Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3599867
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 51021 characters in sequence are not A, C, G, or T
File 11 of 25
Found at i:1544740 original size:11 final size:11
Alignment explanation
Indices: 1544724--1544756 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
1544714 TAAAAAATTA
1544724 AATAATTATTT
1 AATAATTATTT
1544735 AATAATTATTT
1 AATAATTATTT
1544746 AATAA-TATTT
1 AATAATTATTT
1544756 A
1 A
1544757 CATGAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
AATAATTATTT
Found at i:1545899 original size:128 final size:128
Alignment explanation
Indices: 1545669--1545922 Score: 413
Period size: 128 Copynumber: 2.0 Consensus size: 128
1545659 TACTAAAGTA
* * *
1545669 AACCACATGTATATCTCTACCTAAGATCTTGAGAAAATCTATATTTTTTTCATTTACTTTCCATT
1 AACCACATGTATATCTCTACCTAAAATCCTGAGAAAATCTATATTTTTTT-ATTTACTTTCCACT
*
1545734 GCATATGTTTAACTTGATTAAAAATTTTATGTTTCTTATGATAAACATGTAGCCCAGAAGTCCTC
65 GCATATGTTTAACTTGATTAAAAATTTTATGTTTCTTATGATAAACAT-AAGCCCAGAAGTCCTC
*
1545799 AACCACATGTATATCTCTACCTAAAATCCTGAGAAAAT-TCATGTTTTTTT-TTTACTTTCCACT
1 AACCACATGTATATCTCTACCTAAAATCCTGAGAAAATCT-ATATTTTTTTATTTACTTTCCACT
*
1545862 GCATATGTTTAACTTGATTAAAAATTTTATGTTTCTTATGATAAACATAAGCCTAGAAGTC
65 GCATATGTTTAACTTGATTAAAAATTTTATGTTTCTTATGATAAACATAAGCCCAGAAGTC
1545923 TCTTCACCCT
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
127 11 0.09
128 60 0.51
129 1 0.01
130 45 0.38
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (128 bp):
AACCACATGTATATCTCTACCTAAAATCCTGAGAAAATCTATATTTTTTTATTTACTTTCCACTG
CATATGTTTAACTTGATTAAAAATTTTATGTTTCTTATGATAAACATAAGCCCAGAAGTCCTC
Found at i:1547013 original size:5 final size:5
Alignment explanation
Indices: 1547005--1547036 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
1546995 AAGATGAGAT
*
1547005 GAAAC GAAAC GAAAC GAAAC GAAAT GAAAC GA
1 GAAAC GAAAC GAAAC GAAAC GAAAC GAAAC GA
1547037 GAAAAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.59, C:0.16, G:0.22, T:0.03
Consensus pattern (5 bp):
GAAAC
Found at i:1547240 original size:6 final size:7
Alignment explanation
Indices: 1547222--1547249 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
1547212 GTGAATTAAG
1547222 TAAAAAA
1 TAAAAAA
1547229 TAAAAAA
1 TAAAAAA
1547236 TAAAAAA
1 TAAAAAA
1547243 TAAAAAA
1 TAAAAAA
1547250 GAGTTAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
TAAAAAA
Found at i:1548315 original size:113 final size:112
Alignment explanation
Indices: 1548092--1548299 Score: 274
Period size: 114 Copynumber: 1.8 Consensus size: 112
1548082 CAATCTAAAC
* ** * * * *
1548092 ATCGAAAACCTCATTGATTGCTAAAAAAAAATTCACAAAGATTAACTAAACTAATCAAAATTCCA
1 ATCGAAAACCTCAATGATCACTAAAAAAAAAGTCACAAAGATCAACTAAACAAAACAAAATTCCA
* *
1548157 TAGATAAAAGTAAACAACTAAGCAATTCTCCAAGCAAAAATCTTGCA
66 CAGACAAAAGTAAACAACTAAGCAATTCTCCAAGCAAAAATCTTGCA
* *
1548204 ATCGAAAACCTCAATGATCACTGAAAGAAAGAAGTCACAAAGATCATCTAAACAAAACAAAATTC
1 ATCGAAAACCTCAATGATCACT-AAA-AAAAAAGTCACAAAGATCAACTAAACAAAACAAAATTC
* *
1548269 CGCA-ACAAAGGTAAACAACTAAGCAATTCTC
64 CACAGACAAAAGTAAACAACTAAGCAATTCTC
1548300 TAGATAGAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
112 19 0.23
113 28 0.35
114 34 0.42
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (112 bp):
ATCGAAAACCTCAATGATCACTAAAAAAAAAGTCACAAAGATCAACTAAACAAAACAAAATTCCA
CAGACAAAAGTAAACAACTAAGCAATTCTCCAAGCAAAAATCTTGCA
Found at i:1550864 original size:58 final size:59
Alignment explanation
Indices: 1550744--1551089 Score: 213
Period size: 58 Copynumber: 5.7 Consensus size: 59
1550734 CTTTTATGCT
* * ** *
1550744 ATTTCATACATTTTAGAACCATTTTAGTCA--TTTCATGATTT-AGGGTTTATTATGCA
1 ATTTCATGCATTTTAGTACCATTTTAGTCATTTTTCATGATTTGAGGAATTATTATGTA
*
1550800 ATTTCATGCATTTTAGTACCATTTTAGTCATTTTCCATGATTTGA-GAATTATTATGTA
1 ATTTCATGCATTTTAGTACCATTTTAGTCATTTTTCATGATTTGAGGAATTATTATGTA
* ** * * * ** * *
1550858 ATTTCATGCACTTTAAAACCATTTTAATCATTTTCCATGACCTATGATCTATGGTTATTATGTG
1 ATTTCATGCATTTTAGTACCATTTTAGTCATTTTTCATGA--TTTGA-GGA--ATTATTATGTA
* * * * *
1550922 ATTTCATGCATTTTGACATCATTTTAATCATTTTAATCATTTTTCATTATTT-AGGGATTATTAT
1 ATTTCATGCA-TTT----T-A--GT-ACCATTTTAGTCATTTTTCATGATTTGAGGAATTATTAT
1550986 GTA
57 GTA
* * * * * * *
1550989 ATTTTATTCATTATAAG-ACCATTATAGTTATTTTTCATGA-TTGA-GAGGTTATTACGTA
1 ATTTCATGCATT-TTAGTACCATTTTAGTCATTTTTCATGATTTGAGGA-ATTATTATGTA
* * *
1551047 ATTTCATGCATTTAAGTACTATTTTAGTCATTTTTCATAATTT
1 ATTTCATGCATTTTAGTACCATTTTAGTCATTTTTCATGATTT
1551090 AGCGACCATT
Statistics
Matches: 223, Mismatches: 44, Indels: 43
0.72 0.14 0.14
Matches are distributed among these distances:
56 28 0.13
57 7 0.03
58 113 0.51
59 3 0.01
60 4 0.02
62 2 0.01
64 19 0.09
65 2 0.01
66 2 0.01
67 18 0.08
69 1 0.00
70 2 0.01
71 2 0.01
73 20 0.09
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (59 bp):
ATTTCATGCATTTTAGTACCATTTTAGTCATTTTTCATGATTTGAGGAATTATTATGTA
Found at i:1550951 original size:9 final size:9
Alignment explanation
Indices: 1550939--1550964 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
1550929 GCATTTTGAC
1550939 ATCATTTTA
1 ATCATTTTA
1550948 ATCATTTTA
1 ATCATTTTA
1550957 ATCATTTT
1 ATCATTTT
1550965 TCATTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.58
Consensus pattern (9 bp):
ATCATTTTA
Found at i:1552106 original size:13 final size:13
Alignment explanation
Indices: 1552088--1552114 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1552078 ACATTATGCT
1552088 TTGTATCGATACA
1 TTGTATCGATACA
1552101 TTGTATCGATACA
1 TTGTATCGATACA
1552114 T
1 T
1552115 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1552112 original size:33 final size:32
Alignment explanation
Indices: 1552070--1552133 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
1552060 CCATCCAGAA
* *
1552070 GTATCGATACATTATGCTTTGTATCGATACATT
1 GTATCGATACATGAT-CATTGTATCGATACATT
1552103 GTATCGATACATGATCATTGTATCGATACAT
1 GTATCGATACATGATCATTGTATCGATACAT
1552134 GGACAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (32 bp):
GTATCGATACATGATCATTGTATCGATACATT
Found at i:1552123 original size:19 final size:18
Alignment explanation
Indices: 1552098--1552155 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
1552088 TTGTATCGAT
1552098 ACATTGTATCGATACATG
1 ACATTGTATCGATACATG
1552116 ATCATTGTATCGATACATGG
1 A-CATTGTATCGATACAT-G
1552136 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1552155 A
1 A
1552156 AACTGACAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 17 0.46
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:1552144 original size:20 final size:20
Alignment explanation
Indices: 1552099--1552154 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
1552089 TGTATCGATA
1552099 CATTGTATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
1552118 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
1552137 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
1552155 AAACTGACAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:1552658 original size:13 final size:13
Alignment explanation
Indices: 1552640--1552667 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1552630 CATTACTCAA
1552640 TGTATCGATACAT
1 TGTATCGATACAT
1552653 TGTATCGATACAT
1 TGTATCGATACAT
1552666 TG
1 TG
1552668 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1552677 original size:33 final size:33
Alignment explanation
Indices: 1552622--1552685 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
1552612 CAAGGAAATC
*
1552622 TATCGATACATTACTCAATGTATCGATACATTG
1 TATCGATACATTACTCAATGTATCAATACATTG
**
1552655 TATCGATACATTGA-TCTTTGTATCAATACAT
1 TATCGATACATT-ACTCAATGTATCAATACAT
1552686 CTGGGAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (33 bp):
TATCGATACATTACTCAATGTATCAATACATTG
Found at i:1559876 original size:20 final size:20
Alignment explanation
Indices: 1559853--1559898 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1559843 AAGGTGCTAG
1559853 ACATGCT-ATAAATGCATGAA
1 ACATGCTCA-AAATGCATGAA
1559873 ACATGGCTCAAAATGCATGAA
1 ACAT-GCTCAAAATGCATGAA
*
1559894 TCATG
1 ACATG
1559899 GGCTATTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 17 0.74
22 1 0.04
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (20 bp):
ACATGCTCAAAATGCATGAA
Found at i:1560771 original size:20 final size:20
Alignment explanation
Indices: 1560746--1560871 Score: 119
Period size: 20 Copynumber: 5.8 Consensus size: 20
1560736 ATTTGCCTGC
1560746 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
1560766 ATGTATCGATACATCTGGGTAAAATTTCCA
1 ATGTATCGATACAT-T--G---AA--T--A
**
1560796 GATGTATCGATACAAAG-ATCA
1 -ATGTATCGATACATTGAAT-A
1560817 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
1560837 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
1560857 ATGTATCGATACATT
1 ATGTATCGATACATT
1560872 TCCCTTGCAG
Statistics
Matches: 90, Mismatches: 4, Indels: 24
0.76 0.03 0.20
Matches are distributed among these distances:
20 64 0.71
21 5 0.06
22 1 0.01
23 1 0.01
24 1 0.01
26 2 0.02
28 2 0.02
30 1 0.01
31 13 0.14
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:1561788 original size:155 final size:155
Alignment explanation
Indices: 1561504--1561801 Score: 524
Period size: 155 Copynumber: 1.9 Consensus size: 155
1561494 GATAAAGGTA
* *
1561504 CCAATATGCTGATTCAGGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGAT
1 CCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATATGCTGAT
** *
1561569 TCACGGTCAATGACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCTAACGA
66 TCACGGTCAACAACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGA
1561634 CATTGGTTAAGGAATGTTACGGATG
131 CATTGGTTAAGGAATGTTACGGATG
1561659 CCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATATGCTGAT
1 CCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATATGCTGAT
* * *
1561724 TCACGGTCAGCAACATTAGACTTGGAGATGAAAAGAATGCCAATGTGTTGATTCAAGGCCAACGA
66 TCACGGTCAACAACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGA
1561789 CATTGGTTAAGGA
131 CATTGGTTAAGGA
1561802 CGACAAAAGC
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
155 135 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (155 bp):
CCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATATGCTGAT
TCACGGTCAACAACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGA
CATTGGTTAAGGAATGTTACGGATG
Found at i:1561855 original size:102 final size:102
Alignment explanation
Indices: 1561710--1561896 Score: 232
Period size: 102 Copynumber: 1.8 Consensus size: 102
1561700 TGAAAAGAAT
* * ** * * *
1561710 GTCAATATGCTGATTCACGGTCAGCAACATTAGACTTGGAGATGA-AAAGAATGCCAATGTGTTG
1 GTCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGACAAA-AACGCCAATATGCTG
1561774 ATTCAAGGCCAACGACATTGGTTAAGGACGACAAAAGC
65 ATTCAAGGCCAACGACATTGGTTAAGGACGACAAAAGC
* * * * *
1561812 GTCAATATGTTGATTCAAGGCCAGCAATATTGGACTTAAAGATGACAAATACGCCGATATGCTGA
1 GTCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGACAAAAACGCCAATATGCTGA
* *
1561877 TTCAAGGCCAGCGATATTGG
66 TTCAAGGCCAACGACATTGG
1561897 ACTTAAAGAT
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
102 67 0.96
103 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (102 bp):
GTCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGACAAAAACGCCAATATGCTGA
TTCAAGGCCAACGACATTGGTTAAGGACGACAAAAGC
Found at i:1561881 original size:52 final size:52
Alignment explanation
Indices: 1561504--1561909 Score: 293
Period size: 52 Copynumber: 7.9 Consensus size: 52
1561494 GATAAAGGTA
* * * * *
1561504 CCAATATGCTGATTCAGGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAGAACG
* * * * ** * * * *
1561556 TCAATGTGCTGATTCACGGTCAATGACATTAGACTTGAAGATGAAAAGAATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAGAACG
* * * * * ** * * *
1561608 CCAATGTGCTGATTCAAGGCTAACGACATTGG--TTAAGGAATGTTACGGATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-ATGAAAAGAACG
* * * *
1561659 CCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAGAACG
* * * * * * ** *
1561711 TCAATATGCTGATTCACGGTCAGCAACATTAGACTTGGAGATGAAAAGAATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAGAACG
* * * * * * *
1561763 CCAATGTGTTGATTCAAGGCCAACGACATTGG--TTAAGGACGACAAA-AGCG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAAGAACG
* * * *
1561813 TCAATATGTTGATTCAAGGCCAGCAATATTGGACTTAAAGATGACAAA-TACG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAAGAACG
*
1561865 CCGATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1561910 GGTACCACCA
Statistics
Matches: 279, Mismatches: 69, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
50 39 0.14
51 40 0.14
52 195 0.70
53 5 0.02
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (52 bp):
CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAGAACG
Found at i:1561907 original size:154 final size:154
Alignment explanation
Indices: 1561504--1561909 Score: 440
Period size: 155 Copynumber: 2.6 Consensus size: 154
1561494 GATAAAGGTA
* * ** * * * *
1561504 CCAATATGCTGATTCAGGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGAT
1 CCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAAAGAACGCCAATATGCTGAT
* * *** *
1561569 TCACGGTCAATGACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCTAACGA
66 TCAAGGCCAGCAACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGA
* ** *
1561634 CATTGGTTAAGGAATGTTACGGATG
131 CATTGGTTAAGGAACG-TACAAAAG
