470545 -AAATAAATAAA
1 AAAATAAATAAA
1470556 AAGTCGGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 11 0.48
13 10 0.43
14 2 0.09
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:1471373 original size:35 final size:35
Alignment explanation
Indices: 1471327--1471398 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
1471317 GCACGAACGA
* *
1471327 CAGCTTCTAGCCACGAACACCGGCAGCAGCTCCAT
1 CAGCTTATAGCCACGAACACCGGCAGCAACTCCAT
1471362 CAGCTTATAGCCACGAACACCGGCAGCAACTCCAT
1 CAGCTTATAGCCACGAACACCGGCAGCAACTCCAT
1471397 CA
1 CA
1471399 ACTTCCATTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.39, G:0.18, T:0.14
Consensus pattern (35 bp):
CAGCTTATAGCCACGAACACCGGCAGCAACTCCAT
Found at i:1484826 original size:42 final size:42
Alignment explanation
Indices: 1484765--1487088 Score: 3023
Period size: 42 Copynumber: 55.4 Consensus size: 42
1484755 TTTTTGTTTT
* * * *
1484765 CCCTTAGTCTACCTGTCGGCTTCGTCCCTAGAGACTTTTCAA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * * *
1484807 CCCTCAGTCTGCCTATCGGCTTTGACCCTGGAGACTTTTCTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGA-----CTTTCCTA
* * *
1484854 CCCTTAGTCTGCCTGACGGCTTCATCCCTGGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * * *
1484896 CCCTTAGTCTACCTATCGGCTTCCTCCCTGGAGACTTTTCAA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1484938 CCCTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCTTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGAC-TTTC---C-TA
* * *
1484985 CCCTTAGTCTACCTGTCGGCTTCGTCCCTGGAGACTTTTCAA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1485027 CCCTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGA-----CTTTCCTA
* * *
1485074 CCCTTAGTCTTCCTGTCGGCTTCGTCCCTGGAGACTTTTCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485116 CCCTTAGTCTACCTGTCGGCTTCATCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1485158 CCCTTAGTCTGCCTGTCGGCTTCATCCCTAGAGACTTTCCTG
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1485200 CCCTTAGTCTGCCTGTCGGCTTTGACCCCGGAGACTTTTCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1485242 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1485284 CCCTTAGTCTGCCTGTTGGCTTTGTCCCTGGAGACTTTCATA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1485326 CCCTTAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485368 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTTCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1485410 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485452 CCCTTAGTCTGCGTGTCGAC-T--T--C----GACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1485485 CCCTTAGTCTACCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485527 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTAGAGACTTTCCTG
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1485569 CCCTTAGTCTGCCTGTCGGCTTTGACCCCGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485611 CCCTTAGTCTGCCTGTCGGCTTCGTCCTTGGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485653 CCCTTAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTTCATA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1485695 CCCTTAGTCTACTTGTCGGCTTTGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485737 CCCTTAGTCTGCCTGTCAGCTTCGTCCCTGGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485779 CCCTTAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTTCATA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1485821 CCCTTAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1485863 CCCTTAGTCTGCCTATCGGCTTCGTCCCTAGAGACTTTTCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1485905 CCCTTAGTCTGCCTGTCAGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1485947 CCCTTAATCTGCTTGTCGGC-T--T--C----GACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1485980 CCCTTAGTCTACCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1486022 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTAGAGACTTTCCTG
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1486064 CCCTTAGTCTGCCTGTCGGCTTTGACCCCGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1486106 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1486148 CCCTTAGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTTCATA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1486190 CCTTTAGTCTGCTTGTCGGCTTTGTCCCTGGAGACTTTCTTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1486232 CCCTTAGTCTGCCTGTCAGCTTCGTCCTTGGAGACTTTTCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1486274 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1486316 CCCTTAGTCTGCCTGTCGGC-T--T---T---GACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1486349 CCCTTAGTCTACCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1486391 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1486433 CCCTTAGTCTGTCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1486475 CCCTTAGTTTGTCTGCCTGTCGGCTTTGTCCCTGGAGACTTTCCTA
1 CCCTTA----GTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1486521 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * * ** *
1486563 CCCTTAGTCTCCCTATCGGCTTTGACCCCCGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * *
1486605 CCCTTAGTCTGCCTGTTGGCTTTGACCCTGGAGACTTTTCTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGA-----CTTTCCTA
* *
1486652 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTTCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1486694 CCCTTAGTCTACCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1486736 CCCTTAGTCTGCCTATCGGCTTCGTCCCTGGAGACTTTCTTG
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1486778 CCCTTAGTCTGCCTGTCGGCTTTG-ACCTCGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCT-GGAGACTTTCCTA
* *
1486820 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCTTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1486862 CCCTTAGTCTGCCTGTCGACTTTGTCCCTGGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* *
1486904 CCCTTAGTCTGCCTGTCGGCTTTGTCCCTAGAGACTTTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1486946 CCCTTAGTCTGCCTGTTGGCTTCGTCCCTGGAGGCTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * * ** *
1486988 CCCTTAGTCTACCTGTCGGCTTTGACCCCCGAGACTTTCCTT
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
* * *
1487030 CTCTTAGTCTGCCTGTCGGCTTTGACCCTGGAGAC-TTCCTA
1 CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
*
1487071 CCCTTAGTCTGCTTGTCG
1 CCCTTAGTCTGCCTGTCG
1487089 ACTTTGACTT
Statistics
Matches: 2005, Mismatches: 224, Indels: 107
0.86 0.10 0.05
Matches are distributed among these distances:
33 83 0.04
34 3 0.00
36 4 0.00
37 2 0.00
38 2 0.00
39 4 0.00
41 27 0.01
42 1691 0.84
43 7 0.00
46 44 0.02
47 138 0.07
ACGTcount: A:0.10, C:0.34, G:0.20, T:0.36
Consensus pattern (42 bp):
CCCTTAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCCTA
Found at i:1485484 original size:33 final size:33
Alignment explanation
Indices: 1485442--1485508 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
1485432 CGTCCCTGGA
* *
1485442 GACTTTCCTACCCTTAGTCTGCGTGTCGACTTC
1 GACTTTCCTACCCTTAGTCTACCTGTCGACTTC
*
1485475 GACTTTCCTACCCTTAGTCTACCTGTCGGCTTC
1 GACTTTCCTACCCTTAGTCTACCTGTCGACTTC
1485508 G
1 G
1485509 TCCCTGGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.12, C:0.34, G:0.18, T:0.36
Consensus pattern (33 bp):
GACTTTCCTACCCTTAGTCTACCTGTCGACTTC
Found at i:1485979 original size:33 final size:33
Alignment explanation
Indices: 1485937--1486003 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
1485927 CGTCCCTGGA
* *
1485937 GACTTTCCTACCCTTAATCTGCTTGTCGGCTTC
1 GACTTTCCTACCCTTAATCTACCTGTCGGCTTC
*
1485970 GACTTTCCTACCCTTAGTCTACCTGTCGGCTTC
1 GACTTTCCTACCCTTAATCTACCTGTCGGCTTC
1486003 G
1 G
1486004 TCCCTGGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.12, C:0.34, G:0.16, T:0.37
Consensus pattern (33 bp):
GACTTTCCTACCCTTAATCTACCTGTCGGCTTC
Found at i:1486338 original size:27 final size:30
Alignment explanation
Indices: 1486306--1486367 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 30
1486296 CGTCCCTGGA
*
1486306 GACTTTCCTACCCTTAGTCTGCCTGTCGGCTTT
1 GACTTTCCTACCCTTAGTCTACCTGTCGG---T
1486339 GACTTTCCTACCCTTAGTCTACCTGTCGG
1 GACTTTCCTACCCTTAGTCTACCTGTCGG
1486368 CTTCGTCCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.11, C:0.34, G:0.18, T:0.37
