Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold200
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 649609
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 4 of 5
Found at i:464150 original size:13 final size:13
Alignment explanation
Indices: 464132--464156 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
464122 ACAATACTTA
464132 TGTATCGATACAT
1 TGTATCGATACAT
464145 TGTATCGATACA
1 TGTATCGATACA
464157 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:464154 original size:32 final size:32
Alignment explanation
Indices: 464113--464175 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
464103 TAGCTAATTA
*
464113 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
464145 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
464176 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:465554 original size:7 final size:7
Alignment explanation
Indices: 465544--465635 Score: 55
Period size: 7 Copynumber: 12.7 Consensus size: 7
465534 ACCTTGAACC
465544 AAAAAAG
1 AAAAAAG
465551 AAAAAA-
1 AAAAAAG
465557 AAAAGGAAGG
1 AAAA--AA-G
465567 AGAAAAGAG
1 A-AAAA-AG
*
465576 AAAAGAG
1 AAAAAAG
465583 AAAAAAG
1 AAAAAAG
465590 AAAAAAG
1 AAAAAAG
*
465597 AAGAAA-
1 AAAAAAG
* *
465603 AAGAAGG
1 AAAAAAG
*
465610 AGAGAAA-
1 A-AAAAAG
465617 AAAAAAG
1 AAAAAAG
*
465624 AAGAAAG
1 AAAAAAG
465631 AAAAA
1 AAAAA
465636 TGATAGTTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
6 13 0.19
7 38 0.56
8 9 0.13
9 3 0.04
10 2 0.03
11 3 0.04
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:465587 original size:30 final size:29
Alignment explanation
Indices: 465546--465635 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 29
465536 CTTGAACCAA
*
465546 AAAAGA-AAAAAAAAAGGAAGGAGAAAAGAG
1 AAAAGAGAAAAAAAAA-GAAGAAGAAAA-AG
*
465576 AAAAGAGAAAAAAGAAAAAAGAAGAAAAAG
1 AAAAGAGAAAAAA-AAAGAAGAAGAAAAAG
*
465606 AAGGAGAGAAAAAAAAAGAAGAAAGAAAAA
1 AA-AAGAGAAAAAAAAAGAAG-AAGAAAAA
465636 TGATAGTTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
30 16 0.31
31 33 0.63
32 3 0.06
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (29 bp):
AAAAGAGAAAAAAAAAGAAGAAGAAAAAG
Found at i:465588 original size:16 final size:17
Alignment explanation
Indices: 465551--465632 Score: 62
Period size: 16 Copynumber: 4.9 Consensus size: 17
465541 ACCAAAAAAG
*
465551 AAAAA-AAAAAGGAAGGA
1 AAAAAGAAAAAAGAA-GA
* *
465568 GAAAAGAGAAAAG-AGA
1 AAAAAGAAAAAAGAAGA
465584 AAAAAGAAAAAAGAAG-
1 AAAAAGAAAAAAGAAGA
* * *
465600 AAAAAGAAGGAGAGAAAA
1 AAAAAGAA-AAAAGAAGA
*
465618 AAAAAGAAGAAAGAA
1 AAAAAGAAAAAAGAA
465633 AAATGATAGT
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
16 21 0.40
17 18 0.35
18 13 0.25
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAGAAGA
Found at i:465621 original size:18 final size:17
Alignment explanation
Indices: 465583--465635 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
465573 GAGAAAAGAG
*
465583 AAAAAAGAAAAAAG-AA
1 AAAAAAGAAGAAAGAAA
* *
465599 GAAAAAGAAGGAGAGAAA
1 AAAAAAGAA-GAAAGAAA
465617 AAAAAAGAAGAAAGAAA
1 AAAAAAGAAGAAAGAAA
465634 AA
1 AA
465636 TGATAGTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 8 0.27
17 12 0.40
18 10 0.33
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAGAAAGAAA
Found at i:465623 original size:43 final size:47
Alignment explanation
Indices: 465544--465629 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 47
465534 ACCTTGAACC
465544 AAAAAAGAAAAAAAAAAGGAAGGAGAAAAGAGAAAAG-AGAAAAAAG
1 AAAAAAGAAAAAAAAAAGGAAGGAGAAAAGAGAAAAGAAGAAAAAAG
*
465590 AAAAAAGAAGAAAAAGAAGG-A-GAGAAAA-A-AAAAGAAGAAA
1 AAAAAAGAA-AAAAAAAAGGAAGGAGAAAAGAGAAAAGAAGAAA
465630 GAAAAATGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
43 5 0.14
44 6 0.16
45 7 0.19
46 10 0.27
47 9 0.24
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (47 bp):
AAAAAAGAAAAAAAAAAGGAAGGAGAAAAGAGAAAAGAAGAAAAAAG
Found at i:465634 original size:14 final size:14
Alignment explanation
Indices: 465574--465635 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
465564 AGGAGAAAAG
* *
465574 AGAAAAGAGAAAAA
1 AGAAAAAAGAAGAA
465588 AGAAAAAAGAAGAA
1 AGAAAAAAGAAGAA
* *
465602 A-AAGAAGGAGAGAA
1 AGAAAAAAGA-AGAA
465616 A-AAAAAAGAAGAA
1 AGAAAAAAGAAGAA
465629 AGAAAAA
1 AGAAAAA
465636 TGATAGTTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.28
14 29 0.73
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (14 bp):
AGAAAAAAGAAGAA
Found at i:468627 original size:18 final size:18
Alignment explanation
Indices: 468604--468708 Score: 131
Period size: 18 Copynumber: 5.8 Consensus size: 18
468594 TAAGATTACA
*
468604 AAAATCTATGATTTTTAG
1 AAAATCTATGATTCTTAG
*
468622 AAAATCTATGATTCCTAG
1 AAAATCTATGATTCTTAG
468640 AAAATCTAATGATTCTTAG
1 AAAATCT-ATGATTCTTAG
* * *
468659 AAAA-CATGTGATTCCTAA
1 AAAATC-TATGATTCTTAG
*
468677 AAAATCTAAGATTCTTAG
1 AAAATCTATGATTCTTAG
468695 AAAATCTATGATTC
1 AAAATCTATGATTC
468709 CTAAAATCAG
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
18 57 0.78
19 16 0.22
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (18 bp):
AAAATCTATGATTCTTAG
Found at i:468659 original size:37 final size:36
Alignment explanation
Indices: 468587--468714 Score: 165
Period size: 37 Copynumber: 3.6 Consensus size: 36
468577 TATTAAGGTT
* * *
468587 GAAAATCTAAGATTAC-AAAAATCT-ATGATTTTTA
1 GAAAATCTATGATTCCTAAAAATCTAATGATTCTTA
468621 GAAAATCTATGATTCCTAGAAAATCTAATGATTCTTA
1 GAAAATCTATGATTCCTA-AAAATCTAATGATTCTTA
*
468658 GAAAA-CATGTGATTCCTAAAAAATCTAA-GATTCTTA
1 GAAAATC-TATGATTCCT-AAAAATCTAATGATTCTTA
468694 GAAAATCTATGATTCCTAAAA
1 GAAAATCTATGATTCCTAAAA
468715 TCAGTGATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
34 14 0.17
35 5 0.06
36 30 0.36
37 33 0.40
38 1 0.01
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (36 bp):
GAAAATCTATGATTCCTAAAAATCTAATGATTCTTA
Found at i:468697 original size:36 final size:36
Alignment explanation
Indices: 468587--468714 Score: 163
Period size: 36 Copynumber: 3.6 Consensus size: 36
468577 TATTAAGGTT
* * * *
468587 GAAAATCTAAGATTAC--AAAAATCTATGATTTTTA
1 GAAAATCTATGATTCCTAAAAAATCTAAGATTCTTA
*
468621 GAAAATCTATGATTCCTAGAAAATCTAATGATTCTTA
1 GAAAATCTATGATTCCTAAAAAATCTAA-GATTCTTA
*
468658 GAAAA-CATGTGATTCCTAAAAAATCTAAGATTCTTA
1 GAAAATC-TATGATTCCTAAAAAATCTAAGATTCTTA
468694 GAAAATCTATGATTCCTAAAA
1 GAAAATCTATGATTCCTAAAA
468715 TCAGTGATTT
Statistics
Matches: 81, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
34 14 0.17
36 35 0.43
37 32 0.40
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (36 bp):
GAAAATCTATGATTCCTAAAAAATCTAAGATTCTTA
Found at i:473455 original size:10 final size:10
Alignment explanation
Indices: 473436--473466 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
473426 AATCTCATTT
473436 TCACTGTTCA
1 TCACTGTTCA
*
473446 TCACTATTCA
1 TCACTGTTCA
473456 TCACTGTTCA
1 TCACTGTTCA
473466 T
1 T
473467 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:473488 original size:21 final size:22
Alignment explanation
Indices: 473454--473509 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
473444 CATCACTATT
473454 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
473476 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
473497 CATCACTGTTCAT
1 CATCACTGTTCAT
473510 CACTATTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:473541 original size:34 final size:32
Alignment explanation
Indices: 473476--473560 Score: 127
Period size: 34 Copynumber: 2.6 Consensus size: 32
473466 TGTATCGATA
* *
473476 CATCACT-TTCATGTATCGATACATCACTGTT
1 CATCACTATTCATGTATCGAAAAATCACTGTT
473507 CATCACTATTCATGTATCGTTAAAAATCACTGTT
1 CATCACTATTCATGTATCG--AAAAATCACTGTT
473541 CATCACTATTCATGTATCGA
1 CATCACTATTCATGTATCGA
473561 TACATATTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
31 7 0.14
32 12 0.24
34 30 0.61
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (32 bp):
CATCACTATTCATGTATCGAAAAATCACTGTT
Found at i:473590 original size:13 final size:13
Alignment explanation
Indices: 473572--473597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
473562 ACATATTTGT
473572 GTGTATCGATACA
1 GTGTATCGATACA
473585 GTGTATCGATACA
1 GTGTATCGATACA
473598 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:474090 original size:93 final size:92
Alignment explanation
Indices: 473904--474124 Score: 225
Period size: 93 Copynumber: 2.4 Consensus size: 92
473894 CTTTGGGGAA
*
473904 ACTCCCACCCCACTAT-TCTAAAGGGATACTCCAA-CCACTGTTTACACTAAAATTCAATTTATA
1 ACTCCAACCCCACTATCTC-AAAGGGATACTCCAACCCACTGTTTACACTAAAATTCAATTTATA
* * *
473967 GAAACATCAAATTATCATTTCCGAGGAT
65 GAAACATCAAATTATCATCTCCAAGAAT
* * *
473995 ACTCCAACCCCACTATCTCCAAGGCGATACTCCAACCCTA-TTTTTGCACTAAAATTCAATTTAT
1 ACTCCAACCCCACTATCTCAAAGG-GATACTCCAACCC-ACTGTTTACACTAAAATTCAATTTAT
* * * *
474059 -GAAAATATTAATTTTTCATCTCCAAGAAT
64 AG-AAACATCAAATTATCATCTCCAAGAAT
* * * * *
474088 ACTCCAACCCTACCATCTCTGAGGGGATGCTCCAACC
1 ACTCCAACCCCACTATCTC-AAAGGGATACTCCAACC
474125 TCGTTTTTAC
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
91 19 0.18
92 13 0.12
93 72 0.67
94 4 0.04
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.29
Consensus pattern (92 bp):
ACTCCAACCCCACTATCTCAAAGGGATACTCCAACCCACTGTTTACACTAAAATTCAATTTATAG
AAACATCAAATTATCATCTCCAAGAAT
Found at i:477138 original size:19 final size:19
Alignment explanation
Indices: 477110--477172 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
477100 AAACAGTAAC
*
477110 TGTATTGATACATAAATGT
1 TGTATCGATACATAAATGT
477129 TGTATCGATAC---AA---
1 TGTATCGATACATAAATGT
*
477142 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAATGT
477161 TGTATCGATACA
1 TGTATCGATACA
477173 ATGTATTGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 11 0.31
16 3 0.08
19 22 0.61
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAATGT
Found at i:477147 original size:13 final size:13
Alignment explanation
Indices: 477129--477153 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
477119 ACATAAATGT
477129 TGTATCGATACAA
1 TGTATCGATACAA
477142 TGTATCGATACA
1 TGTATCGATACA
477154 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:477152 original size:32 final size:32
Alignment explanation
Indices: 477110--477178 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
477100 AAACAGTAAC
*
477110 TGTATTGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
*
477142 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
477174 TGTAT
1 TGTAT
477179 TGCTACGAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAATGTTGTATCGATACAA
Found at i:484242 original size:11 final size:11
Alignment explanation
Indices: 484228--484291 Score: 83
Period size: 11 Copynumber: 5.7 Consensus size: 11
484218 TAAAAACACA
484228 AAAAAAAAAAC
1 AAAAAAAAAAC
* *
484239 AAAAACAACAC
1 AAAAAAAAAAC
*
484250 AAAAAAAAACC
1 AAAAAAAAAAC
484261 AAAAAACAAAAC
1 AAAAAA-AAAAC
*
484273 AAAAAAACAAC
1 AAAAAAAAAAC
484284 AAAAAAAA
1 AAAAAAAA
484292 GTGCAAAGGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
11 34 0.77
12 10 0.23
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:484242 original size:20 final size:20
Alignment explanation
Indices: 484219--484282 Score: 85
Period size: 20 Copynumber: 3.1 Consensus size: 20
484209 CCTCAAAAGT
484219 AAAAACACAAAAAAAAAAAC
1 AAAAACACAAAAAAAAAAAC
*
484239 AAAAACAACACAAAAAAAAACC
1 AAAAAC-ACA-AAAAAAAAAAC
484261 AAAAA-ACAAAACAAAAAAAC
1 AAAAACACAAAA-AAAAAAAC
484281 AA
1 AA
484283 CAAAAAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 3 0.08
20 18 0.46
21 3 0.08
22 15 0.38
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAACACAAAAAAAAAAAC
Found at i:484264 original size:34 final size:35
Alignment explanation
Indices: 484219--484291 Score: 114
Period size: 34 Copynumber: 2.1 Consensus size: 35
484209 CCTCAAAAGT
484219 AAAAACACAAAAAAAAAAACAAAAACAAC-ACAAAA
1 AAAAACACAAAAAAAAAAACAAAAA-AACAACAAAA
*
484254 AAAAAC-CAAAAAACAAAACAAAAAAACAACAAAA
1 AAAAACACAAAAAAAAAAACAAAAAAACAACAAAA
484288 AAAA
1 AAAA
484292 GTGCAAAGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 3 0.08
34 27 0.75
35 6 0.17
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (35 bp):
AAAAACACAAAAAAAAAAACAAAAAAACAACAAAA
Found at i:484289 original size:23 final size:22
Alignment explanation
Indices: 484219--484289 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 22
484209 CCTCAAAAGT
*
484219 AAAAACACAA-AAAAAAAAAC-
1 AAAAACAAAACAAAAAAAAACA
*
484239 AAAAACAACACAAAAAAAAACCA
1 AAAAACAAAACAAAAAAAAA-CA
484262 AAAAACAAAACAAAAAAACAACA
1 AAAAACAAAACAAAAAAA-AACA
484285 AAAAA
1 AAAAA
484290 AAGTGCAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
20 8 0.18
21 9 0.20
22 1 0.02
23 24 0.55
24 2 0.05
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (22 bp):
AAAAACAAAACAAAAAAAAACA
Found at i:485555 original size:30 final size:30
Alignment explanation
Indices: 485477--485846 Score: 413
Period size: 30 Copynumber: 12.0 Consensus size: 30
485467 AATTCTTCAA
* *
485477 ATCTCTCTTCTCAAAGTCCACGATTTAGTGGC
1 ATCTCT-TTC-CAAAGTCCACGACTCAGTGGC
* *
485509 ATCTTTTTCTCAAAGTCCACAACTCAGTGGC
1 ATCTCTTTC-CAAAGTCCACGACTCAGTGGC
485540 ATCTCTTTCCAAAGTCCACGACTCAGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGC
* *
485570 ATCTCTTCTTCAAAGTCCACGACTAAGTGGC
1 ATCTCTT-TCCAAAGTCCACGACTCAGTGGC
* * *
485601 GTCTTTTTTCTTAAAGTCCACGACTCAGTGGC
1 ATC-TCTTTC-CAAAGTCCACGACTCAGTGGC
* *
485633 ATCT-TTTCTTCCAAGTCCATGACTCAGTGGC
1 ATCTCTTTC--CAAAGTCCACGACTCAGTGGC
*
485664 ATCTCTTTCCAAAGTCCACGACTTAGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGC
*
485694 ATCTC-TTCTCAAAGTCCACGATTCAGTGGC
1 ATCTCTTTC-CAAAGTCCACGACTCAGTGGC
* * *
485724 ATCTTTTTCTCAAAGTCCACAACTTAGTGGC
1 ATCTCTTTC-CAAAGTCCACGACTCAGTGGC
* *
485755 ATCTCTTTTCAAAGTCCACAACTCAGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGC
*
485785 ATCTCTTTTCAAAGTCCACGACTCAGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGC
* * *
485815 ATCT-TTTCTTCAAAGCCCACAACTCTGTGGC
1 ATCTCTTTC--CAAAGTCCACGACTCAGTGGC
485846 A
1 A
485847 CCTTTTTAGA
Statistics
Matches: 295, Mismatches: 34, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
29 6 0.02
30 130 0.44
31 126 0.43
32 33 0.11
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
ATCTCTTTCCAAAGTCCACGACTCAGTGGC
Found at i:485583 original size:61 final size:61
Alignment explanation
Indices: 485477--485965 Score: 469
Period size: 61 Copynumber: 8.1 Consensus size: 61
485467 AATTCTTCAA
* * *
485477 ATCTCTCTTCTCAAAGTCCACGATTTAGTGGCATCT-TTTTCTCAAAGTCCACAACTCAGTGGC
1 ATCTCT-TTC-CAAAGTCCACGACTCAGTGGCATCTCTTCT-TCAAAGTCCACAACTCAGTGGC
* *
485540 ATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACGACTAAGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
* * * * * **
485601 GTCTTTTTTCTTAAAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCATGACTCAGTGGC
1 ATC-TCTTTC-CAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
* * *
485664 ATCTCTTTCCAAAGTCCACGACTTAGTGGCATCTCTTC-TCAAAGTCCACGATTCAGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
* * *
485724 ATCTTTTTCTCAAAGTCCACAACTTAGTGGCATCTCTT-TTCAAAGTCCACAACTCAGTGGC
1 ATCTCTTTC-CAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
* * * *
485785 ATCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCTGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
** * * * * * * *
485846 A-C-CTTTTTAGAGCCCACAACTCCGTGGCA-CCCTT-TT-AAAGCCCACAACTCCGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
* * * * * * ** *
485902 ATC-CATT-C-AAGTCCACAACTCCGTGACACCTTGTTCCTTTTAAGTCCACAACTCCGTGGC
1 ATCTCTTTCCAAAGTCCACGACTCAGTGGCATC-TCTT-CTTCAAAGTCCACAACTCAGTGGC
485962 ATCT
1 ATCT
485966 TTCTCCTTTT
Statistics
Matches: 365, Mismatches: 48, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
55 17 0.05
56 21 0.06
57 8 0.02
58 3 0.01
59 24 0.07
60 74 0.20
61 147 0.40
62 16 0.04
63 55 0.15
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (61 bp):
ATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGTCCACAACTCAGTGGC
Found at i:485729 original size:91 final size:92
Alignment explanation
Indices: 485477--485846 Score: 471
Period size: 91 Copynumber: 4.0 Consensus size: 92
485467 AATTCTTCAA
* * *
485477 ATCTCTCTTCTCAAAGTCCACGATTTAGTGGCATCTTTTTCTCAAAGTCCACAACTCAGTGGCAT
1 ATCTCT-TTC-CAAAGTCCACGACTTAGTGGCATCTTCTTCTCAAAGTCCACGACTCAGTGGCAT
485542 CTCTTTC--CAAAGTCCACGACTCAGTGGC
64 CT-TTTCTTCAAAGTCCACGACTCAGTGGC
* * * * *
485570 ATCTCTTCTTCAAAGTCCACGACTAAGTGGCGTCTTTTTTCTTAAAGTCCACGACTCAGTGGCAT
1 ATCTCTT-TCCAAAGTCCACGACTTAGTGGCATC-TTCTTCTCAAAGTCCACGACTCAGTGGCAT
* *
485635 CTTTTCTTCCAAGTCCATGACTCAGTGGC
64 CTTTTCTTCAAAGTCCACGACTCAGTGGC
*
485664 ATCTCTTTCCAAAGTCCACGACTTAGTGGCATC-TCTTCTCAAAGTCCACGATTCAGTGGCATCT
1 ATCTCTTTCCAAAGTCCACGACTTAGTGGCATCTTCTTCTCAAAGTCCACGACTCAGTGGCATCT
* *
485728 TTT-TCTCAAAGTCCACAACTTAGTGGC
66 TTTCT-TCAAAGTCCACGACTCAGTGGC
* * * *
485755 ATCTCTTTTCAAAGTCCACAACTCAGTGGCATC-TCTTTTCAAAGTCCACGACTCAGTGGCATCT
1 ATCTCTTTCCAAAGTCCACGACTTAGTGGCATCTTCTTCTCAAAGTCCACGACTCAGTGGCATCT
* * *
485819 TTTCTTCAAAGCCCACAACTCTGTGGC
66 TTTCTTCAAAGTCCACGACTCAGTGGC
485846 A
1 A
485847 CCTTTTTAGA
Statistics
Matches: 245, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
90 1 0.00
91 131 0.53
92 27 0.11
93 60 0.24
94 26 0.11
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (92 bp):
ATCTCTTTCCAAAGTCCACGACTTAGTGGCATCTTCTTCTCAAAGTCCACGACTCAGTGGCATCT
TTTCTTCAAAGTCCACGACTCAGTGGC
Found at i:485866 original size:28 final size:28
Alignment explanation
Indices: 485735--485931 Score: 144
Period size: 30 Copynumber: 6.8 Consensus size: 28
485725 TCTTTTTCTC
* ** *
485735 AAAGTCCACAACTTAGTGGCATCTCTTTT
1 AAAGCCCACAACTCCGTGGCA-CCCTTTT
* * *
485764 CAAAGTCCACAACTCAGTGGCATCTCTTTT
1 -AAAGCCCACAACTCCGTGGCA-CCCTTTT
* * * **
485794 CAAAGTCCACGACTCAGTGGCATCTTTTCTT
1 -AAAGCCCACAACTCCGTGGCA-CCCTT-TT
* *
485825 CAAAGCCCACAACTCTGTGGCACCTTTTT
1 -AAAGCCCACAACTCCGTGGCACCCTTTT
*
485854 AGAGCCCACAACTCCGTGGCACCCTTTT
1 AAAGCCCACAACTCCGTGGCACCCTTTT
* *
485882 AAAGCCCACAACTCCGTGGCATCC-ATT
1 AAAGCCCACAACTCCGTGGCACCCTTTT
* * *
485909 CAAGTCCACAACTCCGTGACACC
1 AAAGCCCACAACTCCGTGGCACC
485932 TTGTTCCTTT
Statistics
Matches: 149, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.14
28 47 0.32
29 2 0.01
30 58 0.39
31 21 0.14
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.26
Consensus pattern (28 bp):
AAAGCCCACAACTCCGTGGCACCCTTTT
Found at i:485952 original size:33 final size:33
Alignment explanation
Indices: 485910--486000 Score: 112
Period size: 33 Copynumber: 2.7 Consensus size: 33
485900 GCATCCATTC
485910 AAGTCCACAACTCCGTGACACCTTGT-TCCTTTT
1 AAGTCCACAACTCCGTGACACCTT-TCTCCTTTT
* *
485943 AAGTCCACAACTCCGTGGCATCTTTCTCCTTTT
1 AAGTCCACAACTCCGTGACACCTTTCTCCTTTT
* * *
485976 AAGCCCACAAGTCAGTGACAACCTT
1 AAGTCCACAACTCCGTGAC-ACCTT
486001 CAAAAGCACA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
32 1 0.02
33 44 0.90
34 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGACACCTTTCTCCTTTT
Found at i:486012 original size:28 final size:29
Alignment explanation
Indices: 485976--486046 Score: 74
Period size: 28 Copynumber: 2.4 Consensus size: 29
485966 TTCTCCTTTT
*
485976 AAGCCCACAAGTCAGTGACAA-CC-TTCAA
1 AAGCACACAAGTCAGT-ACAACCCTTTCAA
**
486004 AAGCACACAAGTTGGTACAACCCTTTCAA
1 AAGCACACAAGTCAGTACAACCCTTTCAA
486033 AAGTCCACACAAGT
1 AAG--CACACAAGT
486047 TGGTGGCGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.11
28 15 0.42
29 8 0.22
31 9 0.25
ACGTcount: A:0.39, C:0.30, G:0.14, T:0.17
Consensus pattern (29 bp):
AAGCACACAAGTCAGTACAACCCTTTCAA
Found at i:486181 original size:49 final size:49
Alignment explanation
Indices: 486060--486680 Score: 577
Period size: 49 Copynumber: 12.9 Consensus size: 49
486050 TGGCGTCTTC
486060 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* *
486108 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* * * *