* ** * * *
1561659 CCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATATGCTGAT
1 CCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAAAGAACGCCAATATGCTGAT
* * * *
1561724 TCACGGTCAGCAACATTAGACTTGGAGATGAAAAGAATGCCAATGTGTTGATTCAAGGCCAACGA
66 TCAAGGCCAGCAACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGA
1561789 CATTGGTTAAGG-ACG-ACAAAAG
131 CATTGGTTAAGGAACGTACAAAAG
* * *
1561811 CGTCAATATGTTGATTCAAGGCCAGCAATATTGGACTTAAAGATGACAAA-TACGCCGATATGCT
1 C--CAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGA-AAAGAACGCCAATATGCT
* * * *
1561875 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
63 GATTCAAGGCCAGCAACATTAGACTTGAAGATGAA
1561910 GGTACCACCA
Statistics
Matches: 220, Mismatches: 28, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
152 5 0.02
154 78 0.35
155 137 0.62
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (154 bp):
CCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAAAGAACGCCAATATGCTGAT
TCAAGGCCAGCAACATTAGACTTGAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGA
CATTGGTTAAGGAACGTACAAAAG
Found at i:1561984 original size:28 final size:28
Alignment explanation
Indices: 1561925--1562494 Score: 568
Period size: 27 Copynumber: 20.4 Consensus size: 28
1561915 CACCAACTTG
**
1561925 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
1 TGTGGGCTTTTG-AA-GGTTGCCACTGACT
* * *
1561954 TGTGTGCTTTTGAAGGTTGCCATTGCCT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
1561982 TGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1562009 TGTGGGCTTCTGAAGGCTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
1562037 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
*
1562065 TGTGGGC-TTTGGAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1562092 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1562121 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
* ** *
1562149 TGTGGGCATCAG-AGGTTGCCCCTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1562176 TATGGGCTTTTGAAGGTTGCCACTGCCT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1562204 TGTGCGC-TTTGGAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1562231 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* * *
1562260 TGTGGGC-TTCGGAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
1562287 TGTGGGCTTTTGAAAAGATGCCACTGAGT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* * *
1562316 TGTGGGC-TTCGGAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
1562343 TATGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* ** *
1562372 TATGGGC-TTTGAAAATGTGCCACTAACT
1 TGTGGGCTTTTGAAGGT-TGCCACTGACT
* *
1562400 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* * * *
1562429 TATGGGC-TTCGGAGGTTGCCACTTACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1562456 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1562485 TGTGGGCTTT
1 TGTGGGCTTT
1562495 GAAAATGTGG
Statistics
Matches: 446, Mismatches: 76, Indels: 38
0.80 0.14 0.07
Matches are distributed among these distances:
26 3 0.01
27 155 0.35
28 149 0.33
29 136 0.30
30 3 0.01
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.32
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:1562067 original size:56 final size:56
Alignment explanation
Indices: 1561925--1562497 Score: 649
Period size: 56 Copynumber: 10.2 Consensus size: 56
1561915 CACCAACTTG
** * * * * *
1561925 TGTGGGCTTTTGAAAGGGTTG-CACCAACTTGTGTGCTTTTG-AAGGTTGCCATTGCCT
1 TGTGGGC-TTTG-AA-GGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * *
1561982 TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTCTG-AAGGCTGCCACTGACT
1 TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * *
1562037 TGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGC-TTTG-GAGGTTGCCACTGACT
1 TGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * *
1562092 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
1 TGTGGGC-TTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * * * * * *
1562149 TGTGGGC-ATCAGAGGTTGCCCCTGACTTATGGGCTTTTG-AAGGTTGCCACTGCCT
1 TGTGGGCTTTGA-AGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* *
1562204 TGTGCGCTTTGGAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * * *
1562260 TGTGGGCTTCGGAGGTTGCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGAGT
1 TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * * *
1562316 TGTGGGCTTCGGAGGTTGCCACTAACTTATGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* ** *
1562372 TATGGGCTTTGAAAATGTGCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAGGT-TGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
* * * *
1562429 TATGGGCTTCGGAGGTTGCCACTTACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1562485 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
1562498 AATGTGGGGC
Statistics
Matches: 454, Mismatches: 53, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
54 6 0.01
55 130 0.29
56 240 0.53
57 78 0.17
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.32
Consensus pattern (56 bp):
TGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
Found at i:1562164 original size:84 final size:84
Alignment explanation
Indices: 1561927--1562493 Score: 539
Period size: 84 Copynumber: 6.8 Consensus size: 84
1561917 CCAACTTGTG
** * * *
1561927 TGGGCTTTTGAAAGGGTTG-CACCAACTTGTGTGCTTTTG--AAGGTTGCCATTGCCTTGTGGGC
1 TGGGCTTTTG-AA-GGTTGCCACTGACTTGTGGGCTTTTGAAAAGG-TGCCACTGACTTGTGGGC
* *
1561989 TT-TGAAGGTTGCCACTGACTTG
63 TTCAG-AGGTTGCCACTGACTTA
* *
1562011 TGGGCTTCTGAAGGCTGCCACTGACTTGTGGGCTTTTG--AAGGTTGCCACTGACTTGTGGGCTT
1 TGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGG-TGCCACTGACTTGTGGGCTT
** *
1562074 TGGAGGTTGCCACTGACTTG
65 CAGAGGTTGCCACTGACTTA
* * *
1562094 TGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACTTGTGGGCAT
1 TGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGTGCCACTGACTTGTGGGCTT
*
1562158 CAGAGGTTGCCCCTGACTTA
65 CAGAGGTTGCCACTGACTTA
* * *
1562178 TGGGCTTTTGAAGGTTGCCACTGCCTTGTGCGC-TTTG--GAGGTTGCCACTGACTTGTGGGCTT
1 TGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGG-TGCCACTGACTTGTGGGC--
* * * * *
1562240 TTGAAAAGATGCCACTGACTTG
63 TTCAGAGGTTGCCACTGACTTA
* * * * *
1562262 TGGGC-TTCGGAGGTTGCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGAGTTGTGGGCTTC
1 TGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGTGCCACTGACTTGTGGGCTTC
* *
1562326 GGAGGTTGCCACTAACTTA
66 AGAGGTTGCCACTGACTTA
* * * * *
1562345 TGGGCTTTTGAAAAGATGCCACTGACTTATGGGC-TTTGAAAATGTGCCACTAACTTGTGGGCTT
1 TGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGTGCCACTGACTTGTGGGC--
* * * *
1562409 TTGAAAAGATGCCACTGACTTA
63 TTCAGAGGTTGCCACTGACTTA
* * * *
1562431 TGGGC-TTCGGAGGTTGCCACTTACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGTGCCACTGACTTGTGGGCTT
1562494 TGAAAATGTG
Statistics
Matches: 399, Mismatches: 68, Indels: 33
0.80 0.14 0.07
Matches are distributed among these distances:
81 3 0.01
82 22 0.06
83 139 0.35
84 145 0.36
85 67 0.17
86 23 0.06
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.32
Consensus pattern (84 bp):
TGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGTGCCACTGACTTGTGGGCTTC
AGAGGTTGCCACTGACTTA
Found at i:1563942 original size:29 final size:29
Alignment explanation
Indices: 1563910--1563991 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 29
1563900 CATCTGGACC
* *
1563910 CTTTTTGTTGTTTTTTTTTTTGTTTGTCT
1 CTTTTTGTTGTTTGTTTGTTTGTTTGTCT
*
1563939 CTTTTTTTTGTTTGTTTGTTTGTTTGT-T
1 CTTTTTGTTGTTTGTTTGTTTGTTTGTCT
* * *
1563967 -TTTATTTTTTTTTGTTTATTTGTTT
1 CTTT-TTGTTGTTTGTTTGTTTGTTT
1563992 TTTCTTGGCG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 3 0.06
28 20 0.43
29 24 0.51
ACGTcount: A:0.02, C:0.04, G:0.13, T:0.80
Consensus pattern (29 bp):
CTTTTTGTTGTTTGTTTGTTTGTTTGTCT
Found at i:1563958 original size:8 final size:8
Alignment explanation
Indices: 1563913--1563991 Score: 56
Period size: 8 Copynumber: 9.9 Consensus size: 8
1563903 CTGGACCCTT
1563913 TTTG-TTG
1 TTTGTTTG
* *
1563920 TTTTTTTT
1 TTTGTTTG
1563928 TTTGTTTG
1 TTTGTTTG
*
1563936 TCTCT-TTTT
1 T-T-TGTTTG
1563945 TTTGTTTG
1 TTTGTTTG
1563953 TTTGTTTG
1 TTTGTTTG
1563961 TTTGTTT-
1 TTTGTTTG
* *
1563968 TTATTTTTT
1 TT-TGTTTG
*
1563977 TTTGTTTA
1 TTTGTTTG
1563985 TTTGTTT
1 TTTGTTT
1563992 TTTCTTGGCG
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
7 6 0.11
8 43 0.75
9 7 0.12
10 1 0.02
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.81
Consensus pattern (8 bp):
TTTGTTTG
Found at i:1563976 original size:32 final size:33
Alignment explanation
Indices: 1563911--1563991 Score: 103
Period size: 32 Copynumber: 2.5 Consensus size: 33
1563901 ATCTGGACCC
* * *
1563911 TTTTTG-TTGTTTTTTTTTTTGTTTGTCTCTTT
1 TTTTTGTTTGTTTGTTTGTTTGTTTGTATCTTT
*
1563943 TTTTTGTTTGTTTGTTTGTTTGTTTTTAT-TTT
1 TTTTTGTTTGTTTGTTTGTTTGTTTGTATCTTT
*
1563975 TTTTTGTTTATTTGTTT
1 TTTTTGTTTGTTTGTTT
1563992 TTTCTTGGCG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 25 0.58
33 18 0.42
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.81
Consensus pattern (33 bp):
TTTTTGTTTGTTTGTTTGTTTGTTTGTATCTTT
Found at i:1574144 original size:13 final size:13
Alignment explanation
Indices: 1574126--1574150 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1574116 CATAAAGTGT
1574126 TGTATCGATACAA
1 TGTATCGATACAA
1574139 TGTATCGATACA
1 TGTATCGATACA
1574151 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1574148 original size:33 final size:33
Alignment explanation
Indices: 1574106--1574172 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1574096 TTCAACGATT
1574106 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1574139 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1574172 T
1 T
1574173 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1574231 original size:13 final size:13
Alignment explanation
Indices: 1574213--1574237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1574203 ATCACTTAAA
1574213 TGTATCGATACAT
1 TGTATCGATACAT
1574226 TGTATCGATACA
1 TGTATCGATACA
1574238 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1574285 original size:52 final size:52
Alignment explanation
Indices: 1574226--1574374 Score: 264
Period size: 52 Copynumber: 2.9 Consensus size: 52
1574216 ATCGATACAT
**
1574226 TGTATCGATACACTGA-TCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-ATTCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1574278 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1574330 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTT
1574375 TCATATTTCG
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
51 1 0.01
52 93 0.99
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (52 bp):
TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:1581587 original size:13 final size:13
Alignment explanation
Indices: 1581569--1581616 Score: 69
Period size: 13 Copynumber: 3.5 Consensus size: 13
1581559 TTTTCCACAA
1581569 AAAAAAAACAAAC
1 AAAAAAAACAAAC
1581582 AAAAAAAACAAAC
1 AAAAAAAACAAAC
*
1581595 AAAAAAAAAAAAAC
1 -AAAAAAAACAAAC
1581609 AAACAAAA
1 AAA-AAAA
1581617 GAAGGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 16 0.50
14 16 0.50
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:1581625 original size:18 final size:18
Alignment explanation
Indices: 1581567--1581616 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
1581557 TCTTTTCCAC
*
1581567 AAAAAAA-AAAC-AAACA
1 AAAAAAACAAACAAAAAA
1581583 AAAAAAACAAACAAAAAA
1 AAAAAAACAAACAAAAAA
1581601 AAAAAAACAAACAAAA
1 AAAAAAACAAACAAAA
1581617 GAAGGAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 7 0.23
17 4 0.13
18 20 0.65
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAAACAAACAAAAAA
Found at i:1582601 original size:31 final size:31
Alignment explanation
Indices: 1582563--1582796 Score: 142
Period size: 31 Copynumber: 7.6 Consensus size: 31
1582553 ATACCTTTTT
1582563 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
1582594 AAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
* *
1582624 AAAGTCCACGACTTAGTGGC-ATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TC
* * * * * * *
1582656 AAAGCCCACGAATCAATGGCATTTTGTCCT-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* *
1582686 AAAGTCCATGACTTC-GTGGCACCTTCTCTTCTC
1 AAAGTCCACGAC-TCAGTGGCA--ATCTCTTCTC
* * * * * * *
1582719 AAAGCCCACGACTCAATGGCATTTTGTCCTA
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* * *
1582750 AAAGTCCACAATTCAGTGGC-ATCCCTT-T-
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* *
1582778 TAAGTCCATGACTCAGTGG
1 AAAGTCCACGACTCAGTGG
1582797 GATCAAAGTC
Statistics
Matches: 156, Mismatches: 37, Indels: 23
0.72 0.17 0.11
Matches are distributed among these distances:
28 15 0.10
29 3 0.02
30 43 0.28
31 47 0.30
32 32 0.21
33 16 0.10
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:1582626 original size:30 final size:29
Alignment explanation
Indices: 1582563--1582771 Score: 170
Period size: 31 Copynumber: 6.8 Consensus size: 29
1582553 ATACCTTTTT
*
1582563 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGC-AT-TTTTCTC
1582594 AAAGTCCACGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATTTT-TCTC
*
1582624 AAAGTCCACGACTTAGTGGCATCCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAT--TTTTC-TC
* * *
1582656 AAAGCCCACGAATCAATGGCATTTTGTC-C