Consensus pattern (30 bp):
GACTTTCCTACCCTTAGTCTACCTGTCGGT
Found at i:1487248 original size:15 final size:17
Alignment explanation
Indices: 1487228--1487259 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1487218 AACTATGTGG
1487228 TCCTGC-TT-TTGTTTT
1 TCCTGCATTCTTGTTTT
1487243 TCCTGCATTCTTGTTTT
1 TCCTGCATTCTTGTTTT
1487260 ATTTTTCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.03, C:0.22, G:0.12, T:0.62
Consensus pattern (17 bp):
TCCTGCATTCTTGTTTT
Found at i:1487515 original size:13 final size:13
Alignment explanation
Indices: 1487499--1487539 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
1487489 AAAAGACAAT
1487499 ATAAAAATAAAAA
1 ATAAAAATAAAAA
*
1487512 ATAAAAATATAAA
1 ATAAAAATAAAAA
1487525 ATAAATAAATAAAAA
1 AT-AA-AAATAAAAA
1487540 GTCGGGGACG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 14 0.58
14 2 0.08
15 8 0.33
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:1487520 original size:21 final size:21
Alignment explanation
Indices: 1487496--1487539 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
1487486 AATAAAAGAC
1487496 AATATAAAAATAAA-AAATAAA
1 AATAT-AAAATAAATAAATAAA
1487517 AATATAAAATAAATAAATAAA
1 AATATAAAATAAATAAATAAA
1487538 AA
1 AA
1487540 GTCGGGGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (21 bp):
AATATAAAATAAATAAATAAA
Found at i:1488353 original size:35 final size:35
Alignment explanation
Indices: 1488307--1488378 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
1488297 GCACGAACGA
* * *
1488307 CAGCTTCTAGCCACGAACACCGGCAGCAGCTCCAT
1 CAGCTTATAGCCACGAACACCAGCAGCAACTCCAT
1488342 CAGCTTATAGCCACGAACACCAGCAGCAACTCCAT
1 CAGCTTATAGCCACGAACACCAGCAGCAACTCCAT
1488377 CA
1 CA
1488379 ACTTCCATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.39, G:0.17, T:0.14
Consensus pattern (35 bp):
CAGCTTATAGCCACGAACACCAGCAGCAACTCCAT
Found at i:1492796 original size:78 final size:79
Alignment explanation
Indices: 1492661--1492958 Score: 316
Period size: 79 Copynumber: 3.8 Consensus size: 79
1492651 ACAACGGACC
* * ** *
1492661 TGGAGTATCCCCGATTATGAAAAATTGGT-GTTCCAGAAATAAAATTGGGGTTGGAGTATCCCTT
1 TGGAGTATCCCCGATTATGAAAAATCGGTATTTTGA-AAATAAAATCGGGGTTGGAGTATCCCTT
*
1492725 CGAAAATAACAGGGT
65 CGAAAATAACGGGGT
* * * *
1492740 TGGAGTATCCCTGATTAT-AAAAATCGGTATTTTGAAAATGAAATCGGGGTTTGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGAAAAATCGGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCCTTC
1492804 GAAAATAACGGGGT
66 GAAAATAACGGGGT
* * * *** *
1492818 TGGAGTATCCCCGATTGTGAAAAATCGATGATTTAG-AAATAAGGCCGGGGTTGAAGTATCCCCT
1 TGGAGTATCCCCGATTATGAAAAATCGGT-ATTTTGAAAATAAAATCGGGGTTGGAGTAT-CCCT
* *
1492882 T-GGAACTAACGGGGT
64 TCGAAAATAACGGGGT
* * * * * *
1492897 TGGAGTATCTCCTATTGTGAAAAATTGGTGTTTTGAAAATAAAATCGGAGTTGGAGTATCCC
1 TGGAGTATCCCCGATTATGAAAAATCGGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCC
1492959 CGATTATGGA
Statistics
Matches: 180, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
78 70 0.39
79 101 0.56
80 9 0.05
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (79 bp):
TGGAGTATCCCCGATTATGAAAAATCGGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCCTTC
GAAAATAACGGGGT
Found at i:1492972 original size:51 final size:51
Alignment explanation
Indices: 1492895--1493010 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
1492885 AACTAACGGG
* * * * *
1492895 GTTGGAGTATCTCCTATTGTGAAAAATTGGTGTTTT-GAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAG-AAATAAAACCGGA
* *
1492946 GTTGGAGTATCCCCGATTATGGAAAATTGGTATTTTAGAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAACCGGA
1492997 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
1493011 TCGGAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 56 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAACCGGA
Found at i:1495424 original size:20 final size:19
Alignment explanation
Indices: 1495379--1495485 Score: 84
Period size: 20 Copynumber: 5.7 Consensus size: 19
1495369 AAAATGCTTG
*
1495379 AATGTATCGATACATTGTA-
1 AATGTATCGATACAATG-AC
1495398 AATTGTATCGATACAATGAGC
1 AA-TGTATCGATACAATGA-C
1495419 AATGTATCG-----AT-AC
1 AATGTATCGATACAATGAC
*
1495432 AATGTATCGATACAAGGAGC
1 AATGTATCGATACAATGA-C
* *
1495452 AATGTATCGATATAATGCAA
1 AATGTATCGATACAATG-AC
1495472 AATGTATCGATACA
1 AATGTATCGATACA
1495486 TCTGGGTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 21
0.72 0.06 0.21
Matches are distributed among these distances:
13 10 0.14
14 1 0.01
15 2 0.03
18 1 0.01
19 4 0.06
20 50 0.70
21 3 0.04
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (19 bp):
AATGTATCGATACAATGAC
Found at i:1495436 original size:13 final size:13
Alignment explanation
Indices: 1495418--1495446 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1495408 ATACAATGAG
1495418 CAATGTATCGATA
1 CAATGTATCGATA
1495431 CAATGTATCGATA
1 CAATGTATCGATA
1495444 CAA
1 CAA
1495447 GGAGCAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1495443 original size:33 final size:33
Alignment explanation
Indices: 1495401--1495468 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
1495391 CATTGTAAAT
*
1495401 TGTATCGATACAATGAGCAATGTATCGATACAA
1 TGTATCGATACAAGGAGCAATGTATCGATACAA
*
1495434 TGTATCGATACAAGGAGCAATGTATCGATATAA
1 TGTATCGATACAAGGAGCAATGTATCGATACAA
1495467 TG
1 TG
1495469 CAAAATGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (33 bp):
TGTATCGATACAAGGAGCAATGTATCGATACAA
Found at i:1497036 original size:14 final size:14
Alignment explanation
Indices: 1497017--1497050 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
1497007 GGAGTTATGC
1497017 GAATATGAATTTTT
1 GAATATGAATTTTT
1497031 GAATATGAATTTTT
1 GAATATGAATTTTT
1497045 GAATAT
1 GAATAT
1497051 TCATTATCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (14 bp):
GAATATGAATTTTT
Found at i:1497783 original size:20 final size:20
Alignment explanation
Indices: 1497758--1497823 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
1497748 TTTCAACGAT
1497758 TTGTATCGATACATAAAGTG
1 TTGTATCGATACATAAAGTG
1497778 TTGTATCGATAC---AA---
1 TTGTATCGATACATAAAGTG
1497792 -TGTATCGATACATAAAGTG
1 TTGTATCGATACATAAAGTG
1497811 TTGTATCGATACA
1 TTGTATCGATACA
1497824 ATGTATCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
16 2 0.05
17 2 0.05
20 24 0.62
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATAAAGTG
Found at i:1497797 original size:13 final size:13
Alignment explanation
Indices: 1497779--1497836 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 13
1497769 CATAAAGTGT
1497779 TGTATCGATACAA
1 TGTATCGATACAA
1497792 TGTATCGATACATAAA
1 TGTATCGATAC---AA
1497808 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1497825 TGTATCGATACA
1 TGTATCGATACA
1497837 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 23 0.61
16 2 0.05
17 2 0.05
20 11 0.29
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1497801 original size:33 final size:33
Alignment explanation
Indices: 1497759--1497857 Score: 182
Period size: 33 Copynumber: 3.0 Consensus size: 33
1497749 TTCAACGATT
1497759 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1497792 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
1497825 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1497857 T
1 T
1497858 TTAAGCTACT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 19 0.29
33 46 0.71
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1497932 original size:52 final size:50
Alignment explanation
Indices: 1497876--1498025 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 50
1497866 CTGCCAAAAA
*
1497876 ATGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
1497928 ATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
1497980 ATGTATCGATACACTATTAAATGTATCAATACATGCAGGCAAATTT
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
1498026 TCATATTTCG
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
51 2 0.02
52 88 0.98
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:1507337 original size:25 final size:26
Alignment explanation
Indices: 1507293--1507346 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
1507283 GTTCTTTTCC
*
1507293 AAAAAAGAAACAAAACAAAAAGGGAA
1 AAAAAACAAACAAAACAAAAAGGGAA
1507319 AAAAAACAAACAAAA-AAAAAGGGAA
1 AAAAAACAAACAAAACAAAAAGGGAA
1507344 AAA
1 AAA
