Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold200
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 649609
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:2404 original size:88 final size:84
Alignment explanation
Indices: 2277--2588 Score: 295
Period size: 87 Copynumber: 3.6 Consensus size: 84
2267 TCATATAATT
* * *
2277 TTTGGGGAAA-TCTATCCCCACTATTTCGAAAGGATACTCCAACCCTGTTCTAACAAATATTTAA
1 TTTGGGGAAACTCCATCCCCACTA-TTCTAAGGGATACTCCAACCC-GTTCTAACAAA-ATTTAA
* *
2341 ATTTACTTCGTGGAATTTTACTT
63 ATTTACTTTGTGGAATTTTA-TC
* ** * ** * *
2364 TTTGGGGAAACTCTATCCTTACTCCTTCTAAGGGATACTCCAACCCCACTCTAACAGAATTCAAA
1 TTTGGGGAAACTCCATCCCCACT-ATTCTAAGGGATACTCCAA-CCCGTTCTAACAAAATTTAAA
*
2429 TATT-CTTTTTTGGAATTTTATC
64 T-TTAC-TTTGTGGAATTTTATC
* * * *
2451 TTTAGGGAAACTCCATCCCCACTATTCTGAGGGGATACTCTAATCCCGTCCTAACAAAAATTTAA
1 TTTGGGGAAACTCCATCCCCACTATTCT-AAGGGATACTCCAA-CCCGTTCTAAC-AAAATTTAA
*
2516 ATTTATTTTGTGGAATTTTATC
63 ATTTACTTTGTGGAATTTTATC
* * *
2538 TTTGGGGAAACTCCATCCCCATTATTCCGAAGGGATACTCTAACCTCGTTC
1 TTTGGGGAAACTCCATCCCCACTATT-CTAAGGGATACTCCAACC-CGTTC
2589 CTCGTAAAAA
Statistics
Matches: 183, Mismatches: 32, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
86 6 0.03
87 116 0.63
88 58 0.32
89 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (84 bp):
TTTGGGGAAACTCCATCCCCACTATTCTAAGGGATACTCCAACCCGTTCTAACAAAATTTAAATT
TACTTTGTGGAATTTTATC
Found at i:4358 original size:20 final size:20
Alignment explanation
Indices: 4321--4360 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4311 AATGTTGTTT
* *
4321 AATGATGTAGATGAATATGA
1 AATGAGGTAAATGAATATGA
*
4341 AATGAGGTAAATGTATATGA
1 AATGAGGTAAATGAATATGA
4361 TAGCAAATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (20 bp):
AATGAGGTAAATGAATATGA
Found at i:11646 original size:13 final size:13
Alignment explanation
Indices: 11630--11656 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11620 CATAAGGACT
11630 AAATTGAATTAAA
1 AAATTGAATTAAA
11643 AAATTGAATTAAA
1 AAATTGAATTAAA
11656 A
1 A
11657 TCCCGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (13 bp):
AAATTGAATTAAA
Found at i:12178 original size:14 final size:14
Alignment explanation
Indices: 12159--12192 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
12149 CAAAAAATAA
12159 AAATAAA-ATGAAAT
1 AAATAAACAT-AAAT
12173 AAATAAACATAAAT
1 AAATAAACATAAAT
12187 AAATAA
1 AAATAA
12193 GAAAATGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (14 bp):
AAATAAACATAAAT
Found at i:15702 original size:22 final size:23
Alignment explanation
Indices: 15654--15702 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
15644 TTTTCTTTTT
*
15654 TTTTTTGGTTCAAGTTACTTAT-
1 TTTTTTGGTCCAAGTTACTTATA
* * *
15676 TTTTTTTGTCCAAGTTGCTTCTA
1 TTTTTTGGTCCAAGTTACTTATA
15699 TTTT
1 TTTT
15703 AAGTGTGGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.61
Consensus pattern (23 bp):
TTTTTTGGTCCAAGTTACTTATA
Found at i:16317 original size:38 final size:35
Alignment explanation
Indices: 16243--16344 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 35
16233 TTATGTTAAA
*
16243 TAAAAATTATATTATATTAAATAATAAAATAGATAT
1 TAAAAATTATATT-TATTAAATAATAAAATAAATAT
16279 TAAAAATTATATTTATTAAGTAATAATTAAAA-AAATAT
1 TAAAAATTATATTTATT-A--AATAA-TAAAATAAATAT
* *
16317 TGAAAA-TATTATTTATGTAAAAAATAAA
1 TAAAAATTA-TATTTAT-TAAATAATAAA
16345 GTTAATTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
35 8 0.14
36 18 0.32
37 2 0.04
38 23 0.40
39 6 0.11
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (35 bp):
TAAAAATTATATTTATTAAATAATAAAATAAATAT
Found at i:16365 original size:13 final size:13
Alignment explanation
Indices: 16347--16371 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16337 AAAATAAAGT
16347 TAATTAAATAAAA
1 TAATTAAATAAAA
16360 TAATTAAATAAA
1 TAATTAAATAAA
16372 TGGAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAATTAAATAAAA
Found at i:16828 original size:20 final size:20
Alignment explanation
Indices: 16787--16839 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
16777 TTCTACAATT
*
16787 TGTATGATACAAAGAGTAAA
1 TGTATGATACATAGAGTAAA
*
16807 TGTACTGATACATA-AGTGAA
1 TGTA-TGATACATAGAGTAAA
16827 TGTATCGATACAT
1 TGTAT-GATACAT
16840 GCCTAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 20 0.69
21 8 0.28
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (20 bp):
TGTATGATACATAGAGTAAA
Found at i:18615 original size:20 final size:20
Alignment explanation
Indices: 18549--18616 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
18539 GCCACTTTCG
18549 TGTATCGATACAATT-GAATA
1 TGTATCGATAC-ATTAGAATA
* *
18569 TGTATCGATACA-AAGCATGA
1 TGTATCGATACATTAGAAT-A
*
18589 TGCATCGATACATCTAG-ATA
1 TGTATCGATACAT-TAGAATA
18609 TGTATCGA
1 TGTATCGA
18617 CACTTTCAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
19 4 0.10
20 31 0.79
21 2 0.05
22 2 0.05
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATTAGAATA
Found at i:22503 original size:52 final size:52
Alignment explanation
Indices: 22418--22522 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
22408 ATATGAAAAG
* *
22418 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
22470 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
22522 T
1 T
22523 CGTCCCCACA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:23337 original size:49 final size:49
Alignment explanation
Indices: 23120--23821 Score: 818
Period size: 49 Copynumber: 14.8 Consensus size: 49
23110 GTGATAAAGA
* * * * * *
23120 TGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G--AAGG
* * *
23173 ATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
*
23226 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
23269 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
23318 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
23361 TGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
23410 TGCCAATATGTTGATTCAAGGCCAGCTATATTGGACTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
23453 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
23501 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
23550 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
23599 TGCCAATATGCTGATTCAAGGCCACCTATATTGGGCTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
23642 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATTAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
23691 TGCTAATATGCTGATTCAAGGCCAGCAATATTGGACTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* **
23734 TGCCAATGTGCTGATTCAAGGCTAGCTACGTTGGACTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
23783 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTA
23822 GAAGGATTGC
Statistics
Matches: 561, Mismatches: 56, Indels: 67
0.82 0.08 0.10
Matches are distributed among these distances:
43 192 0.34
45 4 0.01
47 5 0.01
48 48 0.09
49 236 0.42
52 34 0.06
53 7 0.01
54 35 0.06
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (49 bp):
TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
Found at i:23354 original size:92 final size:92
Alignment explanation
Indices: 23168--23826 Score: 1077
Period size: 92 Copynumber: 7.1 Consensus size: 92
23158 AAAGATGAGA
* *
23168 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
23233 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCTATATTGGACTT
23264 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
23329 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
23356 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGGTGCCAATATGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
23421 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
*
23448 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
23512 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
23539 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
* *
23604 ATATGCTGATTCAAGGCCACCTATATTGGGCTT
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
23637 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATTAAGGTGCTAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
23702 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
23729 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACGTTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
23794 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
23821 AGAAGG
1 A-AAGG
23827 ATTGCCACCG
Statistics
Matches: 531, Mismatches: 24, Indels: 19
0.93 0.04 0.03
Matches are distributed among these distances:
91 39 0.07
92 353 0.66
93 4 0.01
94 2 0.00
95 43 0.08
96 5 0.01
97 47 0.09
98 38 0.07
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:23632 original size:281 final size:277
Alignment explanation
Indices: 23168--23826 Score: 1079
Period size: 281 Copynumber: 2.4 Consensus size: 277
23158 AAAGATGAGA
* *
23168 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
*
23233 ATGCTGATTCAAGGCCAGCTATATTGGACTT-AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
62 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
* *
23297 CATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
127 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCACCTATATTGGACTTAAAGGT
*
23362 GCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGGTGCCAATATGTTGATTC
192 GCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
23427 AAGGCCAGCTATATTGGACTT
257 AAGGCCAGCAATATTGGACTT
*
23448 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
23512 TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
66 TGATTCAAGGCCAGCTATATTGGACTT--A-A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
*
23577 ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCACCTATATTGGGCTTAAAGG
126 ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCACCTATATTGGACTTAAAGG
* * *
23642 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATTAAGGTGCTAATATGCTGATT
191 TGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGGTGCCAATATGCTGATT
23707 CAAGGCCAGCAATATTGGACTT
256 CAAGGCCAGCAATATTGGACTT
* *
23729 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACGTTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
23794 TGATTCAAGGCCAGCTATATTGGGCTTAGAAGG
66 TGATTCAAGGCCAGCTATATTGGACTTAAAAGG
23827 ATTGCCACCG
Statistics
Matches: 355, Mismatches: 17, Indels: 17
0.91 0.04 0.04
Matches are distributed among these distances:
275 40 0.11
277 4 0.01
278 1 0.00
279 43 0.12
280 6 0.02
281 222 0.63
282 39 0.11
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (277 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTAAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATT
GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCACCTATATTGGACTTAAAGGTGCCA
ATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGG
CCAGCAATATTGGACTT
Found at i:23874 original size:33 final size:33
Alignment explanation
Indices: 23821--24045 Score: 361
Period size: 32 Copynumber: 6.9 Consensus size: 33
23811 TATTGGGCTT
*
23821 AGAAGGATTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
23854 AGAATGGTTGCCAACAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
23887 AG-AGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
23918 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
23951 AG-AGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
23982 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
24015 AAGAA-GGTTGCCATCGACTTGTGTGGGCTTT
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTT
24046 GAAAGAGGGT
Statistics
Matches: 179, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
31 6 0.03
32 109 0.61
33 60 0.34
34 4 0.02
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:24244 original size:34 final size:34
Alignment explanation
Indices: 24057--24639 Score: 515
Period size: 34 Copynumber: 17.2 Consensus size: 34
24047 AAAGAGGGTG
* * * *
24057 AAAGTTGCCACGAAGTTGTGGACAT-AAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
* * * **
24090 CAATGTGCCACGAAGTTGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAAGAA
* * **
24125 AAAGAGTGCCATGGAGTTGTGGGCTTTGAAAAG--
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAAAGAA
* **
24158 AAA-GTGCCACGGAGTCGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAAGAA
*
24192 AAACAGTGCCACGGAGTTGTGGACTTAAAAAAGAA
1 AAA-GGTGCCACGGAGTTGTGGACTTAAAAAAGAA
* * * **
24227 AAAGGCGCCACGAAGTTGT-AAGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGA-CTTAAAAAAGAA