486157 TTTTAAGTCCAATATCGTTAGCCTTGAATCAGCATATTGGCACCTTTGTCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCAT
* *
486209 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-GT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* * * * * *
486257 CTTTAAGACCAATGTTGTTGGCCTTGAATCAACACATTGG------CA-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* * * * * *
486299 ---GAAGCCCAATGTTGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* ** *
486345 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGTGCCTTTATTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCAT
* * *
486397 CTTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCAT
1 C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* *
486447 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCAT
* *
486499 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCACCTT-GT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* * ** * *
486547 CTTTAAGACCAATGTCATTGGCCTTGAATCAACACATTGG------CA-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* * * * *
486589 ---TAAGCCCAATGTCCCTGGCCTTGAATCAGCACATTGGCATCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* ** *
486635 CTTTAAGTCCAATATTGCTGGCCTTGAATCAATACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
486681 TGTCCTTTGT
Statistics
Matches: 474, Mismatches: 66, Indels: 65
0.78 0.11 0.11
Matches are distributed among these distances:
39 67 0.14
45 4 0.01
48 108 0.23
49 152 0.32
50 6 0.01
51 4 0.01
52 94 0.20
53 39 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
Found at i:486480 original size:102 final size:101
Alignment explanation
Indices: 486304--486737 Score: 455
Period size: 102 Copynumber: 4.3 Consensus size: 101
486294 TGGCAGAAGC
* * *
486304 CCAATGTTGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
* * * *
486369 TGAATCAGCATATTGGTGCCTTTATTATCTTTTAAGT
66 TGAATCAACACATTGGTGCCTTTGTCA-CTTTTAAGT
*
486406 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
* * * *
486471 TGAATCAGCATATTGGCGCCTTTGTCACCTTTAAGT
66 TGAATCAACACATTGGTGCCTTTGTCACTTTTAAGT
* ** * * * **
486507 CCAATATCGCTGGCCTTGAATCAGCATGTTGGCACCTT-GTCTTTAAGACCAATGTCATTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
*
486571 TGAATCAACACA-T--TG-----G-CA----TAAGC
66 TGAATCAACACATTGGTGCCTTTGTCACTTTTAAGT
* * *
486594 CCAATGTCCCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATTGCTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
* *
486659 TGAATCAATACATTGGCACCTTTGTCCTTTGTCCCCTTTTAAGT
66 TGAATCAACACATTGG------TG-CCTTTGT-CACTTTTAAGT
486703 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
486738 TGTTAGGATC
Statistics
Matches: 273, Mismatches: 37, Indels: 37
0.79 0.11 0.11
Matches are distributed among these distances:
87 37 0.14
88 31 0.11
89 1 0.00
91 2 0.01
92 1 0.00
97 3 0.01
99 1 0.00
100 31 0.11
101 42 0.15
102 85 0.31
103 1 0.00
105 1 0.00
109 37 0.14
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (101 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCT
TGAATCAACACATTGGTGCCTTTGTCACTTTTAAGT
Found at i:486575 original size:290 final size:289
Alignment explanation
Indices: 486060--486737 Score: 1013
Period size: 290 Copynumber: 2.3 Consensus size: 289
486050 TGGCGTCTTC
** *
486060 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC---TCATC-TTTAAGACCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCATCTTTTAAGTCCAAT
* * *
486121 GTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATTTTTAAGTCCAATATCGTTAGCCTTGAAT
66 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCTTGAAT
486186 CAGCATATTGGCACCTTTGTCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
131 CAGCATATTGGCACCTTTGTCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
** ***
486251 CCTTGTCTTTAAGACCAATGTTGTTGGCCTTGAATCAACACATTGGCAGAAGCCCAATGTTGTTG
196 CCTTGTCTTTAAGACCAATGTCATTGGCCTTGAATCAACACATTGGCAGAAGCCCAATGTCCCTG
486316 GCCTTGAATCAGCACATTGGCACCTTCAT
261 GCCTTGAATCAGCACATTGGCACCTTCAT
* *
486345 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGTGCCTTTATTATCTTTTAAGTCCAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTT-TCATCTTTTAAGTCCAA
* *
486410 TGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAA
65 TGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCTTGAA
* * *
486475 TCAGCATATTGGCGCCTTTGTCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGC
130 TCAGCATATTGGCACCTTTGTCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGC
*
486540 ACCTTGTCTTTAAGACCAATGTCATTGGCCTTGAATCAACACATTGGCATAAGCCCAATGTCCCT
195 ACCTTGTCTTTAAGACCAATGTCATTGGCCTTGAATCAACACATTGGCAGAAGCCCAATGTCCCT
*
486605 GGCCTTGAATCAGCACATTGGCATCTTCAT
260 GGCCTTGAATCAGCACATTGGCACCTTCAT
* ** * **
486635 CTTTAAGTCCAATATTGCTGGCCTTGAATCAATACATTGGCACCTTTGTCCTTTGTCCCCTTTTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG------TG-CCTTT-TCATCTTTTA
486700 AGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
58 AGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
486738 TGTTAGGATC
Statistics
Matches: 351, Mismatches: 30, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
285 41 0.12
289 4 0.01
290 255 0.73
296 2 0.01
297 49 0.14
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (289 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTTCATCTTTTAAGTCCAAT
GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCTTGAAT
CAGCATATTGGCACCTTTGTCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
CCTTGTCTTTAAGACCAATGTCATTGGCCTTGAATCAACACATTGGCAGAAGCCCAATGTCCCTG
GCCTTGAATCAGCACATTGGCACCTTCAT
Found at i:486609 original size:39 final size:39
Alignment explanation
Indices: 486550--486628 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
486540 ACCTTGTCTT
*
486550 TAAGACCAATGTCATTGGCCTTGAATCAACACATTGGCA
1 TAAGACCAATGTCACTGGCCTTGAATCAACACATTGGCA
* * *
486589 TAAGCCCAATGTCCCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATGTCACTGGCCTTGAATCAACACATTGGCA
486628 T
1 T
486629 CTTCATCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (39 bp):
TAAGACCAATGTCACTGGCCTTGAATCAACACATTGGCA
Found at i:486672 original size:88 final size:87
Alignment explanation
Indices: 486502--486676 Score: 224
Period size: 87 Copynumber: 2.0 Consensus size: 87
486492 TTGTCACCTT
* * ** * * *
486502 TAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCACCTTGTCTTTAAGACCAATGTCATTG
1 TAAGCCCAATATCCCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATATCACTG
486567 GCCTTGAATCAACACATTGGCA
66 GCCTTGAATCAACACATTGGCA
* * * **
486589 TAAGCCCAATGTCCCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATTGCT
1 TAAGCCCAATATCCCTGGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGACCAATATCACT
*
486654 GGCCTTGAATCAATACATTGGCA
65 GGCCTTGAATCAACACATTGGCA
486677 CCTTTGTCCT
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
87 37 0.50
88 37 0.50
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (87 bp):
TAAGCCCAATATCCCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGACCAATATCACTG
GCCTTGAATCAACACATTGGCA
Found at i:487052 original size:20 final size:20
Alignment explanation
Indices: 487029--487101 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
487019 ACAATTCAAA
487029 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
487049 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
487070 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
487090 GTATCGATACAT
1 GTATCGATACAT
487102 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:487073 original size:21 final size:21
Alignment explanation
Indices: 487047--487122 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
487037 ACATGTTGCA
487047 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
487068 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
487088 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
487109 ATGTATCGATACAT
1 ATGTATCGATACAT
487123 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:487080 original size:41 final size:41
Alignment explanation
Indices: 487029--487122 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
487019 ACAATTCAAA
*
487029 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
487070 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
487111 GTATCGATACAT
1 GTATCGATACAT
487123 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:487179 original size:13 final size:13
Alignment explanation
Indices: 487161--487186 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
487151 TACAGCAAGT
487161 ATGTATCGATACA
1 ATGTATCGATACA
487174 ATGTATCGATACA
1 ATGTATCGATACA
487187 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:491276 original size:16 final size:16
Alignment explanation
Indices: 491240--491276 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
491230 GATAAAAATA
491240 TCCAAAATGAGAAAGC
1 TCCAAAATGAGAAAGC
491256 T-CAAAATGA-AGAAGC
1 TCCAAAATGAGA-AAGC
491271 TCCAAA
1 TCCAAA
491277 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.05
15 13 0.68
16 5 0.26
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (16 bp):
TCCAAAATGAGAAAGC
Found at i:493120 original size:15 final size:15
Alignment explanation
Indices: 493100--493130 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
493090 TAAAAATGTC
*
493100 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
493115 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
493130 C
1 C
493131 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:495223 original size:20 final size:21
Alignment explanation
Indices: 495145--495222 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
495135 ATGTCCAAAA
*
495145 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
495165 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
495189 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
495210 TGTATCGATACAT
1 TGTATCGATACAT
495223 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:495227 original size:13 final size:13
Alignment explanation
Indices: 495209--495247 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
495199 ACATTTTTTG
495209 TTGTATCGATACA
1 TTGTATCGATACA
495222 TTGTATCGATACA
1 TTGTATCGATACA
*
495235 CTGTATCGATACA
1 TTGTATCGATACA
495248 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:497075 original size:30 final size:30
Alignment explanation
Indices: 497041--497101 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
497031 AATTTTGATA
497041 TGAATTACTTGATTAAGGGGGAGATTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTT
497071 TGAATTACTTGATTAAGGGGGAGATTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTT
497101 T
1 T
497102 TAAACGGGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.44
Consensus pattern (30 bp):
TGAATTACTTGATTAAGGGGGAGATTTTTT
Found at i:497743 original size:20 final size:20
Alignment explanation
Indices: 497720--497792 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
497710 ACAATTCAAA
497720 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
497740 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
497761 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
497781 GTATCGATACAT
1 GTATCGATACAT
497793 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:497764 original size:21 final size:21
Alignment explanation
Indices: 497738--497813 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
497728 ACATGTTGCA
497738 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
497759 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
497779 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
497800 ATGTATCGATACAT
1 ATGTATCGATACAT
497814 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:497771 original size:41 final size:41
Alignment explanation
Indices: 497720--497813 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
497710 ACAATTCAAA
*
497720 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
497761 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
497802 GTATCGATACAT
1 GTATCGATACAT
497814 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:497870 original size:13 final size:13
Alignment explanation
Indices: 497852--497877 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
497842 TACAGCAAGT
497852 ATGTATCGATACA
1 ATGTATCGATACA
497865 ATGTATCGATACA
1 ATGTATCGATACA
497878 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:498757 original size:49 final size:49
Alignment explanation
Indices: 498625--499166 Score: 557
Period size: 49 Copynumber: 11.0 Consensus size: 49
498615 TAAGCTTTCA
* *
498625 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* *
498674 GGCGCCTTTATCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATT
1 GGCACC--T-TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * * *
498726 AGCACCTTCATCTTTAAGTCTAATATCGCTGGCCTTGAATCAACATATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
** *
498775 GGTGCCTTTATCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATT
1 GGCACC--T-TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * *
498827 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * *
498876 GGCACCTTTGTCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1 GGCACC--T-TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * *
498928 GGAACCTT-GTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* *
498976 GG------CA----TAAGCCCAATGTCGCTGGCCTTGAATCATCACATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * *
499015 GGCATCTTCATCTTTAAGGCCAATGTCGTTGGCCTTGAATCAGCACATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
** * * *
499064 GGCACCTTCATCTTTAAACCCAGTGTCGTTGGCTTTGAATCAGCACATT
1 GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * * *
499113 GGCATTCTTCTCATCTTCAAGTCTAAATGTCGCTAGCCATGAATCAGCACATT
1 GGCA--CCT-TCATCTTTAAGTC-CAATGTCGCTGGCCTTGAATCAGCACATT
499166 G
1 G
499167 TCATTCTTCG
Statistics
Matches: 415, Mismatches: 54, Indels: 44
0.81 0.11 0.09
Matches are distributed among these distances:
39 36 0.09
45 2 0.00
48 36 0.09
49 170 0.41
50 3 0.01
51 5 0.01
52 139 0.33
53 24 0.06
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (49 bp):
GGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
Found at i:498801 original size:101 final size:101
Alignment explanation
Indices: 498625--499166 Score: 587
Period size: 101 Copynumber: 5.5 Consensus size: 101
498615 TAAGCTTTCA
498625 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
1 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
*
498690 TTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATT
66 TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * *
498726 AGCACCTTCATCTTTAAGTCTAATATCGCTGGCCTTGAATCAACATATTGGTGCCTTTATCATCT
1 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
*
498791 TTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATT
66 TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * *
498827 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATTGGCACCTTTGTCACCT
1 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
* *
498892 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
66 TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * * * *
498928 GGAACCTT-GTCTTTAAGACCAATGTCGCTGGCCTTGAATCATCACATT-G-G-------CA---
1 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
* *
498980 -TAAGCCCAATGTCGCTGGCCTTGAATCATCACATT
66 TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * * * *
499015 GGCATCTTCATCTTTAAGGCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACC--T-TCATCT
1 GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
** * * *
499077 TTAAACCCAGTGTCGTTGGCTTTGAATCAGCACATT
66 TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
* * * * * * *
499113 GGCATTCTTCTCATCTTCAAGTCTAAATGTCGCTAGCCATGAATCAGCACATTG
1 GGCA--CCT-TCATCTTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTG
499167 TCATTCTTCG
Statistics
Matches: 377, Mismatches: 49, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
87 37 0.10
88 36 0.10
89 1 0.00
91 2 0.01
94 2 0.01
98 34 0.09
99 1 0.00
100 35 0.09
101 203 0.54
102 26 0.07
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (101 bp):
GGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCT
TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
Found at i:499000 original size:39 final size:39
Alignment explanation
Indices: 498941--499019 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
498931 ACCTTGTCTT
498941 TAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
*
498980 TAAGCCCAATGTCGCTGGCCTTGAATCATCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
499019 T
1 T
499020 CTTCATCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (39 bp):
TAAGACCAATGTCGCTGGCCTTGAATCATCACATTGGCA
Found at i:499053 original size:88 final size:87
Alignment explanation
Indices: 498893--499067 Score: 251
Period size: 88 Copynumber: 2.0 Consensus size: 87
498883 TTGTCACCTT
* * *
498893 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGAACCTTATCTTTAAGACCAATGTCGCTG
*
498958 GCCTTGAATCATCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * * * * *
498980 TAAGCCCAATGTCGCTGGCCTTGAATCATCACATTGGCATCTTCATCTTTAAGGCCAATGTCGTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGAACCTT-ATCTTTAAGACCAATGTCGCT
499045 GGCCTTGAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
499068 CCTTCATCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 37 0.48
88 40 0.52
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGAACCTTATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:499875 original size:21 final size:18
Alignment explanation
Indices: 499851--499904 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 18
499841 TTTCAACAAT
499851 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAA-A-T-A
*
499872 TTGTATCGATACATAAATG
1 TTGTATCGATACA-AAATA
499891 TTGTATCGATACAA
1 TTGTATCGATACAA
499905 TGTATCGATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 13 0.42
20 1 0.03
21 14 0.45
22 2 0.06
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (18 bp):
TTGTATCGATACAAAATA
Found at i:499910 original size:13 final size:13
Alignment explanation
Indices: 499892--499924 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
499882 ACATAAATGT
499892 TGTATCGATACAA
1 TGTATCGATACAA
499905 TGTATCGATACAA
1 TGTATCGATACAA
499918 TGTATCG
1 TGTATCG
499925 CTACGAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:499986 original size:13 final size:13
Alignment explanation
Indices: 499968--499995 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
499958 CATTACTCAA
499968 TGTATCGATACAT
1 TGTATCGATACAT
499981 TGTATCGATACAT
1 TGTATCGATACAT
499994 TG
1 TG
499996 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:499990 original size:33 final size:33
Alignment explanation
Indices: 499948--500014 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
499938 GCCAAGGAAA
499948 TGTATCGATACATT-ACTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
499981 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
500014 T
1 T
500015 TGGGAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:505941 original size:28 final size:29
Alignment explanation
Indices: 505901--505972 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 29
505891 TTCACCTATC
*
505901 GGGGACACTCTAACCTC-ATTATTTTCAA
1 GGGGATACTCTAACCTCTATTATTTTCAA
*
505929 GGGGATACTCTAACC-CTATTATTTTCGA
1 GGGGATACTCTAACCTCTATTATTTTCAA
*
505957 GGGGATACTCCAACCT
1 GGGGATACTCTAACCT
505973 TGGTTCTATT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (29 bp):
GGGGATACTCTAACCTCTATTATTTTCAA
Found at i:506095 original size:80 final size:81
Alignment explanation
Indices: 505929--506256 Score: 371
Period size: 80 Copynumber: 4.1 Consensus size: 81
505919 TTATTTTCAA
* * * ** *
505929 GGGGATACTCTAACCCTATTATTTTCGAGGGGATACTCCAACCTTGGTTCTATTTTTAAAATATC