1507347 CCCCTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (26 bp):
AAAAAACAAACAAAACAAAAAGGGAA
Found at i:1508389 original size:33 final size:33
Alignment explanation
Indices: 1508296--1508876 Score: 464
Period size: 33 Copynumber: 17.6 Consensus size: 33
1508286 TACCTTCTTA
* * **
1508296 AAGTCCACGACTCCGTGGCACCTTCTT--TTCA
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* *
1508327 AAGCCCACAACTCTGTGGCACTCTTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCAC-C-TTGTTCCTTTT
* * *
1508362 AAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* * **
1508395 AAGTCCACGACTCCGTGGCACCTTCTT--TTCA
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
*
1508426 AAGCCCACAACTCCGTGGCACTCTTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCAC-C-TTGTTCCTTTT
** * *
1508461 AAGTCCATGACCCCGTGGCATCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* *
1508494 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* *
1508527 ACAGCCCACAACTTCGTGGCACCTT-TTCCTTTT
1 A-AGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* *
1508560 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCCTTTT
1 --AAGTCCACAACTCCGTGGCAC-CTTGTT--CCTTTT
* * *
1508598 AAATCCACGACCCCGTGGCACCTTGTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
1508630 CAAAGTCCACAACTCCGTGGCACC---TTCCTTTT
1 --AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* *
1508662 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
*
1508695 AAAGCCCACAACTCC-TGGCACCTT-TTCCTTTT
1 -AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* *
1508727 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTT
1 --AAGTCCACAACTCCGTGGCAC-CTTGTT-CC-TTTT
** * * *
1508765 AAGTCCATGACCCCATGGCACCTTGTT-TTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
* * **
1508797 CAAAGTCCACAACTCCGTGGCAGCTTCTT--TTCA
1 --AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
*
1508830 AAGTCCACAATTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
1508857 AAGTCCACAACTCCGTGGCA
1 AAGTCCACAACTCCGTGGCA
1508877 TCTTTCTTCT
Statistics
Matches: 452, Mismatches: 66, Indels: 68
0.77 0.11 0.12
Matches are distributed among these distances:
27 21 0.05
30 23 0.05
31 60 0.13
32 23 0.05
33 122 0.27
34 101 0.22
35 53 0.12
36 37 0.08
37 2 0.00
38 10 0.02
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
Found at i:1508467 original size:99 final size:99
Alignment explanation
Indices: 1508296--1508856 Score: 622
Period size: 99 Copynumber: 5.6 Consensus size: 99
1508286 TACCTTCTTA
* *
1508296 AAGTCCACGACTCCGTGGCACC-TTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTGTTCCTT
1 AAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT-TTCCTT
1508360 TTAAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
65 TTAAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
*
1508395 AAGTCCACGACTCCGTGGCACC-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTGTTCCTT
1 AAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT-TTCCTT
*
1508459 TTAAGTCCATGACCCCGTGGCATCTTGTTCCTTTT
65 TTAAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
* * *
1508494 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTACAGCCCACAACTTCGTGGCAC-C-TTTTCCT
1 AAGTCCACAACTCCGTGGCACC--TTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * *
1508557 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCCTTTT
64 TTT--AAGTCCACGACCCCGTGGCA-TCTTGTT--CCTTTT
* * * *
1508598 AAATCCACGACCCCGTGGCACCTTGTTCTTTTCAAAGTCCACAACTCCGTGGCAC-C---TTCCT
1 AAGTCCACAACTCCGTGGCACC-T-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * * *
1508659 TTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
64 TTTAAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
*
1508695 AAAGCCCACAACTCC-TGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 -AAGTCCACAACTCCGTGGCACC-TTT-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT-C
* * * *
1508759 CTTTTTAAGTCCATGACCCCATGGCACCTTGTT-TTTTT
62 C-TTTTAAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
* * * *
1508797 CAAAGTCCACAACTCCGTGGCAGC-TTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTT
1 --AAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
1508857 AAGTCCACAA
Statistics
Matches: 407, Mismatches: 36, Indels: 36
0.85 0.08 0.08
Matches are distributed among these distances:
96 2 0.00
97 41 0.10
98 11 0.03
99 132 0.32
100 21 0.05
101 50 0.12
102 50 0.12
103 42 0.10
104 58 0.14
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (99 bp):
AAGTCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
TAAGTCCACGACCCCGTGGCATCTTGTTCCTTTT
Found at i:1508786 original size:167 final size:167
Alignment explanation
Indices: 1508295--1508856 Score: 637
Period size: 167 Copynumber: 3.3 Consensus size: 167
1508285 ATACCTTCTT
* * * *
1508295 AAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTGTTCCTT
1 AAAGTCCACAACTCCGTGGCACCTTCTTTT-AAAGTCCACAACTCCGTGGCAC-CTTT-TTCTTT
* * * * * *
1508360 TT-AAGTCCACGACCCCGTGGCATCTTGTTCCTTTT--AAGTCCACGACTCCGTGGCAC-C---T
63 TTAAAGCCCACAACTCC-TGGCACCTT-TTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
* * * *
1508418 T--CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTGTTCCTTTT-
126 TCCCTTTT-TAAGTCCACGACCCCGTGGCAC-C-TTGTT-CTTTTC
** * *
1508461 -AAGTCCATGACCCCGTGGCATCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGTCCACAACTCCGTGGCA-C--CTT-CTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCTT
* *
1508524 TTTACAGCCCACAACTTCGTGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
62 TTTAAAGCCCACAAC-TCCTGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
* *
1508589 TCCCCTTTTAAATCCACGACCCCGTGGCACCTTGTTCTTTTC
126 TCCCTTTTTAAGTCCACGACCCCGTGGCACCTTGTTCTTTTC
1508631 AAAGTCCACAACTCCGTGGCACCTTCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCACCTT-CTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1508695 AAAGCCCACAACTCCTGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
65 AAAGCCCACAACTCCTGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
* * *
1508760 TTTTTAAGTCCATGACCCCATGGCACCTTGTTTTTTTC
130 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCTTTTC
* * *
1508798 AAAGTCCACAACTCCGTGGCAGCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTCTTTT-AAAGTCCACAACTCCGTGGCACCTTTTT
1508857 AAGTCCACAA
Statistics
Matches: 344, Mismatches: 34, Indels: 34
0.83 0.08 0.08
Matches are distributed among these distances:
165 33 0.10
166 26 0.08
167 148 0.43
168 80 0.23
169 10 0.03
170 6 0.02
171 20 0.06
172 17 0.05
173 4 0.01
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (167 bp):
AAAGTCCACAACTCCGTGGCACCTTCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTA
AAGCCCACAACTCCTGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
TTTTAAGTCCACGACCCCGTGGCACCTTGTTCTTTTC
Found at i:1508788 original size:70 final size:67
Alignment explanation
Indices: 1508296--1508889 Score: 449
Period size: 70 Copynumber: 9.0 Consensus size: 67
1508286 TACCTTCTTA
* * *
1508296 AAGTCCACGACTCCGTGGCACC--TT-CTTTTCAAAGCCCACAACTCTGTGGCACTCTTTGTTCC
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT-AAAGTCCACAACTCCGTGGCAC-CTTT-TTCC
1508358 -TTTT
63 TTTTT
* * * *
1508362 AAGTCCACGACCCCGTGGCATCTTGTTCCTTTT-AAGTCCACGACTCCGTGGCACC---TT-CTT
1 AAGTCCACAACTCCGTGGCACCTT-TTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCTT
*
1508422 TTCA
65 TT-T
* ** * * *
1508426 AAGCCCACAACTCCGTGGCACTCTTTGTTCCTTTT-AAGTCCATGACCCCGTGGCATCTTGTTCC
1 AAGTCCACAACTCCGTGGCAC-C-TT-TTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
1508490 -TTTT
63 TTTTT
* * * *
1508494 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTACAGCCCACAACTTCGTGGCACC-TTTTCCTT
1 AAGTCCACAACTCCGTGGCACC-TTTTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCTT
*
1508558 TTCA
65 TT-T
* * * *
1508562 AAGCCCACAACTCCGTGGCACTCTTTTTCCCCTTTTAAA-TCCACGACCCCGTGGCACCTTGTT-
1 AAGTCCACAACTCCGTGGCAC-C-TTTT--CCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTC
*
1508625 CTTTTCA
62 CTTTT-T
1508632 AAGTCCACAACTCCGTGGCACC--TTCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTT-CTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
1508693 TT
66 TT
* *
1508695 AAAGCCCACAACTCC-TGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 -AAGTCCACAACTCCGTGGCACCTTTTCCTTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTT-C