**
24261 AAAGGTGCCACGGAGTTGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAAGAA
*
24296 AAAGAGTGCCACAGAGTTGTGGACTTAAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAAAGAA
* * * **
24331 AAAGGTGCCAAGCAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
* * **
24365 AAAGGTGCCATGGAGTTGTGGGCTTTGAAAAG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
** *
24397 -AAGGTGCCACGGAGTCATGGACTT-AAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
24429 CAAAGAGTGCCACGGAGTTGTGGACTTAAAAAAGAA
1 -AAAG-GTGCCACGGAGTTGTGGACTTAAAAAAGAA
* * **
24465 AAAGGTGACACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
* * **
24499 AAAGGTGCTACGGAGTTGTGGGCTTTGAAAAG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
* **
24531 -AAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAAGAA
*
24565 AAAGAGTGCCACAGAGTTGTGGACTTAAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAAAGAA
* **
24600 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
24634 AAAGGT
1 AAAGGT
24640 TCCATATCAT
Statistics
Matches: 449, Mismatches: 78, Indels: 45
0.78 0.14 0.08
Matches are distributed among these distances:
30 4 0.01
31 55 0.12
32 10 0.02
33 24 0.05
34 190 0.42
35 90 0.20
36 76 0.17
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (34 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAAGAA
Found at i:24467 original size:134 final size:135
Alignment explanation
Indices: 24160--24639 Score: 712
Period size: 134 Copynumber: 3.5 Consensus size: 135
24150 TTGAAAAGAA
* * ** * * **
24160 AGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAACAGTGCCACGGAGTTGTGGACTTAAAAAAG
1 AGTGCCACAGAGTTGTGGAC-TTAAAAAAGAAAAA-GGTGCCACGGAGTTGTGGGCTTTGAAAAG
* * ** *
24225 AAAAAGGCGCCACGAAGTTGTAAGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTAAA
64 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG---AAGGTGCCACGGAGTCGTGGACTTTAAA
24290 AGGGAAAAAG
126 AGGGAAAAAG
* *
24300 AGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCAAGCAGTTGTGGGCTTTGAAAAGAA
1 AGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* *
24365 AAAGGTGCCATGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCATGGAC-TTAAAA-GGA
66 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGA
24428 ACAAAG
131 A-AAAG
* *
24434 AGTGCCACGGAGTTGTGGACTTAAAAAAGAAAAAGGTGACACGGAGTTGTGGGCTTTGAAAAGAA
1 AGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
24499 AAAGGTGCTACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGA
66 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGA
24564 AAAAG
131 AAAAG
24569 AGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
24634 AAAGGT
66 AAAGGT
24640 TCCATATCAT
Statistics
Matches: 311, Mismatches: 26, Indels: 11
0.89 0.07 0.03
Matches are distributed among these distances:
133 4 0.01
134 122 0.39
135 99 0.32
136 4 0.01
138 52 0.17
139 12 0.04
140 18 0.06
ACGTcount: A:0.37, C:0.12, G:0.32, T:0.19
Consensus pattern (135 bp):
AGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGGGA
AAAAG
Found at i:24603 original size:101 final size:99
Alignment explanation
Indices: 24254--24633 Score: 325
Period size: 100 Copynumber: 3.8 Consensus size: 99
24244 GTAAGCTTTG
* * ** * *
24254 AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGA
1 AAAAGAAAAAGGTGACACAGAGTTGTGGAC-TTAAAAAAGAAAAAG-GTGCCACGGAGTTGTGGG
** * * * * **
24319 CTTAAAAAAGAAAAAGGTGCCAAGCAGTTGTGGGCTTTG
64 CTTTGAAAAG---AAGGTGCCACGGAGTCGTGGACTTAA
* ** * ** ** *
24358 AAAAGAAAAAGGTGCCATGGAGTTGTGGGCTTTGAAAAG---AAGGTGCCACGGAGTCATGGACT
1 AAAAGAAAAAGGTGACACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCT
** * *
24420 TAAAAGGAACAAAGAGTGCCACGGAGTTGTGGACTTAA
66 TTGAA--AA-GAAG-GTGCCACGGAGTCGTGGACTTAA
* * ** *
24458 AAAAGAAAAAGGTGACACGGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCTACGGAGTTGTGGGCT
1 AAAAGAAAAAGGTGACACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCT
24523 TTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAA
66 TTGAAAAGAAGGTGCCACGGAGTCGTGGAC-TTAA
** *
24558 AAGGGAAAAAGAGTGCCACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGC
1 AAAAGAAAAAG-GTGACACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGC
24623 TTTGAAAAGAA
65 TTTGAAAAGAA
24634 AAAGGTTCCA
Statistics
Matches: 234, Mismatches: 33, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
99 43 0.18
100 74 0.32
101 62 0.26
103 27 0.12
104 28 0.12
ACGTcount: A:0.37, C:0.12, G:0.32, T:0.19
Consensus pattern (99 bp):
AAAAGAAAAAGGTGACACAGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCT
TTGAAAAGAAGGTGCCACGGAGTCGTGGACTTAA
Found at i:25912 original size:13 final size:13
Alignment explanation
Indices: 25883--25921 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
25873 ATAGTAACCC
25883 ATGTATC-ATACA
1 ATGTATCGATACA
*
25895 TTGTATCGATACA
1 ATGTATCGATACA
*
25908 ATGTATTGATACA
1 ATGTATCGATACA
25921 A
1 A
25922 AGAACATTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:41449 original size:11 final size:11
Alignment explanation
Indices: 41433--41470 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
41423 CGTCAAGATT
41433 AACATAAAAGA
1 AACATAAAAGA
41444 AACATAAAAGA
1 AACATAAAAGA
41455 AACATAAAAGA
1 AACATAAAAGA
41466 AACAT
1 AACAT
41471 GTTAATACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.71, C:0.11, G:0.08, T:0.11
Consensus pattern (11 bp):
AACATAAAAGA
Found at i:43947 original size:52 final size:52
Alignment explanation
Indices: 43877--44017 Score: 230
Period size: 52 Copynumber: 2.7 Consensus size: 52
43867 GAAAATTTAT
43877 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
43929 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
**
43981 CTGCATGTATCGATACA-AAAATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACA
44018 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:44024 original size:13 final size:13
Alignment explanation
Indices: 44006--44030 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43996 CAAAAATCAG
44006 TGTATCGATACAA
1 TGTATCGATACAA
44019 TGTATCGATACA
1 TGTATCGATACA
44031 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:44114 original size:13 final size:13
Alignment explanation
Indices: 44096--44120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44086 CAAAAAAATA
44096 TGTATCGATACAT
1 TGTATCGATACAT
44109 TGTATCGATACA
1 TGTATCGATACA
44121 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44116 original size:33 final size:33
Alignment explanation
Indices: 44074--44140 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
44064 AGTAGCTTAA
44074 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
44107 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
44140 A
1 A
44141 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:44219 original size:21 final size:21
Alignment explanation
Indices: 44178--44219 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
44168 GTTGGGACCT
*
44178 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
44199 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
44220 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:45149 original size:49 final size:49
Alignment explanation
Indices: 45007--46151 Score: 1519
Period size: 49 Copynumber: 23.5 Consensus size: 49
44997 GATGTCAACG
* * *
45007 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATA
*
45059 TGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45102 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45151 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* * *
45194 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45243 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45292 TGCTGAGTCAAGGCCAGCTATATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45341 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45390 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATA
*
45442 TGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45485 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45534 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* * *
45577 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* * *
45626 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTTCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* * * *
45675 TGCTGAGTCAAGGCCAGCTACATTGGACTTGAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45724 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45773 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATA
*
45825 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45874 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATA
* *
45926 TGCTGATTCAAGGCCAGCTATATTGGGCTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
45975 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATA
* *
46027 TGCTGATTCAAGGCCAGCTATATTGGGCTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
* *
46076 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATA
46128 TGCTGATTCAAGGCCAGCTATATT
1 TGCTGATTCAAGGCCAGCTATATT
46152 TGGCTTAGAG
Statistics
Matches: 959, Mismatches: 95, Indels: 78
0.85 0.08 0.07
Matches are distributed among these distances:
43 153 0.16
45 2 0.00
47 4 0.00
48 2 0.00
49 557 0.58
50 5 0.01
51 3 0.00
52 233 0.24
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATA
Found at i:45645 original size:383 final size:383
Alignment explanation
Indices: 44940--46151 Score: 1983
Period size: 383 Copynumber: 3.1 Consensus size: 383
44930 AAAAGTGATA
* * * * * *
44940 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTCAA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G---AAGG-TGCCAA
* * * *
45005 CGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAA
60 TGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAA
45070 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
125 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
45135 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGA
190 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGA
45200 GTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
255 GTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATA
*
45265 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTATATTGGACTTAAAGATG
320 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45329 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
45394 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAG
45459 CTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
131 CTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
45524 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAG
196 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAG
45589 GCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
261 GCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
45654 TTAAAGATGAAGGTTCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTGAAGATG
326 TTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45712 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
45777 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAG
*
45842 CTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
131 CTATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
45907 GATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAAGATGAAGGTGCCA
190 GAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCA
*
45972 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCA
246 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATATGCTGATTCA
* *
46037 AGGCCAGCTATATTGGGCTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGG
308 AGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGG
46102 ACTTAAAGATGG
373 ACTTAAAGAT-G
* *
46114 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATT
46152 TGGCTTAGAG
Statistics
Matches: 778, Mismatches: 24, Indels: 27
0.94 0.03 0.03
Matches are distributed among these distances:
383 465 0.60
384 4 0.01
387 2 0.00
389 90 0.12
390 1 0.00
392 39 0.05
396 1 0.00
398 48 0.06
399 1 0.00
401 92 0.12
402 1 0.00
404 34 0.04
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (383 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAG
CTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAG
GCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
TTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:46158 original size:101 final size:98
Alignment explanation