1 GGGGATACTCAAACCCCATTATTTTCAAGGGGATACTCCAACCCCGATTCTATTTTTAAAATATC
* *
505994 GATTTTTTTCACCACC
66 GATTTTCTTCACCATC
* * * * *
506010 AGGGATACTCAAACCCCATTATTTTTAAGGGGATACTCTAA-CCTGGTTCTATTTTTAAAATATC
1 GGGGATACTCAAACCCCATTATTTTCAAGGGGATACTCCAACCCCGATTCTATTTTTAAAATATC
506074 GATTTTCTTCACCATC
66 GATTTTCTTCACCATC
*** * *
506090 GGGGATACT-ATAACCTTGTTA-TTTCAGAGGGGATACTCTAACCCCAATTCTATTTTTAAAATA
1 GGGGATACTCA-AACCCCATTATTTTCA-AGGGGATACTCCAACCCCGATTCTATTTTTAAAATA
*
506153 TCGATTTCCTTCACCAT-
64 TCGATTTTCTTCACCATC
* * * *
506170 TGGGATACTCCAACCCCATTATTTTTGAA-GGGATACTCCAACCCCGATTCTATTTCTAAAATAT
1 GGGGATACTCAAACCCCATTA-TTTTCAAGGGGATACTCCAACCCCGATTCTATTTTTAAAATAT
*
506234 C-ATTTTCTTCATCATC
65 CGATTTTCTTCACCATC
506250 GGGGATA
1 GGGGATA
506257 TTGCAACCTC
Statistics
Matches: 210, Mismatches: 30, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
79 17 0.08
80 119 0.57
81 70 0.33
82 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (81 bp):
GGGGATACTCAAACCCCATTATTTTCAAGGGGATACTCCAACCCCGATTCTATTTTTAAAATATC
GATTTTCTTCACCATC
Found at i:506223 original size:161 final size:160
Alignment explanation
Indices: 505929--506256 Score: 437
Period size: 161 Copynumber: 2.0 Consensus size: 160
505919 TTATTTTCAA
* ****
505929 GGGGATACTCTAACCCTATTATTTTCGAGGGGATACTCCAACCTTGGTTCTATTTTTAAAATATC
1 GGGGATACTATAACCCTATTATTTTCGAGGGGATACTCCAACCCCAATTCTATTTTTAAAATATC
** * * *
505994 GATTTTTTTCACCACCAGGGATACTCAAACCCCATTATTTTTAAGGGGATACTCTAACCTGGTTC
66 GATTTCCTTCACCACCAGGGATACTCAAACCCCATTATTTTTAAGGGGATACTCCAACCCGATTC
*
506059 TATTTTTAAAATATCGATTTTCTTCACCATC
131 TATTTCTAAAATATC-ATTTTCTTCACCATC
* * *
506090 GGGGATACTATAACCTTGTTA-TTTCAGAGGGGATACTCTAACCCCAATTCTATTTTTAAAATAT
1 GGGGATACTATAACCCTATTATTTTC-GAGGGGATACTCCAACCCCAATTCTATTTTTAAAATAT
** *
506154 CGATTTCCTTCACCA-TTGGGATACTCCAACCCCATTATTTTTGAA-GGGATACTCCAACCCCGA
65 CGATTTCCTTCACCACCAGGGATACTCAAACCCCATTATTTTT-AAGGGGATACTCCAA-CCCGA
*
506217 TTCTATTTCTAAAATATCATTTTCTTCATCATC
128 TTCTATTTCTAAAATATCATTTTCTTCACCATC
506250 GGGGATA
1 GGGGATA
506257 TTGCAACCTC
Statistics
Matches: 146, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
160 60 0.41
161 86 0.59
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (160 bp):
GGGGATACTATAACCCTATTATTTTCGAGGGGATACTCCAACCCCAATTCTATTTTTAAAATATC
GATTTCCTTCACCACCAGGGATACTCAAACCCCATTATTTTTAAGGGGATACTCCAACCCGATTC
TATTTCTAAAATATCATTTTCTTCACCATC
Found at i:506285 original size:160 final size:161
Alignment explanation
Indices: 505948--506295 Score: 443
Period size: 160 Copynumber: 2.2 Consensus size: 161
505938 CTAACCCTAT
* **** **
505948 TATTTTCGAGGGGATACTCCAACCTTGGTTCTATTTTTAAAATATCGATTTTTTTCACCACCAGG
1 TATTTTCGAGGGGATACTCTAACCCCAATTCTATTTTTAAAATATCGATTTCCTTCACCACCAGG
* * * *
506013 GATACTCAAACCCCATTATTTTTAAGGGGATACTCTAACCTGGTTCTATTTTTAAAATATCGATT
66 GATACTCAAACCCCATTATTTTTAAGGGGATACTCCAACCCGATTCTATTTCTAAAATATCGATT
* * *
506078 TTCTTCACCATCGGGGATACTATAACCTTGT
131 TTCTTCACCATCGGGGATACTACAACCTCGG
**
506109 TA-TTTCAGAGGGGATACTCTAACCCCAATTCTATTTTTAAAATATCGATTTCCTTCACCA-TTG
1 TATTTTC-GAGGGGATACTCTAACCCCAATTCTATTTTTAAAATATCGATTTCCTTCACCACCAG
*
506172 GGATACTCCAACCCCATTATTTTTGAA-GGGATACTCCAACCCCGATTCTATTTCTAAAATATC-
65 GGATACTCAAACCCCATTATTTTT-AAGGGGATACTCCAA-CCCGATTCTATTTCTAAAATATCG
* * *
506235 ATTTTCTTCATCATCGGGGATATTGCAACCTCGG
128 ATTTTCTTCACCATCGGGGATACTACAACCTCGG
* *
506269 TATTTTCGAAGGGATACTTTAACCCCA
1 TATTTTCGAGGGGATACTCTAACCCCA
506296 TTATTTCAGT
Statistics
Matches: 161, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
160 87 0.54
161 74 0.46
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (161 bp):
TATTTTCGAGGGGATACTCTAACCCCAATTCTATTTTTAAAATATCGATTTCCTTCACCACCAGG
GATACTCAAACCCCATTATTTTTAAGGGGATACTCCAACCCGATTCTATTTCTAAAATATCGATT
TTCTTCACCATCGGGGATACTACAACCTCGG
Found at i:506293 original size:80 final size:81
Alignment explanation
Indices: 505947--506294 Score: 357
Period size: 80 Copynumber: 4.3 Consensus size: 81
505937 TCTAACCCTA
* * ** * * * *
505947 TTATTTTCGAGGGGATACTCCAACCTTGGTTCTATTTTTAAAATATCGATTTTTTTCACCACCAG
1 TTATTTTCGAAGGGATACTCTAACCCCGATTCTATTTTTAAAATATCGATTTTCTTCACCATCGG
* *
506012 GGATACT-CAAACCCCA
66 GGATACTAC-AACCTCG
* * *
506028 TTATTTT-TAAGGGGATACTCTAA-CCTGGTTCTATTTTTAAAATATCGATTTTCTTCACCATCG
1 TTATTTTCGAA-GGGATACTCTAACCCCGATTCTATTTTTAAAATATCGATTTTCTTCACCATCG
* *
506091 GGGATACTATAACCTTG
65 GGGATACTACAACCTCG
* * * *
506108 TTA-TTTCAGAGGGGATACTCTAACCCCAATTCTATTTTTAAAATATCGATTTCCTTCACCAT-T
1 TTATTTTC-GAAGGGATACTCTAACCCCGATTCTATTTTTAAAATATCGATTTTCTTCACCATCG
* * *
506171 GGGATACTCCAACCCCA
65 GGGATACTACAACCTCG
* * * *
506188 TTATTTTTGAAGGGATACTCCAACCCCGATTCTATTTCTAAAATATC-ATTTTCTTCATCATCGG
1 TTATTTTCGAAGGGATACTCTAACCCCGATTCTATTTTTAAAATATCGATTTTCTTCACCATCGG
* *
506252 GGATATTGCAACCTCG
66 GGATACTACAACCTCG
* *
506268 GTATTTTCGAAGGGATACTTTAACCCC
1 TTATTTTCGAAGGGATACTCTAACCCC
506295 ATTATTTCAG
Statistics
Matches: 221, Mismatches: 39, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
79 15 0.07
80 150 0.68
81 56 0.25
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (81 bp):
TTATTTTCGAAGGGATACTCTAACCCCGATTCTATTTTTAAAATATCGATTTTCTTCACCATCGG
GGATACTACAACCTCG
Found at i:506528 original size:79 final size:76
Alignment explanation
Indices: 506339--506591 Score: 238
Period size: 79 Copynumber: 3.2 Consensus size: 76
506329 ATTTTTAAAG
* * * * * * * *
506339 TATCAAATTTTCACCATTGGGGATACTCTAACCCCATATTTTCGAGAGGATACTCTAACCCTAGG
1 TATCAATTTTTCACC-TTTGGGATACTCTAATCCCGTATTTT-GAGGGGATATTCCAACCCTA-T
** *
506404 TTTTATTTTTAAAG
63 TTTTATTTCCAAAA
* *
506418 TATCGATTTTTCACCATTTGGGATACTCTAATCCGGTCAGTTTTGAGGGGATATTCCAACCCTAT
1 TATCAATTTTTCACC-TTTGGGATACTCTAATCCCGT-A-TTTTGAGGGGATATTCCAACCCTAT
506483 TTTTATTTCCAAAA
63 TTTTATTTCCAAAA
** * *
506497 TATCAATTTTTCACCTTTGAGGATACTCTAATCCCGTTATTTCCAAAGAGATACTT-CAACCCTA
1 TATCAATTTTTCACCTTTG-GGATACTCTAATCCCG-TATTT-TGAGGGGATA-TTCCAACCCTA
506561 TTTTTATTTCCAAAA
62 TTTTTATTTCCAAAA
*
506576 TATCGATTTTTTCACC
1 TATC-AATTTTTCACC
506592 ATCGGGGATA
Statistics
Matches: 147, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 7 0.05
79 105 0.71
80 31 0.21
81 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (76 bp):
TATCAATTTTTCACCTTTGGGATACTCTAATCCCGTATTTTGAGGGGATATTCCAACCCTATTTT
TATTTCCAAAA
Found at i:506624 original size:131 final size:131
Alignment explanation
Indices: 506464--506709 Score: 291
Period size: 131 Copynumber: 1.9 Consensus size: 131
506454 TCAGTTTTGA
* * * ** *
506464 GGGGATATTCCAACCCTATTTTTATTTCCAAAATATCAATTTTTCACC-TTTGAGGATACTCTAA
1 GGGGATACTCCAACCCTAATTTTACTTCCAAAATATCAATTTTTCACCATCCG-GGATACTCCAA
* * * *
506528 TCCCGTTATT-TCCAAAGAGATACTTCAACCCTATTTTTATTTCCAAAATATCGATTTTTTCACC
65 GCCCATTATTAT-CAAAGAGATACTCCAACCCTATTTTTATCTCCAAAATATCGATTTTTTCACC
506592 ATC
129 ATC
* * *
506595 GGGGATACTCCAA-CCTCAATTTTACTTCCAAAGTGTCGATTTTTCACCATCCGGGATACTCCAA
1 GGGGATACTCCAACCCT-AATTTTACTTCCAAAATATCAATTTTTCACCATCCGGGATACTCCAA
* * * *
506659 GCCCATTGTTATCAAGGGGATACTCCAATCCTATTTTTATCTCCAAAATAT
65 GCCCATTATTATCAAAGAGATACTCCAACCCTATTTTTATCTCCAAAATAT
506710 TAAATTTTCC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
130 3 0.03
131 89 0.94
132 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.36
Consensus pattern (131 bp):
GGGGATACTCCAACCCTAATTTTACTTCCAAAATATCAATTTTTCACCATCCGGGATACTCCAAG
CCCATTATTATCAAAGAGATACTCCAACCCTATTTTTATCTCCAAAATATCGATTTTTTCACCAT
C
Found at i:508324 original size:36 final size:36
Alignment explanation
Indices: 508283--508629 Score: 178
Period size: 36 Copynumber: 10.1 Consensus size: 36
508273 TTTAGGGTAC
508283 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
1 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
* * *
508319 TTCATCAATAAAACTTCCAAAGCCT-TTTTTAGGATAT
1 TTCATC-A-AAAACTTTCAAAGCCTCTCTTAAGGATAT
* * *
508356 TTTAGCGAAAAC--T------C-CT-TTAAGGATAT
1 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
* * * * *
508382 TTCATCAAAAAGTTTTAAAGCCTTTCTTAATGATGT
1 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
* * * *
508418 TTCATCAAAAAC-TTCTAAAGCCTTTCTTGATGATGT
1 TTCATCAAAAACTTTC-AAAGCCTCTCTTAAGGATAT
* * * *
508454 TTCAT----AACTTCCAAAGCCTCTCTTGATGATGT
1 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
* ** * *
508486 TTTATCAAAAACTTGGAAAACC-CGTCTTAAGAATAT
1 TTCATCAAAAACTTTCAAAGCCTC-TCTTAAGGATAT
*
508522 TTCA-CTAAAAACTTTTAGAA-CCTCTCTTAAGGATAT
1 TTCATC-AAAAACTTTCA-AAGCCTCTCTTAAGGATAT
* * * * *
508558 TTTAGC-AAAACTTCCAAAG-TTCTCTTAAGGACAT
1 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
* * * * *
508592 TTCATTAAAAACTTTTAAAGCCTTTATTAAGGTTAT
1 TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
508628 TT
1 TT
508630 TTTCCAAAAA
Statistics
Matches: 237, Mismatches: 47, Indels: 54
0.70 0.14 0.16
Matches are distributed among these distances:
26 17 0.07
27 2 0.01
28 1 0.00
32 26 0.11
33 2 0.01
34 19 0.08
35 29 0.12
36 107 0.45
37 19 0.08
38 15 0.06
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.37
Consensus pattern (36 bp):
TTCATCAAAAACTTTCAAAGCCTCTCTTAAGGATAT
Found at i:508463 original size:32 final size:33
Alignment explanation
Indices: 508397--508487 Score: 121
Period size: 32 Copynumber: 2.7 Consensus size: 33
508387 CAAAAAGTTT
*
508397 TAAAGCCTTTCTTAATGATGTTTCATCAAAAACTTC
1 TAAAGCCTTTCTTGATGATGTTTCAT---AAACTTC
508433 TAAAGCCTTTCTTGATGATGTTTCAT-AACTTC
1 TAAAGCCTTTCTTGATGATGTTTCATAAACTTC
* *
508465 CAAAGCCTCTCTTGATGATGTTT
1 TAAAGCCTTTCTTGATGATGTTT
508488 TATCAAAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
32 27 0.52
36 25 0.48
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (33 bp):
TAAAGCCTTTCTTGATGATGTTTCATAAACTTC
Found at i:508525 original size:68 final size:68
Alignment explanation
Indices: 508398--508525 Score: 150
Period size: 68 Copynumber: 1.9 Consensus size: 68
508388 AAAAAGTTTT
* * * ** * *
508398 AAAGCCTTTCTTAATGATGTTTCATCAAAAACTTCTAAAGCCTTTCTTGATGATGTTTCATAACT
1 AAAGCCTCTCTTAATGATGTTTCATCAAAAACTTCGAAAACCCGTCTTGAAGATATTTCATAACT
508463 TCC
66 TCC
* * *
508466 AAAGCCTCTCTTGATGATGTTTTATCAAAAACTTGGAAAACCCGTCTT-AAGAATATTTCA
1 AAAGCCTCTCTTAATGATGTTTCATCAAAAACTTCGAAAACCCGTCTTGAAG-ATATTTCA
508526 CTAAAAACTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
67 2 0.04
68 47 0.96
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (68 bp):
AAAGCCTCTCTTAATGATGTTTCATCAAAAACTTCGAAAACCCGTCTTGAAGATATTTCATAACT
TCC
Found at i:509364 original size:50 final size:51
Alignment explanation
Indices: 509244--509460 Score: 197
Period size: 50 Copynumber: 4.3 Consensus size: 51
509234 ACCCATGTAC
* * * * * **
509244 AGAGTTAAAGTCCATATTAGCTGGCACCTATTTAGGGAGGTAAAGCATTAT
1 AGAGTCAAAGTCCATATTAGCAGGCACCTATATAGGTAGGTCAAGCCCTAT
* * * *
509295 GGAGCCAAAGTCCACATTAGCAGACA-CTATATAGGTAGGTCAAGCCCTAT
1 AGAGTCAAAGTCCATATTAGCAGGCACCTATATAGGTAGGTCAAGCCCTAT
* * * * *
509345 AGAGTCAAAGTCCATATTAGTTA-GCACCTGTAT-GGAAAGTCAAGTCCTAT
1 AGAGTCAAAGTCCATATTAG-CAGGCACCTATATAGGTAGGTCAAGCCCTAT
* * * * * *
509395 AGAGTCAAAGTCCATATTATCTGGCACTTGTATAGATAGGTCAAGCCTTAT
1 AGAGTCAAAGTCCATATTAGCAGGCACCTATATAGGTAGGTCAAGCCCTAT
*
509446 AGAGTCCAAGTCCAT
1 AGAGTCAAAGTCCAT
509461 CTATATAGGG
Statistics
Matches: 132, Mismatches: 30, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
50 80 0.61
51 52 0.39
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (51 bp):
AGAGTCAAAGTCCATATTAGCAGGCACCTATATAGGTAGGTCAAGCCCTAT
Found at i:511486 original size:24 final size:24
Alignment explanation
Indices: 511459--511508 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
511449 TTATCATAGA
511459 CCTTAATTTTCAAACATTCGTGTG
1 CCTTAATTTTCAAACATTCGTGTG
*
511483 CCTTAATTTTCAAACATTTGTGTG
1 CCTTAATTTTCAAACATTCGTGTG
511507 CC
1 CC
511509 CAACACCTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (24 bp):
CCTTAATTTTCAAACATTCGTGTG
Found at i:511993 original size:14 final size:14
Alignment explanation
Indices: 511974--512000 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
511964 TCAAAAATTA
511974 TTTTCTCCTAGAAT
1 TTTTCTCCTAGAAT
511988 TTTTCTCCTAGAA
1 TTTTCTCCTAGAA
512001 AGTGATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTTCTCCTAGAAT
Found at i:515983 original size:25 final size:26
Alignment explanation
Indices: 515930--515984 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
515920 TAAGTTTAAA
*
515930 AATGGGGTTGGAGTATCCCCTCGAAAG
1 AATGGGGTAGGAGTAT-CCCTCGAAAG
* *
515957 AATGGGGTAGGTGTAT-CCTCGATAG
1 AATGGGGTAGGAGTATCCCTCGAAAG
515982 AAT
1 AAT
515985 TTTGATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.44
27 14 0.56
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (26 bp):
AATGGGGTAGGAGTATCCCTCGAAAG
Found at i:518173 original size:20 final size:20
Alignment explanation
Indices: 518150--518203 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
518140 CATTTCAAGC
518150 ATGTATCGACACATT-CACTT
1 ATGTATCGACACATTAC-CTT
*
518170 ATGTATCGATACATTACCTT
1 ATGTATCGACACATTACCTT
*
518190 ATTGTATTGACACA
1 A-TGTATCGACACA
518204 AATTGCTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGACACATTACCTT
Found at i:523751 original size:13 final size:13
Alignment explanation
Indices: 523733--523759 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
523723 ACAACATTCC
523733 TTGTATCGATACA
1 TTGTATCGATACA
523746 TTGTATCGATACA
1 TTGTATCGATACA
523759 T
1 T
523760 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:526306 original size:19 final size:19
Alignment explanation
Indices: 526263--526335 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
526253 CACACCTAGA
*
526263 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
526283 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
526302 TGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
526322 TGTATCGATACATG
1 TGTATCGATACATG
526336 AAACTAGCAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 17 0.35
20 30 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:535307 original size:944 final size:942
Alignment explanation
Indices: 532287--536764 Score: 5267
Period size: 944 Copynumber: 4.8 Consensus size: 942
532277 TTCTTTTGAA
* * *
532287 TTTTTT-GTCCTATTTTCGTTAAAATCAAAATTCATCCCTAAAATATGACAAGTATTAATTCTCG
1 TTTTTTCGCCCTATTTTCCTTAAAATCAAAATTCATCCCTAAAATATGACAAGCATTAATTCTCG
* * * * *
532351 TAAAAGTATCCATTCTTTTTAAGATTAGGAACTAAGAACGCATTCCCTTCTTTAGGATACATGAT
66 TAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTCATTAGGATACATGAT
* * * * *
532416 ATTG-TCGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTCAACGTTTCTGATAGAATCGAGGTTTG
131 ATTGAT-GCTTCGGTGTCACAAGAAAAGCTTTTCTTTTCACCTTTTCTGATAGAATCCAAGTTTG
* *
532480 TCTCTTAAAAAAGATAAACATGAGTTGTCATACTAATAAGCATTCTTTTGAAGATTAGGCACCAT
195 TCTCTTAAAAAAGATAAACATGAGTTGTCATACTAATAAGCAATCTTTTCAAGATTAGGCACCAT
* ** * *
532545 AAACACAGTCTTCTCATAAGGATACATGATATT-ATTGCTTTGGTTTTGCAAG-AAGGCATTCTT
260 AAACATAGTCTTCTCATAAGGATACATGATATTGA-CACTTTGGTTTCGCAAGAAAGGCTTTCTT
* * *
532608 TTTTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGCAATGA
324 CTCTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGCAATGA
*
532673 TCTTTATTCATTTTGTGATTAGGCACTATAACTCTCCTCATTAGGATAAATGATATTGATGATTT
389 TCTTTATTCATTTTGTGATTAGGCACTATAATTCTCCTCATTAGGATAAATGATATTGATGATTT
*
532738 TCTTTTGCCCGAAAATCTTTTCTTTGCCCTATTTTCCTTATAATCAAAATTCATCCCTTAAATAC
454 TCTTTTGCCCGAAAATCTTTTCTTT-CCCTATTTTCCTTATAATCAAAATTCATCCCTTAAATAT
* * * *
532803 GACAAGAATCGATTCTTGTAATAGCATCCATTCTTTCCAAGATTAGGAACCAGGAAAAAATTCCT
518 GACAAGAATCGATTCTCGTAACAGC-TCCATTCTTTTCAAGATTAGGAACCAAGAAAAAATTCCT
* * *
532868 TTCATTAAGATGCATGACAATGATGCTTTGGTCTCGTAAGAAAATCTTTTCTTTCCGCCATTCTT
582 TTCATTAAGATGCATGACATTGATGCTTTGGTCTCGTAAGAAAAACTTTTCTTTCCACCATTCTT
* *
532933 GATATAATCAAAGTTTTACTCTTAAATAAGACAGACATGAATAGTCATACTAATCCCTATTCTTT
647 GATAAAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTT
* * * * *
532998 TTAGGATTAGGCACCA-AAACACAGTCTTCTCATAAGGATACACGATATTAACGCTTTGGTTTTG
712 TCAGGATTAGGCACCATAAACACAGTCTTCACATAAGCATACACGATATTAACACTTTGGTTTCG
* * * * *
533062 TAAGAAAGGCTTTTTTCCCACCAATTATTGGAAAGTTTAGGTTCTTGCCTCAAATGAGACAGACA
777 CAAGAAAGGCTTTCTTCCCACCAATTATTGGAAAGTCTAAGTTCATGCCTCAAATGAGACAGACA
* * *
533127 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCGCAATAAACACATTCTCCTCATTAA
842 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAG
*
533192 GATAAATATATTGATGATTTTCTTTTGCATGGAAATC
907 GATAAATATATTGATGATTTTCTTTTGCAT-GCAATC
* * *
533229 TTTTGTTTGCCCTATTTTCCTTAAAATCAAAATTC-TACCCTTAAATATGACAAGCATCAATTCT
1 TTTT-TTCGCCCTATTTTCCTTAAAATCAAAATTCAT-CCCTAAAATATGACAAGCATTAATTCT
** * * ** * *
533293 CG-AACTAGTCTCCATTCTTCACAAGATTTGGAACCAAGATTAGATTCCCTTCATTAGGATACGT
64 CGTAAC-AGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTCATTAGGATACAT
* * * * * * * *
533357 AACATTGATGCTTCGGAGCCGCAAGAAAAGCTTTTCCTTCCACCGTTTTTTG-TAGAATCCAAGT
128 GATATTGATGCTTCGGTGTCACAAGAAAAGCTTTTCTTTTCACC-TTTTCTGATAGAATCCAAGT
* * * * * ** * * *
533421 TT-TGCTCTTAAATAAGACAGACATGAATAGTCA-AGCTAAT-CCCTATTCTTTTCAACACTAGG
192 TTGT-CTCTTAAAAAAGATAAACATGAGTTGTCATA-CTAATAAGC-AATCTTTTCAAGATTAGG
* * * *
533483 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCACACGAAATGCT
254 CACCATAAACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCT
* * * * * *
533548 TTCTTCTCT-C---TATTGGAATGTCTAAGTCCGTGCCTCAAATGACACACACATGGATTCC-AA
319 TTCTTCTCTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA-TCCTAG
* * * * *
533608 CAATGACCTTTACTCATTTTGTGATTAGGCACTATAAACACATTGTCGTCACTAGGATAAATGAT
383 CAATGATCTTTATTCATTTTGTGATTAGGCACTAT----A-ATTCTCCTCATTAGGATAAATGAT
** * * *
533673 ATTGATGATTTT-TTTT--AAGGAAATCATTTCTTTCCCATATTATCCTTA-AATTCAAAATTCA
443 ATTGATGATTTTCTTTTGCCCGAAAATCTTTTCTTTCCC-TATTTTCCTTATAA-TCAAAATTCA
** * * * *
533734 TCATTTATATATAACAAGCATCGATACTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAA
506 TCCCTTAAATATGACAAGAATCGATTCTCGTAACAG-CTCCATTCTTTTCAAGATTAGGAACCAA
* * * * * * * * * *
533799 GAATACATTCCCTTT-ATTATGATACATGACATTGATGCTTCGGTGTCATAGGAATATCTTTTCT
570 GAAAAAATT-CCTTTCATTAAGATGCATGACATTGATGCTTTGGTCTCGTAAGAAAAACTTTTCT
* * * * *
533863 TTCCACCGTTTTTGATAAAATCAAACTTTTACTCTTGAATAAGGCAAACATGAATAG---TACTA
634 TTCCACCATTCTTGATAAAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTA
* * * * * * *
533925 GTACCTATTCTTTTCAGGATTAGACACAATAAACATAGTGTTCACATAAGCATACACGATATTGG
699 ATCCCTATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCACATAAGCATACACGATATT-A
* * * *
533990 A-ACTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCATGTCTC
763 ACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTATTGGAAAGTCTAAGTTCATGCCTC
** * *
534054 AAATGAGACAGACATGGATTCTAGTTTTGATCTTCGTTCATTTTGTGATTAGGCACTATAAACAC
828 AAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACAC
* * * *
534119 TTTCTCCTCATTAGGTTAAA-AGCTATTGAGGTTTTTC-TTT---TGC-A--
893 ATTCTCCTCATTAGGATAAATA--TATTGATGATTTTCTTTTGCATGCAATC
* *
534163 -TTTTTGGCCCTATTTTCCTTAAAATCAAAATTCATCCCGAAAATATGACAAGCATTAATTCTCG
1 TTTTTTCGCCCTATTTTCCTTAAAATCAAAATTCATCCCTAAAATATGACAAGCATTAATTCTCG
* * * **
534227 TAACAGTCTCTATTCTTTTCAAGATTAAGAACTAAGAACATATTTTCTTCATTAGGATACATGAT
66 TAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTCATTAGGATACATGAT
* * * * * * *
534292 ATT-CTCGCTTTGGTGTCACAAGAAAATCTTTTTTTTTCACCGTTTCTGATAGAATCGAGGTTTG
131 ATTGAT-GCTTCGGTGTCACAAGAAAAGCTTTTCTTTTCACCTTTTCTGATAGAATCCAAGTTTG
* * *
534356 TCTCTTAAAAAAGATAAACATGAGTTGTCATACTAATAAGCAATGTTTTTAGGATTAGGCACCAT
195 TCTCTTAAAAAAGATAAACATGAGTTGTCATACTAATAAGCAATCTTTTCAAGATTAGGCACCAT
* * *
534421 AAACACAGTCTTCTCATAAGGATACATGATATTAACACTTTGGTTTTGCAAGAAAGGCTTTCTTC
260 AAACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTC
* * *
534486 TCTCCAAGTTTTGGAAAGTCTAAGTCCGTGCCTCAAGTGAGACAAACATAGATCCTAGCAATGAT
325 TCTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGCAATGAT
534551 CTTTATTCATTTTGTGATTAGGCACTATAATTCTCCTCATTAGGATAAATGATATTGATGATTTT