1 AAAGTCCACGACTCAGTGGCATTTT-TCTC
*
1582685 TAAAGTCCATGACTTC-GTGGCACCTTCTCTTCTC
1 -AAAGTCCACGAC-TCAGTGGCA--TT-T-TTCTC
* * *
1582719 AAAGCCCACGACTCAATGGCATTTTGTCCTA
1 AAAGTCCACGACTCAGTGGCATTTT-T-CTC
* *
1582750 AAAGTCCACAATTCAGTGGCAT
1 AAAGTCCACGACTCAGTGGCAT
1582772 CCCTTTTAAG
Statistics
Matches: 145, Mismatches: 18, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
29 4 0.03
30 46 0.32
31 48 0.33
32 27 0.19
33 18 0.12
34 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (29 bp):
AAAGTCCACGACTCAGTGGCATTTTTCTC
Found at i:1582679 original size:62 final size:62
Alignment explanation
Indices: 1582563--1582778 Score: 244
Period size: 62 Copynumber: 3.5 Consensus size: 62
1582553 ATACCTTTTT
* * * *
1582563 AAAGTCCACGACTCAGTGGCAAT-CTCTTC-TCAAAGTCCACGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTTAGTGGC-ATCCTTTTCTTCAAAGCCCACGACTCAATGGCATTTTGTCTC
*
1582624 AAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGAATCAATGGCATTTTGTC-C
1 AAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGACTCAATGGCATTTTGTCTC
* * *
1582685 TAAAGTCCATGACTTCGTGGCA-CCTTCTCTTCTCAAAGCCCACGACTCAATGGCATTTTGTCCT
1 -AAAGTCCACGACTTAGTGGCATCCTTTTC-T-TCAAAGCCCACGACTCAATGGCATTTTGT-CT
*
1582749 A
62 C
*
1582750 AAAGTCCAC-AATTCAGTGGCATCCCTTTT
1 AAAGTCCACGACTT-AGTGGCAT-CCTTTT
1582779 AAGTCCATGA
Statistics
Matches: 131, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
60 2 0.02
61 31 0.24
62 47 0.36
63 31 0.24
64 15 0.11
66 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (62 bp):
AAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGCCCACGACTCAATGGCATTTTGTCTC
Found at i:1582918 original size:36 final size:34
Alignment explanation
Indices: 1582801--1583554 Score: 491
Period size: 27 Copynumber: 23.8 Consensus size: 34
1582791 CAGTGGGATC
* *
1582801 AAAGTCCACGACTCCGTGGCACCTTTTT-CTTTC
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
1582834 AAAGTCCACAACTCCGTGGCACC----TCCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1582864 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* *
1582901 AAAGTCCACGATTCCGTGGCACC---TT-CTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1582931 CAAAGCCCACAACTCCGTGGCA-C-----CCTTTT
1 -AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1582960 -AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCT-TTT
1582994 -AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1583021 -AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCT-TTT
1583055 -AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1583082 -AAGCCCACAACTCCGTGGCACCTTTCTCCTTCT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
1583115 -AGGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* *
1583150 AAAGTCCACGATTCCGTGGCACC---TT-CTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1583180 CAAAGCCCACAACTCCGTGGCA-C-----CCTTTT
1 -AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1583209 -AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCT-TTT
*
1583243 -CAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1583270 -AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCT-TTT
1583304 -AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1583331 -AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCT-TTT
1583365 -AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
1583392 -AAG-CGCACAACTCCGTGGCACCTTTCTCCTTCT
1 AAAGTC-CACAACTCCGTGGCACCTTTTTCCTTTT
* * *
1583425 -AGGCCCATAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
*
1583460 CAAAGCCCACAACTCCGTGGCACCTTTTT-CTTTT
1 -AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
1583494 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* *
1583530 -AAGTCCACAACTTCGTGGCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTTT
1583555 CTCCCTTCCC
Statistics
Matches: 589, Mismatches: 61, Indels: 141
0.74 0.08 0.18
Matches are distributed among these distances:
26 1 0.00
27 148 0.25
28 12 0.02
29 11 0.02
30 16 0.03
31 57 0.10
32 5 0.01
33 101 0.17
34 135 0.23
35 30 0.05
36 48 0.08
37 25 0.04
ACGTcount: A:0.20, C:0.36, G:0.14, T:0.31
Consensus pattern (34 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:1582921 original size:67 final size:64
Alignment explanation
Indices: 1582799--1583549 Score: 467
Period size: 61 Copynumber: 11.9 Consensus size: 64
1582789 CTCAGTGGGA
* * * * * *
1582799 TCAAAGTCCACGACTCCGTGGCACCTTTT-TCTTTCAAAGTCCACAACTCCGTGGCACCTCCTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCCCTTT-TAAGCCCACAACTCCGTGGCACCTTCTTT
* * *
1582863 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGATTCCGTGGCACCTTCT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTCCCTTTT-AAGCCCACAACTCCGTGGCACCTTCT
1582928 TT
63 TT
1582930 TCAAAGCCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCCGTGGCA-CTT-TTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTCTTT
*
1582986 TCATCTTTAAGTCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCCGTGGCA-CTT
1 TCA-----AAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTT
1583044 -TTT
61 CTTT
*
1583047 TCATCTTTAAGTCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCCGTGGCACCTT
1 TCA-----AAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACC-T
*
1583106 TCTCCT
60 TCT-TT
* * * * *
1583112 TCTAGGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGATTCCGTGGCACCTTCT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTCCCTTTT-AAGCCCACAACTCCGTGGCACCTTCT
1583177 TT
63 TT
1583179 TCAAAGCCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCCGTGGCA-CTT-TTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTCTTT
* *
1583235 TCATCTTTCAGTCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCCGTGGCA-CTT
1 TCA-----AAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTT
1583293 -TTT
61 CTTT
*
1583296 TCATCTTTAAGTCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCCGTGGCA-CTT
1 TCA-----AAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTT
1583354 -TTT
61 CTTT
* *
1583357 TCATCTTTAAGTCCACAACTCCGTGGCA------CCCTTTTAAGCGCACAACTCCGTGGCACCTT
1 TCA-----AAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACC-T
*
1583416 TCTCCT
60 TCT-TT
* * *
1583422 TCTAGGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTCCCTTTT--AAGCCCACAACTCCGTGGCACC---
1583487 TTCTTT
59 TTCTTT
* *
1583493 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTTCGTGGCA
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTCCCTTTTAAGCCCACAACTCCGTGGCA
1583550 TCTTTCTCCC
Statistics
Matches: 604, Mismatches: 40, Indels: 82
0.83 0.06 0.11
Matches are distributed among these distances:
56 12 0.02
57 6 0.01
58 34 0.06
59 14 0.02
60 35 0.06
61 272 0.45
62 2 0.00
63 4 0.01
64 24 0.04
65 7 0.01
66 4 0.01
67 74 0.12
68 36 0.06
69 19 0.03
70 54 0.09
71 2 0.00
72 5 0.01
ACGTcount: A:0.20, C:0.36, G:0.14, T:0.30
Consensus pattern (64 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTCCCTTTTAAGCCCACAACTCCGTGGCACCTTCTTT
Found at i:1583007 original size:61 final size:61
Alignment explanation
Indices: 1582937--1583521 Score: 715
Period size: 61 Copynumber: 9.4 Consensus size: 61
1582927 TTTTCAAAGC
1582937 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1582998 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
* * * *
1583059 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTC--CTTCTAGGC
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTT-TAAGT
* * *
1583119 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGATTCCGTGGCACCTTCTTTTCA--
1 CCACAACTCCGTGGCA--------CCCTTTT-AAGCCCACAACTCCGTGGCA-CTT-TTTTCATC
*
1583182 ---AAGC
55 TTTAAGT
*
1583186 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTCAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1583247 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1583308 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
* * * * *
1583369 CCACAACTCCGTGGCACCCTTTTAAGCGCACAACTCCGTGGCACCTTTCTC--CTTCTAGGC
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTT-TAAGT
* *
1583429 CCATAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC-T-T
1 CCACAACTCCGTGGCA--------CCCTTTT--AAGCCCACAACTCCGTGGCACTTTTTTCATCT
*
1583492 TTAAAGC
56 TT-AAGT
*
1583499 CCACAACTCCGTGGCACTCTTTT
1 CCACAACTCCGTGGCACCCTTTT
1583522 TCCCTTTTAA
Statistics
Matches: 466, Mismatches: 27, Indels: 61
0.84 0.05 0.11
Matches are distributed among these distances:
56 6 0.01
57 3 0.01
58 17 0.04
59 13 0.03
60 37 0.08
61 281 0.60
62 6 0.01
67 19 0.04
68 14 0.03
69 18 0.04
70 48 0.10
71 4 0.01
ACGTcount: A:0.20, C:0.36, G:0.14, T:0.30
Consensus pattern (61 bp):
CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
Found at i:1583137 original size:249 final size:249
Alignment explanation
Indices: 1582839--1583391 Score: 986
Period size: 249 Copynumber: 2.2 Consensus size: 249
1582829 CTTTCAAAGT
* * *
1582839 CCACAACTCCGTGGCACC-TCCT-TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
1 CCACAACTCCGTGGCACCTTTCTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
1582902 AAGTCCACGATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCA
66 AAGTCCACGATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCA
1582967 CAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAAC
131 CAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAAC
1583032 TCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGC
196 TCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGC
*
1583086 CCACAACTCCGTGGCACCTTTCTCCTTCTAGGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
1 CCACAACTCCGTGGCACCTTTCTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
1583151 AAGTCCACGATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCA
66 AAGTCCACGATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCA
*
1583216 CAACTCCGTGGCACTTTTTTCATCTTTCAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAAC
131 CAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAAC
1583281 TCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGC
196 TCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGC
* * * *
1583335 CCACAACTCCGTGGCACTTTTTTCATCTT-TAAGTCCACAACTCCGTGGCACCCTTTT
1 CCACAACTCCGTGGCACCTTTCTC--CTTCTAAGCCCACAACTCCGTGGCACTCTTTT
1583392 AAGCGCACAA
Statistics
Matches: 292, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
247 18 0.06
248 3 0.01
249 243 0.83
250 25 0.09
251 3 0.01
ACGTcount: A:0.20, C:0.36, G:0.13, T:0.30
Consensus pattern (249 bp):
CCACAACTCCGTGGCACCTTTCTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
AAGTCCACGATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCA
CAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAAC
TCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGC
Found at i:1583295 original size:310 final size:308
Alignment explanation
Indices: 1582806--1583521 Score: 1104
Period size: 310 Copynumber: 2.3 Consensus size: 308
1582796 GGATCAAAGT
* * *
1582806 CCACGACTCCGTGGCAC-CTTTTT--CTTTCAAAGTCCACAACTCCGTGGCACCTCCTTTTCAAA
1 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAA
* * *
1582868 GCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGATTCCGTGGCACCTTCTTTTCA
66 GCCCACAACTCCGTGGCA--------CCCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTTCA
1582933 AAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
123 AAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGT
1582998 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCAC
188 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCAC
1583063 AACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTCTAGGC
253 AACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTCTAGGC
* *
1583119 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGATTCCGTGGCACCTTCTTTTCAAA
1 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAA
*
1583184 GCCCACAACTCCGTGGCACCCTTTT-AAGCCCACAACTCCGTGGCA-CTT-TTTTCATCTTTCAG
66 GCCCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTTCA-----AAG
*
1583246 TCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCA
126 CCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCA
1583311 CAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAAC
191 CAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAAC
*
1583376 TCCGTGGCACCCTTTTAAGCGCACAACTCCGTGGCACCTTTCTCCTTCTAGGC
256 TCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTCTAGGC
* *
1583429 CCATAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 CCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGTCCACAACTCCGTGGCACC---TTCTTTT
*
1583494 -AAAGCCCACAACTCCGTGGCACTCTTTT
62 CAAAGCCCACAACTCCGTGGCACCCTTTT
1583522 TCCCTTTTAA
Statistics
Matches: 375, Mismatches: 16, Indels: 24
0.90 0.04 0.06
Matches are distributed among these distances:
305 6 0.02
306 3 0.01
307 17 0.05
308 7 0.02
310 213 0.57
311 20 0.05
313 43 0.11
314 13 0.03
316 53 0.14
ACGTcount: A:0.20, C:0.36, G:0.14, T:0.30
Consensus pattern (308 bp):
CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAA
GCCCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCAC
AACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACT
CCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGT
GGCACCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTCTAGGC
Found at i:1583510 original size:70 final size:68
Alignment explanation
Indices: 1583385--1583558 Score: 242
Period size: 70 Copynumber: 2.5 Consensus size: 68