Indices: 44940--46151 Score: 1788
Period size: 101 Copynumber: 12.4 Consensus size: 98
44930 AAAAGTGATA
* * * * * *
44940 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTCAA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G---AAGG-TGCCAA
* * *
45005 CGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG
60 TGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
45045 AAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTG
1 AAGA--TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
*
45104 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45139 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
45198 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45231 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
45296 GAGTCAAGGCCAGCTATATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45329 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
45394 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
45428 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTG
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
*
45487 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45522 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
45581 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
45614 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTTCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
45679 GAGTCAAGGCCAGCTACATTGGACTTGAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
45712 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
45777 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
45811 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTG
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
45876 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* * *
45912 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAAGATGAAGGTGCCAATGTG
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
45977 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* * *
46013 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAAGATGAAGGTGCCAATGTG
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
46078 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
46114 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATT
46152 TGGCTTAGAG
Statistics
Matches: 1059, Mismatches: 28, Indels: 44
0.94 0.02 0.04
Matches are distributed among these distances:
92 259 0.24
94 5 0.00
95 88 0.08
96 6 0.01
97 1 0.00
98 286 0.27
99 2 0.00
101 376 0.36
103 1 0.00
105 3 0.00
107 32 0.03
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:46259 original size:32 final size:33
Alignment explanation
Indices: 46163--46255 Score: 163
Period size: 33 Copynumber: 2.8 Consensus size: 33
46153 GGCTTAGAGG
46163 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
46196 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A
1 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
46229 -GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCGACTTGTGTGGGCTTTGG
46256 GAAGGAAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 25 0.42
33 27 0.46
34 5 0.08
ACGTcount: A:0.15, C:0.19, G:0.37, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:46303 original size:34 final size:34
Alignment explanation
Indices: 46263--46982 Score: 414
Period size: 34 Copynumber: 20.7 Consensus size: 34
46253 TGGGAAGGAA
*
46263 AAAAAGATGCCACGGAGTTGTGGACTTAAAAGGG
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAAAGGG
*
46297 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GA
1 AAAAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGG
46332 AAAAAG-TGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGG
* *
46367 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACGG
1 AAAAAGA-TGCCACGGAGTTGTGGGCTTAAAAGGG
*
46402 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGG
1 AAAAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGG
* ** * * *
46438 AAAGAGAGTGCCACAAAGTCGTAGGTGC-CACAGAGTTGTGGG
1 AAAAAGA-TGCCACGGAGTTGT-GG-GCTTA-A-A----AGGG
* *
46480 CTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGA
1 ----AAAA-----AGATGCCACGGAGTTGTGGGC-TT-AAAAGGG
**
46525 AAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAA--G
1 AAAAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGG
* *
46559 AAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--G
1 AAAAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGG
* * * *
46593 AAGAAGGTTGCCACCGACTTGTGTGGGCTTTAAGAAGGG
1 AA-AAAGATGCCACGGA-GT-TGTGGGC-TTAA-AAGGG
* * *
46632 AGAAAGATGCCATGGAGTTGTGGACTTAAAAGGG
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAAAGGG
*
46666 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GA
1 AAAAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGGG
46701 AAAAAG-TGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGATGCCACGGAGTTGTGGGC-TT-AAAAGGG
* **
46736 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
1 AAAAAGA-TGCCACGGAGTTGTGGGCTTAAAAGGG
* * * *
46771 AAAAAGGTGCCACGGAGTTGTGGACTTAAAGATGA
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAA-AGGG
*
46806 AAAAAG-TGCCACGGAATTGTGGGCTTTAAAA-GG
1 AAAAAGATGCCACGGAGTTGTGGGC-TTAAAAGGG
* * *
46839 -----G-TGCCACGGAGTTGTGGACTTAAAGATGA
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAA-AGGG
* *
46868 AAAAAG-TGCCACGGAATTGTGGGCTTTAAA--G
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAAAGGG
* * * * *
46899 AAAAA-ATGCCACTGAGTCGTGGACTT---TGAG
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAAAGGG
* * * *
46929 ACAAA-ATGCCACTGAGTTGTGGACTTTAAA--G
1 AAAAAGATGCCACGGAGTTGTGGGCTTAAAAGGG
* *
46960 AAAAAGATGCCACTGAGTCGTGG
1 AAAAAGATGCCACGGAGTTGTGG
46983 ACTTTGAGCA
Statistics
Matches: 550, Mismatches: 77, Indels: 120
0.74 0.10 0.16
Matches are distributed among these distances:
27 5 0.01
28 18 0.03
29 1 0.00
30 25 0.05
31 26 0.05
32 16 0.03
33 63 0.11
34 115 0.21
35 110 0.20
36 42 0.08
37 80 0.15
38 13 0.02
39 4 0.01
41 4 0.01
42 3 0.01
45 2 0.00
46 3 0.01
48 2 0.00
49 3 0.01
50 12 0.02
51 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.21
Consensus pattern (34 bp):
AAAAAGATGCCACGGAGTTGTGGGCTTAAAAGGG
Found at i:46373 original size:70 final size:70
Alignment explanation
Indices: 46262--46989 Score: 449
Period size: 71 Copynumber: 10.4 Consensus size: 70
46252 TTGGGAAGGA
46262 AAAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAAAG-TGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
46325 TAAAAG
65 TAAAAG
*
46331 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
*
46396 AAACGG
66 AAA-AG
* * * * ** *
46402 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTCGTAGGTGCC
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGT-GG-G--
*****
46467 ACAGAGTTGTGGGCT
62 -C----TT-TAAAAG
** *** * * **** * **** ** **
46482 TTAAAAG-AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGTTG
1 AAAAAAGTGCCACGGAGTTGTGGACTT-T--GAAAAGGGAA-----AAAGAGTGCCACGGAGTTG
46546 TGGGCTTTAAAAG
58 TGGGCTTTAAAAG
* * * * * *
46559 AAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAG-GTTGCCACCGACTTGTGTGGGC
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAG-TGCCACGGA-GT-TGTGGGC
46621 TTTAAGAAGG
63 TTTAA-AA-G
* * *
46631 GAGAAAGATGCCATGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAAAG-TGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
46694 TAAAAG
65 TAAAAG
*
46700 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
46765 AAACAG
66 AAA-AG
* * *
46771 AAAAAGGTGCCACGGAGTTGTGGAC-TT--AAAGATGAAAAA-AGTGCCACGGAATTGTGGGCTT
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTT
46832 TAAAAG
65 TAAAAG
* * *
46838 -----GGTGCCACGGAGTTGTGGAC-TT--AAAGATGAAAAA-AGTGCCACGGAATTGTGGGCTT
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAG-GGAAAAAGAGTGCCACGGAGTTGTGGGCTT
46894 T-AAAG
65 TAAAAG
* * * * *
46899 AAAAAA-TGCCACTGAGTCGTGGACTTTG---A--GACAAA-A-TGCCACTGAGTTGTGGACTTT
1 AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
46956 -AAAG
66 AAAAG
* *
46960 -AAAAAGATGCCACTGAGTCGTGGACTTTGA
1 AAAAAAG-TGCCACGGAGTTGTGGACTTTGA
46990 GCAGAGATTG
Statistics
Matches: 527, Mismatches: 87, Indels: 96
0.74 0.12 0.14
Matches are distributed among these distances:
60 5 0.01
61 26 0.05
62 85 0.16
65 17 0.03
66 2 0.00
67 3 0.01
68 72 0.14
69 24 0.05
70 94 0.18
71 96 0.18
72 11 0.02
73 33 0.06
74 1 0.00
75 1 0.00
76 1 0.00
77 5 0.01
78 10 0.02
79 8 0.02
80 7 0.01
81 1 0.00
82 4 0.01
85 1 0.00
86 2 0.00
87 18 0.03
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (70 bp):
AAAAAAGTGCCACGGAGTTGTGGACTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
AAAAG
Found at i:46522 original size:87 final size:88
Alignment explanation
Indices: 46374--46543 Score: 288
Period size: 87 Copynumber: 1.9 Consensus size: 88
46364 GGGAAAAAGA
* * *
46374 GTGCCACGGAGTTGTGGGCTTTAAACGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
*
46439 AAGAGAGTGCCACAAAGTCGTAG
66 AAAAGAGTGCCACAAAGTCGTAG
*
46462 GTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
46526 AAAAGAGTGCCACAAAGT
66 AAAAGAGTGCCACAAAGT
46544 TGTGGGCTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 53 0.69
88 24 0.31
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.19
Consensus pattern (88 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
AAAAGAGTGCCACAAAGTCGTAG
Found at i:46733 original size:62 final size:62
Alignment explanation
Indices: 46526--46989 Score: 282
Period size: 62 Copynumber: 7.0 Consensus size: 62
46516 TGAAAAGGAA
** * * *
46526 AAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTG
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTTG
* * * * *
46588 AAAAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAAGAAGGGAGAAAGATGCCATGGAGTTGT
1 --AA-AAG-A-G-TGCCACGGA-GT-TGTGGGCTTTAA-AA-GAAAAAAG-TGCCACGGAGTTGT
*
46653 GGACTTAAAAGGG
55 GGACTT-----TG
*
46666 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAA
1 -AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTT---
46731 AAGGG
62 ----G
*
46736 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
1 -AAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AGAAAAAAGTGCCACGGAGTTGTGGACTT---
46801 GATG
61 --TG
* * *
46805 AAAAAAGTGCCACGGAATTGTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGACTTAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTT-----
46865 TG
61 TG
* * * *
46867 AAAAAAGTGCCACGGAATTGTGGGCTTT-AAAGAAAAAA-TGCCACTGAGTCGTGGACTTTG
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTTG
* * * * *
46927 AGACAA-AATGCCACTGAGTTGTGGACTTT-AAAG-AAAAAGATGCCACTGAGTCGTGGACTTTG
1 A-A-AAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAG-TGCCACGGAGTTGTGGACTTTG
46989 A
1 A
46990 GCAGAGATTG
Statistics
Matches: 338, Mismatches: 26, Indels: 74
0.77 0.06 0.17
Matches are distributed among these distances:
60 8 0.02
61 28 0.08
62 82 0.24
64 2 0.01
65 21 0.06
66 1 0.00
67 3 0.01
68 54 0.16
69 8 0.02
70 47 0.14
71 41 0.12
72 7 0.02
73 26 0.08
74 1 0.00
75 1 0.00
76 4 0.01
77 3 0.01
78 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (62 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTTG
Found at i:46845 original size:28 final size:28
Alignment explanation
Indices: 46805--46897 Score: 96
Period size: 28 Copynumber: 3.1 Consensus size: 28
46795 CTTAAAGATG
46805 AAAAAAGTGCCACGGAATTGTGGGCTTT
1 AAAAAAGTGCCACGGAATTGTGGGCTTT
** * *
46833 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGAT
1 AAAAAAGTGCCACGGAATTGTGGGCTT-----T
46866 GAAAAAAGTGCCACGGAATTGTGGGCTTT
1 -AAAAAAGTGCCACGGAATTGTGGGCTTT
46895 AAA
1 AAA
46898 GAAAAAATGC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
28 26 0.51
29 1 0.02
33 1 0.02
34 23 0.45
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (28 bp):
AAAAAAGTGCCACGGAATTGTGGGCTTT
Found at i:46936 original size:30 final size:30
Alignment explanation
Indices: 46901--47018 Score: 157
Period size: 31 Copynumber: 3.8 Consensus size: 30
46891 CTTTAAAGAA
46901 AAAATGCCACTGAGTCGTGGACTTTGAGAC
1 AAAATGCCACTGAGTCGTGGACTTTGAGAC
* * *
46931 AAAATGCCACTGAGTTGTGGACTTTAAAGAA
1 AAAATGCCACTGAGTCGTGGACTTT-GAGAC
46962 AAAGATGCCACTGAGTCGTGGACTTTGAG-C
1 AAA-ATGCCACTGAGTCGTGGACTTTGAGAC
*
46992 AGAGATTGCCACTGAGTCGTGGACTTT
1 A-A-AATGCCACTGAGTCGTGGACTTT
47019 TTTTTTTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
30 25 0.32
31 30 0.39
32 22 0.29
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (30 bp):