390 CTTTATTCATTTTGTGATTAGGCACTATAATTCTCCTCATTAGGATAAATGATATTGATGATTTT
*
534616 CTTTTGCCCGAAAATCTTTTCTTTACCCTATTTTCCTTATAATCAAAATTCATCCCTTAAATACG
455 CTTTTGCCCGAAAATCTTTTCTTT-CCCTATTTTCCTTATAATCAAAATTCATCCCTTAAATATG
* * ** * * *
534681 ATAAGAATCGATTCTCGTAATAGCATCCATTCTTTTTGAGATTAAGAACTAGGAAAAAATTCCTT
519 ACAAGAATCGATTCTCGTAACAGC-TCCATTCTTTTCAAGATTAGGAACCAAGAAAAAATTCCTT
534746 TCATTAAGATGCATGACATTGATGCTTTGG-CTCGTAAGAAAAACTTTTCTTTCCACCATTCTTG
583 TCATTAAGATGCATGACATTGATGCTTTGGTCTCGTAAGAAAAACTTTTCTTTCCACCATTCTTG
* * *
534810 ATAGAATCAAAGTTTTACTCTTAAATAAGATAAACATGAATAGTCATACTAATCCCAATTCTTTT
648 ATAAAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTT
* * * ***
534875 CAGGATTAGGCACCA-AAACACAGTCTTCTCATAAGGATACATGATATTAACACTTTGGTTTTAT
713 CAGGATTAGGCACCATAAACACAGTCTTCACATAAGCATACACGATATTAACACTTTGGTTTCGC
* * * * *
534939 AAGAAAGGCTTTCTTCCTACTAATTAATGGAAAGTCTAAGTTCCTACCTCAAATGAGACAGACAT
778 AAGAAAGGCTTTCTTCCCACCAATTATTGGAAAGTCTAAGTTCATGCCTCAAATGAGACAGACAT
* *
535004 GGAATCTAGTAATGATCTTCATTCATTTTGTGATTATGCACAATAAACACATTCTCCTCATTTA-
843 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCA-TTAG
*
535068 GATAAATATATTGATGATTTTCTTTTGCGTGCAAATC
907 GATAAATATATTGATGATTTTCTTTTGCATGC-AATC
* * *
535105 TTTTATTCGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAGATATGACAAGCATCAATTCTC
1 TTTT-TTCGCCCTATTTTCCTTAAAATCAAAATTCATCCCTAAAATATGACAAGCATTAATTCTC
* * * * * ** * * *
535170 GTAATAGTCTCAATTCTTCTCAAGATTTGGAACCAAGATTACATTCCCTTCACTAGGATACGTAA
65 GTAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTCATTAGGATACATGA
* * *
535235 CATTGATGCTTCGGTGTCACAAGAAAAGCTTTTCTTTTCTCCATTTTTTG-TAGAATCCAAGTTT
130 TATTGATGCTTCGGTGTCACAAGAAAAGCTTTTCTTTTCACC-TTTTCTGATAGAATCCAAGTTT
* * *** *** * *
535299 -TACTCTTAAATAAGACAAACATGAACAGTCA-AGCTAATCCCCAATCTTTTCAATACTAGGCAC
194 GT-CTCTTAAAAAAGATAAACATGAGTTGTCATA-CTAATAAGCAATCTTTTCAAGATTAGGCAC
** * *
535362 CATAAACATAGTCTTCTCATAAGGATACATGATATTGACGTTTTGGTTTCGCAAGAAAGGCATTG
257 CATAAACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTC
* *
535427 TTCTCTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCC-AGTAA
322 TTCTCTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA-TCCTAGCAA
** * * * *
535491 TGATCCTTGCTT-TTTTTGCGATTAGGCACTATAAACACATTGTCGTCATTAGGATAAATGATAT
386 TGAT-CTTTATTCATTTTGTGATTAGGCACTAT----A-ATTCTCCTCATTAGGATAAATGATAT
* * * *
535555 TGATGATTTT-TTTAAG---G-AAATCTTTTCTCTCCCATACTATCCTTA-AATTCAAAATTCAT
445 TGATGATTTTCTTT-TGCCCGAAAATCTTTTCTTTCCC-TATTTTCCTTATAA-TCAAAATTCAT
* * * *
535614 CCCTTAAATATAACAAGCATCGATACTCGTAACAGTCTACATTCTTTTCAAGATTAGGAACCAAG
507 CCCTTAAATATGACAAGAATCGATTCTCGTAACAG-CTCCATTCTTTTCAAGATTAGGAACCAAG
* * * * * * ** * * * * * * * *
535679 AATACATT-CTTTCATTAGGTTACGTGGTATTAATGCTTCGATGTCGTAGGAAAAGCATTTGTTT
571 AAAAAATTCCTTTCATTAAGATGCATGACATTGATGCTTTGGTCTCGTAAGAAAAACTTTTCTTT
* * * **
535743 CCACCATTTTTGATAAAATCAAACTTTTACTCTTGAATAAGACAAACAAAAATAG---TACTAAT
636 CCACCATTCTTGATAAAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * *
535805 ACGTATTCTTTTCAAGATTAGGCACCATAAACATAGTGTTCACATAAGCATACACGATATTGACA
701 CCCTATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCACATAAGCATACACGATATTAACA
* * * * * * *
535870 TTTTGGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGGAAAGTCTATGTTCGTGTCTTAAA
766 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTATTGGAAAGTCTAAGTTCATGCCTCAAA
* * * * ** *
535935 TGTGAAAGACATGGATTCTAGTATTGATCTTCTTTCATTTTGTGATTAGGCACTGTAAACACTTT
831 TGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATT
* *
536000 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTATTCAATC
896 CTCCTCATTAGGATAAAT-ATATTGATGATTTTCTTTTGCATGCAATC
* * * *
536048 TTTTTTCGCCCTATTTTACTTAAAATCAAAATTTATGCCTAAAATATGACAAGGATTAATTCTC-
1 TTTTTTCGCCCTATTTTCCTTAAAATCAAAATTCATCCCTAAAATATGACAAGCATTAATTCTCG
* * * *
536112 TGAACAGTCTCTATTCTTTTCAACATTAGGATA-TAAGAACACATTCCCTTCTTTAGAATACATG
66 T-AACAGTCTCCATTCTTTTCAAGATTAGGA-ACTAAGAACACATTCCCTTCATTAGGATACATG
*
536176 ATATTGATGCATT-GGTGTCACAAGAAATGCTTTTCTTTTCA-CTGTTTCTGATAGAAT-CAAGG
129 ATATTGATGC-TTCGGTGTCACAAGAAAAGCTTTTCTTTTCACCT-TTTCTGATAGAATCCAA-G
* * * * *
536238 TTTGTCTCTTAAAAAAGATAAACATGAGTTGTCATACTAGTCAGCATTCTTATCAGGATTAGGCA
191 TTTGTCTCTTAAAAAAGATAAACATGAGTTGTCATACTAATAAGCAATCTTTTCAAGATTAGGCA
* *
536303 CCATAAACATAGTCCTCTCATAAGGATACATGATATTGACACTTTGGTTTCGTAAGAAAGGCTTT
256 CCATAAACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
* *
536368 CTTCTCTCCAAGTTTTGGAAAGTCTAAGTTTGTGCCTCGAAA-GAGACAAACATGGATTCTAGCA
321 CTTCTCTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAACATGGATCCTAGCA
* *
536432 ATGATCTTTATTCATTTTATGATTAGGCACTATAATTCTCCTAATTAGGATAAATGATATTGATG
385 ATGATCTTTATTCATTTTGTGATTAGGCACTATAATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
536497 ATTTTCTTTTGCCCGAAAATCTTTTATTTGTCTTATTTTCCTTATAATCAAAACTCATCCCTTAA
450 ATTTTCTTTTGCCCGAAAATCTTTTCTTT-CCCTATTTTCCTTATAATCAAAATTCATCCCTTAA
* *
536562 ATATGATAAGAATCGATTCTCGTAACAGCGTCCATTCTTTTCAAGATTAGGAACCACGAAAAAAT
514 ATATGACAAGAATCGATTCTCGTAACAGC-TCCATTCTTTTCAAGATTAGGAACCAAGAAAAAAT
* * * * * *
536627 TCCTTTTATTAAGATGCATGACATTGATGCTTTGGTCTCGTATGAAAAACTTTACTTACGACCGT
578 TCCTTTCATTAAGATGCATGACATTGATGCTTTGGTCTCGTAAGAAAAACTTTTCTTTCCACCAT
* * *
536692 TCTTGATAGAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTACTCCCCCAT
643 TCTTGATAAAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCCTAT
536757 TCTTTTCA
707 TCTTTTCA
536765 AAATTTTACT
Statistics
Matches: 2936, Mismatches: 497, Indels: 202
0.81 0.14 0.06
Matches are distributed among these distances:
931 39 0.01
932 257 0.09
933 82 0.03
934 127 0.04
935 163 0.06
936 106 0.04
937 35 0.01
938 8 0.00
940 34 0.01
941 343 0.12
942 470 0.16
943 365 0.12
944 626 0.21
945 197 0.07
946 45 0.02
948 4 0.00
949 35 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (942 bp):
TTTTTTCGCCCTATTTTCCTTAAAATCAAAATTCATCCCTAAAATATGACAAGCATTAATTCTCG
TAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTCATTAGGATACATGAT
ATTGATGCTTCGGTGTCACAAGAAAAGCTTTTCTTTTCACCTTTTCTGATAGAATCCAAGTTTGT
CTCTTAAAAAAGATAAACATGAGTTGTCATACTAATAAGCAATCTTTTCAAGATTAGGCACCATA
AACATAGTCTTCTCATAAGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCT
CTCCAAGTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGCAATGATC
TTTATTCATTTTGTGATTAGGCACTATAATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
TTTTGCCCGAAAATCTTTTCTTTCCCTATTTTCCTTATAATCAAAATTCATCCCTTAAATATGAC
AAGAATCGATTCTCGTAACAGCTCCATTCTTTTCAAGATTAGGAACCAAGAAAAAATTCCTTTCA
TTAAGATGCATGACATTGATGCTTTGGTCTCGTAAGAAAAACTTTTCTTTCCACCATTCTTGATA
AAATCAAAGTTTTACTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAG
GATTAGGCACCATAAACACAGTCTTCACATAAGCATACACGATATTAACACTTTGGTTTCGCAAG
AAAGGCTTTCTTCCCACCAATTATTGGAAAGTCTAAGTTCATGCCTCAAATGAGACAGACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATA
AATATATTGATGATTTTCTTTTGCATGCAATC
Found at i:538663 original size:475 final size:475
Alignment explanation
Indices: 536767--542255 Score: 5470
Period size: 475 Copynumber: 11.6 Consensus size: 475
536757 TCTTTTCAAA
* * * * * *
536767 ATTTTACTTAAAATCAAAATTTATGCCTAAAATATGACAAGGATTAATTCTC-TAAACAGTCTCC
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGT-AACAGTCTCC
* * * * *
536831 ATTCTTTTCAAGATTAGGATCTAAGAACACATTCCCTTCGTTATGG-TACATGATATTGATGCAT
65 ATTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTA-GGATACATGACATTGATGC-T
* * * * ** * *
536895 T-GGTGTCACAAGAAATGCTTTTCTTTTCACTGTTCCTGATAGAATCAAGGTTTGTCTCTTAAAA
128 TCGGTGTCAGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAAT
* * * ** *
536959 AAGATAAACATGAGTTGTCATACTAATCAGCATTCTTTTCAGGATTAAGCACCA-AAACACAGTC
192 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTC
* * * *
537023 TTCTCATAAGGATACACGATATTAACGCTTTGGTTTTGTATGAAAGGCTTTCTTCTCACCAA-TT
257 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT
* * * * * *
537087 ATTGGAAAGTCTAAGTTCCTGCCTCAAATGAGACAGAGATGGATTCTAGTAATGATCTTCATTGA
322 -TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCA
* * * * * * * *
537152 TTTTGCGATTATGCACAATAAACAAATTCTCCTTATTAAGATAAAT-ATATTTATGAGTTTCTTT
386 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * *
537216 TGCATGGAACTTTTTTATTTGCCCT
451 TGCATGAAAATCTTTTCTTTGCCCT
537241 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGT-T-C-
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * * * *
537303 TTC---TCAAGATTTGGAACCAAGATTATAATGCCTTCATTAGGATACGTAACATTGATGCTTCG
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * * * * *
537365 GTGTTACAAGAAAAGCTTTTCTTTCCTCTGTTTTTTG-TAGAATCCAAGTTTTACTTTTAAATAA
131 GTGTCAGAAGAAAAGCTTTTCTTTCCACCG-TTTTTGATAGAATCAAAGTTTT-CTCTTAAATAA
** * * * *
537429 GACAAACATGAATAGTCA-AGCTAATCCCCATTCTTTTCAATACTAGGCAGCATACACACAGTTT
194 GACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCT
* * * * * *
537493 TCTTATACGGATACACGATATTGACGCTTTGGTTTCGCAACAAAGCCTTTTTTCTCTCCAAGTTT
258 TCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTTT
* *
537558 TGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCCAGCAATTATGC-TTACTT-A
323 TGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGAT-CTTTA-TTCA
* * *
537621 TTTTGTGATTAGGCACTATAAACACATTATCGTCATTCGGATAAATGATATTGATGATTTT-TTT
386 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* *
537685 T--AAGGAAATCTTTTCTTT-CCCAT
451 TGCATGAAAATCTTTTCTTTGCCC-T
* * * * * * * *
537708 ATTATCCTTAAATTCAAAATTCATCCCTAAAATATAACAAGCAGCGATACTTGTAACAGTCTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * *
537773 ATCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAGGATACATGACATTAATGCTTCG
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * * * *
537838 GTGTCATAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAACTTTTAGTCTTAAATAAG
131 GTGTCAGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTT-CTCTTAAATAAG
* * * *
537903 ACAAACATGAATAG---TACTAATACCTATTCTTTTCAGGATTA-GCACCATAAACATAGTGTTC
195 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTC
* * * * *
537964 AT-ATAAGCATACACGATATTGGCACTTTGGTTTCGCAAGAAAGGCATTCTTGC-CACCAATTTT
260 -TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CTCACCAAGTTT
** * * * * * * *
538027 TGGAAAGT-TGAAGTTCAAGTCTCAAATGAGACAAAGATGGATTCTTGTATTGATATTCT-TTCA
323 TGGAAAGTCT-AAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTT-TATTCA
* * *
538090 TTTTGTGATTAGGCACTATAAACACTTTCTCCTTATTAGGATAAATGCTATTGATGATTTTCTTT
386 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
*
538155 TGCATTG-AAATCTTTT-TTTCGCCTT
451 TGCA-TGAAAATCTTTTCTTT-GCCCT
* * * * * * *
538180 ATTTTCCTTAAAATCAAAATTCATCCCTAAAATATGATAAGTATTAATTCTTGTAACAGACTCTA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * *
538245 TTCTTTTCAAGATTAGGAACTAAGAAGACATTCCCTTGC-TTATGATATATGACATTGATGCTTT
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTT-CATTAGGATACATGACATTGATGCTTC
* * *
538309 GGTGTCAGAAGAAAAGCTTTTCATTT-CACCATTTTTGATAGAATCAAGGTTTGTCTCTTAAAAA
130 GGTGTCAGAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAATA
* *
538373 ACACAAACATGAGTAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCT
193 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCT
*
538438 TCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCTCC-AGTTT
258 TCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTTT
* * *
538502 TGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCATTCATCTTTATACATT
323 TGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCATT
* * * * * *
538567 TTTTGATTCGGCACTATAAACACATTCTCCTTATTAGTATAATTGATATTGAAGATTTTCTTTTG
388 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
**
538632 CCCGAAAATCTTTTCTTTGCCCT
453 CATGAAAATCTTTTCTTTGCCCT
* * * * * *
538655 ATTTTCCTTATAATCAAAATTCATCCCTTAAATATAACAAGAATCGATTATCGTAATAG-CATCC
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTC-TCC
* * * * * *
538719 ATTCTTTTAAAGATTAGGAACCAGGAA-AAATTCCTTTCATTAAGATACATGACATTGATGCTTT
65 ATTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTC
* * * *
538783 GGTCTC-GAAAGAAAAACTTTTCTTTCCACCGTTCTTGATAGATTCAAAGTTTTACTCTTAAATA
130 GGTGTCAG-AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTT-CTCTTAAATA
* *
538847 AAACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA-AAACACCA-TC
193 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA-CAGTC
* * * * *
538910 TTCTCATAAGTATACACGATATTAACGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCCACCAA-TT
257 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT
* * * * * *
538974 GTTGGAAAGTTTAGGTTCCTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
322 -TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCA
* * * * * * *
539039 TTTTGTGATTACGCACTATAAATACATTCTTCTCATTAAGATATATAATATCGATGATTTTCTTT
386 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
*
539104 TGCATGAAAATCTTTTATTTGCCCT
451 TGCATGAAAATCTTTTCTTTGCCCT
539129 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * * * *
539194 TTCTTCTCAAGATTTGGAACCAAGATTACATTCCCTTCATTTGGATACGTAACATTGATGCTTCA
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * * *
539259 GTGT-TGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTTG-TAGAATCCAAGTTTTACTTTTAAATA
131 GTGTCAG-AAGAAAAGCTTTTCTTTCCACCG-TTTTTGATAGAATCAAAGTTTT-CTCTTAAATA
* * * * * * *
539322 AGACAAACACGAATAGTCA-AGCTAATGCCCATTTTTTTTAGTACTAAGCACCATAAACACAGTC
193 AGACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTC
* * * * *
539386 TTCTCATCAGGATACATGATATTAACGCTTTGGTTTCACAAGAAAGGCTTTCTTCTCTCCAAGTT
257 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT
*
539451 TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCCTTATTCAT
322 TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCAT
* * * * *
539516 TTTGTGATTCA-GCACAATAATCACATTGTCGTCATTAGGATAAATGATATTGATCA-TTT-TTT
387 TTTGTGATT-AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * *
539578 T-CAAGTAAATCATTGCTTT-CCCAT
451 TGCATGAAAATCTTTTCTTTGCCC-T
* * * * * * * *
539602 ATTATCCTTAAAATCAAAATTGATCTCTTAAAAATAACAAGCATCGATACTCATAACAGTCTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * ** * * *
539667 CTCGTTTCAAGATTGGGAACCAAGAATACATTATCTTCACTATGATACTTGACATTGATGCTTCG
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * * * * * * *
539732 GTGTC-GCAGGAAATGTTTTTCTTTCCA-CTTTTTTGGA-AAAAGTCAAACTTTGACTCTTGAAT
131 GTGTCAG-AAGAAAAGCTTTTCTTTCCACCGTTTTT-GATAGAA-TCAAAGTTT-TCTCTTAAAT
* * ** * * *
539794 AAGACAAACATGAATAG---TACTAATACCTATTCTTTTCAACACTAGGCACCATAAACATAGTG
192 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTC
* * * * * * *
539856 TTCACATAAGCATACACAATATTGACACTTCGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTT
257 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT
* * *
539921 TTGG-AAGTCTAAGTTCGTGTCTCAAATGAGACAGACATGGATTCTAGCATTGATCTTCT-TTCA
322 TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTT-TATTCA
* * *
539984 TATTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTT
386 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * *
540049 TGCATTAAAATCTTTTTTTTTACCCT
451 TGCATGAAAATC-TTTTCTTTGCCCT
* * * * * * *
540075 ATTTTCCTTAAAATCAAAATTCATCTCTAAAATATGGCAAGCATTAATTCTCGTCACAATGTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * * *
540140 TTCTTTTCAAGATTAGGAACTAAGAACACATTCCCTTTATAAGGATACATGATATTGATGCTTTG
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * *
540205 GTGTCACAAGAAAAGCTTTTCATTT-TACTGTTTTTGATAGAATC-AAGATTTGTCTCTTAAA-A
131 GTGTCAGAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAG-TTT-TCTCTTAAATA
* ** * * *
540267 GAGACAAATATGAGCAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCACCATAAACACAGTC
193 -AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTC
* * * *
540332 TTCTCACAAGGATACACGATATTGACGCTTCGGTTTCGCAAAAAAGGCTTTCTTCTCTCCAAGTT
257 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT
* ** ** *
540397 TTGGAAAGTCTATGTTCGTGCAGCAAATGAGACACACATGGATTCTAGTTATGATCTTTATTTAT
322 TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCAT
*
540462 TTTGTGATTAGGCACTATAAACACAATCAT-CTCATTAGGAT--A--A-ATT-AT-A-------T
387 TTTGTGATTAGGCACTATAAACACATTC-TCCTCATTAGGATAAATGATATTGATGATTTTCTTT
540512 TG-ATG---AT-TTTT-TTTGCCCT
451 TGCATGAAAATCTTTTCTTTGCCCT
* * * * * *
540531 ATTTTCCTTATAATCAAAAATTCATCCCTTAAATATGACAGGAATCGATTATCGTAACAGTGTCC
1 ATTTTCCTTAAAATC-AAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCC
* * * * * * * * * *
540596 ATTCTTTTCTATATTAAGAACCAGGAAAAAATTCCTTTCATTAAGATGCATGACATTGATGCTTT
65 ATTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTC
* * * * * *
540661 GGTCTC-GTAAGAAAAACTTTTCTTTCCACTGTTCTTGATAGAATCAAAGTTTTACTCTCAAAAA
130 GGTGTCAG-AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTT-CTCTTAAATA
*
540725 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA-AAACACAGTCT
193 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCT
* * * * * * *
540789 TCTTATAACGATACACGATATTAACGCTTTGTTTTTGTAAGAAAGGCTTTCTTCCCACCAA-TTA
258 TCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT-
* * * * * *
540853 TTGGAAAGTCTAAGTTCTTGCCTTAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTCAT
322 TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCAT
* * * * * * * * *
540918 TTTGTGATTACGCACAATAAATACTTTCTACTCAATAAGATAAATAATAATGATGATTTTCTTTT
387 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * *
540983 AG-ATGGAAATCTTTTATTTGCCTT
452 -GCATGAAAATCTTTTCTTTGCCCT
* * *
541007 ATTTTCCTTAAAATCAAAATTCAACCCTCAAATATGACAAGCATCAATTCCCGTAACAGTCTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * * * * * *
541072 TTCTTCTCATGATTTGGAAACAAGATTACATTCCCTTTACTAGGATACGTAACATTGATGCTTCG
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * * * * *
541137 GAGTCATAAGAAAAGCTTTTCTTTCCTCCATTTTTTG-TAGAATCCAAGCTTTACTCTTAAATAA
131 GTGTCAGAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAG-TTTTCTCTTAAATAA
** *
541201 GACAAACATGAATAGTCA-AGCTAATCCCCATTCTTTTCAATACTAGGCACCATAAACACAGTCT
194 GACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCT
* * *
541265 TCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCTCCAAGGTT
258 TCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTTT
* * * *
541330 TGGAAAGCCTAAGTTCATGCCTCAAATGAGACACACATGGATTCTAGCAATGATCCTTATTCGTT
323 TGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCATT
* * * * *
541395 TTGTGATTAGTCACTATAAAGACATTGTCATCATTAGGATAAAAGATATTGATGATTTT-TTTTG
388 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * *
541459 TAAGGAAATCTTTTCTTT-CCCTT
453 CATGAAAATCTTTTCTTTGCCC-T
* * * * * * * *
541482 ATTATCCTTAAGATCAAAATTCATCCATTAAATATAACAAGCATCGATGCTCATAATAGTCTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * *
541547 TTCTTTTCAAGATTGGGAACTAAGAATACATTCCCTTCATTAGGATACATGACATCGATGCTTCG
66 TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
* * * * * * *** *
541612 CTGT-TGTAGGAAAAGCTTTTCATTT-CACTGTTTTTGATAAAATCAAACATTGAGTCTTGAATA
131 GTGTCAG-AAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAA-GTTTTCTCTTAAATA
* * * **** * *
541675 AGACAAATATAAATAG---TACCAATATATATTCTTTTCAGGATTAGGTACCATAAACATAG-CG
193 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTC-
* ** * * * * * * *
541736 TTCACATAATTATACGCGATATTGACACTTCGGTTTCACAAGATAGGCTTTCTTCCCACCAATTT
257 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTT
* * ** * ** * * * * *
541801 TTGTAATGTCTAAGTTAATGGCTCAGTTGAGACAAACTTGGATTC-ATGTAAAGATCTTCATTCA
322 TTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTA-GCAATGATCTTTATTCA
* * * * * * * * * *
541865 ATTTGTTACTAAGTAATAGAAATAAATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
386 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
541930 TGCATGAAAATCTTTTCTTTGCCCT
451 TGCATGAAAATCTTTTCTTTGCCCT
* * * * * ** * *
541955 ATTTTTCTTAAAATC-AAATGCGTCCCTTAAATATGACAAACATCGATTCTTATGATAGTCTCCA
1 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
* * * * *
542019 TTCTTTTCAAGATTGGGATA-CAAAAACACATTCCCTTCATTAGGATAGATGGCATTGATGCTAT