1508759 CTTTTT
62 CTTTTT
** * * * *
1508765 AAGTCCATGACCCCATGGCACCTTGTT-TTTTTCAAAGTCCACAACTCCGTGGCAGC---TT-CT
1 AAGTCCACAACTCCGTGGCACCTT-TTCCTTTT-AAAGTCCACAACTCCGTGGCACCTTTTTCCT
*
1508825 TTTCA
64 TTT-T
* *
1508830 AAGTCCACAATTCCGTGGCA-C----CCTTTT-AAGTCCACAACTCCGTGGCATCTTTCTT-CTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGTCCACAACTCCGTGGCACCTTT-TTCCTT
1508888 TT
65 TT
1508890 CAAAAGCCCA
Statistics
Matches: 437, Mismatches: 55, Indels: 76
0.77 0.10 0.13
Matches are distributed among these distances:
58 21 0.05
60 4 0.01
62 8 0.02
63 14 0.03
64 68 0.16
65 24 0.05
66 66 0.15
67 43 0.10
68 64 0.15
69 25 0.06
70 88 0.20
71 12 0.03
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.34
Consensus pattern (67 bp):
AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
TT
Found at i:1508863 original size:27 final size:30
Alignment explanation
Indices: 1508793--1508876 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 30
1508783 CACCTTGTTT
*
1508793 TTTTCAAAGTCCACAACTCCGTGGCAGCTTC
1 TTTT-AAAGTCCACAACTCCGTGGCAGCTCC
*
1508824 TTTTCAAAGTCCACAATTCCGTGGCA-C-CC
1 TTTT-AAAGTCCACAACTCCGTGGCAGCTCC
1508853 TTTT-AAGTCCACAACTCCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
1508877 TCTTTCTTCT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
27 19 0.38
29 5 0.10
30 1 0.02
31 25 0.50
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (30 bp):
TTTTAAAGTCCACAACTCCGTGGCAGCTCC
Found at i:1508934 original size:33 final size:33
Alignment explanation
Indices: 1508892--1509185 Score: 452
Period size: 33 Copynumber: 8.9 Consensus size: 33
1508882 CTTCTTTTCA
*
1508892 AAAGCCCACATAAGTCGGTGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
1508925 AAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-TCT
*
1508958 AAAGCCCACACAAGTCGGTGGCAACCTTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
1508991 AAAGCCTACACAAGTCAGTGGCAA-CCTTCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-TCT
**
1509024 AAAGCCCACACAAGTTAGTGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
1509057 AAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-TCT
1509090 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
*
1509123 AAAGCCCACACAAGTCGGTGGCAAGCCTTCTC-
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
1509155 AAAGCCCACACAAGTCGATGGCAACTCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
1509186 AAGCCCAATA
Statistics
Matches: 242, Mismatches: 13, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
32 42 0.17
33 186 0.77
34 14 0.06
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
Found at i:1509251 original size:49 final size:49
Alignment explanation
Indices: 1509180--1509652 Score: 543
Period size: 49 Copynumber: 9.8 Consensus size: 49
1509170 CGATGGCAAC
* * *
1509180 TCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
1 TCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
*
1509230 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
*
1509274 T-TTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCA
1 TCTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCACATTGGCACCTTCA
*
1509322 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * *
1509366 -CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCA
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * *
1509414 TCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGACATCCTTTTTCTCA
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-CC----T-TCA
* *
1509469 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
*
1509518 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* *
1509562 -CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCA
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CA
* *
1509613 TCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
1509653 ACATCTTTTT
Statistics
Matches: 364, Mismatches: 30, Indels: 56
0.81 0.07 0.12
Matches are distributed among these distances:
43 115 0.32
44 2 0.01
45 3 0.01
47 2 0.01
48 2 0.01
49 151 0.41
50 8 0.02
52 36 0.10
54 3 0.01
55 42 0.12
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (49 bp):
TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
Found at i:1509347 original size:92 final size:92
Alignment explanation
Indices: 1509185--1509661 Score: 670
Period size: 92 Copynumber: 5.0 Consensus size: 92
1509175 GCAACTCTTC
* *
1509185 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1509250 GGCCTTGAATCAGCACATTGGCACTTT
66 GGCCTTGAATCAGCACATTGGCACTTT
1509277 TAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
1509342 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACTTT
* *
1509369 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
1509434 GGCCTTGAATTAGCACATTGACATCCTTTTTCTCATCTT
66 GGCCTTGAATCAGCACATTGGCA----------C-T-TT
*
1509473 TAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGC
1 TAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGC
*
1509537 TGGCCTTGAATCAGCACATTGGCACCTT
65 TGGCCTTGAATCAGCACATTGGCACTTT
* *
1509565 TAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGT
1 TAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTTTAAGTCCAATGT
*
1509629 AGCTGGCCTTGAATCAGCACATTGACATCTTT
62 AGCTGGCCTTGAATCAGCACATTGGCA-CTTT
1509661 T
1 T
1509662 TTCTCATCTT
Statistics
Matches: 349, Mismatches: 19, Indels: 30
0.88 0.05 0.08
Matches are distributed among these distances:
92 215 0.62
94 3 0.01
95 42 0.12
96 4 0.01
102 1 0.00
104 84 0.24
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (92 bp):
TAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACTTT
Found at i:1509368 original size:21 final size:20
Alignment explanation
Indices: 1509344--1509411 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
1509334 ATGTAGCTGG
1509344 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCA-ATTGGCA
* *
1509365 CCTTTAAGTC--CAATATCGCTA
1 CCTTGAA-TCAGCAAT-TGGC-A
1509386 GCCTTGAATCAGCATATTGGCA
1 -CCTTGAATCAGCA-ATTGGCA
1509408 CCTT
1 CCTT
1509412 CATCTTTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (20 bp):
CCTTGAATCAGCAATTGGCA
Found at i:1509546 original size:104 final size:103
Alignment explanation
Indices: 1509366--1509710 Score: 453
Period size: 104 Copynumber: 3.4 Consensus size: 103
1509356 ACATTGGCAC
* *
1509366 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
1509431 GCTGGCCTTGAATTAGCACATTGACATCCTTTTTCTCAT
66 GCTGGCCTTGAATCAGCACATTGACAT-CTTTTTCTCAT
*
1509470 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
1509535 GCTGGCCTTGAATCAGCACATTGGCA---------C--
66 GCTGGCCTTGAATCAGCACATTGACATCTTTTTCTCAT
* *
1509562 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTTTAAGTCCAAT
1509627 GTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTTCTCAT
63 GTAGCTGGCCTTGAATCAGCACATTGACATC-TTTTTCTCAT
* * * *
1509669 CTTTAAGCCCAATATCGTTGG-CTGTGAATCAACATATTGGCA
1 CTTTAAGTCCAATATAGCTGGCCT-TGAATCAGCATATTGGCA
1509711 TCTTTATCAC
Statistics
Matches: 212, Mismatches: 13, Indels: 29
0.83 0.05 0.11
Matches are distributed among these distances:
92 43 0.20
94 3 0.01
95 42 0.20
104 86 0.41
105 1 0.00
106 2 0.01
107 35 0.17
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (103 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGACATCTTTTTCTCAT
Found at i:1509632 original size:52 final size:55
Alignment explanation
Indices: 1509562--1509899 Score: 214
Period size: 52 Copynumber: 6.1 Consensus size: 55
1509552 ACATTGGCAC
1509562 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-ATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
* * * * *
1509614 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
* * * *
1509669 CTTTAAGCCCAATATCGTTGG-CTGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
1 CTTTAAGTCCAATATAGCTGGCCT-TGAATCAGCATATTGGCATC----T-A---TT-T--TC-T
1509733 CAT
53 CAT
* *
1509736 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-C---CTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTC-TCAT
** * * * * *
1509788 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTAGCA--T-TTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
* * * * * * * *
1509841 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCT-TTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT-CTATTTTCTCAT
1509896 CTTT
1 CTTT
1509900 GAACCTAATA
Statistics