AAAATGCCACTGAGTCGTGGACTTTGAGAC
Found at i:46948 original size:369 final size:369
Alignment explanation
Indices: 46224--46955 Score: 1013
Period size: 369 Copynumber: 2.0 Consensus size: 369
46214 TGGGCTTTAG
**
46224 GAAGAGTTGCCACCGACTTGTGTGGGCTTTGGGAAGGAAAAAAAGATGCCACGGAGTTGTGGACT
1 GAAGAGTTGCCACCGACTTGTGTGGGCTTTAAGAAGGAAAAAAAGATGCCACGGAGTTGTGGACT
46289 TAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGG
66 TAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGG
*
46354 GCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACGGAAAAAGGTGCCACGGAG
131 GCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAG
* * *
46419 TTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTCGTAGGTGCCACAGAGTTGTGGGCTTT
196 TTGTGGACTTTAAAAAGGGAAAGAAAGTGCCACAAAGTCGTAGGTGCCACAGAGTTGTGGACTTT
* * *
46484 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGG
261 AAAAGAAAAAAGTGCCACGGAATTGTGGGCTTT-AAAAGGAAAAAAGAGTGCCACAAAGTCGTGG
* * *
46549 GCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
325 ACTTTAAAACAAGAA-GTGCCACGGAGTTGTGGACTTTGAAAAGAA
* * *
46595 GAAG-GTTGCCACCGACTTGTGTGGGCTTTAAGAAGG-GAGAAAGATGCCATGGAGTTGTGGACT
1 GAAGAGTTGCCACCGACTTGTGTGGGCTTTAAGAAGGAAAAAAAGATGCCACGGAGTTGTGGACT
46658 TAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGG
66 TAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGG
46723 GCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAG
131 GCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAG
* * * * *
46788 TTGTGGAC-TTAAAGA-TGAAA-AAAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAG
196 TTGTGGACTTTAAAAAGGGAAAGAAAGTGCCAC--AA-AGT---C-GT---A-GGTGCCACAGAG
46850 TTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT-AAA-G-AAAAA-A-TGCC
250 TTGTGGACTTTAAA-A-GAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGAAAAAAGAGTGCC
** * * *
46909 ACTGAGTCGTGGACTTTGAGACAA-AA-TGCCACTGAGTTGTGGACTTT
313 ACAAAGTCGTGGACTTTAAAACAAGAAGTGCCACGGAGTTGTGGACTTT
46956 AAAGAAAAAG
Statistics
Matches: 323, Mismatches: 25, Indels: 28
0.86 0.07 0.07
Matches are distributed among these distances:
366 9 0.03
367 4 0.01
368 8 0.02
369 181 0.56
370 30 0.09
371 6 0.02
372 22 0.07
373 2 0.01
374 5 0.02
375 1 0.00
376 9 0.03
377 19 0.06
378 27 0.08
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (369 bp):
GAAGAGTTGCCACCGACTTGTGTGGGCTTTAAGAAGGAAAAAAAGATGCCACGGAGTTGTGGACT
TAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGG
GCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAG
TTGTGGACTTTAAAAAGGGAAAGAAAGTGCCACAAAGTCGTAGGTGCCACAGAGTTGTGGACTTT
AAAAGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGAAAAAAGAGTGCCACAAAGTCGTGGA
CTTTAAAACAAGAAGTGCCACGGAGTTGTGGACTTTGAAAAGAA
Found at i:46958 original size:96 final size:95
Alignment explanation
Indices: 46674--46987 Score: 209
Period size: 96 Copynumber: 3.2 Consensus size: 95
46664 GGAAAAAGAG
*
46674 TGCCACGGAGTTGTGGGCTTTAAA-AGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 TGCCACGGAGTTGTGGACTTTAAAGAGAAAAAAGTGCCACGGAGTTGTGGGCTTT--AAA--GAA
*
46738 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAA
62 AAA-AGTGCCACGGAGTTGTGGGCTTT---GAGAAAAA
*
46776 GGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTT----AAA
1 --TGCCACGGAGTTGTGGACTTTAAAGA-GAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGAAA
** * *
46836 AGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAA
63 AAAGTGCCACGGAGTTGTGGGCTT--TGA-G-AAAAA
* * * * * * *
46873 GTGCCACGGAATTGTGGGCTTT-AA-AGAAAAAA-TGCCACTGAGTCGTGGACTTT-GAGACAAA
1 -TGCCACGGAGTTGTGGACTTTAAAGAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGAAAAA
* * *
46934 A-TGCCACTGAGTTGTGGACTTTAAAGAAAAAGA
65 AGTGCCACGGAGTTGTGGGCTTT-GAG-AAAA-A
* *
46967 TGCCACTGAGTCGTGGACTTT
1 TGCCACGGAGTTGTGGACTTT
46988 GAGCAGAGAT
Statistics
Matches: 175, Mismatches: 23, Indels: 35
0.75 0.10 0.15
Matches are distributed among these distances:
93 40 0.23
94 9 0.05
95 21 0.12
96 43 0.25
97 11 0.06
103 5 0.03
104 18 0.10
105 28 0.16
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (95 bp):
TGCCACGGAGTTGTGGACTTTAAAGAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGAAAAAA
GTGCCACGGAGTTGTGGGCTTTGAGAAAAA
Found at i:46990 original size:62 final size:60
Alignment explanation
Indices: 46869--47018 Score: 210
Period size: 62 Copynumber: 2.4 Consensus size: 60
46859 TAAAGATGAA
* * *
46869 AAAAGTGCCACGGAATTGTGGGCTTTAAAGAAAAAATGCCACTGAGTCGTGGACTTTGAGAC
1 AAAA-TGCCACTGAGTTGTGGACTTTAAAGAAAAAATGCCACTGAGTCGTGGACTTTGAG-C
46931 AAAATGCCACTGAGTTGTGGACTTTAAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGC
1 AAAATGCCACTGAGTTGTGGACTTTAAAGAAAAA-ATGCCACTGAGTCGTGGACTTTGAGC
* *
46992 AGAGATTGCCACTGAGTCGTGGACTTT
1 A-A-AATGCCACTGAGTTGTGGACTTT
47019 TTTTTTTTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
61 29 0.36
62 30 0.38
63 21 0.26
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (60 bp):
AAAATGCCACTGAGTTGTGGACTTTAAAGAAAAAATGCCACTGAGTCGTGGACTTTGAGC
Found at i:47022 original size:1 final size:1
Alignment explanation
Indices: 47016--47044 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
47006 AGTCGTGGAC
47016 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
47045 AAAAAAAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:48016 original size:17 final size:16
Alignment explanation
Indices: 47984--48014 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47974 TTCCTCTCTT
*
47984 TTTTTTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
48000 TTTTGTTTCTTTTTT
1 TTTTGTTTCTTTTTT
48015 TGGAAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.87
Consensus pattern (16 bp):
TTTTGTTTCTTTTTTG
Found at i:52777 original size:11 final size:11
Alignment explanation
Indices: 52761--52787 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
52751 CGTCAAGATT
52761 AACATAAAAGA
1 AACATAAAAGA
52772 AACATAAAAGA
1 AACATAAAAGA
52783 AACAT
1 AACAT
52788 GTTAATACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.11
Consensus pattern (11 bp):
AACATAAAAGA
Found at i:55264 original size:52 final size:52
Alignment explanation
Indices: 55194--55334 Score: 230
Period size: 52 Copynumber: 2.7 Consensus size: 52
55184 GAAAATTTAT
55194 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
55246 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
**
55298 CTGCATGTATCGATACA-AAAATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACA
55335 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:55341 original size:13 final size:13
Alignment explanation
Indices: 55323--55347 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55313 CAAAAATCAG
55323 TGTATCGATACAA
1 TGTATCGATACAA
55336 TGTATCGATACA
1 TGTATCGATACA
55348 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:55431 original size:13 final size:13
Alignment explanation
Indices: 55413--55437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55403 CAAAAAAATA
55413 TGTATCGATACAT
1 TGTATCGATACAT
55426 TGTATCGATACA
1 TGTATCGATACA
55438 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55433 original size:33 final size:33
Alignment explanation
Indices: 55391--55457 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
55381 AGTAGCTTAA
55391 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
55424 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
55457 A
1 A
55458 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:55536 original size:21 final size:21
Alignment explanation
Indices: 55495--55536 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
55485 GTTGGGACCT
*
55495 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
55516 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
55537 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:56127 original size:9 final size:9
Alignment explanation
Indices: 56115--56148 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
56105 GCAAAAAAAA
56115 AAAAAACAG
1 AAAAAACAG
*
56124 AAAAAAAAG
1 AAAAAACAG
56133 AAAAAAACAG
1 -AAAAAACAG
56143 AAAAAA
1 AAAAAA
56149 AAACAACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAACAG
Found at i:56127 original size:10 final size:10
Alignment explanation
Indices: 56114--56149 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
56104 CGCAAAAAAA
56114 AAAAAAACAG
1 AAAAAAACAG
56124 AAAAAAA-AG
1 AAAAAAACAG
56133 AAAAAAACAG
1 AAAAAAACAG
56143 AAAAAAA
1 AAAAAAA
56150 AACAACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.86, C:0.06, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAACAG
Found at i:56130 original size:20 final size:19
Alignment explanation
Indices: 56107--56151 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
56097 CGTCCGTCGC
56107 AAAAAAAAAAAAAACAGAA
1 AAAAAAAAAAAAAACAGAA
*
56126 AAAAAAGAAAAAAACAGAA
1 AAAAAAAAAAAAAACAGAA
56145 AAAAAAA
1 AAAAAAA
56152 CAACAACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAAACAGAA
Found at i:57651 original size:28 final size:29
Alignment explanation
Indices: 57603--57663 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
57593 AGACATTCCT
* *
57603 CACCCTTTTCAAAAGTCCACAACTCTGTGG
1 CACCCTTTT-AAAAGCCCACAACTCCGTGG
*
57633 CACCCTTTT-AAAGCCCACAATTCCGTGG
1 CACCCTTTTAAAAGCCCACAACTCCGTGG
57661 CAC
1 CAC
57664 TATTTTTCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 19 0.68
30 9 0.32
ACGTcount: A:0.26, C:0.36, G:0.13, T:0.25
Consensus pattern (29 bp):
CACCCTTTTAAAAGCCCACAACTCCGTGG
Found at i:57669 original size:28 final size:28
Alignment explanation
Indices: 57614--57669 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
57604 ACCCTTTTCA
* * *
57614 AAAGTCCACAACTCTGTGGCACCCTTTT
1 AAAGCCCACAACTCCGTGGCACCATTTT
* *
57642 AAAGCCCACAATTCCGTGGCACTATTTT
1 AAAGCCCACAACTCCGTGGCACCATTTT
57670 TCCTTTTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (28 bp):
AAAGCCCACAACTCCGTGGCACCATTTT
Found at i:57684 original size:34 final size:33
Alignment explanation
Indices: 57636--58060 Score: 382
Period size: 34 Copynumber: 13.1 Consensus size: 33
57626 TCTGTGGCAC
* *
57636 CCTTTTAAAGCCCACAATTCCGTGGCACTATTTTT
1 CCTTTT-AAGCCCACAACTCCGTGGCAC-CTTTTT
*
57671 CCTTTTAAGCCCACGACTCCGTGGCACCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCTTTTT
* *
57704 CTTTTCTAAGTCCACAACTCCGTGGCACTCTTTTT
1 CCTTT-TAAGCCCACAACTCCGTGGCAC-CTTTTT
*
57739 CCTTTTAAGCCCATAACTCCGTGGCACCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCTTTTT
* * *
57772 CTTTTCTAAGTCCACGACTCCGTGGCACCTTTTT
1 CCTTT-TAAGCCCACAACTCCGTGGCACCTTTTT
* * *
57806 CTTTTCTAAGTCCATAACTCCGTGGCA-C-----
1 CCTTT-TAAGCCCACAACTCCGTGGCACCTTTTT
*
57834 CCTTTTAAGCCCACAACTTCGTGGCACTCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCAC-CTTTTT
* * *
57868 CCTTCTAAGTCCACAACTCTGTGGCA-C-----
1 CCTTTTAAGCCCACAACTCCGTGGCACCTTTTT
* *
57895 CCTTTTAAAGCCCACAATTCCATGGCACTCTTTTT
1 CCTTTT-AAGCCCACAACTCCGTGGCAC-CTTTTT
* *
57930 CCTTTTAAGCCCACGACTCTGTGGCACCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCTTTTT
* * *
57963 CTTTTCTAAGTCCACAACTCCGTGCCA-C-----
1 CCTTT-TAAGCCCACAACTCCGTGGCACCTTTTT
*
57991 CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCAC-CTTTTT
* *
58025 CCTTCTAAGTCCACAACTCCGTGGCACCTTCTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCTT-TTT
58059 CC
1 CC
58061 AAAGCCCACA
Statistics
Matches: 321, Mismatches: 42, Indels: 55
0.77 0.10 0.13
Matches are distributed among these distances:
27 43 0.13
28 24 0.07
29 2 0.01
30 1 0.00
32 1 0.00
33 34 0.11
34 194 0.60
35 22 0.07
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.35
Consensus pattern (33 bp):
CCTTTTAAGCCCACAACTCCGTGGCACCTTTTT
Found at i:57727 original size:68 final size:68
Alignment explanation
Indices: 57647--58060 Score: 442
Period size: 68 Copynumber: 6.4 Consensus size: 68
57637 CTTTTAAAGC
* * *
57647 CCACAATTCCGTGGCACTATTTTTCCTTTTAAGCCCACGACTCCGTGGCACCTTTTTCTTTTCTA
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCTA
57712 AGT
66 AGT
*
57715 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCATAACTCCGTGGCACCTTTTTCTTTTCTA
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCTA
57780 AGT
66 AGT
* * * *
57783 CCACGACTCCGTGGCAC-CTTTTTCTTTTCTAAGTCCATAACTCCGTGGCACC-----C-TTT-T
1 CCACAACTCCGTGGCACTCTTTTTCCTTT-TAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCT
*
57840 AAGC
65 AAGT
* * * * *
57844 CCACAACTTCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACC-----CTTTT-AA