1583375 CTCCGTGGCA
* * *
1583385 CCCTTTTAAGCGCACAACTCCGTGGCACCTTTCTCCTTCTAGGCCCATAACTCCGTGGCACTCTT
1 CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTCTAAGCCCACAACTCCGTGGCACTCTT
1583450 TTT
66 TTT
* *
1583453 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTT-TTCTTTTAAAGCCCACAACTCCGTGGCACT
1 CCCTTTT--AAGCCCACAACTCCGTGGCACCTTTCTCCTTCT-AAGCCCACAACTCCGTGGCACT
1583517 CTTTTT
63 CTTTTT
* * *
1583523 CCCTTTTAAGTCCACAACTTCGTGGCATCTTTCTCC
1 CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCC
1583559 CTTCCCAAAG
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
68 29 0.31
69 7 0.08
70 57 0.61
ACGTcount: A:0.18, C:0.36, G:0.13, T:0.33
Consensus pattern (68 bp):
CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTCTAAGCCCACAACTCCGTGGCACTCTT
TTT
Found at i:1583601 original size:103 final size:102
Alignment explanation
Indices: 1583270--1583606 Score: 253
Period size: 103 Copynumber: 3.4 Consensus size: 102
1583260 GCACCCTTTT
* * *
1583270 AAGCCCACAACTCCGTGGC-ACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACC---CT--T
1 AAGCCCACAACTCCGTGGCAAC-TTCTTC-TC-TAAAGCCCACAACTCCGTGGCACCTTTCTCCT
* * *
1583329 T-TAAGCCCACAACTCCGTGGCACT-TTTTTCATCTT---T
63 TCTAAGCCCACAACTCCGTGGCACTCTTTCTC-CCTTCCCA
* * *
1583365 AAGTCCACAACTCCGTGGC-AC-CCTT-T-T-AAGCGCACAACTCCGTGGCACCTTTCTCCTTCT
1 AAGCCCACAACTCCGTGGCAACTTCTTCTCTAAAGCCCACAACTCCGTGGCACCTTTCTCCTTCT
* * * **
1583425 AGGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTCA
66 AAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCCCA
* * * *
1583462 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 AAGCCCACAACTCCGTGGCAACTTCTTC-TCTAAAGCCCACAACTCCGTGGCAC-CTTTCT-CCT
* * *
1583527 TTTAAGTCCACAACTTCGTGGCA-TCTTTCTCCCTTCCCA
63 TCTAAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCCCA
* *
1583566 AAGCCCACACAAGTCGGTGGCAAC-TCTTC-CTAAAGCCCACA
1 AAG-CC-CACAACTCCGTGGCAACTTCTTCTCTAAAGCCCACA
1583607 CAAGTCGGTG
Statistics
Matches: 194, Mismatches: 28, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
88 20 0.10
89 1 0.01
91 3 0.02
93 4 0.02
94 24 0.12
95 26 0.13
97 18 0.09
98 1 0.01
99 2 0.01
101 1 0.01
102 1 0.01
103 31 0.16
104 21 0.11
105 27 0.14
106 14 0.07
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (102 bp):
AAGCCCACAACTCCGTGGCAACTTCTTCTCTAAAGCCCACAACTCCGTGGCACCTTTCTCCTTCT
AAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCCCA
Found at i:1583639 original size:33 final size:32
Alignment explanation
Indices: 1583563--1583700 Score: 201
Period size: 33 Copynumber: 4.3 Consensus size: 32
1583553 TTCTCCCTTC
1583563 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
1583594 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
*
1583628 CCAAAGCCCACACAAGTCGGTGGCAACCACTCT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCT-T
*
1583661 CTAAAGCCCACACAAGTCGGTGGCAACC-CTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
*
1583692 -CTAAGCCCA
1 CCAAAGCCCA
1583701 ATATAGCTGG
Statistics
Matches: 99, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
30 7 0.07
31 3 0.03
32 28 0.28
33 55 0.56
34 6 0.06
ACGTcount: A:0.29, C:0.37, G:0.18, T:0.16
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:1583677 original size:66 final size:66
Alignment explanation
Indices: 1583563--1583693 Score: 221
Period size: 65 Copynumber: 2.0 Consensus size: 66
1583553 TTCTCCCTTC
*
1583563 CCAAAGCCCACACAAGTCGGTGGCAACTCTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTTCT
1 CCAAAGCCCACACAAGTCGGTGGCAACACTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1583627 T
66 T
1583628 CCAAAGCCCACACAAGTCGGTGGCAACCAC-TCTCTAAAGCCCACACAAGTCGGTGGCAACCCTT
1 CCAAAGCCCACACAAGTCGGTGGCAA-CACTTC-CTAAAGCCCACACAAGTCGGTGGCAACCCTT
1583692 CT
64 CT
1583694 AAGCCCAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
65 28 0.45
66 28 0.45
67 6 0.10
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (66 bp):
CCAAAGCCCACACAAGTCGGTGGCAACACTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
T
Found at i:1583757 original size:49 final size:49
Alignment explanation
Indices: 1583693--1584357 Score: 803
Period size: 49 Copynumber: 13.9 Consensus size: 49
1583683 GCAACCCTTC
* * *
1583693 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * *
1583742 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
1583791 TAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
1583840 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
1583889 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
1583937 TAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * *
1583980 TAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
1584029 TAAGTCCAACGTAGCTGGCCTTGAATCAGCATATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
1584072 TAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
** * *
1584121 TAAAACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
1584170 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
1584218 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG---C---ATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * *
1584261 TCAGTCCAATATAGCTAGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTT--ATCTT
* * *
1584313 TAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
1584358 TTCTCATCTT
Statistics
Matches: 537, Mismatches: 57, Indels: 41
0.85 0.09 0.06
Matches are distributed among these distances:
43 113 0.21
44 2 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 88 0.16
49 288 0.54
52 41 0.08
53 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
Found at i:1583867 original size:98 final size:97
Alignment explanation
Indices: 1583693--1584414 Score: 893
Period size: 98 Copynumber: 7.5 Consensus size: 97
1583683 GCAACCCTTC
*
1583693 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
1583758 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGAATCAGCACATTGGCACCTTCA-CTT
* *
1583791 TAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
1583856 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGAATCAGCACATTGGCACCTTCA-CTT
* * * * *
1583889 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAACGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1583953 GGCCTTGAATCAGCACATTGGCA----C-CTT
66 GGCCTTGAATCAGCACATTGGCACCTTCACTT
* * *
1583980 TAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTACCTTTAAGTCCAACGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
1584045 GGCCTTGAATCAGCATATTGGCA----C-CTT
66 GGCCTTGAATCAGCACATTGGCACCTTCACTT
* **
1584072 TAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTATCTTTAAAACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
1584137 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGAATCAGCACATTGGCACCTTCA-CTT
* * * *
1584170 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1584234 GGCCTTGAATCAGCACATTGGCA---T--CTT
66 GGCCTTGAATCAGCACATTGGCACCTTCACTT
* * * *
1584261 TCAGTCCAATATAGCTAGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAATGTA
* *
1584326 GCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
63 GCTGGCCTTGAATCAGCACATTGGCA-CC----T-TCA-CTT
* * * * * *
1584368 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
1584415 ACTTTTCTCA
Statistics
Matches: 550, Mismatches: 51, Indels: 40
0.86 0.08 0.06
Matches are distributed among these distances:
91 80 0.15
92 130 0.24
93 2 0.00
94 1 0.00
95 40 0.07
96 1 0.00
97 82 0.15
98 172 0.31
104 4 0.01
106 3 0.01
107 35 0.06
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (97 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTCACTT
Found at i:1583995 original size:43 final size:43
Alignment explanation
Indices: 1583886--1584304 Score: 424
Period size: 43 Copynumber: 9.1 Consensus size: 43
1583876 GCACCTTCAT
1583886 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
1583934 CTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1583977 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG---C---AC
* *
1584026 CTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1584069 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C
** *
1584113 TTTATCTTTAAAACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
1 -----CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
1584165 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
1584215 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
1584258 CTTTCAGTCCAATATAGCTAGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1584301 CTTT
1 CTTT
1584305 TCCATCTTTA
Statistics
Matches: 323, Mismatches: 28, Indels: 45
0.82 0.07 0.11
Matches are distributed among these distances:
43 123 0.38
44 1 0.00
46 2 0.01
48 79 0.24
49 114 0.35
50 1 0.00
52 1 0.00
54 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1584071 original size:21 final size:21
Alignment explanation
Indices: 1584047--1584114 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
1584037 ACGTAGCTGG
1584047 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* ** *
1584068 CCTTTAAGTCCAATATAGCTGG--
1 CCTTGAA-T-CAGCATA-TTGGCA
*
1584090 CTTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
1584111 CCTT
1 CCTT
1584115 TATCTTTAAA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 3 0.09
20 5 0.16
21 10 0.31
22 6 0.19
23 5 0.16
24 3 0.09
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:1584115 original size:22 final size:22
Alignment explanation
Indices: 1584049--1584115 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
1584039 GTAGCTGGCC
1584049 TTGAATCAGCATATTGGCACCT
1 TTGAATCAGCATATTGGCACCT
* **
1584071 TT-AAGTC--CA-ATATAGCTGGCT
1 TTGAA-TCAGCATAT-TGGC-ACCT
1584092 TTGAATCAGCATATTGGCACCT
1 TTGAATCAGCATATTGGCACCT
1584114 TT
1 TT
1584116 ATCTTTAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 14
0.62 0.12 0.27
Matches are distributed among these distances:
19 2 0.06
20 5 0.16
21 8 0.25
22 10 0.31
23 5 0.16
24 2 0.06
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (22 bp):
TTGAATCAGCATATTGGCACCT
Found at i:1584207 original size:281 final size:281
Alignment explanation
Indices: 1583688--1584357 Score: 1088
Period size: 281 Copynumber: 2.3 Consensus size: 281
1583678 CGGTGGCAAC
*
1583688 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
* *
1583753 TAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGTTGGCCTTGAATC
65 TAGCTGGCCTTGAATCAGCACATTGGCACC-T-----TTAAGTCCAATATAGCTGGCCTTGAATC
*
1583818 AGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
124 AGCATATTGGCACCTTTATCTTTAAAACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
1583883 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAACG
189 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAACG
1583948 TAGCTGGCCTTGAATCAGCACATTGGCA
254 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
1583976 CCTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTACCTTTAAGTCCAACGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* *
1584041 AGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1584106 TGGCACCTTTATCTTTAAAACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTT
131 TGGCACCTTTATCTTTAAAACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTT
*
1584171 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGG
196 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAACGTAGCTGG
1584236 CCTTGAATCAGCACATTGGCA
261 CCTTGAATCAGCACATTGGCA
* * * * *
1584257 TCTTTCAGTCCAATATAGCTAGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAA
* *
1584322 TGTAGCTAGCCTTGAATCAGCACATTGACATCCTTT
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
1584358 TTCTCATCTT
Statistics
Matches: 357, Mismatches: 21, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
281 222 0.62
282 3 0.01
284 38 0.11
285 5 0.01
286 1 0.00
287 84 0.24
288 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (281 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
TGGCACCTTTATCTTTAAAACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTT
AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAACGTAGCTGG
CCTTGAATCAGCACATTGGCA
Found at i:1584333 original size:52 final size:55
Alignment explanation
Indices: 1584255--1584379 Score: 166
Period size: 52 Copynumber: 2.3 Consensus size: 55
1584245 AGCACATTGG
* * *
1584255 CATCTTTCAGTCCAATATAGCTAGCCTTGAATCAGCATATCGGCA-CC-TTTTC-
1 CATCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATCGACATCCTTTTTCT
* * *
1584307 CATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCT
1 CATCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATCGACATCCTTTTTCT
*
1584362 CATCTTTAAGCCCAATAT
1 CATCTTTAAGTCCAATAT
1584380 CGTTGGCCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
52 39 0.64
53 2 0.03
54 5 0.08
55 15 0.25
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (55 bp):
CATCTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATCGACATCCTTTTTCT
Found at i:1584469 original size:67 final size:68
Alignment explanation
Indices: 1584361--1584487 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
1584351 ATCCTTTTTC
* * *
1584361 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
1584425 TCT
66 TCT
* * * *
1584428 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCATCTTT
1584488 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:1585317 original size:13 final size:13