66 TTCTTTTCAAGATTAGGA-ACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCT-T
* * * * * *
542083 -GGTGTC-GAA-AGAAGGTTCTCTTTCCACCGTTTTTGACAAAATCAAAGTTTGGCTCTTAAATA
129 CGGTGTCAGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAATA
* * * * * **
542145 AGACAAACATGAACACTCATACTAATCCCTATTCTTTTCGGGATTAGGCACCATAAATATGGTCT
193 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCT
* * * *
542210 TCTTATAAGGATACGCGATGTTGACACTTTGGTTTCGCAAGAAAGG
258 TCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGG
542256 TGAAAGCTTA
Statistics
Matches: 4125, Mismatches: 748, Indels: 285
0.80 0.15 0.06
Matches are distributed among these distances:
455 3 0.00
456 173 0.04
457 188 0.05
458 5 0.00
459 2 0.00
460 1 0.00
461 2 0.00
462 4 0.00
463 4 0.00
466 3 0.00
467 72 0.02
468 133 0.03
469 427 0.10
470 192 0.05
471 25 0.01
472 489 0.12
473 629 0.15
474 430 0.10
475 718 0.17
476 535 0.13
477 89 0.02
478 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
TTCTTTTCAAGATTAGGAACCAAGAATACATTCCCTTCATTAGGATACATGACATTGATGCTTCG
GTGTCAGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTCTCTTAAATAAGA
CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCT
CATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAAGTTTTGG
AAAGTCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGCAATGATCTTTATTCATTTTG
TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
GAAAATCTTTTCTTTGCCCT
Found at i:543028 original size:13 final size:13
Alignment explanation
Indices: 543010--543035 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
543000 CAATTTTTTG
543010 TGTATCGATACAT
1 TGTATCGATACAT
543023 TGTATCGATACAT
1 TGTATCGATACAT
543036 ACTTTCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:543051 original size:32 final size:33
Alignment explanation
Indices: 542990--543053 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
542980 TACAAGCTAA
** *
542990 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTCTGTATCGATACAT
543023 TGTATCGATAC-ATACTTTCTGTATCGATACA
1 TGTATCGATACAATACTTTCTGTATCGATACA
543054 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTCTGTATCGATACAT
Found at i:545599 original size:13 final size:13
Alignment explanation
Indices: 545581--545606 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
545571 ATAATCACCC
545581 TGTATCGATACAA
1 TGTATCGATACAA
545594 TGTATCGATACAA
1 TGTATCGATACAA
545607 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:547705 original size:15 final size:15
Alignment explanation
Indices: 547685--547715 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
547675 ATTTCGTTTG
*
547685 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
547700 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
547715 G
1 G
547716 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:549548 original size:21 final size:21
Alignment explanation
Indices: 549519--549563 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
549509 AAGTTTTCAT
*
549519 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
549539 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
549561 TTT
1 TTT
549564 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:553174 original size:473 final size:475
Alignment explanation
Indices: 552180--554772 Score: 2830
Period size: 473 Copynumber: 5.4 Consensus size: 475
552170 AGGCTTTCTG
* * * *
552180 CCCACTAATTTTTGTAAAGACTAAGCTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
1 CCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* *
552245 TCTTCATTC-TTATTGTGATTAGGCACTATAAAACACATTCTCCTTATTATGATAAATGATATTG
66 TCTTCATTCATT-TTGTGATTAGGCACTAT-AAACACATTCTCCTCATTAGGATAAATGATATTG
* * * * *
552309 ATGGTTTTCTTTTCCATGAAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
129 ATGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * * * * * **
552374 TATATATGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAAGAAAAAAAA
194 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAAAA
* * * *
552439 TGCATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTTTTTCT
258 ---ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
* * * *
552504 ACTATTTTTGATAGAATCAATGTTTGTCTCTTCAAATAAGACAAACATAAATAGTCATACTAAT-
320 ACCATTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATACTCATACTAATC
* * * * *
552568 CCCTATTGTTTTCAGGATTTGGCACCATAAACATTA-TCTTCTCATAAGGATACACGATATTAAT
384 CCCT-TTCTTTTCAGGATTAGGCACCAAAAACA-TAGTCTTCTCTTTAGGATACACGATATTAAT
* * *
552632 GCTTTGG-TTTCACAAG-ATAGGCTTTTTT
447 GCTTTGGTTTTCA-AAGAAAATGCATTTTT
* * * * *
552660 CCCACCAATTTTTGTAAAGTCTATGTTCATGGCTCAATTGAGACAAACATGGATTCTTGTAAGGA
1 CCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* * ** * * * *
552725 TATTCATTCATTTTGTTATTAAACAATATATACACATTTTCCTCATTAGGATAAAAGATATTGAT
66 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
552790 GATTTTCTTTTGCATGAAAATCTTTCCTTTGCCTTATTTTCCTTAAAATAAAAATTCATCCTTTA
131 GATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA
* * *
552855 AATAAGACAAGCATCGACTCTCGTAA-AGTC-CCATTCTTTTCAAAATTAGGAACCAAAAAAAGT
196 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAAA-T
* * * ** *
552918 TCCATT-TTTAGGGTACATGACATTGATGCTTTGGTGTCGGAAGAAAAGCTTTTCTTTCCACCAC
260 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCAT
* * *
552982 TTTTGATAGAATCAACGTTTGTCTCTTAAATGAGAC-AACTATGAATACTCACACTAATCCCCTT
325 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTCATACTAATCCCCTT
* * * * * * *
553046 TCTTTTCAGGATTAGGTACCAAAAACACAGTCTTTTCTTTAGGTTACATGATATTAACGCTATGG
389 TCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTAATGCTTTGG
*
553111 TTTTCAAAGAAAATGCATTGTT
454 TTTTCAAAGAAAATGCATTTTT
* * * * * *
553133 GCCACTAGTTTTTGTAAAGTCTAAGTTCATTCCTTAATTGAGACAAATATGGATTCTAGTAAGGA
1 CCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* **
553198 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCGTCATTAGGATAAATGATATTTTT
66 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * ** *
553263 GATTTTCTTTTGCGTGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTA
131 GATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA
* * * * * * * *
553328 AA-ATGACAAAACGTTGATTTTCGTGACAGTCTCCATTCTTTTTAAGTTTGGGAACCAAAAAGAC
196 AATAAGAC-AAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAA-A-
* * *
553392 ATTCCATTCATTAGGATACATGACATATTGATGCTTTGGTGTCACAAGAAAATGTTTTTCTTTCT
258 ATTCCCTTCATTAGGATACATGAC--ATTGATGCTTTGGTGTCACAAGAAAA-GCTTTTCTTTCC
* * * * *
553457 GCCATTTTTGTTAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAATAGTCATACTAAT-T
320 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * *
553521 CCTATTCTTTGT-AGGATTAGGCACCAAAAACACAGTATTCTCTTTAGGATACACAATATTGATG
385 CCT-TTCTTT-TCAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTAATG
* * *
553585 CTATGGTTTTGAAA-AAATTGCA-TTTT
448 CTTTGGTTTTCAAAGAAAATGCATTTTT
* * * * * * * *
553611 CCCACTAATTTTTGTAATGTCTAAGTTTAAT-ACTTAAATGAGAGAAACATGGATTTTTGAAAGG
1 CCCACTAATTTTTGTAAAGTCTAAG-TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
* * * * * *
553675 ATCTTTATTCATTTTGTGATTAAGCACTATTAACACATTCTCCTTATTATGATAAGTGATATTGA
65 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
** * * * * *
553740 TGGCTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAGTTAAACCCTT
130 TGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * ** * * *
553805 ATATAAGGCAAGCGTTAATTCTCGCAACAGTCTTCATTCGTTTCAAGATTGGGAACCAAAAACAC
195 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAA-A-
* * * * *
553870 ATTCCCTTCATTAGGATGCAAGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTACGATC
258 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-C
* * * * *
553935 AATTTTTGACAGAATCAAAGTTTCTCTCTTAAATAAAACAAACATGAATTCAATCATACTAATCC
322 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-T-ACTCATACTAATCC
* * * * **
554000 CCATTCTTTTTAGGATTAGTCACCATAAACATAGTCTTCTCAGTAGGATACACGATATTTAA-GC
385 CCTTTCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATA-TTAATGC
**
554064 TTTATTTTTGC-AAGAAAA-G--TTTTT
449 TTTGGTTTT-CAAAGAAAATGCATTTTT
** * * * * *
554088 TTCACCAATTTTTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGA
1 CCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* * * * *
554153 TCTACATT-ATTTTTATGATTAGGCACTATAAACACATTTTCCACATTAAGATAAATGATATTGA
66 TCTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
554217 TGATTTTTTTTTGCATAAAAATCTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCT
130 TGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * * *
554282 AAAAAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAGAACAC
195 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAA-AA-AA
* * * *
554347 ATTCCCTTCATTAGGGTACATGACATTGAT-ATTGTGGTGTCACAAG-AAAGCTTTTCTCTCCAT
258 ATTCCCTTCATTAGGATACATGACATTGATGCTT-TGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * *
554410 CATTTTTGACAGAATCATAA-TTCGTCTTTTAAATAAGAC-AACTATGAATACTCATACTAATCC
322 CATTTTTGATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTCATACTAATCC
* * * * * *
554473 CCATTCTTTTTAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACATGTTATTGATTCT
385 CCTTTCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTAATGCT
* *
554538 TTGGTTTTGAAAG-AAATGGATTTTT
450 TTGGTTTTCAAAGAAAATGCATTTTT
* * * *
554563 CCCACTAATTTTT-TTAAGTCTAAGTTCATTG-CTTAAATGAGACAAACATGGATTCGAATAAGG
1 CCCACTAATTTTTGTAAAGTCTAAGTTCA-TGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
* *
554626 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTTCTCATTAGGATAAATGATATTGA
65 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * *
554691 CGATTTTCTTTTGTATGAAAGTCTTTCCTTAGCCTTATTTTCCTTAAAATCAAAATTTATCCCTT
130 TGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
*
554756 AAATAAGACAAGTATCG
195 AAATAAGACAAGCATCG
554773 GCTCTTTATT
Statistics
Matches: 1762, Mismatches: 307, Indels: 94
0.81 0.14 0.04
Matches are distributed among these distances:
471 4 0.00
472 88 0.05
473 351 0.20
474 180 0.10
475 88 0.05
476 104 0.06
477 279 0.16
478 302 0.17
479 159 0.09
480 201 0.11
481 6 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (475 bp):
CCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
GATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA
AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAAATT
CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATT
TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTC
TTTTCAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTAATGCTTTGGTT
TTCAAAGAAAATGCATTTTT
Found at i:554547 original size:951 final size:944
Alignment explanation
Indices: 552181--554767 Score: 2971
Period size: 951 Copynumber: 2.7 Consensus size: 944
552171 GGCTTTCTGC
* * *
552181 CCACTAATTTTTGTAAAGACTAAGCTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
1 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * *
552246 CTTCATTCTTATTGTGATTAGGCACTATAAAACACATTCTCCTTATTATGATAAATGATATTGAT
66 CTTCATTATTTTTGTGATTAGGCACTAT-AAACACATTCTCCTCATTAAGATAAATGATATTGAT
* * * *
552311 GGTTTTCTTTTCCATGAAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
130 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTA
* * * * * **
552376 TATATGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAAGAAAAAAAATG
195 AAAATGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAAA--
* * *
552441 CATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTTTTTCTAC
258 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTAC
* * *
552506 TATTTTTGATAGAATCAATGTTTGTCTCTTCAAATAAGACAAACATAAATAGTCATACTAATCCC
323 -ATTTTTGATAGAATCAA-ATTTGTCT-TTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * * * * * *
552571 TATTGTTTTCAGGATTTGGCACCATAAACATTA-TCTTCTCATAAGGATACACGATATTAATGCT
385 TATTCTTTTTAGGATTAGGCACCAAAAACA-TAGTCTTCTCTTTAGGATACACGATATTGATGCT
* * * * * * * * * *
552635 TTGG-TTTCACAAGATAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTATG-TTCATGGCTCAAT
449 TTGGTTTTGAAAAAAT-TGC-ATTTTCCCACTAATTTTTGT-AAGTCTAAGTTTAAT-GCTTAAA
* * * * * *
552698 TGAGACAAACATGGATTCTTGTAAGGATATTCATTCATTTTGTTATTAAACAATA-TATACACAT
510 TGAGACAAACATGGATTTTTGAAAGGATCTTCATTCATTTTGTGATTAAGCACTATTA-ACACAT
* *
552762 TTTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCTTAT
574 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCTTAT
* * * * * *
552827 TTTCCTTAAAATAAAAATTCATCCTTTAAATAAGACAAGCATCGACTCTCGTAAAGTCCCATTCT
639 TTTCCTTAAAATCAAAATTAATCCCTTAAATAAGACAAGCATCAACTCTCGCAAAGTCCCATTCG
* * * *
552892 TTTCAAAATTAGGAACCAAAAAAAGTTCCATTTTTAGGGTACATGACATTGATGCTTTGGTGTCG
704 TTTCAAAATTAGGAACCAAAAAAAGTTCCATTATTAGGATACAAGACATTGATGCTTTGGTGTCA
* * * * * * * *
552957 GAAGAAAAGCTTTTCTTTCCACCACTTTTGATAGAATCAACGTTTGTCTCTTAAATGAGACAACT
769 CAAGAAAAGCTTTTCTTACCACAACTTTTGACAGAATCAAAGTTTCTCTCTTAAATAAAACAACT
* * * **
553022 ATGAATACTCACACTAATCCCCTTTCTTTTCAGGATTAGGTACCAAAAACACAGTCTTTTCTTTA
834 ATGAATAATCACACTAATCCCCATTCTTTTCAGGATTAGGTACCAAAAACACAGTCTTCTCAGTA
* * *
553087 GGTTACATGATATTAACGCTATGGTTTTCAAAGAAAATGCATTGTTG
899 GGATACACGATATTAACGCTATAGTTTTCAAAGAAAATG-ATTGTTG
* * * * * * * *
553134 CCACTAGTTTTTGTAAAGTCTAAGTTCATTCCTTAATTGAGACAAATATGGATTCTAGTAAGGAT
1 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * **
553199 CTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCGTCATTAGGATAAATGATATTTTT
66 CTTCATT-ATTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGAT
* * * * * *
553263 GATTTTCTTTTGCGTGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATAAAAATTCAT-CCCTT
130 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTA
* * * * * * *
553327 AAAATGACAAAACGTTGATTTTCGTGACAGTCTCCATTCTTTTTAAGTTTGGGAACCAAAAAGAC
195 AAAATGAC-AAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAAAC
* *
553392 ATTCCATTCATTAGGATACATGACATATTGATGCTTTGGTGTCACAAGAAAATGTTTTTCTTTCT
259 ATTCCCTTCATTAGGATACATGAC--ATTGATGCTTTGGTGTCACAAGAAAA-GCTTTTCTTTCT
* * * * *
553457 GCCATTTTTGTTAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAATAGTCATACTAATTC
321 -ACATTTTTGATAGAATCAAA-TTTGTCTTTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
553522 CTATTCTTTGTAGGATTAGGCACCAAAAACACAGTATTCTCTTTAGGATACACAATATTGATGCT
384 CTATTCTTTTTAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTGATGCT
* *
553587 ATGGTTTTGAAAAAATTGCATTTTCCCACTAATTTTTGTAATGTCTAAGTTTAATACTTAAATGA
449 TTGGTTTTGAAAAAATTGCATTTTCCCACTAATTTTTGTAA-GTCTAAGTTTAATGCTTAAATGA
* *
553652 GAGAAACATGGATTTTTGAAAGGATCTTTATTCATTTTGTGATTAAGCACTATTAACACATTCTC
513 GACAAACATGGATTTTTGAAAGGATCTTCATTCATTTTGTGATTAAGCACTATTAACACATTCTC
* * * ** * *
553717 CTTATTATGATAAGTGATATTGATGGCTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
578 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCTTATTTTC
* * * * * * * * *
553782 CTAAAAATCAAAGTTAAACCCTTATATAAGGCAAGCGTTAATTCTCGCAACAGTCTTCATTCGTT
643 CTTAAAATCAAAATTAATCCCTTAAATAAGACAAGCATCAACTCTCGCAA-AGTC-CCATTCGTT
* * * * *
553847 TCAAGATTGGGAACCAAAAACACA-TTCCCTTCATTAGGATGCAAGATATTGATGCTTTGGTGTC
706 TCAAAATTAGGAACCAAAAA-A-AGTTCCATT-ATTAGGATACAAGACATTGATGCTTTGGTGTC
* *
553911 ACAAGAAAAGCTTTTCTTACGATCAATTTTTGACAGAATCAAAGTTTCTCTCTTAAATAAAACAA
768 ACAAGAAAAGCTTTTCTTACCA-CAACTTTTGACAGAATCAAAGTTTCTCTCTTAAATAAAAC-A
* * * *
553976 AC-ATGAATTCAATCATACTAATCCCCATTCTTTTTAGGATTA-GTCACCATAAACATAGTCTTC
831 ACTATGAA-T-AATCACACTAATCCCCATTCTTTTCAGGATTAGGT-ACCAAAAACACAGTCTTC
* * * *
554039 TCAGTAGGATACACGATATTTAA-GCTTTATTTTTGC-AAGAAAA-G-TTTTTT
893 TCAGTAGGATACACGATA-TTAACGCTATAGTTTT-CAAAGAAAATGATTGTTG
* * *
554089 TCACCAATTTTTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGAT
1 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * *
554154 CTACATTATTTTTATGATTAGGCACTATAAACACATTTTCCACATTAAGATAAATGATATTGATG
66 CTTCATTATTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATG
* * * *
554219 ATTTTTTTTTGCATAAAAATCTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAA
131 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAA
* * * * * * *
554284 AAAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAGAACACAT
196 AAATGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAAACAT
* * * *
554349 TCCCTTCATTAGGGTACATGACATTGAT-ATTGTGGTGTCACAAG-AAAGCTTTTCTCTCCATCA
261 TCCCTTCATTAGGATACATGACATTGATGCTT-TGGTGTCACAAGAAAAGCTTTTCTTTCTA-CA
* * * *
554412 TTTTTGACAGAATCATAATTCGTCTTTTAAATAAGAC-AACTATGAATACTCATACTAATCCCCA
324 TTTTTGATAGAATCA-AATTTGTCTTTTAAATAAGACAAAC-ATGAATAGTCATACTAATCCCTA
* * *
554476 TTCTTTTTAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACATGTTATTGATTCTTTG
387 TTCTTTTTAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTGATGCTTTG
* * * *
554541 GTTTTGAAAGAAA-TGGATTTTTCCCACTAATTTTTTTAAGTCTAAGTTCATTGCTTAAATGAGA
452 GTTTTGAAA-AAATTGCA-TTTTCCCACTAATTTTTGTAAGTCTAAGTTTAATGCTTAAATGAGA
* * * * *
554605 CAAACATGGA--TTCGAATAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTT
515 CAAACATGGATTTTTG-A-AAGGATCTTCATTCATTTTGTGATTAAGCACTATTAACACATTCTC
* * * *
554668 CTCATTAGGATAAATGATATTGACGATTTTCTTTTGTATGAAAGTCTTTCCTTAGCCTTATTTTC
578 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCTTATTTTC
*
554733 CTTAAAATCAAAATTTATCCCTTAAATAAGACAAG
643 CTTAAAATCAAAATTAATCCCTTAAATAAGACAAG
554768 TATCGGCTCT
Statistics
Matches: 1365, Mismatches: 235, Indels: 70
0.82 0.14 0.04
Matches are distributed among these distances:
949 3 0.00
950 29 0.02
951 471 0.35
952 280 0.21
953 165 0.12
954 9 0.01
955 275 0.20
956 49 0.04
957 7 0.01
958 72 0.05
959 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (944 bp):
CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
CTTCATTATTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATG
ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAA
AAATGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAAACAT
TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACATT
TTTGATAGAATCAAATTTGTCTTTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
TTTTAGGATTAGGCACCAAAAACATAGTCTTCTCTTTAGGATACACGATATTGATGCTTTGGTTT
TGAAAAAATTGCATTTTCCCACTAATTTTTGTAAGTCTAAGTTTAATGCTTAAATGAGACAAACA
TGGATTTTTGAAAGGATCTTCATTCATTTTGTGATTAAGCACTATTAACACATTCTCCTCATTAG
GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTGCCTTATTTTCCTTAAAAT
CAAAATTAATCCCTTAAATAAGACAAGCATCAACTCTCGCAAAGTCCCATTCGTTTCAAAATTAG
GAACCAAAAAAAGTTCCATTATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
TTCTTACCACAACTTTTGACAGAATCAAAGTTTCTCTCTTAAATAAAACAACTATGAATAATCAC
ACTAATCCCCATTCTTTTCAGGATTAGGTACCAAAAACACAGTCTTCTCAGTAGGATACACGATA
TTAACGCTATAGTTTTCAAAGAAAATGATTGTTG
Found at i:556263 original size:291 final size:291
Alignment explanation
Indices: 555708--556263 Score: 694
Period size: 291 Copynumber: 1.9 Consensus size: 291
555698 ACGAAGAACA
* * * * *
555708 CATTCCTTTCATTAGGATACATGACATTGGTGCTTTGGTGTCGCAGGAAAAGCTTTTTTTTCAAC
1 CATTCCCTTCACTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGATTTTTTTTCAAC
* *
555773 CGTTTTTGACAGAATCAAAGTTTATCTCTTAATTAAGACAACTATGAATACTTACACTAATTCCC
66 CGTTTTTGACAGAATCAAAGTTTATCTCTTAAATAAGACAACTATGAATACTCACACTAATTCCC
* ** * *
555838 ATTCTTTTCAGGATTAGGCACCAAAAACATAATATTCTCTTTAAGATACATGATATTGATGCTAT
131 ATTCTTTTCAGGATTAGGCACCAAAAACATAATATTCTCTATAAGATACACAATATTCACGCTAT
* * * * *
555903 GGTTTTGAAAGAAATGCATTTTTCCCACTAATTTTTGTAATGTCTAAGTTCATTCCTTAAATGAG
196 GGTTTTGAAAGAAAGGCATTTTTCCCACCAATTTTTCTAATGTCTAAGTTCATGCCTCAAATGAG
555968 ACAAATATGGATACTTTGGGAACCAAAAACT
261 ACAAATATGGATACTTTGGGAACCAAAAACT
* *
555999 CATTCCCTTCACTAGGATACATGGCATTGATGCTTTGGTGTCGTAAGAAAAGATTTTCTTTTC-A
1 CATTCCCTTCACTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGATTTT-TTTTCAA
* *
556063 CCGTTTTTGATCA-AATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTCATACTAA-T
65 CCGTTTTTGA-CAGAATCAAAGTTTATCTCTTAAATAAGAC-AACTATGAATACTCACACTAATT
* ** * * * * * *
556125 CCTTATTCTTTTTGGGATTAGGCACCATAAACTTAGTCTTCT-TATAAGGATATACAATGTTCAC