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCTA
*
57903 AGC
66 AGT
* * * *
57906 CCACAATTCCATGGCACTCTTTTTCCTTTTAAGCCCACGACTCTGTGGCACCTTTTTCTTTTCTA
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCTA
57971 AGT
66 AGT
* * *
57974 CCACAACTCCGT-GC-CAC-----CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTC-CTTCT
1 CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTCT
58031 AAGT
65 AAGT
58035 CCACAACTCCGTGGCAC-CTTCTTTCC
1 CCACAACTCCGTGGCACTCTT-TTTCC
58061 AAAGCCCACA
Statistics
Matches: 298, Mismatches: 30, Indels: 36
0.82 0.08 0.10
Matches are distributed among these distances:
61 85 0.29
62 75 0.25
63 2 0.01
66 2 0.01
67 17 0.06
68 117 0.39
ACGTcount: A:0.18, C:0.35, G:0.12, T:0.35
Consensus pattern (68 bp):
CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCTA
AGT
Found at i:57973 original size:157 final size:157
Alignment explanation
Indices: 57671--58070 Score: 545
Period size: 157 Copynumber: 2.5 Consensus size: 157
57661 CACTATTTTT
* *
57671 CCTTTTAAGCCCACGACTCCGTGGCAC-CTTTTTCTTTTCTAAGTCCACAACTCCGTGGCACTCT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTC-CTTCTAAGTCCACAACTCCGTGGCA--C-
* * * *
57735 TTTTCCTTTT-AAGCCCATAACTCCGTGGCACCTTTTTCTTTTCTAAGTCCACGACTCCGTGGCA
62 ----CCTTTTAAAGCCCACAACTCCATGGCACCTTTTTCCTTTCTAAGCCCACGACTCCGTGGCA
* *
57799 CCTTTTTCTTTTCTAAGTCCATAACTCCGTGGCAC
123 CCTTTTTCTTTTCTAAGTCCACAACTCCGTGCCAC
* *
57834 CCTTTTAAGCCCACAACTTCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTT
* *
57899 TTAAAGCCCACAATTCCATGGCACTCTTTTTCCTTT-TAAGCCCACGACTCTGTGGCACCTTTTT
66 TTAAAGCCCACAACTCCATGGCAC-CTTTTTCCTTTCTAAGCCCACGACTCCGTGGCACCTTTTT
57963 CTTTTCTAAGTCCACAACTCCGTGCCAC
130 CTTTTCTAAGTCCACAACTCCGTGCCAC
*
57991 CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTC
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACC--C
*
58056 TTTCCAAAGCCCACA
64 TTT-TAAAGCCCACA
58071 CAAGTCGGTG
Statistics
Matches: 215, Mismatches: 16, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
156 6 0.03
157 129 0.60
158 10 0.05
159 4 0.02
160 10 0.05
161 1 0.00
163 48 0.22
164 7 0.03
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (157 bp):
CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTT
TTAAAGCCCACAACTCCATGGCACCTTTTTCCTTTCTAAGCCCACGACTCCGTGGCACCTTTTTC
TTTTCTAAGTCCACAACTCCGTGCCAC
Found at i:58073 original size:33 final size:32
Alignment explanation
Indices: 58036--58148 Score: 138
Period size: 33 Copynumber: 3.5 Consensus size: 32
58026 CTTCTAAGTC
* *
58036 CACAACTCCGTGGCACCTTCTTTCCAAAGCCCA
1 CACAAGTCGGTGGCACC-TCTTTCCAAAGCCCA
*
58069 CACAAGTCGGTGGCAACTC-TTCCTAAAGCCCA
1 CACAAGTCGGTGGCACCTCTTTCC-AAAGCCCA
* * *
58101 CACAAGTCGGTGGCAACCACTCTCTAAAGCCCA
1 CACAAGTCGGTGGC-ACCTCTTTCCAAAGCCCA
58134 CACAAGTCGGTGGCA
1 CACAAGTCGGTGGCA
58149 ACCCTTCTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
31 4 0.06
32 25 0.36
33 39 0.56
34 2 0.03
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (32 bp):
CACAAGTCGGTGGCACCTCTTTCCAAAGCCCA
Found at i:58102 original size:32 final size:31
Alignment explanation
Indices: 58057--58163 Score: 148
Period size: 32 Copynumber: 3.4 Consensus size: 31
58047 GGCACCTTCT
58057 TTCC-AAAGCCCACACAAGTCGGTGGCAACTC
1 TTCCTAAAGCCCACACAAGTCGGTGGCAAC-C
58088 TTCCTAAAGCCCACACAAGTCGGTGGCAACC
1 TTCCTAAAGCCCACACAAGTCGGTGGCAACC
*
58119 ACTCTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 -TTC-CTAAAGCCCACACAAGTCGGTGGCAA-CC
58153 TT-CT-AAGCCCA
1 TTCCTAAAGCCCA
58164 ATATAGCTGG
Statistics
Matches: 70, Mismatches: 2, Indels: 9
0.86 0.02 0.11
Matches are distributed among these distances:
30 7 0.10
31 7 0.10
32 27 0.39
33 27 0.39
34 2 0.03
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.17
Consensus pattern (31 bp):
TTCCTAAAGCCCACACAAGTCGGTGGCAACC
Found at i:58105 original size:65 final size:63
Alignment explanation
Indices: 58036--58163 Score: 168
Period size: 65 Copynumber: 2.0 Consensus size: 63
58026 CTTCTAAGTC
* * *
58036 CACAACTCCGTGGC-ACCTTCTTTCCAAAGCCCACACAAGTCGGTGGCAACTCTTCCTAAAGCCC
1 CACAACTCCGTGGCAACC-ACTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTT-CT-AAGCCC
58100 A
63 A
* * *
58101 CACAAGTCGGTGGCAACCACTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
1 CACAACTCCGTGGCAACCACTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
58164 ATATAGCTGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
63 7 0.12
64 2 0.04
65 44 0.79
66 3 0.05
ACGTcount: A:0.27, C:0.38, G:0.17, T:0.18
Consensus pattern (63 bp):
CACAACTCCGTGGCAACCACTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
Found at i:58135 original size:157 final size:151
Alignment explanation
Indices: 57671--58135 Score: 348
Period size: 157 Copynumber: 2.9 Consensus size: 151
57661 CACTATTTTT
* * *
57671 CCTTTTAAGCCCACGACTCCGTGGCAC-CTTTTTCTTTTCTAAGTCCACAACTCCGTGGCACTCT
1 CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTC-CTTCTAAGTCCACAACTCCGTGGCAC-C-
* * * * * * * * * *
57735 TTTTCCTTTTAAGCCCATAACTCCGTGGCACCTTTTTCTTTTCTAAGTCCACGACTCCGTGGCAC
63 CTTT-C---AAAGCCCACAAGTCCATGGCA-CTCTTTC-CTT-AAAGCCCACGACTCGGTGGCAC
* * * * *
57800 CTTTTTCTTTTCTAAGTCCATAACTCCGTGGCAC
121 C---TACTTCTCTAAGCCCACAACTCCGTGCCAC
* * *
57834 CCTTTTAAGCCCACAACTTCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCTT
1 CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTT
* * * * *
57899 TTAAAGCCCACAATTCCATGGCACTCTTTTTCCTTTTAAGCCCACGACTCTGTGGCACCTTTTTC
66 TCAAAGCCCACAAGTCCATGGCACTC--TTTCC-TTAAAGCCCACGACTCGGTGGCACC---TAC
* *
57964 TTTTCTAAGTCCACAACTCCGTGCCAC
125 TTCTCTAAGCCCACAACTCCGTGCCAC
57991 CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTC
1 CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACC--C
**
58056 TTTCCAAAGCCCACACAAGTCGGTGGCAACTC-TTCC-TAAAGCCCAC-ACAAGTCGGTGGCAAC
64 TTT-CAAAG-CC-CACAAGTCCATGGC-ACTCTTTCCTTAAAGCCCACGAC---TCGGTGGC-AC
58118 C-AC-TCTCTAAAGCCCACA
121 CTACTTCTCT-AAGCCCACA
58136 CAAGTCGGTG
Statistics
Matches: 259, Mismatches: 28, Indels: 36
0.80 0.09 0.11
Matches are distributed among these distances:
156 6 0.02
157 139 0.54
158 15 0.06
159 4 0.02
160 15 0.06
161 8 0.03
162 12 0.05
163 53 0.20
164 7 0.03
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.31
Consensus pattern (151 bp):
CCTTTTAAGCCCACAACTCCGTGCCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTT
TCAAAGCCCACAAGTCCATGGCACTCTTTCCTTAAAGCCCACGACTCGGTGGCACCTACTTCTCT
AAGCCCACAACTCCGTGCCAC
Found at i:58149 original size:33 final size:31
Alignment explanation
Indices: 58061--58163 Score: 163
Period size: 33 Copynumber: 3.3 Consensus size: 31
58051 CCTTCTTTCC
*
58061 AAAGCCCACACAAGTCGGTGGCAACTCTTCCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTT-CT
58093 AAAGCCCACACAAGTCGGTGGCAACCACTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACC-CT-TCT
58126 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
58157 -AAGCCCA
1 AAAGCCCA
58164 ATATAGCTGG
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
30 7 0.10
31 3 0.04
32 27 0.40
33 30 0.44
34 1 0.01
ACGTcount: A:0.30, C:0.36, G:0.18, T:0.16
Consensus pattern (31 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCT
Found at i:58214 original size:49 final size:49
Alignment explanation
Indices: 58156--58671 Score: 646
Period size: 49 Copynumber: 10.7 Consensus size: 49
58146 GCAACCCTTC
* * * * *
58156 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATGTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
58205 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
58253 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C--CA---T
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
58296 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
58345 TAAGTCCAATGTAGTTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
58394 TAAGTCCAATATAGCTGGCCTTGAATCATCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
58443 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTAATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
58492 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
58540 TAAGTCCAAATGTAGCTGGCCTTGAATCAACACATTGGCA----C--CTT
1 TAAGTCC-AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
58584 TAAGTCCAATATAGTTGGCCTTGAATTAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
58636 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
58672 ACATCTTTTT
Statistics
Matches: 406, Mismatches: 45, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
43 64 0.16
44 11 0.03
46 4 0.01
47 1 0.00
48 56 0.14
49 235 0.58
50 1 0.00
52 34 0.08
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:58491 original size:147 final size:142
Alignment explanation
Indices: 58156--58671 Score: 743
Period size: 147 Copynumber: 3.6 Consensus size: 142
58146 GCAACCCTTC
* * *
58156 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATGTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * *
58221 GGCCTTGACTCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACA
66 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACA
58286 TTGGCACCA--T
131 TTGGCACCACTT
* *
58296 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * * * *
58361 GGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCATCAT
66 GGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACAC
58426 ATTGGCACCTTTATCTT
130 ATTGGCACC---A-CTT
* * * *
58443 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTAATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
58508 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAAATGTAGCTGGCCTTGAATCAACAC
66 GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCC-AATGTAGCTGGCCTTGAATCAACAC
58573 ATTGGCA-C-CTT
130 ATTGGCACCACTT
* * *
58584 TAAGTCCAATATAGTTGGCCTTGAATTAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTA
58649 GCTGGCCTTGAATCAGCACATTG
63 GCTGGCCTTGAATCAGCACATTG
58672 ACATCTTTTT
Statistics
Matches: 338, Mismatches: 27, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
140 85 0.25
141 82 0.24
143 2 0.01
144 41 0.12
146 14 0.04
147 114 0.34
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (142 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACA
TTGGCACCACTT
Found at i:58716 original size:55 final size:54
Alignment explanation
Indices: 58581--58734 Score: 186
Period size: 55 Copynumber: 2.9 Consensus size: 54
58571 ACATTGGCAC
* *
58581 CTTTAAGTCCAATATAGTTGGCCTTGAATTAGCATATTGGCA-C-CTTTTCCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCATCTTTTTTCCAT
* * * * *
58633 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTTCTCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCATCTTTTTTC-CAT
* * * *
58688 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCATCTTT
58735 ATCACTTTTC
Statistics
Matches: 83, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
52 36 0.43
53 1 0.01
54 5 0.06
55 41 0.49
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCATCTTTTTTCCAT
Found at i:58792 original size:67 final size:68
Alignment explanation
Indices: 58684--58810 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
58674 ATCTTTTTTC
* * *
58684 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
58748 TCT
66 TCT
* * * * *
58751 TCATCTTTAAGTCTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
58811 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:70862 original size:33 final size:32
Alignment explanation
Indices: 70825--70888 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
70815 CACTCCTAGA
*
70825 TGTATCGATACATATTGCTTAGTATTGATACAT
1 TGTATCGATACATATT-CTTAGTATCGATACAT
* *
70858 TGTATCGATACATGTTCTTTGTATCGATACA
1 TGTATCGATACATATTCTTAGTATCGATACA
70889 CCATAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTCTTAGTATCGATACAT
Found at i:71552 original size:33 final size:32
Alignment explanation
Indices: 71467--71592 Score: 130
Period size: 33 Copynumber: 3.8 Consensus size: 32
71457 TGATTGAGAG
*
71467 GTTCTATCTTAGCCTTTAAAAAAGATAGGGAGAAA
1 GTTCTATCTTAG-CTTT-GAAAAGATAGGGA-AAA
* *
71502 GGTTTTATCTTAACTTGTGAAAAGATAGGGAAAA
1 -GTTCTATCTTAGCTT-TGAAAAGATAGGGAAAA
*
71536 GTTCTATCTTAGCTTGTGAAAAGATAGGG--AG
1 GTTCTATCTTAGCTT-TGAAAAGATAGGGAAAA
* *
71567 GTTCTATCTTTGCTTTCAAAAGATAG
1 GTTCTATCTTAGCTTTGAAAAGATAG
71593 TAGTTGTAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
30 10 0.12
31 15 0.19
33 27 0.33
34 3 0.04
35 15 0.19
36 11 0.14