Matches: 225, Mismatches: 38, Indels: 43
0.74 0.12 0.14
Matches are distributed among these distances:
52 77 0.34
53 40 0.18
54 11 0.05
55 49 0.22
59 1 0.00
63 2 0.01
64 1 0.00
66 3 0.01
67 39 0.17
68 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
Found at i:1509773 original size:67 final size:68
Alignment explanation
Indices: 1509665--1509791 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
1509655 ATCTTTTTTC
* * *
1509665 TCATCTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCTGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
1509729 TCT
66 TCT
* * *
1509732 TCATCTTTAAGTCCAATATTGCTGGCCT-TGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGG-CTGTGAATCAACATATTGGCACCTTCATCATCTTT
1509792 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
67 46 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCTGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:1510611 original size:13 final size:13
Alignment explanation
Indices: 1510593--1510617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1510583 CATAAAGTGT
1510593 TGTATCGATACAA
1 TGTATCGATACAA
1510606 TGTATCGATACA
1 TGTATCGATACA
1510618 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1510628 original size:32 final size:33
Alignment explanation
Indices: 1510573--1510636 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
1510563 TTCAACGATT
1510573 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1510606 TGTATCGATACAT-AAGTGTTGTATCGATACA
1 TGTATCGATACATAAAGTGTTGTATCGATACA
1510637 TAAGTTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1510630 original size:19 final size:18
Alignment explanation
Indices: 1510571--1510719 Score: 139
Period size: 19 Copynumber: 8.8 Consensus size: 18
1510561 ATTTCAACGA
1510571 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
1510590 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1510606 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1510622 TGTTGTATCGATACATAAG
1 T-TTGTATCGATACATAAG
1510641 TTTTGTATCGATAC--AA-
1 -TTTGTATCGATACATAAG
1510657 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1510673 TTTTGTATCGATAC--AA-
1 -TTTGTATCGATACATAAG
1510689 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1510705 TTTTGTATCGATACA
1 -TTTGTATCGATACA
1510720 ATTTAAGCTA
Statistics
Matches: 110, Mismatches: 0, Indels: 40
0.73 0.00 0.27
Matches are distributed among these distances:
13 33 0.30
15 6 0.05
17 6 0.05
19 52 0.47
20 13 0.12
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:1510658 original size:51 final size:52
Alignment explanation
Indices: 1510572--1510687 Score: 207
Period size: 51 Copynumber: 2.2 Consensus size: 52
1510562 TTTCAACGAT
1510572 TTGTATCGATACATAAAGTGTTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACATAAAGTGTTGTATCGATACAATGTATCGATACATAAGTG
* *
1510624 TTGTATCGATACAT-AAGTTTTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACATAAAGTGTTGTATCGATACAATGTATCGATACATAAGTG
1510675 TTGTATCGATACA
1 TTGTATCGATACA
1510688 ATGTATCGAT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
51 48 0.77
52 14 0.23
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (52 bp):
TTGTATCGATACATAAAGTGTTGTATCGATACAATGTATCGATACATAAGTG
Found at i:1510661 original size:32 final size:32
Alignment explanation
Indices: 1510625--1510721 Score: 194
Period size: 32 Copynumber: 3.0 Consensus size: 32
1510615 ACATAAGTGT
1510625 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
1510657 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
1510689 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
1510721 T
1 T
1510722 TTAAGCTACT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTTTTGTATCGATACAA
Found at i:1510662 original size:13 final size:13
Alignment explanation
Indices: 1510644--1510700 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1510634 ACATAAGTTT
1510644 TGTATCGATACAA
1 TGTATCGATACAA
1510657 TGTATCGATACATAA
1 TGTATCGATAC--AA
1510672 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
1510689 TGTATCGATACA
1 TGTATCGATACA
1510701 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1510796 original size:52 final size:50
Alignment explanation
Indices: 1510740--1510889 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 50
1510730 CTGCCAAAAA
*
1510740 ATGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
1510792 ATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
1510844 ATGTATCGATACACTATTAAATGTATCGATACATGTAGGCAAATTT
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
1510890 TCATATTTCG
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
51 2 0.02
52 88 0.98
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:1514044 original size:13 final size:13
Alignment explanation
Indices: 1514028--1514059 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1514018 TTAAAATTAA
1514028 ATATATAAATAAT
1 ATATATAAATAAT
*
1514041 ATATATAAATATT
1 ATATATAAATAAT
1514054 ATATAT
1 ATATAT
1514060 TATATAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATAAATAAT
Found at i:1514073 original size:20 final size:19
Alignment explanation
Indices: 1514042--1514087 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
1514032 ATAAATAATA
1514042 TATATAA-ATATTAT-ATAT
1 TATATAACATATT-TGATAT
1514060 TATATAACATTATTTGATAT
1 TATATAACA-TATTTGATAT
*
1514080 AATATAAC
1 TATATAAC
1514088 TATAGTACGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 7 0.29
19 2 0.08
20 15 0.62
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (19 bp):
TATATAACATATTTGATAT
Found at i:1515712 original size:79 final size:79
Alignment explanation
Indices: 1515614--1515815 Score: 253
Period size: 79 Copynumber: 2.6 Consensus size: 79
1515604 AATAACGAGG
* * * * * *
1515614 TTGGAGTATTCCCTTGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCGATGA-TTAG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAAT-ATTTAG
*
1515678 GAAATAAAATCGGGA
65 GAAATAAAACCGGGA
* *
1515693 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTAGG
* *
1515758 AAATAAAGCCGGGG
66 AAATAAAACCGGGA
* * **
1515772 TTAGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAAT
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAAT
1515816 GAAATAATGA
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 1 0.01
79 106 0.99
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTAGG
AAATAAAACCGGGA
Found at i:1516050 original size:52 final size:51
Alignment explanation
Indices: 1515956--1516077 Score: 138
Period size: 52 Copynumber: 2.4 Consensus size: 51
1515946 AGAATATGGG
* * *
1515956 GTTGGAGTATCCCCGGTTATGAAAAATTGATGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTAGAAATAAAACCGGA
* * * *
1516007 GTTGGAGTATCCCCTATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATT-AAGAAAAATTGATGTTTTAG-AAATAAAACCGGA
* *
1516059 GTTGGAATATCCTCGATTA
1 GTTGGAGTATCCCCGATTA
1516078 CGGAGAATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
51 18 0.31
52 41 0.69
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTAGAAATAAAACCGGA
Found at i:1516060 original size:130 final size:130
Alignment explanation
Indices: 1515795--1516070 Score: 317
Period size: 129 Copynumber: 2.1 Consensus size: 130
1515785 TCGGAGGTAA
* * *
1515795 CGGGGTTGGAGTATCCCCAATGAAATAATGAGGTTGGAGTATCCTCGATTGTAAAAAACTAGTGT
1 CGGGGTTCGAGTATCCCCAATGAAATAATGAGGTTGGAGTATCCCCGATTATAAAAAACTAGTGT
* ** *
1515860 TTTGGAAATAAAATCAGAGTTGAAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAAC
66 TTTAGAAATAAAATCAGAGTTGAAATATCCCCGATTAAGGAAAATTGGTGTTTTAGAAATAAAAC
* * * * * *
1515925 CGGGGTTCTAGTATCCCCTA-GAGAAT-ATGGGGTTGGAGTATCCCCGGTTATGAAAAA-TTGAT
1 CGGGGTTCGAGTATCCCCAATGA-AATAATGAGGTTGGAGTATCCCCGATTATAAAAAACTAG-T
* * * *
1515987 GTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCTATTAAAGGAAAATTGGTGTTTT-GAAAATA
64 GTTTTAGAAATAAAATCAGAGTTGAAATATCCCCGATT-AAGGAAAATTGGTGTTTTAG-AAATA
1516051 AAAC
127 AAAC
* *
1516055 CGGGGTTGGAATATCC
1 CGGGGTTCGAGTATCC
1516071 TCGATTACGG
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
128 2 0.02
129 63 0.52
130 57 0.47
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (130 bp):
CGGGGTTCGAGTATCCCCAATGAAATAATGAGGTTGGAGTATCCCCGATTATAAAAAACTAGTGT
TTTAGAAATAAAATCAGAGTTGAAATATCCCCGATTAAGGAAAATTGGTGTTTTAGAAATAAAAC
Found at i:1518480 original size:21 final size:21