128 CC-CATTCTTTTCAGGATTAGGCACCAAAAACATAATATTCTCTATAA-GATACACAATATTCAC
* * *
556189 GCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCACCAATTTTTCTGAA-GTCTAAGTTTATGCCTC
191 GCTATGGTTTTGAAAGAAAGGCATTT-TTCCCACCAATTTTTCT-AATGTCTAAGTTCATGCCTC
*
556252 AAATTAGACAAA
254 AAATGAGACAAA
556264 CATTGATTCT
Statistics
Matches: 224, Mismatches: 34, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
290 10 0.04
291 202 0.90
292 12 0.05
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (291 bp):
CATTCCCTTCACTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGATTTTTTTTCAAC
CGTTTTTGACAGAATCAAAGTTTATCTCTTAAATAAGACAACTATGAATACTCACACTAATTCCC
ATTCTTTTCAGGATTAGGCACCAAAAACATAATATTCTCTATAAGATACACAATATTCACGCTAT
GGTTTTGAAAGAAAGGCATTTTTCCCACCAATTTTTCTAATGTCTAAGTTCATGCCTCAAATGAG
ACAAATATGGATACTTTGGGAACCAAAAACT
Found at i:557837 original size:20 final size:20
Alignment explanation
Indices: 557812--557863 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
557802 TACAAGCCAA
** *
557812 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTGG
557832 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
557851 TGTATCGATACAA
1 TGTATCGATACAA
557864 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:557869 original size:19 final size:18
Alignment explanation
Indices: 557812--557869 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
557802 TACAAGCCAA
*
557812 TGTATCGATACAATTTTTTG
1 TGTATCGATACAA--TTTGG
*
557832 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
557851 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
557870 CTACTGCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
20 12 0.36
21 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:558692 original size:22 final size:20
Alignment explanation
Indices: 558664--558706 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 20
558654 CATCATTTCC
558664 ATAAACACAAAGTACAATGCAA
1 ATAAACACAAAGT-CAA-GCAA
558686 ATAAACACAAAGTCAAGCAA
1 ATAAACACAAAGTCAAGCAA
558706 A
1 A
558707 ACATTAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.24
21 3 0.14
22 13 0.62
ACGTcount: A:0.60, C:0.19, G:0.09, T:0.12
Consensus pattern (20 bp):
ATAAACACAAAGTCAAGCAA
Found at i:564274 original size:21 final size:21
Alignment explanation
Indices: 564245--564289 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
564235 AAGTTTTTAT
*
564245 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
564265 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
564287 TTT
1 TTT
564290 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:565484 original size:32 final size:30
Alignment explanation
Indices: 565448--565506 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
565438 GAAATCAAAT
565448 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
565480 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
565507 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:565791 original size:20 final size:20
Alignment explanation
Indices: 565766--565817 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
565756 TACAAGCCAA
** *
565766 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTGG
565786 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
565805 TGTATCGATACAA
1 TGTATCGATACAA
565818 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:565823 original size:19 final size:18
Alignment explanation
Indices: 565766--565823 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
565756 TACAAGCCAA
*
565766 TGTATCGATACAATTTTTTG
1 TGTATCGATACAA--TTTGG
*
565786 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
565805 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
565824 CTACTGCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
20 12 0.36
21 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:567360 original size:475 final size:475
Alignment explanation
Indices: 566175--570282 Score: 4023
Period size: 475 Copynumber: 8.7 Consensus size: 475
566165 CCTAACACAA
* ** * * * *
566175 ACTAATCCCCATTCTTTTTAGGATTAGGTACCATGAACTTAGTCTTTTCATAACGATACACGATA
1 ACTAATCCCCATTCTTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGATA
*** * * *** * * * *
566240 TTGGCGTTTTAGCTTCCCCAA-AAA-GACTTTCTTCACACCAATTTTTATAAAATCTAAGTTTGT
66 TTTTAGCTTT-GGTTTTGCAAGAAAGGA-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * *
566303 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTAGTATA
129 GCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * ** * *
566368 AACACTTTCTCCTCATTATGATAAATTACATTTACAATTTATTTTTTGC-GGAGAAATCTTTTCT
194 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTT-TCTTTTGCATG-GAAATCTTTTCT
* * * * * * * *
566432 TTGCCCGATTTT-CTTCAAAATAAAAATTTATCTCTTAAATATCATAAGCATTGATTCTAATAAC
257 TTGCCCTATTTTCCTT-AAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAAC
* * * * ** *
566496 TGTCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTTCCTTCATTAGGATTTATAACATTG
321 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
** * * *
566561 ATGCTACGGTGTTGCAAG-AAAGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCTCT
386 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CACCGTTTTTGATAGAATCAAAGTTTATCTCT
** * *
566625 GGAATAAGACAAACAT-AAGTAGTAAT
450 TAAATAAGACAAACATGAA-TAGTCAC
* * *
566651 ACTAATCCCCGTTCTTTTTAGGATTAAG-CACCATAAACATAGTCTTCTCATAAGGGTACACGAT
1 ACTAATCCCCATTCTTTTGAGGATT-AGCCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * * * *
566715 A-GTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTGCCCACCAATTTTAGTATAGTCTAAGTTCA
65 ATTTTA-GCTTTGGTTTTGCAAGAAAGGATTTCTT-CCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
566779 TGCCTCAAATGAGACAAACTTTG-TTTTGAGTAAGGATCTTCATTCATTTTGTGATTAGCCACTA
128 TGCCTCAAATGAGACAAACATTGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * *
566843 TAAACACATTTTCCTCATTAGGACAAATGATATTGTTGATTTTCTTTTGCATGGAAATCTTTTCT
192 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* ** * *
566908 TCGCTATATTTTCCTTAAAATCAAAATTCATCCCTTAAAGT-TGACAAGTATTGATTCTAGTAAC
257 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA-TATGACAAGCATCGATTCTAGTAAC
* * * ** * *
566972 AGTCTCGATTCGTTTCAAGATTAGGAATTAAAAACACAATCCCTTCACTAGGATACATGACATTG
321 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * * ** **
567037 AAGCTTTGGTGTCACAAGAAAAGCTTTTCTTGTGACCGATTTTGACAGTGTCAAAGTTTCCCTCT
386 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCACCGTTTTTGATAGAATCAAAGTTTATCTCT
*
567102 TAAATAAGAGAAACATGAATAGTCAC
450 TAAATAAGACAAACATGAATAGTCAC
* * *
567128 ACTAATCCCCATTCTTTTGAGGATTAGCCACCATAAACATAATCTTCTCATTAGGGTACACGATA
1 ACTAATCCCCATTCTTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * *
567193 TTTTA-CTTTGGTTTTGCAAGAATGGATTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGC
66 TTTTAGCTTTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * *
567257 CTCGAATGAGACAAACTTTGATT-TGAGTAAGGATTTTCATTTACTTTGTTG-TTAGGCACTATA
131 CTCAAATGAGACAAACATTGATTCT-AGTAATGATCTTCATTCATTTTG-TGATTAGGCACTATA
* * *
567320 AACACATTCTCCTTATTAGAATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTC
194 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* *
567385 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATCTGACAAGCATCAATTCTAGTAACAGT
259 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAACAGT
* * * *
567450 TTCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACACTGAAG
324 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * ** * * * *
567515 CTTTAGTGTCACAAGAAAAGCTTTTCATGTGACCGATTTTGGCAGAATTAAATTTTCTCCCTTAA
389 CTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAA
* *
567580 ATAAGAGAAACATGAAGAGTCAC
453 ATAAGACAAACATGAATAGTCAC
* * *
567603 ACTAATCCCCATT-TCTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATTAGGATACACGAT
1 ACTAATCCCCATTCT-TTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * * * * *
567667 ATTTAAGCTTTGGTTTTGCAAGAACGAATTTCTGCTCACCAATTTTTCTAAAGTCTAAGTTTGTG
65 ATTTTAGCTTTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* *
567732 CCTCAAATGAGACAAACA-TGAATTCTAGTAATGATCGTCATTTATTTTGTGATTAGGCACTATA
130 CCTCAAATGAGACAAACATTG-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
567796 AACACTTTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATTGCAATATTTT-TTT
194 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * * * *
567860 CGCCTTATTTTTCATAAAATCAAAATTCATCCCTTAAAAAGGGCAAGCATTGATTCTCA-TAACA
259 -GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT-AGTAACA
* * * * * *
567924 GT-TTC-TTC--TT-GAGATTGGGAACCAAAAACATAATCCCTTCACTAGGATACAAGACATTGA
322 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * *
567984 TGCTTTAGTGTCTCAAGAAATGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTATCTCTT
387 TGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCACCGTTTTTGATAGAATCAAAGTTTATCTCTT
* * *
568049 AAATAAGACAAACATGAACACTCAA
451 AAATAAGACAAACATGAATAGTCAC
* *
568074 ACTAGTCCCCATTCTTTTTG-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC-A-
1 ACTAATCCCCATTC-TTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * * *
568136 ATGTTGATGCTTTGGTTTCGCAA-AAAAGCTTTCTTCCCATCAATTTTTGTAAAGTCTAAGTTCG
65 AT-TTTA-GCTTTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
568200 TGCCTCAAATGAAACAAACATGGATTCTAGTAATGATTTTAATTCATTTTGTGATTAGGCTCTAT
128 TGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
568265 AAACCCATTCTCCACATTAGGATAAATGATATTGATG-TTTTCTTTTGCATGGAAATCATTTCTT
193 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
568329 TG-CC------CC-----AT-----TTC-T---TTGAATATGACAAGCATCGATTCTCA-TAATA
258 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT-AGTAACA
* * * *
568372 GTCTCTATTCTTTTCAAGATTGGGAACCAAGAACACATTCTC-TCTTTAGGATACATGACATTGA
322 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
*
568436 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTGATAGAATTAAA-TTTATCTCT
387 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CACCG-TTTTTGATAGAATCAAAGTTTATCTCT
* * *
568500 TAAATAAGACAAGCATGAATACTCAT
450 TAAATAAGACAAACATGAATAGTCAC
* * * * ** * *
568526 ACTAATCCTCATTCTTTTTG-GGATTAGGCTCCAAAAACATAGTCTTCTTTTTAGGATACATGAT
1 ACTAATCCCCATTC-TTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * * *
568590 A-TTGATG-TTATGGTTTCG-AAGGAAAAGGCAATT-TTCCCACTAATTTTGGTAAAGTCTAAGT
65 ATTTTA-GCTT-TGGTTTTGCAA-G-AAAGG-ATTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * ** * * *
568651 TTGTGCCTCAAATTAGATGAACA-TGATTCTAGCAATGATCATCATTCATTTTGTGATTTGGCAC
125 TCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * *
568715 TATAAACACATTCTCCTCATTGGGATAAATGATGTTGGA-GATTTTCTTTTGCGTGGAAATCTTT
190 TATAAACACATTCTCCTCATTAGGATAAATGATATT-GATGATTTTCTTTTGCATGGAAATCTTT
* * ** * * * *
568779 TGTTTGCTCTGGTTT-CTTAAAATAAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTTGTG
254 TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTA
* * * * **
568843 ATAGTCT-CGTTCCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCACTAACATACATGAC-
319 ACAGTCTCCATT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * *
568906 TTCGATGCTTTGGTATCGCAAGAAAAGCTTTTCCTTCCACCGTTGTTGATAGAATCAAAATTTGT
383 TT-GATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCACCGTTTTTGATAGAATCAAAGTTTAT
* * * * *
568971 CCCTTAAATAAAACAAATATGAATTGTCAA
446 CTCTTAAATAAGACAAACATGAATAGTCAC
* * * * * * * *
569001 ACTAATCCCTATTC-TTTGTAAGATTAGGCACCATGAACTTAGTCTTTTCATAACGATACATGAT
1 ACTAATCCCCATTCTTTTG-AGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * * *** * * *
569065 A-TTGATGCTTTAGCTTCGCCAA-AAAACCTTTCTTCACACCAATTTTTGTAAAATCTAAGTTTG
65 ATTTTA-GCTTTGGTTTTG-CAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
569128 TGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCAGTAT
128 TGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
569193 AAACACTTTCTCCACATTATGATAAATTATATTTATGATTTT-TTTTGCGTAGAAATCTTTTCTT
193 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * ** * * * **
569257 TGCCCGATTTT-CTTCAAAATAAAAATTTGTCTCTTAAATATCACAACCATTAATTCTCA-TAAC
258 TGCCCTATTTTCCTT-AAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT-AGTAAC
* *
569320 AGTCTCCATTCTTTTCAAGATT-GGAACCCAAGAACACATTCCCTTTATTAGGATTTACA--ACA
321 AGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGA--TACATGACA
* * *
569382 TTGATGCTATGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCACAGTTTATC
383 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CACCGTTTTTGATAGAATCAAAGTTTATC
* * *
569447 TCTTGAATAAGACAAACATGAATAGTAAT
447 TCTTAAATAAGACAAACATGAATAGTCAC
* * * *
569476 ACTAATCCCCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGGTACATGTTA
1 ACTAATCCCCATTCTTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * * * *
569541 -TTAACTCTTTGGTTTTACAAGAAAGGCTTTCTTGCCCAGCAATTTTAGTATAGTCTAAGTTCAT
66 TTTTA-GCTTTGGTTTTGCAAGAAAGGATTTCTT-CCCACCAATTTTTGTAAAGTCTAAGTTCGT
* ** * *
569605 GCC-CTAAATGAGACAAACTTTGATTGGAGTAAGGATCTTCATTCACTTTGTGATTAGGCACTAT
129 GCCTC-AAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
569669 AAACACATTCCCCTCATTAGAATAAATGATTTTGATTATTTTCTTTTGCATGAAAATCTTTTCTT
193 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* ** * * *
569734 TGCCCTATTTTCCTTAAAATCAACATTTGTCCC-TAAATCTGACAAGTATCGATTCTAGT-GCAG
258 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAACAG
* * * *
569797 TCTCCATTCTATTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACAAGACATTGAA
323 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** * * * * * * *
569862 GCTTTCGTGTCATAA-AAAAGCTTTTCTTGTGACTGATTTTGACAAAATCAAAGTTTTTTTCTTA
388 GCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCACCGTTTTTGATAGAATCAAAGTTTATCTCTTA
*
569926 AATAAGAGAAACATGAATAGTCAC
452 AATAAGACAAACATGAATAGTCAC
* * * * * *
569950 ACTAATCCCTATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATTAGGATAAATGATA
1 ACTAATCCCCATTCTTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * *
570015 TTTAAGCTTTGGTTTTGCAAGAATGGATTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGC
66 TTTTAGCTTTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * * ***
570080 CTCAAATGAGACAAACATGGATTCAAGTAATGATCGTCTTTTATTTTGTGAATATAAACTATAAA
131 CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
570145 TACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTCTGCATGGCAATC-TTTCTTTCG
196 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-G
* * * * * *
570209 CCTTATTTTTCTTAAAATAAAAATTCATCCCTTAAAAAAGGCAAGCATCGATTCTCA-TAACAGT
260 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT-AGTAACAGT
570273 CTCCATTCTT
324 CTCCATTCTT
570283 CTTGACATTG
Statistics
Matches: 3012, Mismatches: 513, Indels: 215
0.81 0.14 0.06
Matches are distributed among these distances:
448 27 0.01
449 1 0.00
450 3 0.00
451 8 0.00
452 153 0.05
453 106 0.04
454 76 0.03
455 3 0.00
457 2 0.00
460 1 0.00
462 1 0.00
465 2 0.00
468 1 0.00
469 23 0.01
470 131 0.04
471 183 0.06
472 12 0.00
473 163 0.05
474 330 0.11
475 913 0.30
476 587 0.19
477 278 0.09
478 8 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
ACTAATCCCCATTCTTTTGAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACACGATA
TTTTAGCTTTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTAGTAACAGTCT
CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATA
AGACAAACATGAATAGTCAC
Found at i:572407 original size:475 final size:473
Alignment explanation
Indices: 571075--573205 Score: 2293
Period size: 475 Copynumber: 4.5 Consensus size: 473
571065 TCATTAAAAC
** * * *
571075 AATCAAAGTTTGCCTTTTAAATAGGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGG
1 AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * * ** * ***
571140 ATTAGGCACTATACACAGAGT-TATCTCATTAGGATAGACAAAATTGATGCTTTGGTTTGGGAAG
66 ATTAGGCACCATAAACATAGTCT-TCTCA-TAGGATACATGATATTGATGCTTTGGTTTTACAAG
* * ** * * *
571204 AAAGGCTTTCTTCCTTTCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
129 AAAGCCTTTTTTCCACT-AATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGA
* * **
571269 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACCTTCGTTTCATTAGGATA
193 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCACATTAGGATA
* * ** *
571334 AATGATATTGATGAAGTTCTTTTGCAT-GAAATTATTTACTTTGCCCGGTTTTCCTTAGAATCAA
257 AATGATATTGATGAATTTCTTTTGCATGGAAA-TATTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * *
571398 AGTTTATCGCTTAAATAAGGCAAGCGTTGTTTCTCATAACAGTCTCCATTCCTTTCAAGATTTGG
321 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * * ** ** *
571463 ATCCAAAAACGCATTCCCTTCATTAGGATATATGACATGGACACTTTGGTGTCGCAAGAAAAGGT
386 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCT
**
571528 TTTCTTTCCACTGTTTTTGATAG
451 TTTCTTTCCACCATTTTTGATAG
* * * * * * * *
571551 AATGAAGGTTTGTCTCTTAAATAAGACAAACTTGAATAGTCACACTAATCTCTATTCTTTTTAGG
1 AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * *
571616 ATTAAGTACCATAAACTTAGTCTTCTCATAGGGATACATGATATTGATGCTTTGGTTTTACAAGA
66 ATTAGGCACCATAAACATAGTCTTCTCATA-GGATACATGATATTGATGCTTTGGTTTTACAAGA
* * * *
571681 AAGGCTTTCTT-CACTCCAAATTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACATGGA
130 AAGCCTTTTTTCCACT--AATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGA
* * * * *
571745 TTCTAGTAATGATCGTCATTCTTTTTGTGATTAGGTTACTATAAACACGTTCTCCTCATTAGGAT
193 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CACTATAAACACATTCT-CACATTAGGAT
* *
571810 AAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCATATTTTCCTTAAAATCAA
256 AAATGATATTGATGAATTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
571875 AGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGGTTGGG
321 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * *
571940 AAACAAGAACACATTCCCTTTATTAGGATACATGACATTAATGCTTTGGTCTCACAAGAAAAGCT
386 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCT
* * *
572005 TTTCGTTCCACCGTTTTTGACAG
451 TTTCTTTCCACCATTTTTGATAG
*
572028 AATCAAAGTTTACCTCTTAAATAAGAC-AACTATGAAT-GCTCATACTAATCCCCATTCTTTTCA
1 AATCAAAGTTTATCTCTTAAATAAGACAAAC-ATGAATAG-TCATACTAATCCCCATTCTTTTCA
* * * * *
572091 GGATTAGGCACCAAAAACATAATCTTCTCTTGAGGAT-CATGATATTGATACTATGGTTTTA-AA
64 GGATTAGGCACCATAAACATAGTCTTCTCAT-AGGATACATGATATTGATGCTTTGGTTTTACAA
* * *
572154 GGAAATCCATTTTTTCCACTAATTTTTGTAAAGTCTAAGTTCATTCCTTAATTGAGACAAACATG
128 -GAAAGCC-TTTTTTCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATG
** *
572219 GATTCT-GGCATGGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGG
191 GATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CACATTAGG
* * * *
572283 ATAAATGAT-TGTGATGATTTTCTTTTGCATGGAAATCTTTCCTTTGCCTTATTTTCCTTAAAAT
254 ATAAATGATAT-TGATGAATTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
** ** *
572347 CAGTGTTTGTCCCTTAAATATGGCAAGCATTGATTCTCATAACAGTCTCCACTT-TTTTCAAGAT
318 CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCA-TTCTTTTCAAGAT
** ** * ** * *
572411 TGGGAACCAAGAAA-ACATTCTTTTTTTTAGGGTACATGATGTTGATGCTTTGGTGTCGTAAGAA
382 TGGGAACCAA-AAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAA
* * * * * *
572475 AAGGTTTTATTTGCAACATTTTTTAGAG
446 AAGCTTTTCTTTCCACCATTTTTGATAG
* * *
572503 AATGAATGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGG
1 AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
* * * * * *
572568 ATTAGGCACCATAAACATTGTCTTCTCATTAAGATAGATGAAATTGATGCTTTGGCTTCACAAGA
66 ATTAGGCACCATAAACATAGTCTTCTCA-TAGGATACATGATATTGATGCTTTGGTTTTACAAGA
* * ** * ** **
572633 AAGGCCTTCTTGCCACTAATTTTTAAAAAGTTTAAGTTTGTG-CTTCAAATGAGACAAACATAAA
130 AA-GCCTTTTTTCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTT-AAATGAGACAAACATGGA
** *
572697 TTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTATAAATACATTCT-AC-TTGGAAGGA
193 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCACATT---AGGA
* * * * * *
572760 TAAATAATATTGATAAATTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCAT-AAATCA
255 TAAATGATATTGATGAATTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