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.33
Consensus pattern (32 bp):
GTTCTATCTTAGCTTTGAAAAGATAGGGAAAA
Found at i:74356 original size:23 final size:26
Alignment explanation
Indices: 74310--74373 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 26
74300 TATAACAAAA
74310 AGGAGGAGAAGAGTCTATAAATAAATTT
1 AGGAGGAGAAGAGTC-AT-AATAAATTT
*
74338 -GGAGGAGAAGAGTC-T-ATAAGTTT
1 AGGAGGAGAAGAGTCATAATAAATTT
*
74361 AGG-GAAGAAGAGT
1 AGGAGGAGAAGAGT
74374 TAGTCTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 16 0.48
24 2 0.06
25 1 0.03
27 14 0.42
ACGTcount: A:0.42, C:0.03, G:0.33, T:0.22
Consensus pattern (26 bp):
AGGAGGAGAAGAGTCATAATAAATTT
Found at i:75268 original size:20 final size:20
Alignment explanation
Indices: 75243--75280 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75233 CAACGGCTAT
* *
75243 AATTGTATTGATATATTATG
1 AATTGTATCGATACATTATG
75263 AATTGTATCGATACATTA
1 AATTGTATCGATACATTA
75281 AGCCCAACGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (20 bp):
AATTGTATCGATACATTATG
Found at i:75830 original size:31 final size:31
Alignment explanation
Indices: 75720--75879 Score: 117
Period size: 31 Copynumber: 5.0 Consensus size: 31
75710 AAATGATTAA
* *
75720 GAGGTTTTATCTTAGCCTTTGAAAAAGATAAGAAG
1 GAGGTTCTATCTTAGCCTGTG-AAAAGAT-AG--G
* *
75755 AAAGGTTCTATTTTAGCCTGTGAAAA-ATAGG
1 -GAGGTTCTATCTTAGCCTGTGAAAAGATAGG
* *
75786 GAAGCAGTTCTATCTTAGTCTATGAAAAGATAGG
1 G-AG--GTTCTATCTTAGCCTGTGAAAAGATAGG
* * * *
75820 GAGGTTCTATCTAAGCTTGTGAAAATATAAG
1 GAGGTTCTATCTTAGCCTGTGAAAAGATAGG
* * *
75851 GAAGTTTTATCTTAGCCT-TCAAAAGATAG
1 GAGGTTCTATCTTAGCCTGTGAAAAGATAG
75880 TGTTGTAAGG
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
30 8 0.08
31 39 0.39
33 23 0.23
34 8 0.08
35 4 0.04
36 17 0.17
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.32
Consensus pattern (31 bp):
GAGGTTCTATCTTAGCCTGTGAAAAGATAGG
Found at i:77747 original size:76 final size:78
Alignment explanation
Indices: 77582--77754 Score: 214
Period size: 76 Copynumber: 2.3 Consensus size: 78
77572 TTTGGAGATA
*
77582 AAAAT-GGGGTTAGAGTATCTCCTCGAAAATACAAGGTTGGAGTATCCCTGATTATGAAAAATCG
1 AAAATCGGGGTTGGAGTATCTCCTCGAAAATACAAGGTTGGAGTATCCCTGATTATGAAAAATCG
* *
77646 GTGTTCTGGAAAT
66 ATGTTCTAGAAAT
** * *
77659 AAAA-CAAAGGTTGGAGTATCTCCTC-AGAAATA-GA-GTTGGAGTATCTCC-GATTGTGAAAAA
1 AAAATC-GGGGTTGGAGTATCTCCTCGA-AAATACAAGGTTGGAGTATC-CCTGATTATGAAAAA
77719 TCGATGTTCTAGAAAT
63 TCGATGTTCTAGAAAT
77735 AAAATCGGGGTTGGAGTATC
1 AAAATCGGGGTTGGAGTATC
77755 CCCGATGGTG
Statistics
Matches: 82, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
76 52 0.63
77 9 0.11
78 21 0.26
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.28
Consensus pattern (78 bp):
AAAATCGGGGTTGGAGTATCTCCTCGAAAATACAAGGTTGGAGTATCCCTGATTATGAAAAATCG
ATGTTCTAGAAAT
Found at i:77785 original size:51 final size:51
Alignment explanation
Indices: 77690--77807 Score: 137
Period size: 51 Copynumber: 2.3 Consensus size: 51
77680 CCTCAGAAAT
* * *
77690 AGAGTTGGAGTATCTCCGATTGTGAAAAATCGATGTTCTAGAAATAAAATC
1 AGAGTTGGAGTATCCCCGATGGTGAAAAATCGATGTTCTAGAAATAAAACC
* * * * * * *
77741 GGGGTTGGAGTATCCCCGATGGTGAAAATTTGGTGTTTTGGAAATAAAACC
1 AGAGTTGGAGTATCCCCGATGGTGAAAAATCGATGTTCTAGAAATAAAACC
*
77792 AGATTTGGAGTATCCC
1 AGAGTTGGAGTATCCC
77808 TTTGGACATA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
AGAGTTGGAGTATCCCCGATGGTGAAAAATCGATGTTCTAGAAATAAAACC
Found at i:77899 original size:51 final size:51
Alignment explanation
Indices: 77822--77937 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
77812 GACATAACGG
* * *
77822 GGTTGGAGTATTCCCGATTGCAAAAAACCAGTGTTCTGAAAATAAAACCGA
1 GGTTGGAGTATCCCCGATGGCAAAAAACCAATGTTCTGAAAATAAAACCGA
** * * * * *
77873 GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATGGCAAAAAACCAATGTTCTGAAAATAAAACCGA
*
77924 GGTTGGACTATCCC
1 GGTTGGAGTATCCC
77938 TCAAAAATAA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATGGCAAAAAACCAATGTTCTGAAAATAAAACCGA
Found at i:77977 original size:130 final size:127
Alignment explanation
Indices: 77615--77977 Score: 383
Period size: 130 Copynumber: 2.8 Consensus size: 127
77605 CGAAAATACA
* ** * *
77615 AGGTTGGAGTATCCCTGATTATGAAAAATCGGTGTTCTGGAAATAAAACAAAGGTTGGAGTATCT
1 AGGTTGGAGTATCCCCGATGGTGAAAAATCGGTGTTTTGGAAATAAAAC-AGGGTTGGAGTATC-
* * * * *
77680 CCTCAGAAAT-A-GAGTTGGAGTATCTCCGATTGTGAAAAATCGATGTTCTAGAAATAAAATCG
64 CCTCAGAAATAAGGGGTTGGAGTATCCCCGATTGTGAAAAAACCATGTTCTAGAAATAAAACCG
* * * **
77742 GGGTTGGAGTATCCCCGATGGTGAAAATTTGGTGTTTTGGAAATAAAACCAGATTTGGAGTATCC
1 AGGTTGGAGTATCCCCGATGGTGAAAAATCGGTGTTTTGGAAATAAAA-CAGGGTTGGAGTATCC
** * * *
77807 CTTTGGACATAACGGGGTTGGAGTATTCCCGATTG-CAAAAAACCAGTGTTCT-GAAAATAAAAC
65 C-TCAGAAATAA-GGGGTTGGAGTATCCCCGATTGTGAAAAAACCA-TGTTCTAG-AAATAAAAC
77870 CG
126 CG
** * *
77872 AGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACTATCC
1 AGGTTGGAGTATCCCCGATGGTGAAAAATCGGTGTTTTGGAAATAAAA-CAGGGTTGGAGTATCC
* *
77937 CTCAAAAATAATGGGGTCGGAGTATCCCCGATTGTGAAAAA
65 CTCAGAAATAA-GGGGTTGGAGTATCCCCGATTGTGAAAAA
77978 TTGATGGTTT
Statistics
Matches: 190, Mismatches: 38, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
126 2 0.01
127 57 0.30
128 2 0.01
129 34 0.18
130 95 0.50
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (127 bp):
AGGTTGGAGTATCCCCGATGGTGAAAAATCGGTGTTTTGGAAATAAAACAGGGTTGGAGTATCCC
TCAGAAATAAGGGGTTGGAGTATCCCCGATTGTGAAAAAACCATGTTCTAGAAATAAAACCG
Found at i:78010 original size:208 final size:208
Alignment explanation
Indices: 77741--78173 Score: 593
Period size: 208 Copynumber: 2.1 Consensus size: 208
77731 AAATAAAATC
* * * *
77741 GGGGTTGGAGTATCCCCGATGGTGAAAATTTGGTGTTTTGGAAATAAAACCAGATTTGGAGTA-T
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATTGATGGTTTGGAAATAAAACCAGAGTTGGAGTATT
** * * *
77805 CCCTTTGGACATAACGGGGTTGGAGTATTCCC-GATTGCAAAAAACCAGTGTTCTGAAAATAAAA
66 CCC-TCAGAAATAACGGGGTTAGAGTA-TCCCTGATTGCAAAAAACCAGTGTTATGAAAATAAAA
*
77869 CCGAGGTTGGAGTATCCCCGATGGT-GAAAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACT
129 CCGAGGTTAGAGTATCCCCGATGGTAG-AAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACT
77933 ATCCCTCAAAAATAAT
193 ATCCCTCAAAAATAAT
* * * *
77949 GGGGTCGGAGTATCCCCGATTGTGAAAAATTGATGGTTTGGAAATAAAATCAGGGTTGGAGTATT
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATTGATGGTTTGGAAATAAAACCAGAGTTGGAGTATT
*** * *
78014 CCCTCAGAAATAACGGGGTTAGAGTATCCCTGATTGTGGAAAATCAGTGTTATGGAAATAAAACC
66 CCCTCAGAAATAACGGGGTTAGAGTATCCCTGATTGCAAAAAACCAGTGTTATGAAAATAAAACC
* ** *
78079 GAGGTTAGAGTATCCTCGATGGTAGAAAATTGATGTTTTGGAAATAAAATCGGGGTTGGAGTATC
131 GAGGTTAGAGTATCCCCGATGGTAGAAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACTATC
78144 CCTCAAAAATAAT
196 CCTCAAAAATAAT
* *
78157 AGGGTTGGAGAATCCCC
1 GGGGTTGGAGTATCCCC
78174 TCGGAAATAA
Statistics
Matches: 196, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
207 4 0.02
208 187 0.95
209 5 0.03
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (208 bp):
GGGGTTGGAGTATCCCCGATGGTGAAAAATTGATGGTTTGGAAATAAAACCAGAGTTGGAGTATT
CCCTCAGAAATAACGGGGTTAGAGTATCCCTGATTGCAAAAAACCAGTGTTATGAAAATAAAACC
GAGGTTAGAGTATCCCCGATGGTAGAAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACTATC
CCTCAAAAATAAT
Found at i:78049 original size:79 final size:78
Alignment explanation
Indices: 77873--78076 Score: 266
Period size: 78 Copynumber: 2.6 Consensus size: 78
77863 ATAAAACCGA
* * *
77873 GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACTATCCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAATGGTTTGGAAATAAAATCAGGGTTGGACTATCCC
*
77938 TCAAAAATAATGG
66 TCAAAAATAACGG
* ** *
77951 GGTCGGAGTATCCCCGATTGTGAAAAATTGATGGTTTGGAAATAAAATCAGGGTTGGAGTATTCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAATGGTTTGGAAATAAAATCAGGGTTGGACTA-TCC
*
78016 CTCAGAAATAACGG
65 CTCAAAAATAACGG
* * * *
78030 GGTTAGAGTATCCCTGATTGTGGAAAATCAGT-GTTATGGAAATAAAA
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAATGGTT-TGGAAATAAAA
78077 CCGAGGTTAG
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
78 57 0.53
79 51 0.47
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.27
Consensus pattern (78 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATCAATGGTTTGGAAATAAAATCAGGGTTGGACTATCCC
TCAAAAATAACGG
Found at i:78090 original size:79 final size:78
Alignment explanation
Indices: 77873--78091 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 78
77863 ATAAAACCGA
* * * *
77873 GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAATCGGGGTTGGACTA-TCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAGTG-TTTGGAAATAAAATCGAGGTTGGAGTATTCC
*
77937 CTCAAAAATAATGG
65 CTCAAAAATAACGG
* *
77951 GGTCGGAGTATCCCCGATTGTGAAAAAT-TGATGGTTTGGAAATAAAATC-AGGGTTGGAGTATT
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAG-T-GTTTGGAAATAAAATCGA-GGTTGGAGTATT
*
78014 CCCTCAGAAATAACGG
63 CCCTCAAAAATAACGG
* * * * *
78030 GGTTAGAGTATCCCTGATTGTGGAAAATCAGTGTTATGGAAATAAAACCGAGGTTAGAGTAT
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTT-TGGAAATAAAATCGAGGTTGGAGTAT
78092 CCTCGATGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 54 0.45
79 63 0.53
80 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (78 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTTTGGAAATAAAATCGAGGTTGGAGTATTCCC
TCAAAAATAACGG
Found at i:78093 original size:51 final size:52
Alignment explanation
Indices: 78030--78147 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 52
78020 GAAATAACGG
* *
78030 GGTTAGAGTATCCCT-GATTGTGGAAAATCAG-TGTTATGGAAATAAAACCGA
1 GGTTAGAGTATCCCTCGATGGTAGAAAAT-AGATGTTATGGAAATAAAACCGA
* * * *
78081 GGTTAGAGTAT-CCTCGATGGTAGAAAATTGATGTTTTGGAAATAAAATCGG
1 GGTTAGAGTATCCCTCGATGGTAGAAAATAGATGTTATGGAAATAAAACCGA
*
78132 GGTTGGAGTATCCCTC
1 GGTTAGAGTATCCCTC
78148 AAAAATAATA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
50 4 0.07
51 49 0.86
52 4 0.07
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (52 bp):
GGTTAGAGTATCCCTCGATGGTAGAAAATAGATGTTATGGAAATAAAACCGA
Found at i:78183 original size:28 final size:28
Alignment explanation
Indices: 78131--78201 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
78121 AATAAAATCG
*
78131 GGGTTGGAGTAT-CCCTCAAAAATAATA
1 GGGTTGGAGTATCCCCTCAAAAATAACA
* **
78158 GGGTTGGAGAATCCCCTCGGAAATAACA
1 GGGTTGGAGTATCCCCTCAAAAATAACA
*
78186 GGGTTGAAGTATCCCC
1 GGGTTGGAGTATCCCC
78202 GATGGTGGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 11 0.30
28 26 0.70
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCTCAAAAATAACA
Found at i:78213 original size:106 final size:107
Alignment explanation
Indices: 78087--78280 Score: 266
Period size: 106 Copynumber: 1.8 Consensus size: 107
78077 CCGAGGTTAG
* * * * * *
78087 AGTATCCTCGATGGTAGAAAATTGATGTTTTGGAAATAAAATCGGGGTTGGAGTAT-CCCTCAAA
1 AGTATCCCCGATGGTAGAAAATCGATGCTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAAA
78151 AATAATAG-GGTTGGAGAATCCCCTCGGAAATAACAGGGTTGA
66 AATAA-AGAGGTTGGAGAATCCCCTCGGAAATAACAGGGTTGA
* * *
78193 AGTATCCCCGATGGTGGAAAATCGATGCTTTAGAAATAAAATTAGGGTTAGAGTATCCCCTCGAA
1 AGTATCCCCGATGGTAGAAAATCGATGCTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAAA
* *
78258 AATAACGAGGTTGGAGTATCCCC
66 AATAAAGAGGTTGGAGAATCCCC
78281 GATTATGGAA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
106 49 0.65
107 26 0.35
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (107 bp):
AGTATCCCCGATGGTAGAAAATCGATGCTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAAA
AATAAAGAGGTTGGAGAATCCCCTCGGAAATAACAGGGTTGA
Found at i:78308 original size:79 final size:79
Alignment explanation
Indices: 78156--78329 Score: 212
Period size: 79 Copynumber: 2.2 Consensus size: 79
78146 TCAAAAATAA
* * *
78156 TAGGGTTGGAGAATCCCCTCGGAAATAACAGGGTTGAAGTATCCCCGATGGTGGAAAATCGATGC
1 TAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGAAGTATCCCCGATGATGGAAAATCGATGC
*
78221 TTTAGAAATAAAAT
66 TTTAGAAATAAAAC
* * *
78235 TAGGGTTAGAGTATCCCCTCGAAAATAAC-GAGGTTGGAGTATCCCCGATTATGGAAAATC-AGT
1 TAGGGTTGGAGTATCCCCTCGAAAATAACAG-GGTTGAAGTATCCCCGATGATGGAAAATCGA-T
*
78298 G-TTCTTGAAATAAAAC
64 GCTT-TAGAAATAAAAC
78314 T-GAGGTTGGAGTATCC
1 TAG-GGTTGGAGTATCC
78330 GCGATAGTGG
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 5 0.06
79 77 0.94
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (79 bp):
TAGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGAAGTATCCCCGATGATGGAAAATCGATGC
TTTAGAAATAAAAC