Alignment explanation
Indices: 1518454--1518495 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1518444 GTATCGATAC
*
1518454 AATGTATTGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
*
1518475 AATGTATCGATATATTTCCTT
1 AATGTATCGATACATTTCCTT
1518496 GGTAGTAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.48
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:1518530 original size:13 final size:13
Alignment explanation
Indices: 1518512--1518561 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 13
1518502 AGCTTCGTGG
1518512 CGATACATTGTAT
1 CGATACATTGTAT
1518525 CGATACAACTTATGTAT
1 CGATAC-A--T-TGTAT
1518542 CGATACATTGTAT
1 CGATACATTGTAT
1518555 CGATACA
1 CGATACA
1518562 AAACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 18 0.55
14 2 0.06
16 2 0.06
17 11 0.33
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1518542 original size:17 final size:17
Alignment explanation
Indices: 1518520--1518580 Score: 76
Period size: 17 Copynumber: 3.7 Consensus size: 17
1518510 GGCGATACAT
1518520 TGTATCGATACAACTTA
1 TGTATCGATACAACTTA
1518537 TGTATCGATAC-A--T-
1 TGTATCGATACAACTTA
1518550 TGTATCGATACAAAACTTA
1 TGTATCGATAC--AACTTA
1518569 TGTATCGATACA
1 TGTATCGATACA
1518581 TTTACTGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
17 12 0.32
18 1 0.03
19 11 0.29
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (17 bp):
TGTATCGATACAACTTA
Found at i:1518548 original size:30 final size:31
Alignment explanation
Indices: 1518512--1518582 Score: 126
Period size: 32 Copynumber: 2.3 Consensus size: 31
1518502 AGCTTCGTGG
1518512 CGATACATTGTATCGATAC-AACTTATGTAT
1 CGATACATTGTATCGATACAAACTTATGTAT
1518542 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATAC-AAACTTATGTAT
1518574 CGATACATT
1 CGATACATT
1518583 TACTGAATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 19 0.49
32 20 0.51
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (31 bp):
CGATACATTGTATCGATACAAACTTATGTAT
Found at i:1518724 original size:14 final size:13
Alignment explanation
Indices: 1518697--1518745 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 13
1518687 ATTATTATTA
**
1518697 TTTTTTAATTTTT
1 TTTTTTAAAATTT
1518710 TTTCTTTAAAATTT
1 TTT-TTTAAAATTT
1518724 TTTTTTAAAAAATTT
1 TTTTTT--AAAATTT
1518739 TTTTTTA
1 TTTTTTA
1518746 TCCTTTTTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 7 0.23
14 11 0.35
15 13 0.42
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTTAAAATTT
Found at i:1518726 original size:15 final size:15
Alignment explanation
Indices: 1518703--1518745 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
1518693 ATTATTTTTT
**
1518703 AATTTTTTTTCTTTAA
1 AATTTTTTTT-TAAAA
1518719 AATTTTTTTTTAAAA
1 AATTTTTTTTTAAAA
1518734 AATTTTTTTTTA
1 AATTTTTTTTTA
1518746 TCCTTTTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
AATTTTTTTTTAAAA
Found at i:1519032 original size:31 final size:31
Alignment explanation
Indices: 1518979--1519039 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
1518969 AAAATTTACT
*
1518979 ATATATTTTACATTAAAGTATTATTATATAA
1 ATATATTTTACATTAAAGTATTACTATATAA
*
1519010 ATATATTTTACATTAGTA-TATTACTATATA
1 ATATATTTTACATTA-AAGTATTACTATATA
1519040 CTTTATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (31 bp):
ATATATTTTACATTAAAGTATTACTATATAA
Found at i:1519771 original size:22 final size:22
Alignment explanation
Indices: 1519720--1519771 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
1519710 TCAATTTAGT
*
1519720 TTAAAATA-ATAAAATTAAAAA
1 TTAAAATATACAAAATTAAAAA
* * *
1519741 TT-TATTATACAAAATTTAAAA
1 TTAAAATATACAAAATTAAAAA
1519762 TTAAAATATA
1 TTAAAATATA
1519772 TCTCTCTTAT
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
20 3 0.13
21 15 0.65
22 5 0.22
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
TTAAAATATACAAAATTAAAAA
Found at i:1521603 original size:77 final size:78
Alignment explanation
Indices: 1521475--1521697 Score: 209
Period size: 77 Copynumber: 2.8 Consensus size: 78
1521465 AAACAGAGTT
* * *
1521475 GGAGTATCCCCGAAGATGAAAAATTGGATATTTTTAAAAGTAAAAACGGGGTTGGAGTATTCCCT
1 GGAGTATCCCCGAAAATGAAAAATTGGATATTTTTAAAAGGAAAAACGGGGTTGGAGTATCCCCT
1521540 CAGAAATGGTGGG
66 CAGAAATGGTGGG
* * * * *
1521553 GGAGTATCCCTGAAAATGAAAATTTTGG-T-TTTTTAGAGGGAAAAGCGGGGTTGGAGTATCCCC
1 GGAGTATCCCCGAAAATGAAAA-ATTGGATATTTTTAAAAGGAAAAACGGGGTTGGAGTATCCCC
*
1521616 TCA-AAGATGGCAGGG
65 TCAGAA-ATGG-TGGG
** * * * * * * * *
1521631 TTGGAGTATCCTTGAAGATGGAAAATTAGATTTTTTTAGAAGTAAAAATGGGGTTAGAGTATCCC
1 --GGAGTATCCCCGAAAATGAAAAATTGGATATTTTTAAAAGGAAAAACGGGGTTGGAGTATCCC
1521696 CT
64 CT
1521698 AAAAATTGGT
Statistics
Matches: 119, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
76 2 0.02
77 36 0.30
78 24 0.20
79 7 0.06
80 20 0.17
81 30 0.25
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.28
Consensus pattern (78 bp):
GGAGTATCCCCGAAAATGAAAAATTGGATATTTTTAAAAGGAAAAACGGGGTTGGAGTATCCCCT
CAGAAATGGTGGG
Found at i:1521804 original size:64 final size:64
Alignment explanation
Indices: 1521663--1521842 Score: 195
Period size: 64 Copynumber: 2.8 Consensus size: 64
1521653 AAATTAGATT
* * * * *
1521663 TTTTTAGAAGTAAAAATGGGGTTAGAGTATCCCCT-AAAAAT--TGGTGGCTGGAGTATTCAATA
1 TTTTTGGAAGTAAAGATGGGGTTGGAGTATCCCCTCAAAAATGGTGG-GGCTGAAATATTCAATA
* * * ** *
1521725 TTTTTGGAAATAAAGACGGGGTTGGAGTATCCTCTCAAAAATGGTGGGGCTGAAATATTTGATG
1 TTTTTGGAAGTAAAGATGGGGTTGGAGTATCCCCTCAAAAATGGTGGGGCTGAAATATTCAATA
* * * *
1521789 TTTTTGGAAGTAAAGATAGGGTTGGAGTATCCCCTCGAAGATGGTGGGGTTGAA
1 TTTTTGGAAGTAAAGATGGGGTTGGAGTATCCCCTCAAAAATGGTGGGGCTGAA
1521843 GTATCCCTGA
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
62 29 0.30
63 6 0.06
64 59 0.61
65 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.29, T:0.31
Consensus pattern (64 bp):
TTTTTGGAAGTAAAGATGGGGTTGGAGTATCCCCTCAAAAATGGTGGGGCTGAAATATTCAATA
Found at i:1521839 original size:28 final size:26
Alignment explanation
Indices: 1521807--1521858 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
1521797 AGTAAAGATA
*
1521807 GGGTTGGAGTATCCCCTCGAAGATGGTG
1 GGGTTGAAGTAT-CCCT-GAAGATGGTG
1521835 GGGTTGAAGTATCCCTGAAGATGG
1 GGGTTGAAGTATCCCTGAAGATGG
1521859 AAAATTGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 8 0.35
27 4 0.17
28 11 0.48
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.25
Consensus pattern (26 bp):
GGGTTGAAGTATCCCTGAAGATGGTG
Found at i:1521899 original size:53 final size:53
Alignment explanation
Indices: 1521836--1522187 Score: 226
Period size: 64 Copynumber: 6.3 Consensus size: 53
1521826 AAGATGGTGG
* * * *
1521836 GGTTGAAGTATCCCTGAAGATGGAAAATTGGATATTTTTAGAAGTAAAAACGA
1 GGTTGGAGTATCCCCGAAGATGGAAAATTCGATATTTTTGGAAGTAAAAACGA
* * ** * *
1521889 GGTTGGAGTATCCCTTCAAAAATGGTGGGGTTGGAGTATTCGATGTTTTTGGAAGTAAAGACG-
1 GGTTGGAGTATCCC--C--GAA-------GATGGAAAATTCGATATTTTTGGAAGTAAAAACGA
* * * *
1521952 GGATTGGAGTATCCCCGTAGATGGAAAATTTGATATTTTTAGAAGTAAAATCGA
1 GG-TTGGAGTATCCCCGAAGATGGAAAATTCGATATTTTTGGAAGTAAAAACGA
* ** * * *
1522006 GGTTGGAGTATCCCCTCAAAAATAGTGAGGCTGGAGTATTCGATGTTTTTGGAAGTAAAGACGG
1 GGTTGGAGTAT-CCC-C---GA-A--GA---TGGAAAATTCGATATTTTTGGAAGTAAAAACGA
* * **
1522070 GGTTGAAGTATCCCCGAAGATGGAAAATTTGATATTTTT--AAGTAAAAATAA
1 GGTTGGAGTATCCCCGAAGATGGAAAATTCGATATTTTTGGAAGTAAAAACGA
* * *
1522121 GGTTGGAATATCCCCGAAGATGAAAAATTCGATGTTTTTGGAAGTAAAAACG-
1 GGTTGGAGTATCCCCGAAGATGGAAAATTCGATATTTTTGGAAGTAAAAACGA
1522173 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
1522188 ATAAGTGACG
Statistics
Matches: 225, Mismatches: 48, Indels: 53
0.69 0.15 0.16
Matches are distributed among these distances:
51 42 0.19
52 14 0.06
53 72 0.32
54 5 0.02
55 1 0.00
56 2 0.01
57 2 0.01
58 1 0.00
59 2 0.01
60 1 0.00
61 2 0.01
62 2 0.01
63 5 0.02
64 74 0.33
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.30
Consensus pattern (53 bp):
GGTTGGAGTATCCCCGAAGATGGAAAATTCGATATTTTTGGAAGTAAAAACGA
Found at i:1522048 original size:117 final size:117
Alignment explanation
Indices: 1521838--1522135 Score: 458
Period size: 117 Copynumber: 2.6 Consensus size: 117
1521828 GATGGTGGGG
* * *
1521838 TTGAAGTATCCCTGAAGATGGAAAATTGGATATTTTTAGAAGTAAAAACGAGGTTGGAGTATCCC
1 TTGAAGTATCCCCGAAGATGGAAAATTTGATATTTTTAGAAGTAAAATCGAGGTTGGAGTATCCC
* * * *
1521903 TTCAAAAATGGTGGGGTTGGAGTATTCGATGTTTTTGGAAGTAAAGACGGGA