Alignment explanation
Indices: 1585299--1585323 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1585289 CATAAAGTGT
1585299 TGTATCGATACAA
1 TGTATCGATACAA
1585312 TGTATCGATACA
1 TGTATCGATACA
1585324 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1585321 original size:33 final size:33
Alignment explanation
Indices: 1585279--1585345 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1585269 TTCAATGATT
1585279 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1585312 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1585345 T
1 T
1585346 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1585404 original size:13 final size:13
Alignment explanation
Indices: 1585386--1585410 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1585376 ATCACTTAAA
1585386 TGTATCGATACAT
1 TGTATCGATACAT
1585399 TGTATCGATACA
1 TGTATCGATACA
1585411 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1593242 original size:52 final size:52
Alignment explanation
Indices: 1593156--1593528 Score: 274
Period size: 52 Copynumber: 7.2 Consensus size: 52
1593146 TGATATTGGG
** * * *
1593156 CTTAAAGATGAAAAGAATGTTAATGTGCTAATTCACGGTCAGCGACATTAGA
1 CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
* * * *
1593208 CTTGAAGATAAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACATT-G-
1 CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
* * ** * * * * * * *
1593258 GTTAAGGAATGTTATGGATGCCAATATGCTGATTCAAGGCCAGTGATATTGGG
1 CTTAAAG-ATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
* * *
1593311 CTTAAAGATGAAAAGAATGTCAATGTGCTGATTCACGGTCAGCGACATTAGA
1 CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
*
1593363 CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATT-G-
1 CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
* * * ** * * * * * * * *
1593413 GTTAAGGACGACAAAG-GCGTCAATATGCTAAGTCAAGGCTAGCAATATTGGA
1 CTTAAAGATGA-AAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
* * ** * *
1593465 CTTAAAGATAACAAAGACAT--CGATACGCTGATTCAAGGCCAGCGATATTTGA
1 CTTAAAGATGA-AAAGA-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
1593517 CTTAAAGATGAA
1 CTTAAAGATGAA
1593529 GGTATCACCA
Statistics
Matches: 246, Mismatches: 67, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
50 35 0.14
51 40 0.16
52 166 0.67
53 5 0.02
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (52 bp):
CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGA
Found at i:1593341 original size:103 final size:104
Alignment explanation
Indices: 1593156--1593403 Score: 257
Period size: 103 Copynumber: 2.4 Consensus size: 104
1593146 TGATATTGGG
** * * * * * * * * *
1593156 CTTAAAGATGAAAAGAATGTTAATGTGCTAATTCACGGTCAGCGACATTAGACTTGAAGATAAAA
1 CTTAAAGATGAAAAGAATGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGATAAAA
1593221 AAAATGCCAATGTGCTGATTCAAGGCCAACGACATT-G-
66 AAAATGCCAATGTGCTGATTCAAGGCCAACGACATTAGA
* * ** * * *
1593258 GTTAAGGAATGTTATGGATGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGATGAA
1 CTTAAAG-ATGAAAAGAATGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGATAAA
* * * * *
1593323 AAGAATGTCAATGTGCTGATTCACGGTCAGCGACATTAGA
65 AAAAATGCCAATGTGCTGATTCAAGGCCAACGACATTAGA
*
1593363 CTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCA
1 CTTAAAGATGAAAAGAATGCCAATATGCTGATTCAAGGCCA
1593404 ACGACATTGG
Statistics
Matches: 113, Mismatches: 30, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
102 5 0.04
103 73 0.65
104 30 0.27
105 5 0.04
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.25
Consensus pattern (104 bp):
CTTAAAGATGAAAAGAATGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGATAAAA
AAAATGCCAATGTGCTGATTCAAGGCCAACGACATTAGA
Found at i:1593407 original size:155 final size:155
Alignment explanation
Indices: 1593125--1593420 Score: 522
Period size: 155 Copynumber: 1.9 Consensus size: 155
1593115 TAAAAGTGCA
* *
1593125 AATATGCTGATTCGGGACCAGTGATATTGGGCTTAAAGATGAAAAGAATGTTAATGTGCTAATTC
1 AATATGCTGATTCAGGACCAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTAATTC
*
1593190 ACGGTCAGCGACATTAGACTTGAAGATAAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACA
66 ACGGTCAGCGACATTAGACTTAAAGATAAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACA
1593255 TTGGTTAAGGAATGTTATGGATGCC
131 TTGGTTAAGGAATGTTATGGATGCC
*
1593280 AATATGCTGATTCAAGG-CCAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGATT
1 AATATGCTGATTC-AGGACCAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTAATT
* *
1593344 CACGGTCAGCGACATTAGACTTAAAGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGAC
65 CACGGTCAGCGACATTAGACTTAAAGATAAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGAC
1593409 ATTGGTTAAGGA
130 ATTGGTTAAGGA
1593421 CGACAAAGGC
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
155 132 0.99
156 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.26
Consensus pattern (155 bp):
AATATGCTGATTCAGGACCAGTGATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTAATTC
ACGGTCAGCGACATTAGACTTAAAGATAAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACA
TTGGTTAAGGAATGTTATGGATGCC
Found at i:1593481 original size:155 final size:155
Alignment explanation
Indices: 1593148--1593528 Score: 482
Period size: 155 Copynumber: 2.5 Consensus size: 155
1593138 GGGACCAGTG
* * *
1593148 ATATTGGGCTTAAAGATGAAAAGAATGTTAATGTGCTAATTCACGGTCAGCGACATTAGACTTGA
1 ATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTTAA
* * ** * *
1593213 AGATAAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTTAAGGAATGTTATGGATG
66 AGATGAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTTAAGGAACGCAAAGGACG
* * **
1593278 CCAATATGCTGATTCAAGGCCAGTG
131 CCAATATGCTAAGTCAAGGCCAGCA
1593303 ATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTTAA
1 ATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTTAA
*
1593368 AGATGAAAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTTAAGG-ACGACAAAGG-C
66 AGATGAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTTAAGGAACG-CAAAGGAC
* *
1593431 GTCAATATGCTAAGTCAAGGCTAGCA
130 GCCAATATGCTAAGTCAAGGCCAGCA
* * * ** * * * *
1593457 ATATTGGACTTAAAGATAACAAAGACA--TCGATACGCTGATTCAAGGCCAGCGATATTTGACTT
1 ATATTGGGCTTAAAGATGA-AAAGA-ATGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTT
1593520 AAAGATGAA
64 AAAGATGAA
1593529 GGTATCACCA
Statistics
Matches: 198, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
154 77 0.39
155 120 0.61
156 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (155 bp):
ATATTGGGCTTAAAGATGAAAAGAATGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTTAA
AGATGAAAAAAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTTAAGGAACGCAAAGGACG
CCAATATGCTAAGTCAAGGCCAGCA
Found at i:1593631 original size:56 final size:55
Alignment explanation
Indices: 1593581--1593826 Score: 222
Period size: 56 Copynumber: 4.4 Consensus size: 55
1593571 CTTGTGTGTT
* * *
1593581 TTTTTAAGGTTGCCACTGCCTTGTGGGGTTTGAAGGTTACCACTGACTTGTGGGC
1 TTTTAAAGGTTGCCACTGACTTGTGGGCTTTGAAGGTTACCACTGACTTGTGGGC
* * * * *
1593636 TTTAAAAAGATGCCACTGACTTGTGGGCTTCTGAAGGTTACCACTAACTTATGGGC
1 TTTTAAAGGTTGCCACTGACTTGTGGGCTT-TGAAGGTTACCACTGACTTGTGGGC
* * ** * **
1593692 TTTTGAAGGTTACCACTGACTTGTGAACTTTGAAAGTTGTCACTGACTTGTGGGC
1 TTTTAAAGGTTGCCACTGACTTGTGGGCTTTGAAGGTTACCACTGACTTGTGGGC
*** * * * * ** * *
1593747 TTTTGAAAAAATGTCACTTACTTGTGGGTTTTAAAAATTGCCACTGACTTGTGGAC
1 TTTT-AAAGGTTGCCACTGACTTGTGGGCTTTGAAGGTTACCACTGACTTGTGGGC
* *
1593803 TTTTGAAGGTTGCCACTGCCTTGT
1 TTTTAAAGGTTGCCACTGACTTGT
1593827 TCACTTGCAT
Statistics
Matches: 148, Mismatches: 41, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
55 61 0.41
56 87 0.59
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (55 bp):
TTTTAAAGGTTGCCACTGACTTGTGGGCTTTGAAGGTTACCACTGACTTGTGGGC
Found at i:1593655 original size:28 final size:28
Alignment explanation
Indices: 1593589--1593826 Score: 162
Period size: 28 Copynumber: 8.6 Consensus size: 28
1593579 TTTTTTTAAG
* * * *
1593589 GTTGCCACTGCCTTGTGGGGTTT-GAAG
1 GTTGCCACTGACTTGTGGGCTTTAAAAA
*
1593616 GTTACCACTGACTTGTGGGCTTTAAAAA
1 GTTGCCACTGACTTGTGGGCTTTAAAAA
* * *
1593644 GATGCCACTGACTTGTGGGCTTCT-GAAG
1 GTTGCCACTGACTTGTGGGCTT-TAAAAA
* * * ** *
1593672 GTTACCACTAACTTATGGGCTTTTGAAG
1 GTTGCCACTGACTTGTGGGCTTTAAAAA
* ** *
1593700 GTTACCACTGACTTGTGAACTTT-GAAA
1 GTTGCCACTGACTTGTGGGCTTTAAAAA
*
1593727 GTTGTCACTGACTTGTGGGCTTTTGAAAAA
1 GTTGCCACTGACTTGTGGGC-TTT-AAAAA
* * * *
1593757 -ATGTCACTTACTTGTGGGTTTTAAAAA
1 GTTGCCACTGACTTGTGGGCTTTAAAAA
* ** *
1593784 -TTGCCACTGACTTGTGGACTTTTGAAG
1 GTTGCCACTGACTTGTGGGCTTTAAAAA
*
1593811 GTTGCCACTGCCTTGT
1 GTTGCCACTGACTTGT
1593827 TCACTTGCAT
Statistics
Matches: 169, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
27 64 0.38
28 85 0.50
29 17 0.10
30 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (28 bp):
GTTGCCACTGACTTGTGGGCTTTAAAAA
Found at i:1593715 original size:111 final size:111
Alignment explanation
Indices: 1593581--1593826 Score: 289
Period size: 111 Copynumber: 2.2 Consensus size: 111
1593571 CTTGTGTGTT
* *** *
1593581 TTTTTAAGGTTGCCACTGCCTTGTGGGGTTTGAAGGTTACCACTGACTTGTGGGC-TTT-AAAAA
1 TTTTGAAGGTTGCCACTGCCTTGTGAACTTTGAAAGTTACCACTGACTTGTGGGCTTTTGAAAAA
* ** *
1593644 GATGCCACTGACTTGTGGGCTTCTGAAGGTTACCACTAACTTATGGGC
66 -ATGCCACTGACTTGTGGG-TTCTAAAAATTACCACTAACTTATGGAC
* * **
1593692 TTTTGAAGGTTACCACTGACTTGTGAACTTTGAAAGTTGTCACTGACTTGTGGGCTTTTGAAAAA
1 TTTTGAAGGTTGCCACTGCCTTGTGAACTTTGAAAGTTACCACTGACTTGTGGGCTTTTGAAAAA
* * * * * *
1593757 ATGTCACTTACTTGTGGGTTTTAAAAATTGCCACTGACTTGTGGAC
66 ATGCCACTGACTTGTGGGTTCTAAAAATTACCACTAACTTATGGAC
1593803 TTTTGAAGGTTGCCACTGCCTTGT
1 TTTTGAAGGTTGCCACTGCCTTGT
1593827 TCACTTGCAT
Statistics
Matches: 112, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
111 88 0.79
112 19 0.17
113 5 0.04
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (111 bp):
TTTTGAAGGTTGCCACTGCCTTGTGAACTTTGAAAGTTACCACTGACTTGTGGGCTTTTGAAAAA
ATGCCACTGACTTGTGGGTTCTAAAAATTACCACTAACTTATGGAC
Found at i:1596333 original size:41 final size:42
Alignment explanation
Indices: 1596276--1596354 Score: 142
Period size: 41 Copynumber: 1.9 Consensus size: 42
1596266 CTAAGAGCTT
*
1596276 CCACCTACATTGCAACAAATAATTACATTA-AAAAAAATCAG
1 CCACCTACATTACAACAAATAATTACATTAGAAAAAAATCAG
1596317 CCACCTACATTACAACAAATAATTACATTAGAAAAAAA
1 CCACCTACATTACAACAAATAATTACATTAGAAAAAAA
1596355 AAAAATCTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 29 0.81
42 7 0.19
ACGTcount: A:0.53, C:0.22, G:0.04, T:0.22
Consensus pattern (42 bp):
CCACCTACATTACAACAAATAATTACATTAGAAAAAAATCAG
Found at i:1599421 original size:16 final size:17
Alignment explanation
Indices: 1599385--1599421 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
1599375 AACATAAAAT
*
1599385 TATTTTATTAATTAATA
1 TATTTTATTAAATAATA
1599402 -ATTTT-TTAAATAATA
1 TATTTTATTAAATAATA
1599417 TATTT
1 TATTT
1599422 AAAGTGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTTATTAAATAATA
Found at i:1599607 original size:48 final size:48
Alignment explanation
Indices: 1599554--1599653 Score: 157
Period size: 48 Copynumber: 2.1 Consensus size: 48
1599544 CCGTTGGTCC
*
1599554 ATTTAAGATTTATATTCAATAACCTT-AAAAAATTTTTACTTTTATTTT
1 ATTTAAGATTTATATTCAAT-ACATTCAAAAAATTTTTACTTTTATTTT
* *
1599602 ATTTAAGATTTATATTCAATACATTCCAAAATTTTTTACTTTTATTTT
1 ATTTAAGATTTATATTCAATACATTCAAAAAATTTTTACTTTTATTTT
1599650 ATTT
1 ATTT
1599654 TTTAAATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
47 4 0.08
48 44 0.92
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (48 bp):
ATTTAAGATTTATATTCAATACATTCAAAAAATTTTTACTTTTATTTT
Found at i:1599789 original size:17 final size:18
Alignment explanation
Indices: 1599750--1599789 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
1599740 CAAAAAAGAA
*
1599750 ATTTATTTTATTAATTAT
1 ATTTATTTTATTAAATAT
*
1599768 TTTTATTTT-TTAAATAT
1 ATTTATTTTATTAAATAT
1599785 ATTTA
1 ATTTA
1599790 ATAATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTATTTTATTAAATAT
Found at i:1599811 original size:28 final size:30
Alignment explanation
Indices: 1599756--1599818 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
1599746 AGAAATTTAT
*
1599756 TTTATTAATTATTTTTATTTTTTAAATATA
1 TTTAATAATTATTTTTATTTTTTAAATATA
1599786 TTTAATAATTA-TTTTA-TTTTTAAATATA
1 TTTAATAATTATTTTTATTTTTTAAATATA
1599814 TTTAA
1 TTTAA
1599819 ATGGTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 17 0.53
29 5 0.16
30 10 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (30 bp):
TTTAATAATTATTTTTATTTTTTAAATATA
Found at i:1600069 original size:26 final size:25
Alignment explanation
Indices: 1600040--1600112 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 25
1600030 TTGTAATTAG
1600040 TAATAATATAATTATATTATGTTATT
1 TAATAATATAATTATATTAT-TTATT
*
1600066 TAAT-TTA-AATTATATTATATT-TT
1 TAATAATATAATTATATTAT-TTATT
* * *
1600089 TATTAAT-TATTTATAATATTTATT
1 TAATAATATAATTATATTATTTATT
1600113 ATTTATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
23 7 0.18
24 25 0.66
25 2 0.05
26 4 0.11
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (25 bp):
TAATAATATAATTATATTATTTATT
Found at i:1600125 original size:26 final size:26
Alignment explanation
Indices: 1600054--1600135 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 26
1600044 AATATAATTA
1600054 TATTATGTTATTTA-ATTTAAATTATAT