Found at i:78351 original size:51 final size:51
Alignment explanation
Indices: 78264--78363 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
78254 CGAAAATAAC
78264 GAGGTTGGAGTATCCCCGATTATGGAAAATCAGTGTTCTT-GAAATAAAACT
1 GAGGTTGGAGTATCCCCGATTATGGAAAATCAGTGTT-TTAGAAATAAAACT
* * **
78315 GAGGTTGGAGTATCCGCGA-TAGTGGAAATTTTGTGTTTTAGAAATAAAA
1 GAGGTTGGAGTATCCCCGATTA-TGGAAAATCAGTGTTTTAGAAATAAAA
78364 ACATGAATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 4 0.09
51 39 0.91
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (51 bp):
GAGGTTGGAGTATCCCCGATTATGGAAAATCAGTGTTTTAGAAATAAAACT
Found at i:81056 original size:50 final size:51
Alignment explanation
Indices: 81003--81186 Score: 205
Period size: 50 Copynumber: 3.7 Consensus size: 51
80993 AAAATGCTTG
* * * **
81003 AATGTATTGATACATTGAGA-AATGTATCGATACATCTAAGTAAAACCCGG
1 AATGTATCGATACAATGAGAGAATGTATCGATACATCTAGGTAAAACCCAA
* * *
81053 AATGTATCGATACCATGA-AAAATGTATTGATACATCTAGGTAAAACCCAA
1 AATGTATCGATACAATGAGAGAATGTATCGATACATCTAGGTAAAACCCAA
* * * * *
81103 AATGTATCGATACAATG-GATAATGTATTGATACTTCTTGGTAAAACCTAA
1 AATGTATCGATACAATGAGAGAATGTATCGATACATCTAGGTAAAACCCAA
* *
81153 AATGTATTGATACAATGA-AGAATGTATCAATACA
1 AATGTATCGATACAATGAGAGAATGTATCGATACA
81187 AATTGTGGAA
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 113 0.99
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (51 bp):
AATGTATCGATACAATGAGAGAATGTATCGATACATCTAGGTAAAACCCAA
Found at i:81186 original size:100 final size:100
Alignment explanation
Indices: 81003--81186 Score: 226
Period size: 100 Copynumber: 1.8 Consensus size: 100
80993 AAAATGCTTG
* * ** *
81003 AATGTATTGATACATTGAGAAATGTATCGATACATCTAAGTAAAACCCGGAATGTATCGATACCA
1 AATGTATCGATACAATGAGAAATGTATCGATACATCTAAGTAAAACCCAAAATGTATCGATACAA
**
81068 TGAAAAATGTATTGATACATCTAGGTAAAACCCAA
66 TGAAAAATGTATCAATACATCTAGGTAAAACCCAA
* * ** * *
81103 AATGTATCGATACAATG-GATAATGTATTGATACTTCTTGGTAAAACCTAAAATGTATTGATACA
1 AATGTATCGATACAATGAGA-AATGTATCGATACATCTAAGTAAAACCCAAAATGTATCGATACA
*
81167 ATGAAGAATGTATCAATACA
65 ATGAAAAATGTATCAATACA
81187 AATTGTGGAA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
99 2 0.03
100 67 0.97
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (100 bp):
AATGTATCGATACAATGAGAAATGTATCGATACATCTAAGTAAAACCCAAAATGTATCGATACAA
TGAAAAATGTATCAATACATCTAGGTAAAACCCAA
Found at i:82495 original size:13 final size:13
Alignment explanation
Indices: 82476--82514 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
82466 ACTATTTATG
82476 ATGTATCGATACA
1 ATGTATCGATACA
*
82489 CTGTATCGATACA
1 ATGTATCGATACA
82502 ATGTATCGATACA
1 ATGTATCGATACA
82515 TGAATAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:82568 original size:10 final size:10
Alignment explanation
Indices: 82549--82579 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
82539 GTATCGATAC
82549 ATGAACAGTG
1 ATGAACAGTG
*
82559 ATGAATAGTG
1 ATGAACAGTG
82569 ATGAACAGTG
1 ATGAACAGTG
82579 A
1 A
82580 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:82722 original size:21 final size:20
Alignment explanation
Indices: 82674--82728 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
82664 TACATATTTG
**
82674 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATAAAA
* *
82694 TCTGTATCGATACATTTAAAA
1 TGTGTATCGATAC-TATAAAA
82715 TGTGTATCGATACT
1 TGTGTATCGATACT
82729 TTTCAGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTGTATCGATACTATAAAA
Found at i:84466 original size:13 final size:13
Alignment explanation
Indices: 84448--84472 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84438 ACTGAAGTAA
84448 TGTATCGATACAT
1 TGTATCGATACAT
84461 TGTATCGATACA
1 TGTATCGATACA
84473 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:85086 original size:23 final size:24
Alignment explanation
Indices: 85041--85087 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
85031 CAATGGATTG
*
85041 AACACAAATTCAATTAAGCATAAA
1 AACACAAATTCAATTAAGAATAAA
85065 AACACAAATT-AATTGAA-AATAAA
1 AACACAAATTCAATT-AAGAATAAA
85088 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.62, C:0.13, G:0.04, T:0.21
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAATAAA
Found at i:86557 original size:21 final size:21
Alignment explanation
Indices: 86533--86574 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
86523 ATCCATTTCT
* *
86533 TCATTTTCATCAACCTCTTGA
1 TCATCTTCATCAACATCTTGA
*
86554 TCATCTTCATCATCATCTTGA
1 TCATCTTCATCAACATCTTGA
86575 ACGATTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
TCATCTTCATCAACATCTTGA
Found at i:88272 original size:10 final size:10
Alignment explanation
Indices: 88253--88283 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
88243 GTATCGATAC
88253 ATGAACAGTG
1 ATGAACAGTG
*
88263 ATGAATAGTG
1 ATGAACAGTG
88273 ATGAACAGTG
1 ATGAACAGTG
88283 A
1 A
88284 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:88371 original size:53 final size:53
Alignment explanation
Indices: 88307--88443 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
88297 CTACTACCAA
*
88307 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAGTGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
88360 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
*
88413 TGTATTGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
88444 TATGCAATCT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 65 0.83
54 13 0.17
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:88479 original size:21 final size:20
Alignment explanation
Indices: 88431--88485 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
88421 TACATATTTG
**
88431 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATAAAA
* *
88451 TCTGTATCGATACATTTAAAA
1 TGTGTATCGATAC-TATAAAA
88472 TGTGTATCGATACT
1 TGTGTATCGATACT
88486 TTTCAGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTGTATCGATACTATAAAA
Found at i:88546 original size:21 final size:21
Alignment explanation
Indices: 88522--88564 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
88512 AAGTCAACCT
88522 TATGTATTAATACGAATA-GTA
1 TATGTATTAATAC-AATACGTA
*
88543 TATGTATTGATACAATACGTA
1 TATGTATTAATACAATACGTA
88564 T
1 T
88565 TTTTACTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (21 bp):
TATGTATTAATACAATACGTA
Found at i:95647 original size:12 final size:11
Alignment explanation
Indices: 95630--95683 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 11
95620 CGTCCTTCGT
*
95630 ATAAAAAGAACA
1 ATAAAAA-AATA
95642 ATAAAAAAATA
1 ATAAAAAAATA
95653 ATAATAAAAATA
1 ATAA-AAAAATA
* *
95665 ATAAAACAACA
1 ATAAAAAAATA
95676 A-AAAAAAA
1 ATAAAAAAA
95684 AAAAACAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 6 0.16
11 13 0.35
12 18 0.49
ACGTcount: A:0.80, C:0.06, G:0.02, T:0.13
Consensus pattern (11 bp):
ATAAAAAAATA
Found at i:95664 original size:20 final size:19
Alignment explanation
Indices: 95641--95697 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 19
95631 TAAAAAGAAC
* *
95641 AATAAAAAAATAATAATAAA
1 AATAAAAAAACAACAA-AAA
*
95661 AATAATAAAACAACAAAAA
1 AATAAAAAAACAACAAAAA
95680 AA-AAAAAAACAA-AAAAA
1 AATAAAAAAACAACAAAAA
95697 A
1 A
95698 GGTCTAAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
17 6 0.18
18 9 0.27
19 5 0.15
20 13 0.39
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.11
Consensus pattern (19 bp):
AATAAAAAAACAACAAAAA
Found at i:95693 original size:14 final size:15
Alignment explanation
Indices: 95632--95697 Score: 60
Period size: 17 Copynumber: 4.1 Consensus size: 15
95622 TCCTTCGTAT
*
95632 AAAAAGAACAATAAAA
1 AAAAACAACAA-AAAA
* *
95648 AAATAATAATAAAAATA
1 AAA-AACAACAAAAA-A
95665 ATAAAACAACAAAAAA
1 A-AAAACAACAAAAAA
*
95681 AAAAAAAACAAAAAA
1 AAAAACAACAAAAAA
95696 AA
1 AA
95698 GGTCTAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
15 15 0.36
16 8 0.19
17 17 0.40
18 2 0.05
ACGTcount: A:0.83, C:0.06, G:0.02, T:0.09
Consensus pattern (15 bp):
AAAAACAACAAAAAA
Found at i:97430 original size:97 final size:97
Alignment explanation
Indices: 97259--97502 Score: 461
Period size: 97 Copynumber: 2.5 Consensus size: 97
97249 TTTTTTATTG
* *
97259 AAAAACGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTA
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTGGAGTGTCCCCAATGATGACAATTTA
97324 AGTGAGAATAAAATTTAAACTTTGATGCGTTT
66 AGTGAGAATAAAATTTAAACTTTGATGCGTTT
97356 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTGGAGTGTCCCCAATGATGACAATTTA
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTGGAGTGTCCCCAATGATGACAATTTA
97421 AGTGAGAATAAAATTTAAACTTTGATGCGTTT
66 AGTGAGAATAAAATTTAAACTTTGATGCGTTT
*
97453 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTGAAGTGTCCCC
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTGGAGTGTCCCC
97503 GATAAATAAA
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 144 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (97 bp):
AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTGGAGTGTCCCCAATGATGACAATTTA
AGTGAGAATAAAATTTAAACTTTGATGCGTTT
Found at i:99575 original size:20 final size:20
Alignment explanation
Indices: 99550--99674 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
99540 TTTTAACTAG
99550 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
99570 ATGTATCGATACATCCGAGTAAA
1 ATGTATCGATACAT-TGA--AAA
*
99593 ATGACAGAATAGATCGATACATTGAAGA
1 AT----G--T--ATCGATACATTGAAAA
* * * *
99621 ATGTATCAATACATTCATAC
1 ATGTATCGATACATTGAAAA
*
99641 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
99661 ATGTATCGATACAT
1 ATGTATCGATACAT
99675 CTGGGTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
20 54 0.67
21 2 0.02
22 1 0.01
23 5 0.06
24 1 0.01
27 1 0.01
28 4 0.05
29 1 0.01
30 2 0.02
31 10 0.12
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:99627 original size:51 final size:49
Alignment explanation
Indices: 99554--99726 Score: 175
Period size: 51 Copynumber: 3.6 Consensus size: 49
99544 AACTAGATGT
*
99554 ATCGATACATTGAAAAATGTATCGATACATCCGAGTAAAATGACAGAATAG
1 ATCGATACATTGAAGAATGTATCGATACATCCGAGTAAAATGA-AGAAT-G
* * *
99605 ATCGATACATTGAAGAATGTATCAATACATTC-A-T-ACAT---G--T-
1 ATCGATACATTGAAGAATGTATCGATACATCCGAGTAAAATGAAGAATG
* * *
99645 ATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGAATG
1 ATCGATACATTGAAGAATGTATCGATACATCCGAGTAAAATGA-AGAATG
*
99695 TATCGATACATTGAAGAATGTATTGATACATC
1 -ATCGATACATTGAAGAATGTATCGATACATC
99727 TAGGTACTTT
Statistics
Matches: 100, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
40 29 0.29
42 2 0.02
43 2 0.02
44 1 0.01
47 1 0.01
48 3 0.03
49 2 0.02
50 1 0.01
51 59 0.59
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (49 bp):
ATCGATACATTGAAGAATGTATCGATACATCCGAGTAAAATGAAGAATG
Found at i:99725 original size:91 final size:91
Alignment explanation
Indices: 99550--99717 Score: 275
Period size: 91 Copynumber: 1.8 Consensus size: 91
99540 TTTTAACTAG
*
99550 ATGTATCGATACATTGAAAAATGTATCGATACATCCGAGTAAAATGACAGAATAGATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCCGAGTAAAAGGACAGAATAGATCGATACAT
99615 TGAAGAATGTATCAATACATTCATAC
66 TGAAGAATGTATCAATACATTCATAC
* * * *
99641 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGAAT-GTATCGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCCGAGTAAAAGGACAGAATAG-ATCGATACA
99705 TTGAAGAATGTAT
65 TTGAAGAATGTAT
99718 TGATACATCT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
90 1 0.01
91 70 0.99
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCCGAGTAAAAGGACAGAATAGATCGATACAT
TGAAGAATGTATCAATACATTCATAC
Found at i:100667 original size:32 final size:30
Alignment explanation
Indices: 100631--100790 Score: 215
Period size: 28 Copynumber: 5.4 Consensus size: 30
100621 CACTAACTTG
*
100631 TGTGGGCTTTGAAAAGAGTTGCCACCGACT
1 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
*
100661 CATGTGGGCTTTGAAAAGAGTTACCACT-AGCT
1 --TGTGGGCTTTGAAAAGAGTTGCCACTGA-CT
100693 TGTGGGCTTTGAAAAGAG-TGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
*
100722 TGTGGGCTTTG-AAAG-GGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
*
100750 TGTGGGCTTTG-AAAG-GATGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
100778 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
100791 GAGATGAACG
Statistics
Matches: 120, Mismatches: 4, Indels: 11
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.01
28 53 0.44
29 20 0.17
30 19 0.16
31 1 0.01
32 26 0.22
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (30 bp):