572824 AAGTTCATCCCTTAAATAAGGCAAG-ATTTGATT-TCTGTAATAGTCCCCATTCTTTTCAAGATT
320 AAGTTCATCCCTTAAATAAGGCAAGCA-TTGATTCTC-ATAACAGTCTCCATTCTTTTCAAGATT
*
572887 GGCAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAA
383 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAA
**
572952 GCTTTTCTTTTAACCATTTTTGATAG
448 GCTTTTCTTTCCACCATTTTTGATAG
* * * * * * *
572978 AGTCAAAGTTTGTTTCTTAAATAAGAAAAACATGAATACTCATACTAATCCCTATTGTTTTCCA-
1 AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT-CAG
* * * **
573042 GATTAGGCACCATGAACATAGTCTTCTCACAAGAATACATGATATTGATGCTTTGGTTTTGTAAG
65 GATTAGGCACCATAAACATAGTCTTCTCA-TAGGATACATGATATTGATGCTTTGGTTTTACAAG
* * * * * * * *
573107 ATAGGCTTTCTTCCCAC-CATTATTTGTATAGACTAAGTTCATGCCTCAAATGAGACAAACGTGG
129 AAAGCCTTT-TTTCCACTAATT-TTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGG
*
573171 ATTCTTGTAATGATCTTCATTCATTTTGTGATTAG
192 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
573206 ACACAATTTG
Statistics
Matches: 1379, Mismatches: 240, Indels: 73
0.82 0.14 0.04
Matches are distributed among these distances:
473 2 0.00
474 18 0.01
475 594 0.43
476 462 0.34
477 294 0.21
478 9 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (473 bp):
AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGG
ATTAGGCACCATAAACATAGTCTTCTCATAGGATACATGATATTGATGCTTTGGTTTTACAAGAA
AGCCTTTTTTCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTC
TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCACATTAGGATAAATG
ATATTGATGAATTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCA
AAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
TTCCACCATTTTTGATAG
Found at i:574462 original size:454 final size:462
Alignment explanation
Indices: 573236--574780 Score: 1546
Period size: 454 Copynumber: 3.3 Consensus size: 462
573226 GTTTCATTTG
* **
573236 AGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGAAAGCCTTTCTTGCGTAACCAAAGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
* * * *
573301 AATATCATTTATCCTTATGAGAAGACAAACTTTATAGTGCCTAATCCTGAAAAGAAT-GGAGATT
66 AATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGA-ATT
* * *
573365 AGCATGACTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTAC-ATCAAAAATAGTGGAA
130 AGCATGAGTATTCATATTTATCTTATTTAAGAGACAAACTTTGATT-CTATCAAAAACAGTGGAA
* * * *
573429 AGAAAACCTTTTCTTGCGATACCAAAGCATCAGTGTCATGTATCTTAATGAAGGGAATGTGTTTT
194 AGAAAACCTTTTCTTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * * *
573494 TGGTTCCTAGTATTGAAAAGAATGAAGACTATTACGAGAATTGATGCTTGTCATAATTAAGGGAT
259 TGGTTCCTAATCTTG-AAAGAATTAAGACTGTTACGAGAATCGATGCTTGACATAATTAAGGGAT
* *
573559 GAATTTTTATTTTAAAGAAAATAGGGCAAAGAATAGATTCCATGTAAAAGAAAATCATCAATAAC
323 GAACTTTAATTTTAAAGAAAATAGGGCAAAGAATAGATTCCA-GT------AAAT-AT-AAT-AC
* * * * *
573624 ATTTACCCAAATCAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATTATTACTA
378 ATTTACCCAAATCAAGAGAATGTGTTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTA
* * *
573689 ATCCATGTTTGTCTCATTTG
443 ACCCATGTTTGTCTCAGTTA
* ** * * *
573709 ATGCACGAACTTAGACTTTACAAAAATTGGTGGGTTGAAAGCCTTTCATGAAAAACCGAAGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
* *
573774 AATATCATGTATCCTTATGAGAAGACTAGGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
66 AATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTA
* * * * * *
573839 GCATGAGTTTTCATATTTATCATATTTAAGATACAAACTTTGGTTCTATCAAAAATCAAT-AAAA
131 GCATGAGTATTCATATTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CAGTGGAAA
** * * *
573903 GAAAAGATTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTT
195 GAAAACCTTTTCTTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* * * * * * *
573968 GGTTCCTAATCTAGAAA-AGACTAGAGACCGTTTCGAGAATCGATGCTTGACTTATTTATGGGAT
260 GGTTCCTAATCTTGAAAGA-ATTA-AGACTGTTACGAGAATCGATGCTTGACATAATTAAGGGAT
* * * *
574032 GAACTTTAATTTTACAGAAAATAGGGCAAAGAA-A-A-T-CA-T-AAT-T-AT-CGTTTATCCTA
323 GAACTTTAATTTTAAAGAAAATAGGGCAAAGAATAGATTCCAGTAAATATAATACATTTACCCAA
*
574088 ATGAAGAGAATGTGTTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTAACCCATGTTT
388 ATCAAGAGAATGTGTTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTAACCCATGTTT
*
574153 TTCTCAGTTA
453 GTCTCAGTTA
* * * * ** *
574163 AGGCACGAACTTAGATTTTACATATAGTGGTGAAAAGAAAGCCTATCTTGCAAAACCAAAGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
* * *
574228 AGTATCATGTATCCTTATAAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAAGAATGGGAATT
66 AATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTG-AAAAGAATGGGAATT
* * * * * *
574292 AGTATGAGTACTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATTAGAAACGGTGGAAA
130 AGCATGAGTATTCATATTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAA
* *
574357 GAAAACCTTCTCTTGTGAAACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAATGTGTTTTT
195 GAAAACCTTTTCTTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* * * * * * ** * *
574422 GGTTCCCAATCTTGAAAGCAATTAAGACTGTTAGGAGAATCAACGCTTGCCTTTTTTAAGCGATA
260 GGTTCCTAATCTTGAAAG-AATTAAGACTGTTACGAGAATCGATGCTTGACATAATTAAGGGATG
** * * * *
574487 AACTTTGCTTTTAAGGAAAATAAGACAGAA-AATA-TTTCCACCCAAAAG-AAATTCATCAATAC
324 AACTTTAATTTTAAAGAAAATAGGGCA-AAGAATAGATT----CC---AGTAAA-T-AT-AATA-
* * * * * ** *
574549 CATTTATCCTAA-CGAAAAGAATGTGTTTTTAGTGCTTAATCACAAAATGAATGAGGATCATTAC
377 CATTTACCCAAATC-AAGAGAATGTGTTTATAGCGCCAAATCACAAAATGAATGAAGATCATTAC
* * *
574613 TAGAATCCATGTTTGTCTCATTTG
441 T--AACCCATGTTTGTCTCAGTTA
* * *** *
574637 AGGCACAAACTTAGACTTTAAAAAAATTGAAAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
* * ** * *
574702 AATTTCATTTATCCCAATGAGATA-ACTATGTTTACGGTGCCTAATCCTGAAAAGAATGAGG-AT
66 AATATCATGTATCCTTATGAGA-AGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATG-GGAAT
* *
574765 TAGTATGACTATTCAT
129 TAGCATGAGTATTCAT
574781 GTTTGTCCTA
Statistics
Matches: 886, Mismatches: 151, Indels: 69
0.80 0.14 0.06
Matches are distributed among these distances:
453 3 0.00
454 360 0.41
455 6 0.01
456 4 0.00
458 1 0.00
460 3 0.00
461 1 0.00
464 1 0.00
465 2 0.00
466 1 0.00
467 1 0.00
468 1 0.00
469 2 0.00
470 3 0.00
471 2 0.00
472 63 0.07
473 292 0.33
474 136 0.15
475 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (462 bp):
AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
AATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTA
GCATGAGTATTCATATTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAG
AAAACCTTTTCTTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
GTTCCTAATCTTGAAAGAATTAAGACTGTTACGAGAATCGATGCTTGACATAATTAAGGGATGAA
CTTTAATTTTAAAGAAAATAGGGCAAAGAATAGATTCCAGTAAATATAATACATTTACCCAAATC
AAGAGAATGTGTTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTAACCCATGTTTGTC
TCAGTTA
Found at i:576330 original size:19 final size:19
Alignment explanation
Indices: 576306--576349 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
576296 TTTATAAGAT
576306 AATTTA-CACACATATCAAA
1 AATTTATCACACATA-CAAA
*
576325 AATTTATTCGCACATACAAA
1 AATTTA-TCACACATACAAA
576345 AATTT
1 AATTT
576350 TTTTGCACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 9 0.41
21 7 0.32
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (19 bp):
AATTTATCACACATACAAA
Found at i:576346 original size:20 final size:20
Alignment explanation
Indices: 576314--576362 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
576304 ATAATTTACA
576314 CACATATCAAAAATTTATTCG
1 CACATA-CAAAAATTTATTCG
* *
576335 CACATACAAAAATTTTTTTG
1 CACATACAAAAATTTATTCG
576355 CACATACA
1 CACATACA
576363 TCTATTCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.33
Consensus pattern (20 bp):
CACATACAAAAATTTATTCG
Found at i:577510 original size:13 final size:13
Alignment explanation
Indices: 577492--577516 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
577482 ACTGAAGTAA
577492 TGTATCGATACAT
1 TGTATCGATACAT
577505 TGTATCGATACA
1 TGTATCGATACA
577517 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:580581 original size:15 final size:15
Alignment explanation
Indices: 580543--580581 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
580533 TAAAGAATAC
580543 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
580558 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
580573 AAAAAAAAA
1 AAAAAAAAA
580582 GCCAGCATTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:581358 original size:42 final size:42
Alignment explanation
Indices: 581306--581416 Score: 177
Period size: 42 Copynumber: 2.6 Consensus size: 42
581296 AAGAGAAAGA
*
581306 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
* * *
581348 AGATATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
*
581390 AGAGAGAGGAGGGATGACAGGAGGAGA
1 AGAGAGAGGAGGGATGATAGGAGGAGA
581417 AGAGAAGAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAAT
Found at i:581387 original size:21 final size:21
Alignment explanation
Indices: 581321--581387 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
581311 GAGGAGGGAT
*
581321 GATAGGAGGAGAGACAAGAGA
1 GATAGGAGGAGAGACAGGAGA
* * * *
581342 GATAGTA-GATATAGGAGG-GA
1 GATAGGAGGAGAGA-CAGGAGA
581362 TGATAGGAGGAGAGACAGGAGA
1 -GATAGGAGGAGAGACAGGAGA
581384 GATA
1 GATA
581388 ATAGAGAGAG
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
20 6 0.18
21 21 0.64
22 6 0.18
ACGTcount: A:0.43, C:0.03, G:0.42, T:0.12
Consensus pattern (21 bp):
GATAGGAGGAGAGACAGGAGA
Found at i:587877 original size:19 final size:20
Alignment explanation
Indices: 587837--587888 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
587827 TACAGGCCAA
**
587837 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
587857 TGTATCGATACAA-ACTTTG
1 TGTATCGATACAATACTTTG
587876 TGTATCGATACAA
1 TGTATCGATACAA
587889 GTTTGGATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:590067 original size:476 final size:472
Alignment explanation
Indices: 588264--590741 Score: 2615
Period size: 476 Copynumber: 5.2 Consensus size: 472
588254 ATCCTAACAC
* * * **
588264 TATTTAAAAGGCAAACTTTGATTCTTTGAAAAA-GAGTGGAAAGAAAACCTTTTCTTGTGAC-CA
1 TATTTAAAAGACAAACTTTGATTCTATCAAAAATG-GTGGAAAGAAAACCTTTTCTTACGACAC-
* *
588327 CAAAGCATCAATGTCTTGTATCCTAAA-AA-GGAATGCGTTCTTGGTTCCTAATCTTGAAAAGAA
64 CAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCGTT-TTGGTTCC-AATCTTGAAAGGAA
* * * * * ** * ** * *
588390 TGGACACTGTTACGAGAATAGACGCTTGTCATATTTAATGGTTGATTTTTTATTTTAAAGAAAAT
127 TGGAGACTGTTACGAGAATAAATGCTTGCCTTATTTAA-GACTAAACTTTGATTTTAAGGAAAAT
* * * * * **
588455 AAGG-GAAAGAAAAGA-TTTCGATG-AAACAGAAAATCATCAATATCATTTACCCTATTGAGGAG
191 -AGGACAAAGAAAATATTTTC-ATGCAAA-AGAAATTCATCAATATCATTTATCCTAATGAAAAG
* * *
588517 AATGTCTTCTTATAAG-GCCTAATCACAAAATGATTGAAGATCATTACTAGAATCCTTGTTTGTC
253 AATGT-GT-TTAT-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * ** *
588581 ACATTTGAGGCACGAACTCAGACTTT-ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTAAAACC
315 TCATTTGAGGCACGAACTTAGACTTTAAC-AAAATTGAAGGGAAGAAAGCCTTTCTTGCAAAACC
* * * * *
588645 AAATCATCAATATCATG-CATCCCT-ATGAGAAGACTAAGTTTTTGGTGCCTAATCTTGAAAAGA
379 AAAGCATCAAT-T-TTGTCAT-CCTAATGAGAATACTATGTTTATGGTGCCTAATCTTGAAAAGA
588708 ATAGGGATTAGTATGACTATTCAAGTTTATCT
441 ATAGGGATTAGTATGACTATTCAAGTTTATCT
** * * * * * **
588740 TATTTAGGAGATAAACTTTGATTCTA-CAAAAAACGGTAGAAAGAAAGCCTTTTCTTATGACATG
1 TATTTAAAAGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAACCTTTTCTTACGACACC
* * *
588804 AAAGCATCCATGTCATGTATCCTAAAGAAGGGATTGTGTTTTTGGTTTCCAATCTTGAAAGGAAT
65 AAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCG-TTTTGG-TTCCAATCTTGAAAGGAAT
* * ** * * *
588869 GGAAACTGTTACAAGAAGCAATGCTTGCCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAACA
128 GGAGACTGTTACGAGAATAAATGCTTGCCTTATTTAAGA-CTAAACTTTGATTTTAAGGAAAATA
* * *
588934 GGAGAAAGAAAATATTTTCATGCAAAAAAAATTCATCAATATCATTTATCCTAATGAAAAGAATA
192 GGACAAAGAAAATATTTTCATGCAAAAGAAATTCATCAATATCATTTATCCTAATGAAAAGAATG
*
588999 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCACATTTG
257 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * *
589064 AGGCACGAACTTAGACTTT-ACAAAATTTAGAGCGAAGAAAGCCTTTCTTG------CAAAGCGT
322 AGGCACGAACTTAGACTTTAACAAAATTGA-AGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT
* * * * * * **
589122 CAATATCATGT-ATCCTTATGAGAATACTAAGTTTATGGTGCCCAATCCTAAAAAGAATAAAGAT
386 CAAT-T-TTGTCATCCTAATGAGAATACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGAT
*
589186 TAGTATGACTATTCAAGTTTGTCT
449 TAGTATGACTATTCAAGTTTATCT
* * * ** *
589210 TATTTAAGAGACAAAGTTTGATTCTATAAAAAATGGTGGAAAGAAAAGATTTTCTTACGACATCA
1 TATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTACGACACCA
* * * *
589275 AAGCATCCATGTCATATATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTTGAAAGGAATG
66 AAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCG-TTTTGG-TTCCAATCTTGAAAGGAATG
*
589340 GAG-CTGTTATGAGAA-ACAATGCTTGCCTTATTTAAG-CGATAAACTTTGATTTTAAGGAAAAT
129 GAGACTGTTACGAGAATA-AATGCTTGCCTTATTTAAGAC--TAAACTTTGATTTTAAGGAAAAT
* ** **
589402 AGGGCAAAGAAAAT-TTTTCTATGCAAAAGAACGTCATCAATATCATTTATATTAATGAAAAGAA
191 AGGACAAAGAAAATATTTTC-ATGCAAAAGAAATTCATCAATATCATTTATCCTAATGAAAAGAA
* *
589466 TGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATT
255 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * **
589531 TAAGGCATGAACTTAGACTTTAAAAAAAATTGAAGGGAAAAAAGCCTTTCGTGGGAAACCAAAGC
320 TGAGGCACGAACTTAGACTTT-AACAAAATTGAAGGGAAGAAAGCCTTTCTTGCAAAACCAAAGC
* * *
589596 ATC-ATTTTGTCAATCCTAATGAGATTACTATCTTTATGGTGCCTAATCTTGAAAAGAATGGGGA
384 ATCAATTTTGTC-ATCCTAATGAGAATACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGA
* * *
589660 TTAGTATAACTATTCCAGTTTGTCT
448 TTAGTATGACTATTCAAGTTTATCT
* * *
589685 TATTTAAAAGACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACACCA
1 TATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTACGACACCA
* * * ** * * *
589750 AAGCATCTATGTCATATATCCCAATTAAGAGAATGTGATTTTGGTTCTCAATCTTGAAAGGGATG
66 AAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCG-TTTTGGTTC-CAATCTTGAAAGGAATG
* * * *
589815 GAGACTGTTACGAGAATAAACGCTTGCCTTATTTAAGCACTAAACTTTCACTTTAAGGAAAATTG
129 GAGACTGTTACGAGAATAAATGCTTGCCTTATTTAAG-ACTAAACTTTGATTTTAAGGAAAATAG
* *
589880 GACAAAGAAAATATTTTCTTGCAAAAGAAATTCATCAATATCATTTATCCTAACT-AAAAGATTG
193 GACAAAGAAAATATTTTCATGCAAAAGAAATTCATCAATATCATTTATCCTAA-TGAAAAGAATG
* ** *
589944 TGTTTGTAGTGCCTAATCACAAAACAAATGAAGATAAATTACTAGAATCCATGTTTGTCTCATTT
257 TGTTTATAGTGCCTAATCACAAAATGAATGAAGAT-CATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
590009 GAGGCATGGACTTACACTTTAACAAAATTGAAGGGAAGAAAACCTTTCTTGCGAAACCAAAGCAT
321 GAGGCACGAACTTAGACTTTAACAAAATTGAAGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT
* * * *
590074 CAATTTTGTCTATCCTAATGAGATTACTGTGTTTATGGTGCCTAAT-TCTGGAAAGAATGGGGAT
386 CAATTTTGTC-ATCCTAATGAGAATACTATGTTTATGGTGCCTAATCT-TGAAAAGAATAGGGAT
* *
590138 TAGTATGGCTATTCATGTTTATCT
449 TAGTATGACTATTCAAGTTTATCT
* * * * * *
590162 TATTTAAAAGGCAAACTTTGATTTTTTCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACCCCA
1 TATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTACGACACCA
* * * * *
590227 AAGCATCAATGTCTTGTATCTTAAAGAGGGGAATGCGTTCTTGGTTCCAAATCTTGAAAAGAAAG
66 AAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCGTT-TTGGTTCC-AATCTTGAAAGGAATG
* * * *
590292 GAGACTGTTACAAGAATCAATGCTTACCTTATTTAAGGGAC-GAACTTTGATTTTAAGGAAAATA
129 GAGACTGTTACGAGAATAAATGCTTGCCTTATTTAA--GACTAAACTTTGATTTTAAGGAAAATA
* * * * * * *** *
590356 GGGCAAATAAAAGATTTCCATGCAAAATAAATTCATCAATATCATGTATCCTAATGAGGTGAATA
192 GGACAAAGAAAATATTTTCATGCAAAAGAAATTCATCAATATCATTTATCCTAATGAAAAGAATG
* * * * *
590421 TGTTTATAATGCCTAATGACAAAATGAATGAAGATCATTACCAAAATCCATGTTTGTCTTATTTG
257 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * *
590486 AGGCACGAACTTAGACATTATA-AAAATTGGATGGAAGAAAGCCTTTCCTGTAAAACCAAAGCAT
322 AGGCACGAACTTAGACTTTA-ACAAAATTGAAGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT
** * ** *
590550 CAACGTTGTCTATCCTAGTGAGAAGGCTATGTTTATGATGCCTAATCTTGAAAAGAAT-GGGATT
386 CAATTTTGTC-ATCCTAATGAGAATACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATT
**
590614 AGTATGACTATTCTTGTTTATCT
450 AGTATGACTATTCAAGTTTATCT
* * * ** * * *
590637 TATTTAAGAGACAAGCTTCGATTCTATCAAAAAT-GTTTAACAGAAAAGCTATTCTTACGACTCC
1 TATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAA-AGAAAACCTTTTCTTACGACACC
* * * *
590701 AAAGCATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTT
65 AAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCGTTT
590742 GTAGTGCCTA
Statistics
Matches: 1698, Mismatches: 256, Indels: 98
0.83 0.12 0.05
Matches are distributed among these distances:
468 5 0.00
469 184 0.11
470 212 0.12
471 8 0.00
473 3 0.00
474 8 0.00
475 294 0.17
476 478 0.28
477 373 0.22
478 119 0.07
479 14 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (472 bp):
TATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTACGACACCA
AAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCGTTTTGGTTCCAATCTTGAAAGGAATGGA
GACTGTTACGAGAATAAATGCTTGCCTTATTTAAGACTAAACTTTGATTTTAAGGAAAATAGGAC
AAAGAAAATATTTTCATGCAAAAGAAATTCATCAATATCATTTATCCTAATGAAAAGAATGTGTT
TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTAACAAAATTGAAGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATT
TTGTCATCCTAATGAGAATACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATG
ACTATTCAAGTTTATCT
Found at i:590936 original size:316 final size:317
Alignment explanation
Indices: 590397--591058 Score: 831
Period size: 316 Copynumber: 2.1 Consensus size: 317
590387 TTCATCAATA
* *
590397 TCATGTATCCTAATG-AGGTGAATATGTTTATAATGCCTAATGACAAAATGAATGAAGATCATTA
1 TCATGTATCCTAATGAAGG-GAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTA
* * ** * *
590461 CCAAAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACATTATAAAAATTGGATGGAAGAAA
65 CCAAAATCAATGTTTCTCCCATTTGAGGCACGAACTTAGACATTACAAAAATTGGATGGAAAAAA
* *
590526 GCCTTTCCTGTAAAACCAAAGCATCAACGTTGTCTATCCTAGTGAGAAGGCTATGTTTATGATGC
130 GCCTTTCCTGTAAAACCAAAGCATCAACGTTGTCTATCCTAATGAGAAGACTATGTTTATGATGC
* *
590591 CTAATCTTGAAAAGAATGGGATTAGTATGACTATTCTT-GTTTATCTTATTTAAGAGACAAGCTT
195 CTAATCTTGAAAAGAATGGGATGAGTATGACTATTCTTAGTTTATCTTATTTAAGAGACAAACTT
* ** *
590655 CGATTCTATCAAAAAT-GTTTAACAGAAAAGC-TATTCTTACGACTCCAAAGCAT-CAGTG
260 CGATTATATCAAAAATGGTGGAA-AGAAAA-CATATTCTTACGACACCAAAGCATCCA-TG
* * *
590713 TCATGTATCCTAATGAAAGGAATGTGTTTGTAGTGCCTAATCACAAAAT-AATTGAAGATCATTA
1 TCATGTATCCTAATGAAGGGAATGTGTTTATAATGCCTAATCACAAAATGAA-TGAAGATCATTA
* * * *
590777 CTAGAATCAATGTTTCTCCCATTTGAGGCACGAACTTAGACTTTACAAAACTTGG-TGGAAAAAA
65 CCAAAATCAATGTTTCTCCCATTTGAGGCACGAACTTAGACATTACAAAAATTGGATGGAAAAAA
* * * * *
590841 GCCTTTCTTGTGAAAA-CAAAGCATCAA-TTTCGTCTATCCTAATGAGATGACTTTTTTTAT-AG
130 GCCTTTCCTGT-AAAACCAAAGCATCAACGTT-GTCTATCCTAATGAGAAGACTATGTTTATGA-
* * * *
590903 TGCCTAATCTTGAAAGGAATAGGGATGAGTATGACTATTTTTAGTTTGTCTTATTTAAGAGATAA
192 TGCCTAATCTTGAAAAGAAT-GGGATGAGTATGACTATTCTTAGTTTATCTTATTTAAGAGACAA
* * * *
590968 ACTTTGATTATATCTAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCCATG
256 ACTTCGATTATATCAAAAATGGTGGAAAGAAAACATATTCTTACGACACCAAAGCATCCATG
* *
591030 CCATGTATCCTAATGAAGGGATTGTGTTT
1 TCATGTATCCTAATGAAGGGAATGTGTTT
591059 TTGGTTCCCA
Statistics
Matches: 297, Mismatches: 39, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
314 3 0.01
315 74 0.25
316 123 0.41
317 91 0.31
318 6 0.02
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (317 bp):
TCATGTATCCTAATGAAGGGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTAC
CAAAATCAATGTTTCTCCCATTTGAGGCACGAACTTAGACATTACAAAAATTGGATGGAAAAAAG
CCTTTCCTGTAAAACCAAAGCATCAACGTTGTCTATCCTAATGAGAAGACTATGTTTATGATGCC
TAATCTTGAAAAGAATGGGATGAGTATGACTATTCTTAGTTTATCTTATTTAAGAGACAAACTTC
GATTATATCAAAAATGGTGGAAAGAAAACATATTCTTACGACACCAAAGCATCCATG
Found at i:593068 original size:67 final size:67
Alignment explanation
Indices: 592960--593095 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
592950 TAATAAGGTA