1 TATTAT-TTATTTATATTTAAATTAT-T
* *
1600081 TATATTTTTATTAATTATTTATAA-TATT
1 TAT-TATTTATTTA-TATTTA-AATTATT
1600109 TATTATTTATTTATATTTAAATTATT
1 TATTATTTATTTATATTTAAATTATT
1600135 T
1 T
1600136 TAATTAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
25 2 0.04
26 11 0.24
27 17 0.37
28 6 0.13
29 8 0.17
30 2 0.04
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.63
Consensus pattern (26 bp):
TATTATTTATTTATATTTAAATTATT
Found at i:1600137 original size:16 final size:18
Alignment explanation
Indices: 1600062--1600137 Score: 56
Period size: 20 Copynumber: 4.3 Consensus size: 18
1600052 TATATTATGT
1600062 TATTTA-ATTTA-AATTA
1 TATTTATATTTATAATTA
*
1600078 TATTATATTTTTATTAATTA
1 TATT-TATATTTA-TAATTA
*
1600098 T-TTATAATATTTATTATT-
1 TATT-T-ATATTTATAATTA
1600116 TATTTATATTTA-AATTA
1 TATTTATATTTATAATTA
1600133 T-TTTA
1 TATTTA
1600138 ATTAAATAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
16 11 0.22
17 10 0.20
18 6 0.12
19 10 0.20
20 12 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTATATTTATAATTA
Found at i:1600137 original size:20 final size:19
Alignment explanation
Indices: 1600055--1600137 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 19
1600045 ATATAATTAT
*
1600055 ATTATGTTATTTA-ATTTAA
1 ATTATTTTATTTATATTT-A
*
1600074 ATTATATTATATTTTTA-TTA
1 ATTAT-TT-TATTTATATTTA
*
1600094 ATTA-TTTA-TAATATTT-
1 ATTATTTTATTTATATTTA
1600110 ATTA-TTTATTTATATTTAA
1 ATTATTTTATTTATATTT-A
1600129 ATTATTTTA
1 ATTATTTTA
1600138 ATTAAATAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
16 11 0.22
17 11 0.22
18 2 0.04
19 9 0.18
20 10 0.20
21 7 0.14
22 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (19 bp):
ATTATTTTATTTATATTTA
Found at i:1602854 original size:22 final size:22
Alignment explanation
Indices: 1602826--1602890 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
1602816 AATGTCAAAG
1602826 ATATTTTTCAAGTAATAAATTA
1 ATATTTTTCAAGTAATAAATTA
* *
1602848 ATGTTTTTCAAGCAATAAATTA
1 ATATTTTTCAAGTAATAAATTA
*
1602870 ATATTTGTCAAGTAA-AAATTA
1 ATATTTTTCAAGTAATAAATTA
1602891 TTCAAAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
21 6 0.16
22 32 0.84
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.42
Consensus pattern (22 bp):
ATATTTTTCAAGTAATAAATTA
Found at i:1603025 original size:13 final size:13
Alignment explanation
Indices: 1603007--1603033 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1602997 ACATATTGCT
1603007 TTGTATCGATACA
1 TTGTATCGATACA
1603020 TTGTATCGATACA
1 TTGTATCGATACA
1603033 T
1 T
1603034 GTTCTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1603030 original size:33 final size:32
Alignment explanation
Indices: 1602988--1603051 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
1602978 CACAACCAGA
* *
1602988 TGTATCGATACATATTGCTTTGTATCGATACAT
1 TGTATCGATACATATT-CTTTATATCAATACAT
*
1603021 TGTATCGATACATGTTCTTTATATCAATACA
1 TGTATCGATACATATTCTTTATATCAATACA
1603052 CCATAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTCTTTATATCAATACAT
Found at i:1606404 original size:34 final size:35
Alignment explanation
Indices: 1606366--1606432 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
1606356 CCTTACAACA
*
1606366 CTATCTTTT-CGAAGGCTAAGATAAAACCTCTTCC
1 CTATCTTTTACAAAGGCTAAGATAAAACCTCTTCC
*
1606400 CTATCTTTTACAAAGGCTAAGATAGAACCTCTT
1 CTATCTTTTACAAAGGCTAAGATAAAACCTCTT
1606433 AATCACTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 9 0.30
35 21 0.70
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTACAAAGGCTAAGATAAAACCTCTTCC
Found at i:1607045 original size:13 final size:13
Alignment explanation
Indices: 1607027--1607051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1607017 TACAAAGAAC
1607027 ATGTATCGATACA
1 ATGTATCGATACA
1607040 ATGTATCGATAC
1 ATGTATCGATAC
1607052 TAAGTAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1607069 original size:33 final size:32
Alignment explanation
Indices: 1607009--1607072 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1606999 CATTTTCTAG
1607009 TGTATCGATACAAAGAACATGTATCGATACAA
1 TGTATCGATACAAAGAACATGTATCGATACAA
* *
1607041 TGTATCGATACTAAGTAATATGTATCGATACA
1 TGTATCGATACAAAG-AACATGTATCGATACA
1607073 TATCGGTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAA
Found at i:1609439 original size:11 final size:11
Alignment explanation
Indices: 1609418--1609449 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
1609408 AAGGTAAACT
1609418 ATGAG-ATTTG
1 ATGAGAATTTG
1609428 ATGAGAATTTG
1 ATGAGAATTTG
1609439 ATGA-AATTTG
1 ATGAGAATTTG
1609449 A
1 A
1609450 AAAATATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (11 bp):
ATGAGAATTTG
Found at i:1609662 original size:21 final size:21
Alignment explanation
Indices: 1609617--1609662 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
1609607 CTTTTGCCAA
* *
1609617 AATGTATCGATACATGCTCTT
1 AATGTATCGATACAAGCTCTC
*
1609638 AATGTATCGATACAAGGTCTC
1 AATGTATCGATACAAGCTCTC
1609659 AATG
1 AATG
1609663 GTCAAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACAAGCTCTC
Found at i:1612113 original size:50 final size:49
Alignment explanation
Indices: 1612054--1612184 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 49
1612044 AAATTTCTAT
* **
1612054 ATTTTTCATCTCGGGGATACTCCAACCCTGGCTTTATTTCTAAAATATTG
1 ATTTTTCATCTCGGGGATACTCCAA-CCTGGCTTTATTTCTAAAACATCA
** *
1612104 ATTTTTCATCTCGATGATACTCCAACCTCGGTTTTATTTCTAAAACATCA
1 ATTTTTCATCTCGGGGATACTCCAACCT-GGCTTTATTTCTAAAACATCA
* * *
1612154 ATTTTTTATAATCGGGAATACTCCAATCCTG
1 ATTTTTCAT-CTCGGGGATACTCCAA-CCTG
1612185 TTATTTCCGA
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
49 3 0.04
50 48 0.72
51 13 0.19
52 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (49 bp):
ATTTTTCATCTCGGGGATACTCCAACCTGGCTTTATTTCTAAAACATCA
Found at i:1612254 original size:79 final size:77
Alignment explanation
Indices: 1612119--1612367 Score: 293
Period size: 79 Copynumber: 3.2 Consensus size: 77
1612109 TCATCTCGAT
* * * * * * * *
1612119 GATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTTATAATCGGGAATACTCCAATCCT
1 GATACTCCAACCCCGGCTTTATTTCTAAAATATCGATTTTTCACAATCGGG-ATACTCCAACCCC
1612184 GTTATTTCCGAGGG
65 GTTATTT-CGAGGG
* *
1612198 GATACTCCAACCCCAGCTTTATTTCTAAAATATTGATTTTTCACAATCGGAGATACTCCAACCCC
1 GATACTCCAACCCCGGCTTTATTTCTAAAATATCGATTTTTCACAATCGG-GATACTCCAACCCC
* *
1612263 GTTATATTGGCGGG
65 GTTAT-TTCGAGGG
* *
1612277 GATACTCCAACCCCGGCCTTATTTCTAAAGCT-TCGATTTTTCACAATCGGGGATACTCCAACCC
1 GATACTCCAACCCCGGCTTTATTTCTAAA-ATATCGATTTTTCACAATC-GGGATACTCCAACCC
*
1612341 CATTATTTTCGAGGG
64 CGTTA-TTTCGAGGG
1612356 GATACTCCAACC
1 GATACTCCAACC
1612368 TCGATTTTAT
Statistics
Matches: 146, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
79 139 0.95
80 7 0.05
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (77 bp):
GATACTCCAACCCCGGCTTTATTTCTAAAATATCGATTTTTCACAATCGGGATACTCCAACCCCG
TTATTTCGAGGG
Found at i:1612411 original size:158 final size:158
Alignment explanation
Indices: 1612119--1612420 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 158
1612109 TCATCTCGAT
* ** * * * *
1612119 GATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTTATAATCGGGAATACTCCAATCCT
1 GATACTCCAACCCCGGCCTTATTTCTAAAACATCAATTTTTCACAATCGGGAATACTCCAACCCC
* * ** * *
1612184 GTTATTTCCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAATATTGATTTTTCACAATCGGA
66 ATTATTTCCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAACACCGATTTCTCACAATAGGA
1612249 GATACTCCAACCCCGTTATATTGGCGGG
131 GATACTCCAACCCCGTTATATTGGCGGG
* * * *
1612277 GATACTCCAACCCCGGCCTTATTTCTAAAGCTTCGATTTTTCACAATCGGGGATACTCCAACCCC
1 GATACTCCAACCCCGGCCTTATTTCTAAAACATCAATTTTTCACAATCGGGAATACTCCAACCCC
* * * *
1612342 ATTATTTTCGAGGGGATACTCCAACCTC-GATTTTATTT-TCAAAACACCGACTTTCT-ATAATT
66 ATTATTTCCGAGGGGATACTCCAACCCCAG-CTTTATTTCT-AAAACACCGA-TTTCTCACAA-T
1612404 AGG-GATACTCCAACCCC
127 AGGAGATACTCCAACCCC
1612421 TATTTTATTT
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
157 2 0.02
158 110 0.92
159 7 0.06
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (158 bp):
GATACTCCAACCCCGGCCTTATTTCTAAAACATCAATTTTTCACAATCGGGAATACTCCAACCCC
ATTATTTCCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAACACCGATTTCTCACAATAGGA
GATACTCCAACCCCGTTATATTGGCGGG
Found at i:1612430 original size:51 final size:51
Alignment explanation
Indices: 1612354--1612464 Score: 152
Period size: 51 Copynumber: 2.2 Consensus size: 51
1612344 TATTTTCGAG
* * *
1612354 GGGATACTCCAACCTCGATTTTATTTTCAAAACACCGACTTTCT-ATAATTA
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGA-TTTCTCATAATCA
* * *
1612405 GGGATACTCCAACCCCTATTTTATTTCCAGAACACCGATTTTTCATAATCA
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTCTCATAATCA
1612456 GGGATACTC
1 GGGATACTC
1612465 TAGCCCCGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 4 0.08
51 49 0.92
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTCTCATAATCA
Found at i:1615928 original size:52 final size:52
Alignment explanation
Indices: 1615850--1615978 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1615840 CGAAATATGA
* * *
1615850 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
*
1615902 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
1615954 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1615979 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
Found at i:1615991 original size:52 final size:51
Alignment explanation
Indices: 1615850--1615998 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 51
1615840 CGAAATATGA
* *
1615850 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
* *
1615902 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
*
1615954 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1615999 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTAGGC
Found at i:1616005 original size:13 final size:13
Alignment explanation
Indices: 1615987--1616011 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1615977 CAAAGATCAG
1615987 TGTATCGATACAA
1 TGTATCGATACAA
1616000 TGTATCGATACA
1 TGTATCGATACA
1616012 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1616089 original size:33 final size:33
Alignment explanation
Indices: 1616052--1616118 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1616042 AGTAGCTTAA
1616052 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
1616085 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1616118 A
1 A
1616119 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1616092 original size:13 final size:13
Alignment explanation
Indices: 1616074--1616098 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1616064 CAAAAAAATA
1616074 TGTATCGATACAT
1 TGTATCGATACAT
1616087 TGTATCGATACA
1 TGTATCGATACA
1616099 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1616879 original size:49 final size:49
Alignment explanation
Indices: 1616775--1616884 Score: 150
Period size: 49 Copynumber: 2.2 Consensus size: 49
1616765 GCGGCTAGCG
* *
1616775 ATATTAGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCCACT
1 ATATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCCACT
* * *
1616824 ACATTGGACTTAAAGATGATGGTGCCAATATGCTGATTCAAGG-CCAGCT
1 ATATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCCA-CT
*
1616873 ATATTGGGCTTA
1 ATATTGGACTTA
1616885 GAAGGGTTGC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 3 0.06
49 50 0.94
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (49 bp):
ATATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCCACT
Found at i:1616939 original size:33 final size:33
Alignment explanation
Indices: 1616884--1617477 Score: 971
Period size: 33 Copynumber: 18.2 Consensus size: 33
1616874 TATTGGGCTT
1616884 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
** * *
1616917 AGAATTGTTGTCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
1616950 AG-AGGGTTACCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1616981 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617014 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617047 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617080 A-AAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617112 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTT-G
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
1617144 AGAAGGGTTGCCACGGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617177 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
1617210 AGAAGGGTTGCCACCGACTTGTGTGGGTTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
1617243 AAAAAGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617276 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617309 A-AAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617341 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTT-G
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617373 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617406 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617439 A-AAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1617471 A-AAGGGT
1 AGAAGGGT
1617478 GAAAGATGCC
Statistics
Matches: 527, Mismatches: 18, Indels: 33
0.91 0.03 0.06
Matches are distributed among these distances:
31 13 0.02
32 209 0.40
33 289 0.55
34 16 0.03
ACGTcount: A:0.20, C:0.18, G:0.35, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:1616964 original size:65 final size:65