TGTGGGCTTTGAAAAGAGTTGCCACTGACT
Found at i:102079 original size:13 final size:13
Alignment explanation
Indices: 102061--102085 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102051 TATTATTTGT
102061 TTTTTGTTTTTCG
1 TTTTTGTTTTTCG
102074 TTTTTGTTTTTC
1 TTTTTGTTTTTC
102086 TTGGGTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.12, T:0.80
Consensus pattern (13 bp):
TTTTTGTTTTTCG
Found at i:113471 original size:97 final size:97
Alignment explanation
Indices: 113363--113596 Score: 387
Period size: 97 Copynumber: 2.4 Consensus size: 97
113353 AAAAACGAGA
* * *
113363 TTGGACTATCCCCACGGAGAAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
1 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
113428 AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
66 AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
* * *
113460 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCTAATGATGACCATTTAAGTGAGAATA
1 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
*
113525 AAATTTAAACTTTGATGCGTTTAAAAGCGGGG
66 AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
* *
113557 TTGGAGTATCCCCTCGGAGGAATGAGGTTGAAGTGTCCCC
1 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCC
113597 GATAAATAAA
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 127 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (97 bp):
TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
Found at i:114965 original size:97 final size:97
Alignment explanation
Indices: 114718--114951 Score: 405
Period size: 97 Copynumber: 2.4 Consensus size: 97
114708 AAAAACGAGA
* * *
114718 TTGGACTATCCCCACGGAGAAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
1 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
114783 AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
66 AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
*
114815 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAGTGAGAATA
1 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
*
114880 AAATTTAAACTTTGATGCGTTTAAAAGCGGGG
66 AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
* *
114912 TTGGAGTATCCCCTCGGAGGAATGAGGTTGAAGTGTCCCC
1 TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCC
114952 GATAAATAAA
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 130 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (97 bp):
TTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAATGAGAATA
AAATTTAAACTTTGATGCGTTTAAAAGCAGGG
Found at i:117136 original size:51 final size:51
Alignment explanation
Indices: 117078--117271 Score: 309
Period size: 51 Copynumber: 3.8 Consensus size: 51
117068 TTTTAACTAG
* * * * *
117078 ATGTATCGATACATTGAAAAATGTATCGATACATCCGGGAAAAAAGACAGA
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGA
*
117129 ATGTATCGATACGTTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGA
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGA
117180 ATGTATCGATACATT-AAGGAATGTATCGATACATCTGGGTAAAAGGATAGA
1 ATGTATCGATACATTGAA-GAATGTATCGATACATCTGGGTAAAAGGATAGA
*
117231 ATGTATCGATACATTGAAGAATGTATCGATACATCTAGGTA
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTA
117272 CTTTTCTGTA
Statistics
Matches: 133, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
50 2 0.02
51 129 0.97
52 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (51 bp):
ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGA
Found at i:121981 original size:28 final size:27
Alignment explanation
Indices: 121949--122017 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
121939 TAATCTTTAA
**
121949 TGGAATCAAGAAAAGTGCCAATCCGTAG
1 TGGAATCAAGAAAAGTG-CAATCCCCAG
* *
121977 TGGAATCAGGACAAATTGCAATCCCCAG
1 TGGAATCAAGA-AAAGTGCAATCCCCAG
*
122005 TAGAATCAAGAAA
1 TGGAATCAAGAAA
122018 CTTGCAATGG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.06
28 27 0.79
29 5 0.15
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (27 bp):
TGGAATCAAGAAAAGTGCAATCCCCAG
Found at i:122666 original size:33 final size:33
Alignment explanation
Indices: 122629--122691 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
122619 TCATCCTTTT
* *
122629 AAGCCCACACAAGTTGGTGGCATCTTTTCTCGA
1 AAGCCCACACAAGTCGGTGGCATCCTTTCTCGA
122662 AAGCCCACACAAGTCGGTGGCATCCTTTCT
1 AAGCCCACACAAGTCGGTGGCATCCTTTCT
122692 TTCAAAGCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (33 bp):
AAGCCCACACAAGTCGGTGGCATCCTTTCTCGA
Found at i:122732 original size:31 final size:31
Alignment explanation
Indices: 122679--122747 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
122669 CACAAGTCGG
* *
122679 TGGCATCCTTTCTTTCAAAGCCCGCAACTCCA
1 TGGCA-CCTTCCTTTCAAAGCCCACAACTCCA
* * *
122711 TGGCACCTTCCTTTTAAAGCCCATAACTCTA
1 TGGCACCTTCCTTTCAAAGCCCACAACTCCA
122742 TGGCAC
1 TGGCAC
122748 TTCATCCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.23, C:0.35, G:0.13, T:0.29
Consensus pattern (31 bp):
TGGCACCTTCCTTTCAAAGCCCACAACTCCA
Found at i:123071 original size:52 final size:52
Alignment explanation
Indices: 123009--123142 Score: 151
Period size: 52 Copynumber: 2.6 Consensus size: 52
122999 TATTATTCCT
* * *
123009 AAGCCCAATGTCGTTGGCCGTGAATCAGCACATTGGCATTATTCTCATCTTC
1 AAGCCTAATGTCGTTGGCCGTGAATCAGCACATTGGCACTATTCGCATCTTC
* * * * * *
123061 AAGTCTAATGTCATTGGTCGTGAATCAACACATTGGCACTCTTCGCATCTTT
1 AAGCCTAATGTCGTTGGCCGTGAATCAGCACATTGGCACTATTCGCATCTTC
* * * *
123113 AAGCCTAATATCGCTGGCCTTAAATCAGCA
1 AAGCCTAATGTCGTTGGCCGTGAATCAGCA
123143 TACTAACACC
Statistics
Matches: 65, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (52 bp):
AAGCCTAATGTCGTTGGCCGTGAATCAGCACATTGGCACTATTCGCATCTTC
Found at i:123164 original size:52 final size:52
Alignment explanation
Indices: 123107--123318 Score: 228
Period size: 52 Copynumber: 3.9 Consensus size: 52
123097 CACTCTTCGC
* *
123107 ATCTTTAAGCCTAATATCGCTGGCCTTAAATCAGCATACTAACACCTTTGTT
1 ATCTTTAAGCCTAATATCGCTGGCCTTAAATCAGCATATTAGCACCTTTGTT
* * **
123159 ATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCATATCGGCACCTTTGTCATT
1 ATCTTTAAGCCTAATATCGCTGGCCTTAAATCAGCATATTAGCACCTTTG---TT
* * * *
123214 CTTCTTTCTTAAGTCC-AATATCACTGGCCTTAAATCAGCATATTAGCGCCTTTGTC
1 -ATC--T-TTAAG-CCTAATATCGCTGGCCTTAAATCAGCATATTAGCACCTTTGTT
* * *
123270 ATCTTTAAGCCCAATATCGCTAGCTTTAAATCAGCATATTAGCACCTTT
1 ATCTTTAAGCCTAATATCGCTGGCCTTAAATCAGCATATTAGCACCTTT
123319 ATCATTCTTC
Statistics
Matches: 132, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
51 2 0.02
52 82 0.62
53 1 0.01
55 4 0.03
56 3 0.02
58 1 0.01
59 37 0.28
60 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (52 bp):
ATCTTTAAGCCTAATATCGCTGGCCTTAAATCAGCATATTAGCACCTTTGTT
Found at i:123247 original size:111 final size:111
Alignment explanation
Indices: 123111--123329 Score: 305
Period size: 111 Copynumber: 2.0 Consensus size: 111
123101 CTTCGCATCT
* * *
123111 TTAAGCCTAATATCGCTGGCCTTAAATCAGCATACTAACACCTTTGTTATCTTTAAGCCTAATAT
1 TTAAGCCTAATATCACTGGCCTTAAATCAGCATACTAACACCTTTGTCATCTTTAAGCCCAATAT
* * * * *
123176 TGCTGGCCTTGAATCAGCATATCGGCACCTTTGTCATTCTTCTTTC
66 CGCTAGCCTTAAATCAGCATATCAGCACCTTTATCATTCTTCTTTC
* * *
123222 TTAAGTCC-AATATCACTGGCCTTAAATCAGCATATTAGCGCCTTTGTCATCTTTAAGCCCAATA
1 TTAAG-CCTAATATCACTGGCCTTAAATCAGCATACTAACACCTTTGTCATCTTTAAGCCCAATA
* *
123286 TCGCTAGCTTTAAATCAGCATATTAGCACCTTTATCATTCTTCT
65 TCGCTAGCCTTAAATCAGCATATCAGCACCTTTATCATTCTTCT
123330 CATTTTCAAG
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
111 92 0.98
112 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (111 bp):
TTAAGCCTAATATCACTGGCCTTAAATCAGCATACTAACACCTTTGTCATCTTTAAGCCCAATAT
CGCTAGCCTTAAATCAGCATATCAGCACCTTTATCATTCTTCTTTC
Found at i:124104 original size:21 final size:20
Alignment explanation
Indices: 124080--124135 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
124070 TTTTACAATT
124080 TGTATCAATACAAAGAGTAAA
1 TGTATCAATACAAA-AGTAAA
* *
124101 TGTATCAATACATAAGTGAA
1 TGTATCAATACAAAAGTAAA
*
124121 TATATCAATACAAAA
1 TGTATCAATACAAAA
124136 TCACCTTCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.27
Consensus pattern (20 bp):
TGTATCAATACAAAAGTAAA
Found at i:124943 original size:13 final size:13
Alignment explanation
Indices: 124925--124950 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
124915 CAATTTTTTG
124925 TGTATCGATACAT
1 TGTATCGATACAT
124938 TGTATCGATACAT
1 TGTATCGATACAT
124951 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:124961 original size:32 final size:33
Alignment explanation
Indices: 124905--124968 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
124895 TACAAGCCAA
*
124905 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATATTTTGTGTATCGATACAT
124938 TGTATCGATAC-ATATTTTGTGTATCGATACA
1 TGTATCGATACAATATTTTGTGTATCGATACA
124969 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATATTTTGTGTATCGATACAT
Found at i:124962 original size:19 final size:19
Alignment explanation
Indices: 124905--124968 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
124895 TACAAGCCAA
*
124905 TGTATCGATACAATTTTTTG
1 TGTATCGATAC-ATATTTTG
124925 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
124938 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
124957 TGTATCGATACA
1 TGTATCGATACA
124969 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
19 12 0.32
20 11 0.30
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:129652 original size:15 final size:15
Alignment explanation
Indices: 129632--129662 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
129622 ATTTTGTTTG
*
129632 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
129647 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
129662 G
1 G
129663 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:133746 original size:13 final size:13
Alignment explanation
Indices: 133728--133753 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
133718 CAATTTTTTG
133728 TGTATCGATACAT
1 TGTATCGATACAT
133741 TGTATCGATACAT
1 TGTATCGATACAT
133754 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:133764 original size:32 final size:33
Alignment explanation
Indices: 133708--133771 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
133698 TACAAGCCAA
*
133708 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATATTTTGTGTATCGATACAT
133741 TGTATCGATAC-ATATTTTGTGTATCGATACA
1 TGTATCGATACAATATTTTGTGTATCGATACA
133772 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATATTTTGTGTATCGATACAT
Found at i:133765 original size:19 final size:19
Alignment explanation
Indices: 133708--133771 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
133698 TACAAGCCAA
*
133708 TGTATCGATACAATTTTTTG
1 TGTATCGATAC-ATATTTTG
133728 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
133741 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
133760 TGTATCGATACA
1 TGTATCGATACA
133772 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
19 12 0.32
20 11 0.30
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:139761 original size:20 final size:18
Alignment explanation
Indices: 139694--139766 Score: 62
Period size: 20 Copynumber: 3.9 Consensus size: 18
139684 GAAAAAAAAA
139694 ATTTCAAATGTATCGATAC
1 ATTT-AAATGTATCGATAC
*
139713 ATTGTAGATGTA--GATAC
1 ATT-TAAATGTATCGATAC
*
139730 A-TTATGATGTATCGATAC
1 ATTTA-AATGTATCGATAC
139748 ATTCTACAATGTATCGATA
1 ATT-TA-AATGTATCGATA
139767 TAGGTCCCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
15 2 0.04
16 7 0.16
17 6 0.13
18 6 0.13
19 10 0.22
20 14 0.31
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
ATTTAAATGTATCGATAC
Found at i:139831 original size:19 final size:18
Alignment explanation
Indices: 139807--139870 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
139797 CAACAATTTA
139807 TATCGATACATAAGTTTTG
1 TATCGATACATAAG-TTTG
139826 TATCGATAC--AA---TG
1 TATCGATACATAAGTTTG
139839 TATCGATACATAAGTATTG
1 TATCGATACATAAGT-TTG
139858 TATCGATACATAA
1 TATCGATACATAA
139871 TTAGCTACTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
19 24 0.62
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
TATCGATACATAAGTTTG
Found at i:139842 original size:13 final size:13
Alignment explanation
Indices: 139824--139848 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
139814 ACATAAGTTT
139824 TGTATCGATACAA
1 TGTATCGATACAA
139837 TGTATCGATACA
1 TGTATCGATACA
139849 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Done.