66 CTCAAAAATAGTGAGGCTGGAGTATTCGATGTTTTTGGAAGTAAAGACGGGA
* *
1521955 TTGGAGTATCCCCGTAGATGGAAAATTTGATATTTTTAGAAGTAAAATCGAGGTTGGAGTATCCC
1 TTGAAGTATCCCCGAAGATGGAAAATTTGATATTTTTAGAAGTAAAATCGAGGTTGGAGTATCCC
*
1522020 CTCAAAAATAGTGAGGCTGGAGTATTCGATGTTTTTGGAAGTAAAGACGGGG
66 CTCAAAAATAGTGAGGCTGGAGTATTCGATGTTTTTGGAAGTAAAGACGGGA
* *
1522072 TTGAAGTATCCCCGAAGATGGAAAATTTGATATTTTT--AAGTAAAAAT-AAGGTTGGAATATCC
1 TTGAAGTATCCCCGAAGATGGAAAATTTGATATTTTTAGAAGT-AAAATCGAGGTTGGAGTATCC
1522134 CC
65 CC
1522136 GAAGATGAAA
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
115 19 0.11
116 5 0.03
117 142 0.86
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (117 bp):
TTGAAGTATCCCCGAAGATGGAAAATTTGATATTTTTAGAAGTAAAATCGAGGTTGGAGTATCCC
CTCAAAAATAGTGAGGCTGGAGTATTCGATGTTTTTGGAAGTAAAGACGGGA
Found at i:1522133 original size:51 final size:51
Alignment explanation
Indices: 1522043--1522187 Score: 141
Period size: 51 Copynumber: 2.8 Consensus size: 51
1522033 AGGCTGGAGT
* *** *
1522043 ATTCGATGTTTTTGGAAGTAAAGACGGGGTT-GAAGTATCCCCGAAGATGGAAA
1 ATTCGATATTTTT-GAAGTAAA-AAAAGGTTGGAA-TATCCCCGAAGATGAAAA
*
1522096 ATTTGATATTTTT-AAGTAAAAATAAGGTTGGAATATCCCCGAAGATGAAAA
1 ATTCGATATTTTTGAAGTAAAAA-AAGGTTGGAATATCCCCGAAGATGAAAA
* ** *
1522147 ATTCGATGTTTTTGGAAGTAAAAACGGGTTGGAGTATCCCC
1 ATTCGATATTTTT-GAAGTAAAAAAAGGTTGGAATATCCCC
1522188 ATAAGTGACG
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
50 1 0.01
51 39 0.51
52 17 0.22
53 20 0.26
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (51 bp):
ATTCGATATTTTTGAAGTAAAAAAAGGTTGGAATATCCCCGAAGATGAAAA
Found at i:1522947 original size:15 final size:16
Alignment explanation
Indices: 1522917--1522953 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
1522907 ACACACTAAA
1522917 AAAAAGAATTTTTTTTT
1 AAAAAGAA-TTTTTTTT
1522934 AAAAAGAA-TTTTTTT
1 AAAAAGAATTTTTTTT
1522949 AAAAA
1 AAAAA
1522954 AAAAAGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 12 0.60
17 8 0.40
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (16 bp):
AAAAAGAATTTTTTTT
Found at i:1522954 original size:17 final size:17
Alignment explanation
Indices: 1522915--1522955 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
1522905 GGACACACTA
1522915 AAAAAAAGAATTTTTTT
1 AAAAAAAGAATTTTTTT
**
1522932 TTAAAAAGAATTTTTTT
1 AAAAAAAGAATTTTTTT
1522949 AAAAAAA
1 AAAAAAA
1522956 AAAGAAGAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (17 bp):
AAAAAAAGAATTTTTTT
Found at i:1523991 original size:18 final size:19
Alignment explanation
Indices: 1523970--1524018 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1523960 TTTATTTTTT
1523970 TTTTTGT-TTTTTC-TATTG
1 TTTTTGTATTTTTCAT-TTG
*
1523988 TTTTTTTATTTTTCATTTG
1 TTTTTGTATTTTTCATTTG
1524007 TTTTTGTCATTT
1 TTTTTGT-ATTT
1524019 GATGACCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 15 0.58
20 5 0.19
ACGTcount: A:0.08, C:0.06, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTTGTATTTTTCATTTG
Found at i:1523991 original size:19 final size:19
Alignment explanation
Indices: 1523963--1524011 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
1523953 TTCCTTCTTT
* *
1523963 ATTTTTTTTTTTGTTTTTTC
1 ATTTGTTTTTTT-ATTTTTC
1523983 -TATTGTTTTTTTATTTTTC
1 AT-TTGTTTTTTTATTTTTC
1524002 ATTTGTTTTT
1 ATTTGTTTTT
1524012 GTCATTTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.08, C:0.04, G:0.06, T:0.82
Consensus pattern (19 bp):
ATTTGTTTTTTTATTTTTC
Found at i:1524725 original size:69 final size:68
Alignment explanation
Indices: 1524647--1525164 Score: 409
Period size: 69 Copynumber: 7.7 Consensus size: 68
1524637 GTGTAGGCTA
* * * *
1524647 AAAGGATAAGAGGTGCTACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCGCTCTGCTCTTTGAGG
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGC-ATCTGCTCTTTGAGG
1524712 ATTG
65 ATTG
* * * * **
1524716 AAATGATAAGAGGTGCCACCAACTTGTGTTAGCTTTAAAAAGAAAAAGCATCTTGCTCTTTGAGG
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCATC-TGCTCTTTGAGG
1524781 ATTG
65 ATTG
* * * * * * * **
1524785 AGAGGATAAAAAGTGTCACTACCTTGTGTGGGTTTTAGAAAGAAAAAACATCTTATTCTTTGAGG
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCATC-TGCTCTTTGAGG
1524850 ATTG
65 ATTG
* * * * *
1524854 AAAGGATAAAAAGTGCCACCGGCTTGTGTGAGCTTTAGAAAGAAAAAACATCCTGCTTTTTGAGG
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCAT-CTGCTCTTTGAGG
1524919 ATTG
65 ATTG
** * * * * * * *
1524923 AAAGGATAAAAAGTGCCACTGGCTTGTATGGGTTTTAGAAAGAAAAAACCT-TACTCTTTAAGGA
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCATCTGCTCTTTGAGGA
*
1524987 CTG
66 TTG
* * * **
1524990 AAAGGACAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAGTGTCCTGCTCTTTGA--
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCAT-CTGCTCTTTGAGG
1525053 A--G
65 ATTG
** * * * *
1525055 --ACCA-AAAGA-TGCCACCAGCTTGTGTGGGCTTTAAGAAAGAAAATGAG-TTCTTCTTTTTGA
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAA-AAAGAAAA--AGCATCTGCTCTTTGA
*
1525115 GGACT-
63 GGATTG
* * *
1525120 -AA--A-AAAGAGTGCCACCAACTTGGGTGGGCTTTTAAAAAGAAAAAG
1 AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGC-TTTAAAAAGAAAAAG
1525165 GAAAAGAGGC
Statistics
Matches: 377, Mismatches: 58, Indels: 34
0.80 0.12 0.07
Matches are distributed among these distances:
61 23 0.06
62 21 0.06
63 5 0.01
64 9 0.02
65 27 0.07
66 6 0.02
67 57 0.15
68 2 0.01
69 226 0.60
70 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (68 bp):
AAAGGATAAAAAGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCATCTGCTCTTTGAGGA
TTG
Found at i:1525015 original size:67 final size:68
Alignment explanation
Indices: 1524647--1525036 Score: 422
Period size: 69 Copynumber: 5.7 Consensus size: 68
1524637 GTGTAGGCTA
* * * * * * * *
1524647 AAAGGATAAGAGGTGCTACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCGCTCTGCTCTTTGAGG
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAACACT-TACTCTTTGAGG
1524712 ATTG
65 ATTG
* * * * * ** * * *
1524716 AAATGATAAGAGGTGCCACCAACTTGTGTTAGCTTTAAAAAGAAAAAGCATCTTGCTCTTTGAGG
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAACA-CTTACTCTTTGAGG
1524781 ATTG
65 ATTG
* * * * *
1524785 AGAGGATAAAAAGTGTCACTACCTTGTGTGGGTTTTAGAAAGAAAAAACATCTTATTCTTTGAGG
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAACA-CTTACTCTTTGAGG
1524850 ATTG
65 ATTG
** * * * *
1524854 AAAGGATAAAAAGTGCCACCGGCTTGTGTGAGCTTTAGAAAGAAAAAACATCCTGCTTTTTGAGG
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAACA-CTTACTCTTTGAGG
1524919 ATTG
65 ATTG
* * * *
1524923 AAAGGATAAAAAGTGCCACTGGCTTGTATGGGTTTTAGAAAGAAAAAAC-CTTACTCTTTAAGGA
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAACACTTACTCTTTGAGGA
*
1524987 CTG
66 TTG
*
1524990 AAAGGACAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAA
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAA
1525037 GTGTCCTGCT
Statistics
Matches: 276, Mismatches: 44, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
67 56 0.20
69 218 0.79
70 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.27
Consensus pattern (68 bp):
AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAACACTTACTCTTTGAGGA
TTG
Found at i:1525044 original size:136 final size:137
Alignment explanation
Indices: 1524647--1525052 Score: 499
Period size: 138 Copynumber: 3.0 Consensus size: 137
1524637 GTGTAGGCTA
* * * * * * * * *
1524647 AAAGGATAAGAGGTGCTACCAGCTTGTGTGGGCTTTAAAAAGAAAAAGCGCTCTGCTCTTTGAGG
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGTTTTAGAAAGAAAAAACACT-TACTCTTTGAGG
* * * * * * *
1524712 ATTGAAATGATAAGAGGTGCCACCAACTTGTGTTAGCTTTAAAAAGAAAAAGCATCTTGCTCTTT
65 ATTGAAAGGATAAAAAGTGCCACCAGCTTGTGTGAGCTTTAGAAAGAAAAAGCATCCTGCTCTTT
1524777 GAGGATTG
130 GAGGATTG
* * * *
1524785 AGAGGATAAAAAGTGTCACTACCTTGTGTGGGTTTTAGAAAGAAAAAACATCTTATTCTTTGAGG
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGTTTTAGAAAGAAAAAACA-CTTACTCTTTGAGG
* * *
1524850 ATTGAAAGGATAAAAAGTGCCACCGGCTTGTGTGAGCTTTAGAAAGAAAAAACATCCTGCTTTTT
65 ATTGAAAGGATAAAAAGTGCCACCAGCTTGTGTGAGCTTTAGAAAGAAAAAGCATCCTGCTCTTT
1524915 GAGGATTG
130 GAGGATTG
* * *
1524923 AAAGGATAAAAAGTGCCACTGGCTTGTATGGGTTTTAGAAAGAAAAAAC-CTTACTCTTTAAGGA
1 AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGTTTTAGAAAGAAAAAACACTTACTCTTTGAGGA
* * * * **
1524987 CTGAAAGGACAAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAGTGTCCTGCTCTTTG
66 TTGAAAGGATAAAAAGTGCCACCAGCTTGTGTGAGCTTTAGAAAGAAAAAGCATCCTGCTCTTTG
1525052 A
131 A
1525053 AGACCAAAAG
Statistics
Matches: 228, Mismatches: 39, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
136 70 0.31
138 156 0.68
139 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (137 bp):
AAAGGATAAAAAGTGCCACTAGCTTGTGTGGGTTTTAGAAAGAAAAAACACTTACTCTTTGAGGA
TTGAAAGGATAAAAAGTGCCACCAGCTTGTGTGAGCTTTAGAAAGAAAAAGCATCCTGCTCTTTG
AGGATTG
Found at i:1525149 original size:65 final size:63
Alignment explanation
Indices: 1524997--1525287 Score: 205
Period size: 63 Copynumber: 4.5 Consensus size: 63
1524987 CTGAAAGGAC
* * *
1524997 AAAA-AGTGCCACTAGCTTGTGTGGGCTTT-AGAAAGAAAAAGTGTCCTGCTCTTTGAAGACC
1 AAAAGAGTGCCACCAGCTTGTGTGGGCTTTAAGAAAGAAAAAGAGTCCTGCTCTTTGAAGACA
* * * * *
1525058 AAAAGA-TGCCACCAGCTTGTGTGGGCTTTAAGAAAGAAAATGAGTTCTTCTTTTTGAGGACTAA
1 AAAAGAGTGCCACCAGCTTGTGTGGGCTTTAAGAAAGAAAAAGAGTCCTGCTCTTTGAAGAC--A
* * * * *
1525122 AAAAGAGTGCCACCAACTTGGGTGGGCTTTTAAAAAGAAAAAGGAAAAGAGGCATCCTACTTTTT
1 AAAAGAGTGCCACCAGCTTGTGTGGGC-TTT---AAG--AAAGAAAAAGA-G--TCCTGCTCTTT
* *
1525187 GAGGACT
57 GAAGACA
* * * * * * * * * *
1525194 AAAAG-GTGCCACCAGCTTTTATGGGCTTTTAATAAGGAAAAGGCGTTCTGCTCTTTAAAAACT
1 AAAAGAGTGCCACCAGCTTGTGTGGGC-TTTAAGAAAGAAAAAGAGTCCTGCTCTTTGAAGACA
*
1525257 AAAAG-GTGCCACCAGCTGGTGTGGGCTTTAA
1 AAAAGAGTGCCACCAGCTTGTGTGGGCTTTAA
1525288 TGGGCAAGAG
Statistics
Matches: 183, Mismatches: 33, Indels: 27
0.75 0.14 0.11
Matches are distributed among these distances:
61 26 0.14
62 31 0.17
63 35 0.19
64 6 0.03
65 19 0.10
66 10 0.05
68 2 0.01
69 3 0.02
71 30 0.16
72 6 0.03
74 15 0.08
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26
Consensus pattern (63 bp):
AAAAGAGTGCCACCAGCTTGTGTGGGCTTTAAGAAAGAAAAAGAGTCCTGCTCTTTGAAGACA
Found at i:1525222 original size:197 final size:192
Alignment explanation
Indices: 1524992--1525430 Score: 460
Period size: 197 Copynumber: 2.2 Consensus size: 192
1524982 AAGGACTGAA
* * * * *
1524992 AGGAC-AAAAAGTGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAGTGTCCTGCTCTTTGAAGA
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTA-AAAGAAAAAGCGTCCTGCTCTTTAAAAA
* * * *
1525056 CCAAAAGATGCCACCAGCTTGTGTGGGCTTTAA-G-AA-AGAAAATG-AGTTCTTCTTTTTGA-G
65 CCAAAAGATGCCACCAGCTGGTGTGGGCTTTAAGGCAAGAGAAAAGGCA-TTCTACTCTTT-ATG
*
1525116 GACTAAAAAAGAGTGCCACCAACTTGGGTGGGCTTTTAAAAAGAAAAAGGAAAAGAGGCATCCTA
128 GACT--AAAAG-GTGCCACCAACTTAGGTGGGC-TTTAAAAAGAAAAA-G-AAA-AGGCATCCTA
1525181 CTT-TTTG
186 -TTCTTTG
* * * *
1525188 AGGACTAAAAGGTGCCACCAGCTTTTATGGGCTTTTAATAAGGAAAAGGCGTTCTGCTCTTTAAA
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGC-TTTAA-AA-GAAAAAGCGTCCTGCTCTTTAAA
* *
1525253 AACTAAAAGGTGCCACCAGCTGGTGTGGGCTTTAATGGGCAAGAGAAAAGGCATTCTACTCTTTA
63 AACCAAAAGATGCCACCAGCTGGTGTGGGCTTTAA--GGCAAGAGAAAAGGCATTCTACTCTTTA
* * * * * *
1525318 TGGACTAAAAGGTGGCACCAGCTTATGTGGGCTTTCAAAAGGAAAAGAAAAGGCATCTTATTCTT
126 TGGACTAAAAGGTGCCACCAACTTAGGTGGGCTTTAAAAAGAAAAAGAAAAGGCATCCTATTCTT
1525383 TG
191 TG
* * *
1525385 AGGACTAAAAGGTACTACCAGCTTGTGTAGGCTTTAAAAGAAAAAG
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAAG
1525431 AAAAGTGTCA
Statistics
Matches: 203, Mismatches: 28, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
194 6 0.03
195 2 0.01
196 12 0.06
197 63 0.31
198 9 0.04
199 51 0.25
200 12 0.06
201 17 0.08
202 6 0.03
203 3 0.01
204 21 0.10
205 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (192 bp):
AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAAGCGTCCTGCTCTTTAAAAAC
CAAAAGATGCCACCAGCTGGTGTGGGCTTTAAGGCAAGAGAAAAGGCATTCTACTCTTTATGGAC
TAAAAGGTGCCACCAACTTAGGTGGGCTTTAAAAAGAAAAAGAAAAGGCATCCTATTCTTTG
Found at i:1525337 original size:67 final size:65
Alignment explanation
Indices: 1524992--1525421 Score: 287
Period size: 67 Copynumber: 6.6 Consensus size: 65
1524982 AAGGACTGAA
* * * * *
1524992 AGGAC-AAAAAGTGCCACTAGCTTGTGTGGGCTTT-A-GAAAGA-AAAAGTG--TCCTGCTCTTT
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAATGGAAGAGAAAAG-GCATTCTACTCTTT
1525051 G
65 G
* * * * * *
1525052 AAGACCAAAAGATGCCACCAGCTTGTGTGGGCTTTAA--GAA-AGAAAATG-AGTTCTTCTTTTT
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAATGGAAGAGAAAAGGCA-TTCTACTCTTT
1525113 G
65 G
* * * * * *
1525114 AGGACTAAAAAAGAGTGCCACCAACTTGGGTGGGCTTTTAAAAAGAAAAAGGAAAAGAGGCATCC
1 AGGACT--AAAAG-GTGCCACCAGCTTGTGTGGGC-TTT--AATGGAAGA-G-AAA-AGGCATTC
*
1525179 TACTTTTTG
57 TACTCTTTG
* * * *
1525188 AGGACTAAAAGGTGCCACCAGCTTTTATGGGCTTTTAAT--AAG-GAAAAGGCGTTCTGCTCTTT
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGC-TTTAATGGAAGAGAAAAGGCATTCTACTCTTT
*
1525250 A
65 G
** *
1525251 AAAACTAAAAGGTGCCACCAGCTGGTGTGGGCTTTAATGGGCAAGAGAAAAGGCATTCTACTCTT
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAT-GG-AAGAGAAAAGGCATTCTACTCTT
1525316 T-
64 TG
* * * * *
1525317 ATGGACTAAAAGGTGGCACCAGCTTATGTGGGCTTTCAAAAGGAAAAGAAAAGGCA-TCTTATTC
1 A-GGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTT--AATGGAAGAGAAAAGGCATTC-TACTC
1525381 TTTG
62 TTTG
* * *
1525385 AGGACTAAAAGGTACTACCAGCTTGTGTAGGCTTTAA
1 AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAA
1525422 AAGAAAAAGA
Statistics
Matches: 293, Mismatches: 49, Indels: 51
0.75 0.12 0.13
Matches are distributed among these distances:
60 6 0.02
61 32 0.11
62 20 0.07
63 39 0.13
64 8 0.03
65 21 0.07
66 9 0.03
67 97 0.33
68 5 0.02
69 4 0.01
70 2 0.01
71 22 0.08
72 6 0.02
73 3 0.01
74 18 0.06
75 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (65 bp):
AGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAATGGAAGAGAAAAGGCATTCTACTCTTTG
Found at i:1540475 original size:2 final size:2
Alignment explanation
Indices: 1540470--1540505 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1540460 GTGTTTTCAA
1540470 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1540506 TAGTATAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1542350 original size:57 final size:58
Alignment explanation
Indices: 1542280--1542465 Score: 143
Period size: 58 Copynumber: 3.2 Consensus size: 58
1542270 ATATTAATGT
* * * *
1542280 AAATGACCTAAATGATATT-AAGATGCACAAAA-TGACAT-AAAGTCCTTAGATCATGGA
1 AAATAACCTAAATGACATTCAA-ATGCACAAAATTG-CATCAAAGTCCCTAGATCATAGA
* * * * *
1542337 AAATAACCTAAATGGCATTCAAATTCACAAAATTGCATCCAAGTCCCTAGATTATAGT
1 AAATAACCTAAATGACATTCAAATGCACAAAATTGCATCAAAGTCCCTAGATCATAGA
* * * * *
1542395 AAATAACCTAAATGGCA-TCAAAATATGTA-AAAATTTCATAAAAGTCACTAGATCAT-GA
1 AAATAACCTAAATGACATTC--AA-ATGCACAAAATTGCATCAAAGTCCCTAGATCATAGA
1542453 AAA-AGACCTAAAT
1 AAATA-ACCTAAAT
1542466 AATATCAACA
Statistics
Matches: 105, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
57 31 0.30
58 47 0.45
59 24 0.23
60 3 0.03
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.25
Consensus pattern (58 bp):
AAATAACCTAAATGACATTCAAATGCACAAAATTGCATCAAAGTCCCTAGATCATAGA
Found at i:1542400 original size:58 final size:57
Alignment explanation
Indices: 1542250--1542416 Score: 153
Period size: 57 Copynumber: 2.9 Consensus size: 57
1542240 ATCCCTAAAA
* * * * **
1542250 AAAACTGCATCCAAATCCCCATATTA-ATGTAAATGACCTAAATGATATT-AAGATGCAC
1 AAAA-TGCATCCAAGTCCCTAGATTATA-GTAAATAACCTAAATGGCATTCAA-ATGCAC
* * * * * *
1542308 AAAATGACAT-AAAGTCCTTAGATCATGGAAAATAACCTAAATGGCATTCAAATTCAC
1 AAAATG-CATCCAAGTCCCTAGATTATAGTAAATAACCTAAATGGCATTCAAATGCAC
1542365 AAAATTGCATCCAAGTCCCTAGATTATAGTAAATAACCTAAATGGCA-TCAAA
1 AAAA-TGCATCCAAGTCCCTAGATTATAGTAAATAACCTAAATGGCATTCAAA
1542417 ATATGTAAAA
Statistics
Matches: 87, Mismatches: 17, Indels: 11
0.76 0.15 0.10
Matches are distributed among these distances:
57 45 0.52
58 42 0.48
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (57 bp):
AAAATGCATCCAAGTCCCTAGATTATAGTAAATAACCTAAATGGCATTCAAATGCAC
Found at i:1544124 original size:21 final size:21
Alignment explanation
Indices: 1544096--1544174 Score: 106
Period size: 21 Copynumber: 3.8 Consensus size: 21
1544086 AAAAACCTGA
1544096 CATTGTATCAATACAATAAAG
1 CATTGTATCAATACAATAAAG
*
1544117 CCTTGTATCAATACAAT-AAG
1 CATTGTATCAATACAATAAAG
* **
1544137 CATAGTATCAATACAATATGG
1 CATTGTATCAATACAATAAAG
*
1544158 CTTTGTATCAATACAAT
1 CATTGTATCAATACAAT
1544175 CCATGTTACA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
20 18 0.36
21 32 0.64
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (21 bp):
CATTGTATCAATACAATAAAG
Done.