Alignment explanation
Indices: 1616877--1617477 Score: 941
Period size: 65 Copynumber: 9.3 Consensus size: 65
1616867 CCAGCTATAT
** * *
1616877 TGGGC-TTAGA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATTGTTGTCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
*
1616940 TGGGCTTTAGAGAGGGTTACCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
*
1617004 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1 TGGGCTTTAG-AGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1617069 G
65 G
*
1617070 TGGGCTTTAGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAA-GGTTGCCACCGACTTGT
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCGACTTGT
1617134 G
65 G
*
1617135 TGGGCTTT-GAGAAGGGTTGCCACGGACTTGTGTGGGCTTTAGAAGAA-GGTTGCCACCGACTTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCGACTTG
1617198 TG
64 TG
* * *
1617200 TGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGTTTTAGAAAAAGGTTGCCACCGACTTGT
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1617265 G
65 G
1617266 TGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGGTTGCCACCGACTTGT
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1617330 G
65 G
*
1617331 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGT
1 TGGGCTTTAG-AGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1617395 G
65 G
*
1617396 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGGTTGCCACCGACTTGT
1 TGGGCTTTAG-AGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1617460 G
65 G
*
1617461 TGGGCTTTAGAAAGGGT
1 TGGGCTTTAGAGAGGGT
1617478 GAAAGATGCC
Statistics
Matches: 508, Mismatches: 19, Indels: 21
0.93 0.03 0.04
Matches are distributed among these distances:
63 5 0.01
64 44 0.09
65 324 0.64
66 135 0.27
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (65 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
Found at i:1617289 original size:229 final size:229
Alignment explanation
Indices: 1616877--1617473 Score: 1062
Period size: 229 Copynumber: 2.6 Consensus size: 229
1616867 CCAGCTATAT
** * *
1616877 TGGGC-TTAGAAG--GGTTGCCACCGACTTGTGTGGGCTTTAGAGAATTGTTGTCACCAACTTGT
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGT
* *
1616939 GTGGGCTTTAG-AGAGGGTTACCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTG
65 GTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTG
*
1617002 TGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTT
130 TGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTT
1617067 GTGTGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
195 GTGTGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
*
1617102 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACGGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1617167 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
66 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
*
1617232 GTGGGTTTTAGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTG
131 GTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTG
1617297 TGTGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
196 TGTGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
1617331 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1617396 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGGTTGCCACCGACTTGT
66 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
1617460 GTGGGCTTTAGAAA
131 GTGGGCTTTAGAAA
1617474 GGGTGAAAGA
Statistics
Matches: 356, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
225 5 0.01
226 7 0.02
227 29 0.08
228 87 0.24
229 228 0.64
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (229 bp):
TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGT
GTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTG
TGTGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
Found at i:1617579 original size:31 final size:30
Alignment explanation
Indices: 1617544--1617836 Score: 183
Period size: 31 Copynumber: 9.0 Consensus size: 30
1617534 CTTAAAAAGG
1617544 GAAAAAAGAGTGCCACGGAGTTGT-GAGCTTT
1 GAAAAAAG-GTGCCACGGAGTTGTGGA-CTTT
* *
1617575 GAAAAGAAGGTGCCACGGAGTCGCGGACTTT
1 GAAAA-AAGGTGCCACGGAGTTGTGGACTTT
* * *
1617606 GAAAGGAAGGTGCCACGGAGTCGTGGACTTA
1 GAAA-AAAGGTGCCACGGAGTTGTGGACTTT
* * *
1617637 AAAGGAACAAGGTGCCATGGGGTTGTGGACTTT
1 GAA--AA-AAGGTGCCACGGAGTTGTGGACTTT
* * *
1617670 AAAAGGGTAAAAGAGTGCCACGGAATTGTGGGCTTT
1 -GAA----AAAAG-GTGCCACGGAGTTGTGGACTTT
*** * *
1617706 GAAAAGAAGGTGCCGTAGAGTCGTGGACTTA
1 GAAAA-AAGGTGCCACGGAGTTGTGGACTTT
*
1617737 AAAGGAACAAGGTGCCACGGAGTTGTGGACTTT
1 GAA--AA-AAGGTGCCACGGAGTTGTGGACTTT
* *
1617770 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 -----GAAAAAAG-GTGCCACGGAGTTGTGGACTTT
*
1617806 GAAAAAAAGGTGCCACGGAATTGTGGACTTT
1 G-AAAAAAGGTGCCACGGAGTTGTGGACTTT
1617837 AAGAAGGTAT
Statistics
Matches: 205, Mismatches: 37, Indels: 40
0.73 0.13 0.14
Matches are distributed among these distances:
31 91 0.44
32 14 0.07
33 44 0.21
34 3 0.01
35 8 0.04
36 44 0.21
38 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.20
Consensus pattern (30 bp):
GAAAAAAGGTGCCACGGAGTTGTGGACTTT
Found at i:1617715 original size:100 final size:100
Alignment explanation
Indices: 1617513--1617835 Score: 390
Period size: 100 Copynumber: 3.2 Consensus size: 100
1617503 TAAAAAGAAC
* * *
1617513 AAGGTGCCACGGAGTTGTGGGCTTAAAAAGGGAAAAAAGAGTGCCACGGAGTTGT-GAGCTTTGA
1 AAGGTGCCACGGAGTCGTGGACTT-AAAA-GG-AACAAG-GTGCCACGGAGTTGTGGA-CTTT-A
* * * *
1617577 AAA--G---AAG-GTGCCACGGAGTCGCGGACTTTGAAAGG
60 AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* *
1617612 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCATGGGGTTGTGGACTTTAAAAGGG
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGG
* *
1617677 TAAAAGAGTGCCACGGAATTGTGGGCTTTGAAAAG
66 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
***
1617712 AAGGTGCCGTAGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGG
1 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGG
*
1617777 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAA
66 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* *
1617812 AAGGTGCCACGGAATTGTGGACTT
1 AAGGTGCCACGGAGTCGTGGACTT
1617836 TAAGAAGGTA
Statistics
Matches: 194, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
94 4 0.02
95 17 0.09
96 8 0.04
97 2 0.01
98 4 0.02
99 25 0.13
100 134 0.69
ACGTcount: A:0.31, C:0.14, G:0.35, T:0.20
Consensus pattern (100 bp):
AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGG
AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
Found at i:1617719 original size:131 final size:130
Alignment explanation
Indices: 1617478--1617836 Score: 422
Period size: 131 Copynumber: 2.7 Consensus size: 130
1617468 TAGAAAGGGT
* * * * * *
1617478 GAAAGATGCCATGAAGTTGTGGACTTAAAAAGAACAAGGTGCCACGGAGTTGTGGGCTTAAAAAG
1 GAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAAG
* * * *
1617543 GGAAAAAAGAGTGCCACGGAGTTGTGAGCTTTGAAAAGAAGGTGCCACGGAGTCGCGGACTTTGA
66 GG--AAAAGAGTGCCACGGAATTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTCGCGGAC-TTAA
1617608 AAG
128 AAG
* * *
1617611 G-AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCATGGGGTTGTGGACTTTAAAAG
1 GAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAAG
** *
1617675 GGTAAAAGAGTGCCACGGAATTGTGGGCTTTGAAAAGAAGGTGCCGTAGAGTCGTGGACTTAAAA
66 GG-AAAAGAGTGCCACGGAATTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTCGCGGACTTAAAA
1617740 G
130 G
* *
1617741 GAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 G-A-AAGGTGCCACGGAGTCGTGGAC-TTAAAA-GGAACAAG-GTGCCACGGAGTTGTGGGCTTT
* *
1617806 GAAA---AAAAG-GTGCCACGGAATTGTGGACTTT
61 AAAAGGGAAAAGAGTGCCACGGAATTGTGGGCTTT
1617837 AAGAAGGTAT
Statistics
Matches: 196, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
130 7 0.04
131 71 0.36
132 61 0.31
133 22 0.11
134 6 0.03
135 7 0.04
136 22 0.11
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.20
Consensus pattern (130 bp):
GAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAAG
GGAAAAGAGTGCCACGGAATTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTCGCGGACTTAAAAG
Found at i:1618824 original size:16 final size:16
Alignment explanation
Indices: 1618788--1618825 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
1618778 TTTTTCCTTC
1618788 TTTTT-TTTTTGTTTG
1 TTTTTGTTTTTGTTTG
*
1618803 TTTTTGTTTTTGTTTT
1 TTTTTGTTTTTGTTTG
1618819 TTTTTGT
1 TTTTTGT
1618826 GAAGATTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (16 bp):
TTTTTGTTTTTGTTTG
Found at i:1619193 original size:12 final size:12
Alignment explanation
Indices: 1619176--1619205 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
1619166 CTTCTTCTTC
1619176 TTTTTTTTTTGT
1 TTTTTTTTTTGT
1619188 TTTTTTTTTTGT
1 TTTTTTTTTTGT
1619200 TTTTTT
1 TTTTTT
1619206 CATCACTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (12 bp):
TTTTTTTTTTGT
Found at i:1625489 original size:13 final size:13
Alignment explanation
Indices: 1625471--1625498 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1625461 ATTACTATGC
1625471 TGTCTTGCTGATT
1 TGTCTTGCTGATT
1625484 TGTCTTGCTGATT
1 TGTCTTGCTGATT
1625497 TG
1 TG
1625499 AAGTGGCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.25, T:0.54
Consensus pattern (13 bp):
TGTCTTGCTGATT
Found at i:1626179 original size:52 final size:52
Alignment explanation
Indices: 1626101--1626229 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1626091 CGAAATATGA
* * *
1626101 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
*
1626153 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
1626205 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1626230 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
Found at i:1626242 original size:52 final size:51
Alignment explanation
Indices: 1626101--1626249 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 51
1626091 CGAAATATGA
* *
1626101 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
* *
1626153 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
*
1626205 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1626250 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTAGGC
Found at i:1626256 original size:13 final size:13
Alignment explanation
Indices: 1626238--1626262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1626228 CAAAGATCAG
1626238 TGTATCGATACAA
1 TGTATCGATACAA
1626251 TGTATCGATACA
1 TGTATCGATACA
1626263 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1626340 original size:33 final size:33
Alignment explanation
Indices: 1626303--1626369 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1626293 AGTAGCTTAA
1626303 ATTGTATCGATACAAAAAAATATGTATTGATAC
1 ATTGTATCGATACAAAAAAATATGTATTGATAC
* ***
1626336 ATTGTATCGATACAACACTTTATGTATTGATAC
1 ATTGTATCGATACAAAAAAATATGTATTGATAC
1626369 A
1 A
1626370 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATTGATAC
Found at i:1627373 original size:10 final size:10
Alignment explanation
Indices: 1627358--1627391 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
1627348 AATCAAAATT
1627358 CATTCAAAAA
1 CATTCAAAAA
*
1627368 CATTCAAGAA
1 CATTCAAAAA
*
1627378 CATTCATAAA
1 CATTCAAAAA
1627388 CATT
1 CATT
1627392 TAACTTGCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (10 bp):
CATTCAAAAA
Found at i:1630553 original size:15 final size:15
Alignment explanation
Indices: 1630533--1630561 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1630523 GTCAACCTCT
1630533 TTATCATCATCATCG
1 TTATCATCATCATCG
1630548 TTATCATCATCATC
1 TTATCATCATCATC
1630562 ATCATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (15 bp):
TTATCATCATCATCG
Found at i:1632930 original size:19 final size:19
Alignment explanation
Indices: 1632908--1632944 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1632898 CAATACAAAG
* *
1632908 AAATTGTATTGATACATTA
1 AAATTATATAGATACATTA
1632927 AAATTATATAGATACATT
1 AAATTATATAGATACATT
1632945 TTGACTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (19 bp):
AAATTATATAGATACATTA
Found at i:1634831 original size:27 final size:27
Alignment explanation
Indices: 1634783--1634846 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
1634773 CTTATATCGA
* * * *
1634783 AAATAGTGTAAAATTTATAAAAGGGGAG
1 AAATAGAG-AAAATTCACAAAAGAGGAG
1634811 AAATAGAGAAAATTCACAAAAGAGGAG
1 AAATAGAGAAAATTCACAAAAGAGGAG
1634838 AAATAGAGA
1 AAATAGAGA
1634847 TTCTTTTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.56, C:0.03, G:0.23, T:0.17
Consensus pattern (27 bp):
AAATAGAGAAAATTCACAAAAGAGGAG
Found at i:1635384 original size:21 final size:22
Alignment explanation
Indices: 1635344--1635386 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
1635334 AATGTCAAAG
1635344 ATGTTTTTCAAGCAATAAATTA
1 ATGTTTTTCAAGCAATAAATTA
*
1635366 ATGTTTTTCAAGTAA-AAATTA
1 ATGTTTTTCAAGCAATAAATTA
1635387 TTCAAAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (22 bp):
ATGTTTTTCAAGCAATAAATTA
Found at i:1635522 original size:33 final size:32
Alignment explanation
Indices: 1635484--1635547 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1635474 CACACCCAGA
1635484 TGTATCGATACATATTGCTTTGTATCAATACAT
1 TGTATCGATACATATT-CTTTGTATCAATACAT
* *
1635517 TGTATCGATACATGTTCTTTGTATCGATACA
1 TGTATCGATACATATTCTTTGTATCAATACA
1635548 CCATAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTCTTTGTATCAATACAT
Found at i:1636135 original size:35 final size:34
Alignment explanation
Indices: 1636084--1636149 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 34
1636074 TAAGTGATTG
* *
1636084 AGAGGTTCTATCTTAGCCTTTGTAAAAGATAGGGA
1 AGAGGTTCTATATTAGCCTTCG-AAAAGATAGGGA
1636119 AGAGGTTCTATATTAGCCTTCGAAAAGATAG
1 AGAGGTTCTATATTAGCCTTCGAAAAGATAG
1636150 TGTTGTAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 9 0.31
35 20 0.69
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (34 bp):
AGAGGTTCTATATTAGCCTTCGAAAAGATAGGGA
Found at i:1639155 original size:167 final size:167
Alignment explanation
Indices: 1638829--1639254 Score: 512
Period size: 167 Copynumber: 2.6 Consensus size: 167
1638819 AATAAATACA
** * * * * * *
1638829 AAAAAATTCAAAACTGAT-AAAATAAATTGAATTTAT-AAAACTAATTTAATGAAAATTT-AATG
1 AAAAAATGAAAAACTCATGAAAATAAA-TGAATTTTTCAAAACTGATTTACT-ATAATTTAAATA
** * * * ** *
1638891 ACAATATTCGATGAAT-TATAAAAATTTT-AAATAGAGAAA-AATCTTCCCGAAGACATTTATGG
64 ATGATATTTGATGAATAT-TAAAAATTTTGAAAT-GAGAAACCACCCCCCCGAAAACATTTATGG
* *
1638953 AATGGAAAACTTGGTTTTTTAGAAACAAGAGAATTTCAAGG
127 AAAGGAAAACTTGATTTTTTAGAAACAAGAGAATTTCAAGG
*
1638994 -AAAAATGAAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATGATTTAAATAA
1 AAAAAATG-AAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAATTTAAATAA
*
1639058 TGATATTTTATGAATATTAAAAATTTTGAAATGAGAAACCACCCCCCCGAAAACATTTAT-GAAA
65 TGATATTTGATGAATATTAAAAATTTTGAAATGAGAAACCACCCCCCCGAAAACATTTATGGAAA
1639122 GAGAAAACTTGATTTTTT-GAAA-ATAGAAGAATTTCAAGG
130 G-GAAAACTTGATTTTTTAGAAACA-AG-AGAATTTCAAGG
* *
1639161 AAAAAATGAAACACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAATTTAAATGAT
1 AAAAAATGAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAATTTAAATAAT
1639226 GATATTTGATGAATATTAAAAATTTTGAA
66 GATATTTGATGAATATTAAAAATTTTGAA
1639255 TCAATCAAAA
Statistics
Matches: 226, Mismatches: 24, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
164 6 0.03
165 22 0.10
166 61 0.27
167 130 0.58
168 7 0.03
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (167 bp):
AAAAAATGAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAATTTAAATAAT
GATATTTGATGAATATTAAAAATTTTGAAATGAGAAACCACCCCCCCGAAAACATTTATGGAAAG
GAAAACTTGATTTTTTAGAAACAAGAGAATTTCAAGG
Found at i:1639337 original size:167 final size:166
Alignment explanation
Indices: 1638984--1639399 Score: 452
Period size: 167 Copynumber: 2.5 Consensus size: 166
1638974 GAAACAAGAG
* *
1638984 AATTTCAAGGAAAAATGAAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATGA
1 AATTTCAAGAAAAAATG-AAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAA
* * * ** *
1639049 TTTAAATAATGATATTTTATGAATATTAAAAATTTTGAAATGAGAAACCACCCCCCCGAAAACAT
65 TTTAAATAATGATATTTGATGAATATTAAAAATTTTGAAATCAGAAACAACCCCCCAAAAAAAAT
* * ** *
1639114 TTATGAAAGAGAAAACTTGATTTTTTGAAAATAGAAG
130 TTATCAAAGAGAAAACTTGATATTTCAAAAATAGAAA
*
1639151 AATTTCAAGGAAAAAATGAAACACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAA
1 AATTTCAA-GAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAA
* * *
1639216 TTTAAATGATGATATTTGATGAATATTAAAAATTTTG-AATCA-ATCAA-AATCCTCCAAAAAAA
65 TTTAAATAATGATATTTGATGAATATTAAAAATTTTGAAATCAGA--AACAACCCCCCAAAAAAA
*
1639278 ATTTA-CAAAGAAGAAAACTTTG-TATTTCAAAAATGGAAAA
128 ATTTATCAAAG-AGAAAAC-TTGATATTTCAAAAATAG-AAA
* * ** * *
1639318 AATTTTAA-AAGACAAATGAAAAACTCATG-AAATAAAAAGAATTTTGAAAAACTGATCTAATAG
1 AATTTCAAGAA-A-AAATGAAAAACTCATGAAAAT-AAATGAATTTTTCAAAACTGATTTACTA-
*
1639381 TAA-TTAAATAATAATATTT
62 TAATTTAAATAATGATATTT
1639400 AAAGAATTTT
Statistics
Matches: 212, Mismatches: 27, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
165 7 0.03
166 40 0.19
167 154 0.73
168 11 0.05
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.31
Consensus pattern (166 bp):
AATTTCAAGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTCAAAACTGATTTACTATAAT
TTAAATAATGATATTTGATGAATATTAAAAATTTTGAAATCAGAAACAACCCCCCAAAAAAAATT
TATCAAAGAGAAAACTTGATATTTCAAAAATAGAAA
Found at i:1640670 original size:81 final size:81
Alignment explanation
Indices: 1640527--1640890 Score: 340
Period size: 81 Copynumber: 4.5 Consensus size: 81
1640517 AGCAAATGTT
** * *
1640527 GAACCATCATGTCCAACGAG-AATGAAAAGAGTTTGACCAGATACAATCAAACGGGAATGAAAAG
1 GAACCATCATGT-CAAATAGTAATAAAAAGAGTTTGACCAGATACAATCAAACGAGAATGAAAAG
1640591 ATGTTTGACCAGGGCGA
65 ATGTTTGACCAGGGCGA
* * * * * *
1640608 GAACGATTATGTCAAATAGTAATGAAAAA-AGTTTGACTAGATACAATCAAACCATAAAGAAAAG
1 GAACCATCATGTCAAATAGTAAT-AAAAAGAGTTTGACCAGATACAATCAAACGAGAATGAAAAG
* * *
1640672 ATATTTGACCAAGGTGA
65 ATGTTTGACCAGGGCGA
* * * * * * *
1640689 AAACCATCACGTCAAATAGTAATAAAAAAGAGTTTGACTA-ACTACAGTAAAACGGGGATGAAAA
1 GAACCATCATGTCAAATAGTAAT-AAAAAGAGTTTGACCAGA-TACAATCAAACGAGAATGAAAA
* * * *
1640753 AATGTTTAACCATGGTGA
64 GATGTTTGACCAGGGCGA
* * * * * * * *
1640771 GAACCACCAAGTCAAATGGTAATAAAAAGAGTTTAACCAGATACAGTTAAACAATAATGAAAAGA
1 GAACCATCATGTCAAATAGTAATAAAAAGAGTTTGACCAGATACAATCAAACGAGAATGAAAAGA
* *
1640836 TGTTTGACTAGGGCAA
66 TGTTTGACCAGGGCGA
*
1640852 GAACCATCATGTCAAACAGTAATAAAAATG-GTTTGACCA
1 GAACCATCATGTCAAATAGTAATAAAAA-GAGTTTGACCA
1640891 AGGCGAGAAC
Statistics
Matches: 226, Mismatches: 51, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
80 5 0.02
81 157 0.69
82 64 0.28
ACGTcount: A:0.45, C:0.14, G:0.19, T:0.21
Consensus pattern (81 bp):
GAACCATCATGTCAAATAGTAATAAAAAGAGTTTGACCAGATACAATCAAACGAGAATGAAAAGA
TGTTTGACCAGGGCGA
Found at i:1640835 original size:163 final size:163
Alignment explanation
Indices: 1640551--1640890 Score: 393
Period size: 163 Copynumber: 2.1 Consensus size: 163
1640541 AACGAGAATG
* * * * **
1640551 AAAAGAGTTTGACCAGATACAATCAAACGGGAATGAAAAGATGTTTGACCAGGGCGAGAACGATT
1 AAAAGAGTTTGACCAGATACAATAAAACGGGAATGAAAAAATGTTTAACCAGGGCGAGAACCACC
* * * *
1640616 ATGTCAAATAGTAATGAAAAAAGTTTGACTAGATACAATCAAACCATAAAGAAAAGATATTTGAC
66 AAGTCAAATAGTAATGAAAAAAGTTTAACCAGATACAATCAAACAATAAAGAAAAGATATTTGA-
*
1640681 CAAGGTG-AA-AACCATCACGTCAAATAGTAATAA
130 CAAGG-GCAAGAACCATCACGTCAAACAGTAATAA
* * * * *
1640714 AAAAGAGTTTGACTA-ACTACAGTAAAACGGGGATGAAAAAATGTTTAACCATGGTGAGAACCAC
1 AAAAGAGTTTGACCAGA-TACAATAAAACGGGAATGAAAAAATGTTTAACCAGGGCGAGAACCAC
* * * * *
1640778 CAAGTCAAATGGTAAT-AAAAAGAGTTTAACCAGATACAGTTAAACAATAATGAAAAGATGTTTG
65 CAAGTCAAATAGTAATGAAAAA-AGTTTAACCAGATACAATCAAACAATAAAGAAAAGATATTTG
* *
1640842 ACTAGGGCAAGAACCATCATGTCAAACAGTAATAA
129 ACAAGGGCAAGAACCATCACGTCAAACAGTAATAA
*
1640877 AAATG-GTTTGACCA
1 AAAAGAGTTTGACCA
1640891 AGGCGAGAAC
Statistics
Matches: 148, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
161 1 0.01
162 20 0.14
163 127 0.86
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (163 bp):
AAAAGAGTTTGACCAGATACAATAAAACGGGAATGAAAAAATGTTTAACCAGGGCGAGAACCACC
AAGTCAAATAGTAATGAAAAAAGTTTAACCAGATACAATCAAACAATAAAGAAAAGATATTTGAC
AAGGGCAAGAACCATCACGTCAAACAGTAATAA
Found at i:1640886 original size:45 final size:44
Alignment explanation
Indices: 1640837--1641037 Score: 126
Period size: 45 Copynumber: 4.8 Consensus size: 44
1640827 ATGAAAAGAT
*
1640837 GTTTGACTAGGGCAAGAACCATCATGTCAAACAGTAATAAAAATG
1 GTTTGACTAGGGCAAGAACCATCACGTCAAACAG-AATAAAAATG
* * * * * *
1640882 GTTTGACCAAGGCGAGAACCATCACATCAAACCAGAATGAAAAGG
1 GTTTGACTAGGGCAAGAACCATCACGTCAAA-CAGAATAAAAATG
*
1640927 GTTTGAC-----C-AGATA-CA--A--TCAAATAGAAATGAAAAGAT-
1 GTTTGACTAGGGCAAGA-ACCATCACGTCAAACAG-AAT-AAAA-ATG
** * *
1640963 GTTTGACTAGGGTGAGAACCATCATGTCAAAC--AA-GAAAATG
1 GTTTGACTAGGGCAAGAACCATCACGTCAAACAGAATAAAAATG
1641004 AGTTTGACTAGGGCAAGAACCATCACGTCAAACA
1 -GTTTGACTAGGGCAAGAACCATCACGTCAAACA
1641038 ATAGTGAAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 40
0.68 0.09 0.23
Matches are distributed among these distances:
34 2 0.02
35 8 0.07
36 10 0.08
37 2 0.02
39 5 0.04
40 4 0.03
41 4 0.03
42 34 0.28
43 2 0.02
44 1 0.01
45 41 0.34
46 8 0.07
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.19
Consensus pattern (44 bp):
GTTTGACTAGGGCAAGAACCATCACGTCAAACAGAATAAAAATG
Found at i:1640974 original size:126 final size:123
Alignment explanation
Indices: 1640795--1641071 Score: 351
Period size: 126 Copynumber: 2.2 Consensus size: 123
1640785 AATGGTAATA
* * *
1640795 AAAAGAGTTTAACCAGATACAGTTAAACAATAATGAAAAGATGTTTGACTAGGGCAAGAACCATC
1 AAAAGAGTTTGACCAGATACAATCAAACAATAATGAAAAGATGTTTGACTAGGGCAAGAACCATC
* *
1640860 ATGTCAAACAGTAATAAAAATG-GTTTGACCAAGGCGAGAACCATCACATCAAACCAGAATG
66 ATGTCAAAC---AA-AAAAATGAGTTTGACCAAGGCAAGAACCATCACATCAAACAAGAATG
* * **
1640921 AAAAGGGTTTGACCAGATACAATCAAATAGA-AATGAAAAGATGTTTGACTAGGGTGAGAACCAT
1 AAAAGAGTTTGACCAGATACAATCAAACA-ATAATGAAAAGATGTTTGACTAGGGCAAGAACCAT
* * * * * *
1640985 CATGTCAAACAAGAAAATGAGTTTGACTAGGGCAAGAACCATCACGTCAAACAATAGTG
65 CATGTCAAACAAAAAAATGAGTTTGACCAAGGCAAGAACCATCACATCAAACAAGAATG
*
1641044 AAAAGAGTTTGACCAGATACTATCAAAC
1 AAAAGAGTTTGACCAGATACAATCAAAC
1641072 GATTAACAAG
Statistics
Matches: 131, Mismatches: 18, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
122 6 0.05
123 59 0.45
126 65 0.50
127 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.20
Consensus pattern (123 bp):
AAAAGAGTTTGACCAGATACAATCAAACAATAATGAAAAGATGTTTGACTAGGGCAAGAACCATC
ATGTCAAACAAAAAAATGAGTTTGACCAAGGCAAGAACCATCACATCAAACAAGAATG
Found at i:1641009 original size:42 final size:42
Alignment explanation
Indices: 1640955--1641038 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
1640945 AAATAGAAAT
** *
1640955 GAAAAGATGTTTGACTAGGGTGAGAACCATCATGTCAAACAA
1 GAAAAGATGTTTGACTAGGGCAAGAACCATCACGTCAAACAA
1640997 GAAAATGA-GTTTGACTAGGGCAAGAACCATCACGTCAAACAA
1 GAAAA-GATGTTTGACTAGGGCAAGAACCATCACGTCAAACAA
1641039 TAGTGAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 36 0.95
43 2 0.05
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.19
Consensus pattern (42 bp):
GAAAAGATGTTTGACTAGGGCAAGAACCATCACGTCAAACAA
Found at i:1641370 original size:21 final size:21
Alignment explanation
Indices: 1641344--1641387 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1641334 CATGATTTGA
1641344 TTCATT-ATTCATGTTTCATTT
1 TTCATTCATTCAT-TTTCATTT
*
1641365 TTCATTCATTCATTTTCCTTT
1 TTCATTCATTCATTTTCATTT
1641386 TT
1 TT
1641388 ATATTGTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.16, C:0.18, G:0.02, T:0.64
Consensus pattern (21 bp):
TTCATTCATTCATTTTCATTT
Found at i:1643540 original size:81 final size:81
Alignment explanation
Indices: 1643200--1643565 Score: 297
Period size: 81 Copynumber: 4.5 Consensus size: 81
1643190 GTAAAGGTTG
* * ** *
1643200 AACCATCACGTCCAATGAG-GATGAAAAGTGTTTGACCAGATACAGTCAAACG-TAAATAAAAAA
1 AACCATCACGTCAAAT-AGTAATGAAAAAAGTTTGACCAGATACAGTCAAACGAT-AATAAAAAG
* *
1643263 ATGTTTGACCAAGGCGAG
64 ATGTTTGACCAAGGCAAA
* * * * *
1643281 AGCCATTACGTCAAATAGTAATGAAAAGAGTTTGACCAGGTACAGTCAAACGATAATGAAAAGAT
1 AACCATCACGTCAAATAGTAATGAAAAAAGTTTGACCAGATACAGTCAAACGATAATAAAAAGAT
*
1643346 GAGTTTGACCAGGGCAAA
66 --GTTTGACCAAGGCAAA
* * * * * * * * ***
1643364 AACCATTACGTTAAATAGTAATAAAAAAGAGTTTGACAAAATATAGTAAAATGGGGATAAAAAGA
1 AACCATCACGTCAAATAGTAATGAAAAA-AGTTTGACCAGATACAGTCAAACGATAATAAAAAGA
* ** *
1643429 TGTTTGACTAAGGTGAG
65 TGTTTGACCAAGGCAAA
* * * * *
1643446 GACCACCAAGTCAAAT-GATAATGAAAAAAGTTTAACTAGATACAGTCAAACGATAATAAAAAGA
1 AACCATCACGTCAAATAG-TAATGAAAAAAGTTTGACCAGATACAGTCAAACGATAATAAAAAGA
* *
1643510 TGTTTGACCAGGGTAAA
65 TGTTTGACCAAGGCAAA
* * * **
1643527 AAACATCACGTCAAACAGAAATGAAAAGGGTTTGACCAG
1 AACCATCACGTCAAATAGTAATGAAAAAAGTTTGACCAG
1643566 GGTAAGAACT
Statistics
Matches: 219, Mismatches: 59, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
80 2 0.01
81 120 0.55
82 33 0.15
83 37 0.17
84 27 0.12
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.21
Consensus pattern (81 bp):
AACCATCACGTCAAATAGTAATGAAAAAAGTTTGACCAGATACAGTCAAACGATAATAAAAAGAT
GTTTGACCAAGGCAAA
Found at i:1643567 original size:45 final size:45
Alignment explanation
Indices: 1643491--1643610 Score: 145
Period size: 45 Copynumber: 2.6 Consensus size: 45
1643481 CTAGATACAG
* * * *
1643491 TCAAACGATAATAAAAAGATGTTTGACCAGGGTAAAAAAC-ATCACG
1 TCAAACCAGAATAAAAAG-GGTTTGACCAGGGT-AAAAACTATCACA
* *
1643537 TCAAA-CAGAAATGAAAAGGGTTTGACCAGGGTAAGAACTATCACA
1 TCAAACCAG-AATAAAAAGGGTTTGACCAGGGTAAAAACTATCACA
1643582 TCAAACCAGAATAAAAAGGGTTTGACCAG
1 TCAAACCAGAATAAAAAGGGTTTGACCAG
1643611 ATACAGTCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 5 0.08
45 43 0.67
46 16 0.25
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.18
Consensus pattern (45 bp):
TCAAACCAGAATAAAAAGGGTTTGACCAGGGTAAAAACTATCACA
Found at i:1643758 original size:17 final size:18
Alignment explanation
Indices: 1643727--1643760 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1643717 TAAAAAATCT
*
1643727 TAAAAAATCATTTTTTAG
1 TAAAAAATCAATTTTTAG
1643745 TAAAAAAT-AATTTTTA
1 TAAAAAATCAATTTTTA
1643761 AAGTTAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
TAAAAAATCAATTTTTAG
Found at i:1644918 original size:8 final size:8
Alignment explanation
Indices: 1644905--1644952 Score: 71
Period size: 8 Copynumber: 5.9 Consensus size: 8
1644895 AGCCACCTCC
1644905 TTTTTTCT
1 TTTTTTCT
1644913 TTTTTTCT
1 TTTTTTCT
1644921 TTTTTTCT
1 TTTTTTCT
1644929 TTTTTTCT
1 TTTTTTCT
1644937 TCTTTTT-T
1 T-TTTTTCT
1644945 TTCTTTTC
1 TT-TTTTC
1644953 CAACCCAGGC
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
7 1 0.03
8 31 0.84
9 5 0.14
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTCT
Done.