592960 ATTCACACATTCTCTCCTTTATCTCCCTCGTTTATTAATAAATCTCCCCCTTAATCAAGTAATTC
1 ATTCACACATTCTCTCCTTTATCTCCCTCGTTTATTAATAAATCTCCCCCTTAATCAAGTAATTC
593025 AT
66 AT
* *
593027 ATTCACACATTGTCTCCTTTATCTCCTTCGTTTATTAATAAATCTCCCCCTTAATCAAGTAATTC
1 ATTCACACATTCTCTCCTTTATCTCCCTCGTTTATTAATAAATCTCCCCCTTAATCAAGTAATTC
593092 AT
66 AT
593094 AT
1 AT
593096 CAAAAATTTA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.27, C:0.28, G:0.04, T:0.41
Consensus pattern (67 bp):
ATTCACACATTCTCTCCTTTATCTCCCTCGTTTATTAATAAATCTCCCCCTTAATCAAGTAATTC
AT
Found at i:594914 original size:13 final size:13
Alignment explanation
Indices: 594896--594934 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
594886 ATAATCACCC
*
594896 TGTATCGATACAT
1 TGTATCGATACAA
594909 TGTATCGATACAA
1 TGTATCGATACAA
594922 TGTATCGATACAA
1 TGTATCGATACAA
594935 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:597033 original size:15 final size:15
Alignment explanation
Indices: 597013--597043 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
597003 ATTTCGTTTG
*
597013 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
597028 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
597043 G
1 G
597044 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:598876 original size:21 final size:21
Alignment explanation
Indices: 598847--598891 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
598837 AAGTTTTCAT
*
598847 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
598867 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
598889 TTT
1 TTT
598892 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:601236 original size:216 final size:216
Alignment explanation
Indices: 600857--601293 Score: 838
Period size: 216 Copynumber: 2.0 Consensus size: 216
600847 TCTTTGAATG
*
600857 CTAGGTGTTTCTTGCTTGATTCTTCTTGCCTCTTTTTTTTGTTTTGCTGCTGGAAGCTCTTATTT
1 CTAGCTGTTTCTTGCTTGATTCTTCTTGCCTCTTTTTTTTGTTTTGCTGCTGGAAGCTCTTATTT
*
600922 ATAGGCTTCAATGTTGTTATAGCCGTTGGAGTTTGATTAATGGAGTTTCTAGCCGTTATTGACTC
66 ATAGGCTTCAATGTTGTTATAGCCGTTGGAGTTTGATTAATGGAGTTTCTAGCCGTTATTAACTC
*
600987 GTTGGAGCTTGTTTTAATGATTTCCCGTGTAAATGTATCGATACAATTTTTGATGTATCGATACA
131 GTTGGAGCTTATTTTAATGATTTCCCGTGTAAATGTATCGATACAATTTTTGATGTATCGATACA
601052 TATTTGAAAATATAGCCGTTT
196 TATTTGAAAATATAGCCGTTT
601073 CTAGCTGTTTCTTGCTTGATTCTTCTTGCCTCTTTTTTTTGTTTTGCTGCTGGAAGCTCTTATTT
1 CTAGCTGTTTCTTGCTTGATTCTTCTTGCCTCTTTTTTTTGTTTTGCTGCTGGAAGCTCTTATTT
*
601138 ATAGGCTTCAATGTTGTTGTAGCCGTTGGAGTTTGATTAATGGAGTTTCTAGCCGTTATTAACTC
66 ATAGGCTTCAATGTTGTTATAGCCGTTGGAGTTTGATTAATGGAGTTTCTAGCCGTTATTAACTC
601203 GTTGGAGCTTATTTTAATGATTTCCCGTGTAAATGTATCGATACAATTTTTGATGTATCGATACA
131 GTTGGAGCTTATTTTAATGATTTCCCGTGTAAATGTATCGATACAATTTTTGATGTATCGATACA
601268 TATTTGAAAATATAGCCGTTT
196 TATTTGAAAATATAGCCGTTT
601289 CTAGC
1 CTAGC
601294 CGTTACAAGC
Statistics
Matches: 217, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
216 217 1.00
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.45
Consensus pattern (216 bp):
CTAGCTGTTTCTTGCTTGATTCTTCTTGCCTCTTTTTTTTGTTTTGCTGCTGGAAGCTCTTATTT
ATAGGCTTCAATGTTGTTATAGCCGTTGGAGTTTGATTAATGGAGTTTCTAGCCGTTATTAACTC
GTTGGAGCTTATTTTAATGATTTCCCGTGTAAATGTATCGATACAATTTTTGATGTATCGATACA
TATTTGAAAATATAGCCGTTT
Found at i:601345 original size:13 final size:13
Alignment explanation
Indices: 601327--601352 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
601317 CAATTTTTTG
601327 TGTATCGATACAT
1 TGTATCGATACAT
601340 TGTATCGATACAT
1 TGTATCGATACAT
601353 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:603964 original size:444 final size:444
Alignment explanation
Indices: 603160--604405 Score: 1806
Period size: 444 Copynumber: 2.8 Consensus size: 444
603150 AAAAAATGTG
* * *
603160 TTTATAGTGCCTAATCACAAAATGAATGAAA-ATCATTACTAGAATCCATATTTGTCTCATTTAA
1 TTTATAGTGCCTAATCACAAAATG-ATTAAAGATCATTACTAGAATCCTTATTTGTCTCATTTGA
* * ** ** **
603224 GGCATGAACTTAGACTTTAAAAAAATTGAAGGGAAGAAAGCCTTTCTTGA-GAAATGAAAGCATC
65 GGCACGAACTCAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTT-ACGAAACCAAAGCATC
** ** * ** *
603288 --AATTTTGTCAATCCTAATGAGATTAA-TGTGTTTATGGTGCCTAATCCTAGAAA-GAATAGGG
129 AAAATCATGT--ATCCTTGTGAGA-AAACTAAGTTTATGGTGCCTAATCCTA-AAATGAATGGGG
*
603349 ATTAGTATAACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCTTTCAAAAACGGTGG
190 ATTAGTATGACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCTTTCAAAAACGGTGG
*
603414 AAAGAAAACCTTTTCTTACGACCCCAAAGCATCAATGCCTTGTATCTTAATGAGGGGAATGCGTT
255 AAAGAAAACCTTTTCTTACGACCCCAAAGCATCAATGTCTTGTATCTTAATGAGGGGAATGCGTT
* *
603479 CTTGGTTCCAAATCTTGAAAAGAATGGAGACTATTATGAGAATCAAGGCTTGTGAATAGGGCAAA
320 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCAAGGCTTGTCAATAGGGCAAA
* *
603544 GAAAAGATTTTCATGTAGTAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGCC
385 GAAAAGATTTTCATGCAATAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGCC
*
603604 TTTATAGTGGCTAATCACAAAATGATTAAAGATCATTACTAGAATCCTTATTTGTCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGATTAAAGATCATTACTAGAATCCTTATTTGTCTCATTTGAG
* * *
603669 GCACAAACTCA-AGCTTTACGAAAATTGGTGGGAAAAAAACCTTTCTTACGAAACCAAAGCATCA
66 GCACGAACTCAGA-CTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
603733 AAATCATGTATCCTTGTGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAG
130 AAATCATGTATCCTTGTGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAG
*
603798 TATGACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCTTTCAAAAATGGTGGAAAGA
195 TATGACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCTTTCAAAAACGGTGGAAAGA
* * *
603863 AAACCTTTTCTTGCGACCCCAAAGCATCATTGTCTTATATCTTAATGAGGGGAATGCGTTCTTGG
260 AAACCTTTTCTTACGACCCCAAAGCATCAATGTCTTGTATCTTAATGAGGGGAATGCGTTCTTGG
603928 TTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCAAGGCTTGTCAATAGGGCAAAGAAAA
325 TTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCAAGGCTTGTCAATAGGGCAAAGAAAA
603993 GATTTTCATGCAATAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGCC
390 GATTTTCATGCAATAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGCC
* * * *
604048 TTTATAGTGCCTAATCACAAAATGATTGAGGATCATTACTACAATCCTTGTTTGTCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGATTAAAGATCATTACTAGAATCCTTATTTGTCTCATTTGAG
**
604113 GCACGAACTCAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGTGTCAA
66 GCACGAACTCAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAA
* *
604178 AATCATGTATCCCTGTGAGAAAACTAAGTTTATGGTGCGTAATCCTAAAATGAATGGGGATTAGT
131 AATCATGTATCCTTGTGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAGT
* * * **
604243 ATGACTATTCATGTTTGTCTTATTTAGAAGGTAAACTTTGATTCTATT-AAAAACAATGGAAAGA
196 ATGACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCT-TTCAAAAACGGTGGAAAGA
* * ** * * * * * * * *
604307 AAACCTATTATTACGAATCGAAAACATCAATGTCATGTACCTTAATGAAGGGCATGTGTTTTTGG
260 AAACCTTTTCTTACGACCCCAAAGCATCAATGTCTTGTATCTTAATGAGGGGAATGCGTTCTTGG
* * * *
604372 TTCCCAATTTTGAAAAGAAAGGAGATTGTTATGA
325 TTCCCAATCTTGAAAAGAATGGAGACTATTATGA
604406 CAATTAGTGC
Statistics
Matches: 723, Mismatches: 70, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
443 12 0.02
444 702 0.97
445 3 0.00
446 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (444 bp):
TTTATAGTGCCTAATCACAAAATGATTAAAGATCATTACTAGAATCCTTATTTGTCTCATTTGAG
GCACGAACTCAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAA
AATCATGTATCCTTGTGAGAAAACTAAGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAGT
ATGACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCTTTCAAAAACGGTGGAAAGAA
AACCTTTTCTTACGACCCCAAAGCATCAATGTCTTGTATCTTAATGAGGGGAATGCGTTCTTGGT
TCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCAAGGCTTGTCAATAGGGCAAAGAAAAG
ATTTTCATGCAATAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGCC
Found at i:605018 original size:316 final size:316
Alignment explanation
Indices: 604530--605157 Score: 748
Period size: 316 Copynumber: 2.0 Consensus size: 316
604520 ATGTTTACAA
* * * * *
604530 TGCCTAATGACAAAATGAATGAAGATATTACTAGAATCCATGTTTGTCTTATTTGAGGCACAAAC
1 TGCCTAATCACAAAATGAATGAAGATATTACTAGAATCAATGTTTCTCTCATTTGAGGAACAAAC
* * * * * *
604595 TTAGACATTATAAAAATTGGATGGAAGAAAGCCTTTCCTTCGAAACCAAGGCATCAATTTTGTCC
66 TTAGACATTAGAAAAATTGGATGGAAAAAAGCCTTTCCTTCAAAAACAAAGCATCAATTTCGTCC
* * *
604660 ATCCTAGCGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAAT-GGGATTAGTATGGCTAT
131 ATCCTAACGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAATAGGGATTAGTATGACGAT
* * * * * *
604724 TCT-TGTTTATCATATTTAAGTGACATG-CTTTGATTCTATCAAAAATGTTTGACAGAAAAGC-T
196 T-TAAGTTTATCATATTTAAGAGACA-GACTTTGATTATATCAAAAATGGTGGAAAGAAAA-CAT
* * *
604786 ATTCTTGCGACTCCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTGTAG
258 ATTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATAAAGAGAATGTGTTTGTAG
* **
604845 TGCCTAATCCCAAAAT-AATTGAAGATCATTACTAGAATCAATGTTTCTCTCATTTGAGGAATGA
1 TGCCTAATCACAAAATGAA-TGAAGAT-ATTACTAGAATCAATGTTTCTCTCATTTGAGGAACAA
* * * * *
604909 ACTTAGACTTTAGAAAAGTTAG-TAGGAAAAAAG-CTTTTCTTATAAAAACAAAGCATCAATTTC
64 ACTTAGACATTAGAAAAATTGGAT-GGAAAAAAGCCTTTCCTT-CAAAAACAAAGCATCAATTTC
* * * * *
604972 GTCTATCCTAATGAGATGACTATTTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGA
127 GTCCATCCTAACGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAATAGGGATTAGTATGA
* * *
605037 CGATTTAAGTTTGTCTTATTTAAGAGACAGACTTTGATTATATCTAAAATGGTGGAAAGAAAACA
192 CGATTTAAGTTTATCATATTTAAGAGACAGACTTTGATTATATCAAAAATGGTGGAAAGAAAACA
* * * * *
605102 TTTTCTTGTGACACCAAAGCATCCATGCCATGTATCCTAATAAAGGGATTGTGTTT
257 TATTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATAAAGAGAATGTGTTT
605158 TTGGTTCCTA
Statistics
Matches: 261, Mismatches: 44, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
314 2 0.01
315 29 0.11
316 121 0.46
317 109 0.42
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (316 bp):
TGCCTAATCACAAAATGAATGAAGATATTACTAGAATCAATGTTTCTCTCATTTGAGGAACAAAC
TTAGACATTAGAAAAATTGGATGGAAAAAAGCCTTTCCTTCAAAAACAAAGCATCAATTTCGTCC
ATCCTAACGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAATAGGGATTAGTATGACGAT
TTAAGTTTATCATATTTAAGAGACAGACTTTGATTATATCAAAAATGGTGGAAAGAAAACATATT
CTTGCGACACCAAAGCATCAATGCCATGTATCCTAATAAAGAGAATGTGTTTGTAG
Found at i:605579 original size:475 final size:471
Alignment explanation
Indices: 604812--606493 Score: 1709
Period size: 475 Copynumber: 3.5 Consensus size: 471
604802 AGCATCAATG
* * * * *
604812 TCATGTATCCTAATGAAGAGAATGTGTTTGTAGTGCCTAATCCCAAAATAATTGAAGATCATTAC
1 TCATTTATCCTAA-GAAGAGAATGTCTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTAC
* * * * * * *
604877 TAGAATCAATGTTTCTCTCATTTGAGGAATGAACTTAGACTTTAGAAAAGTTAGTA-GGAAAAAA
65 TAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACATTACAAAAATT-GAAGGGAAAAAA
* * *
604941 GCTTTTCTTATAAAAACAAAGCATCAATTTCGTCTATCCTAATGAGATGACTAT-TTTTATGGTG
129 GCTTTTCTTATAAAACCAAAGCATCAATTTCGTCTATCCT-ATGAGAAGACTATAGTTTATGGTG
* * * *
605005 CCTAATCTTGAAAAGAATAGGGATTAGTATGACGATTTAAGTTTGTCTTATTTAAGAGACAGACT
193 CCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * * * *
605070 TTGATTATATCTAAAATGGTGGAAAGAAAACATTTTCTTGTGACACCAAAGCATCCATGCCATGT
258 TTGATT-TTTCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCCATGTCATGT
* * *
605135 ATCCTAATAAAGGGATTGTGTTTTTGGTTCCTAATCTTGAAAGGAATGGATACTGTTACGACAAT
322 ATCCTAATAAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAAT
** * * *
605200 CAACGCTTGCCTTGTTTAGCCGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
387 TGATGCTTGCCAT-TTTAG--GGATAAA-TTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* *
605264 CCATTCAAAAGAAATTCATTAATA
448 CCATACAAAAGAAAATCATTAATA
* * * * * * *
605288 TCATTTATCGTTACGAAAAGAATGTGTTTATAGTGCCTAATCATAAAATGAGTAAAGATCATTAC
1 TCATTTATC-CTAAGAAGAGAATGTCTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTAC
* * * *
605353 GAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACATTA-AAAAATTGAAGGGAAGAAAG
65 TAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGAAGGGAAAAAAG
* * * * * *
605417 CCTTTCTTATCAAACCAAAGCATCAATTTTGTCTATCATAATGAGATGACTATA-TTTACGGTGC
130 CTTTTCTTATAAAACCAAAGCATCAATTTCGTCTATCCT-ATGAGAAGACTATAGTTTATGGTGC
* * * * * *
605481 CTAACCCTGAAAAGAATGGGGATTAGTATGACTATCCAAGTTTATCTTATTTAAAAGGCAAACTT
194 CTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACTT
* * **
605546 TGATTCTTTCAAAAACGGTGGAGAGAAAACATTTTCTTGCGACCCCAAAGCATTAATGTC-TAGT
259 TGATT-TTTCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCCATGTCAT-GT
* ** * ** * * * * *
605610 ATCTTAACGAAGGGAATACGTTCTTGGTTCCCAAACATGAAAAGAAGGGAGACTGTT-CTGAGAA
322 ATCCTAATAAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTAC-GAGAA
* * * *
605674 TTGATGCTTGCAATATTTAAGGGACAAATTTTAATTTTAAAG-AAATAGAGCAAAGAAAAGATTT
386 TTGATGCTTGCCAT-TTT-AGGGATAAA-TTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * *
605738 TCATACAACAGAAAATCATCAATA
448 CCATACAAAAGAAAATCATTAATA
* * *
605762 TCATTTATCCTAATAAGGAGAATATCTTTATAGTG-CTAATCACAAAATGATTGAAGATCATTGC
1 TCATTTATCCTAAGAA-GAGAATGTCTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTAC
** * * ** *
605826 TAGAATCTTTGTTTCTCTCATTCGAGGCATGAACTTAGA-ATTTACAAAAATTGGTGGGAAGAAA
65 TAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACA-TTACAAAAATTGAAGGGAAAAAA
* * * * * * * * * *
605890 GCTTTTCCTAGAAAACCAAAGC-GCTAATATCATGTATCCCTATGAAAAGTC-AAAGTTTATGAT
129 GCTTTTCTTATAAAACCAAAGCATC-AATTTCGTCTAT-CCTATGAGAAGACTATAGTTTATGGT
* * * *
605953 GCCTAATCCAGAGAAGAATACGGATTAGTATGACTATTCAAGTTTGTCCTATTTAAGAGACAAAC
192 GCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAAC
* * ** *
606018 TTTTATTTTATCAAAAACAGTGGAAAGAAAACCCTTTCTTGCGACACCAGAGCATCCATGTCATG
257 TTTGATTTT-TCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCCATGTCATG
* * * **
606083 TATCCTAATTAAGGGATTGTGTTTTTTGTTCCCAATCTTGAAAGGAATGGAGACTCTTATAAGAA
321 TATCCTAATAAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAA
* * * * *
606148 TTGATTCTTGTCACATTTAAGGGATGAATTATTATTTTAAGGAAAATAGGGCAAGGAAAAGATTT
386 TTGATGCTTG-C-CATTTTAGGGATAAATT-TAATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* *
606213 CCATGCAATAGAAAATCATTAATA
448 CCATACAAAAGAAAATCATTAATA
* * * * *
606237 TCATCTATCCCAATGAAGAGAAAGTCCTTATAGTGCCTAATCACAAAATGATTGAACATCATTAC
1 TCATTTATCCTAA-GAAGAGAATGTCTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTAC
* * * * * * * * **
606302 TAGAATCCTTGTTTGTTTCATTTAAGGCACAAACTTAGACTTTGCAAAGATTGCTGGGAAAAAAG
65 TAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGAAGGGAAAAAAG
* ** * * *
606367 CATTTCTTCCAAAACCAAAGCATC-ATTATCATGTATCCCCTATGAGAAGACTA-AGTTTATAGT
130 CTTTTCTTATAAAACCAAAGCATCAATT-TCGTCTAT--CCTATGAGAAGACTATAGTTTATGGT
* * * *
606430 GCCTAATGCTGAAAAGAATAGGGATTAGTATGACTATTCAAGTTTTTCCTAGTTAAGAGACAAA
192 GCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAA
606494 GAAAACCTTT
Statistics
Matches: 985, Mismatches: 194, Indels: 53
0.80 0.16 0.04
Matches are distributed among these distances:
472 1 0.00
473 71 0.07
474 306 0.31
475 326 0.33
476 199 0.20
477 81 0.08
478 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (471 bp):
TCATTTATCCTAAGAAGAGAATGTCTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACT
AGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGAAGGGAAAAAAGC
TTTTCTTATAAAACCAAAGCATCAATTTCGTCTATCCTATGAGAAGACTATAGTTTATGGTGCCT
AATCCTGAAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTG
ATTTTTCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCCATGTCATGTATCC
TAATAAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATTGAT
GCTTGCCATTTTAGGGATAAATTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATACAA
AAGAAAATCATTAATA
Found at i:607329 original size:159 final size:159
Alignment explanation
Indices: 606660--607330 Score: 406
Period size: 158 Copynumber: 4.2 Consensus size: 159
606650 GAAGAAAGCT
* * * * *
606660 TTTCTTGCGAAACCAAAGCATCAATTTCATC-AATCGTAATGAGATAACTATGTTTGTGGTGCCT
1 TTTCTTGCGAAACCAAAGCATCAATGTCA-CGTATCCTAAAGAGATAACTATGTTTATGGTGCCT
* * * *
606724 AATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTGTTTAAGAAACAAACTTTG
65 AATCTTGAAAAGAATGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
606789 ATTCTATCAAATATGGTGGAAAGAAAACCT
130 ATTCTATCAAAAATGGTGGAAAGAAAACCA
* * * * * ** * * *
606819 TTTCTTACGACACCGAAGCATGAATGTCATGTATCCTTACAA-AGGGAA-TGTGTTCATGGTTCC
1 TTTCTTGCGAAACCAAAGCATCAATGTCACGTATCC-TA-AAGAGATAACTATGTTTATGGTGCC
* * * * * * *
606882 CAATCTTGAAAAGAAT-GGAGACTATTATGAG-AATCAT-TGTGTCATATTT-AGATGACAAATT
64 TAATCTTGAAAAGAATGGGA-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GACAAA-C
* ** ** * * *
606943 TTTGTTTGAAGGAAAATTGG-GCAAAG-AAA-GA
126 TTTGATTCTATCAAAAATGGTGGAAAGAAAACCA
* * ** * * ** * * * * * * *
606974 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGA-AAAGATTGTGTTTATAGTTCC
1 TTT-CTTGCGAAACCAAAGCATCAATGTCACGTATCCTAAAGAGATA-ACTATGTTTATGGTGCC
** * * * * * * * *
607038 TAATC-ACAAAATGAATGAGG-ATCACTGCT-AGAATCCATGTTTGTCTCATTTGAG-GCACGAA
64 TAATCTTGAAAA-GAATG-GGAATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAA
* * ** * *
607099 CTTAGACTT-TA-AAAAAATTGAAGGGAA-AAAAGCA
125 CTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAACCA
* * ** * *
607133 TTTCTTGCCAAACCAAAGCATCAATTTTGCCTATCCTAAAGAGATAACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATGTCACGTATCCTAAAGAGATAACTATGTTTATGGTGCCTA
607198 ATCTTGAAAAGAATGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
66 ATCTTGAAAAGAATGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
607263 TTCTATCAAAAATGGTGGAAAGAAAACCA
131 TTCTATCAAAAATGGTGGAAAGAAAACCA
* * *
607292 TTTCTTGCTACACCAAAGCATCCATGTCACGTATCCTAA
1 TTTCTTGCGAAACCAAAGCATCAATGTCACGTATCCTAA
607331 TAAAGGGATC
Statistics
Matches: 364, Mismatches: 117, Indels: 62
0.67 0.22 0.11
Matches are distributed among these distances:
154 2 0.01
155 11 0.03
156 57 0.16
157 36 0.10
158 134 0.37
159 117 0.32
160 6 0.02
161 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (159 bp):
TTTCTTGCGAAACCAAAGCATCAATGTCACGTATCCTAAAGAGATAACTATGTTTATGGTGCCTA
ATCTTGAAAAGAATGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCTATCAAAAATGGTGGAAAGAAAACCA
Found at i:607686 original size:476 final size:474
Alignment explanation
Indices: 606490--611173 Score: 5181
Period size: 475 Copynumber: 9.9 Consensus size: 474
606480 AGTTAAGAGA
** *
606490 CAAAGAAAACCTTTTCA-GACAAAAAAAATTCATCAATATCATTTATCCTAATGAAAGGAATGTG
1 CAAAGAAAATATTTTCATG-CAAAAAAAA-TCATCAATATCATTTATCCTAATGAAAAGAATGTG
* *
606554 TTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAAACCATGTTTGTCTCATTTGAG
64 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
** * * * *
606619 ATACAAACTTAGACTTTAAAAAAATTGAAGGGAAGAAAGCTTTTCTTGCGAAACCAAAGCATCAA
129 GCACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * * * *
606684 TTTCATCAATCGTAATGAGATAACTATGTTTGTGGTGCCTAATCTTGAAAAGAATGGGGATTAGT
194 TTTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * *
606749 ATGACTATTCATGTTTGTCTTGTTTAAGAAACAAACTTTGATTCTATCAAATATGGTGGAAAGAA
259 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * *
606814 AACCTTTTCTTACGACACCGAAGCATGAATGTCATGTATCCTTACAAAGGGAATGTGTTCATGGT
324 AACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGGT
* * * **
606879 TCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATC-AT--TGTGTCATATTTAGATGACAAA
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT-TGTCATATTTA-AGGATGAA
* *
606941 TTTTTG-TTTGAAGGAAAATTGGG
452 -TTTTGATTTTAAGGAAAATAGGG
* * * *
606964 CAAAG-AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAAAAGATTGTGT
1 CAAAGAAAATATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGT
* * * *
607028 TTATAGTTCCTAATCACAAAATGAATGAGGATCACTGCTAGAATCCATGTTTGTCTCATTTGAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * *
607093 CACGAACTTAGACTTTAAAAAAATTGAAGGGAAAAAAGCATTTCTTGCCAAACCAAAGCATCAAT
130 CACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
*** * * * * *
607158 TTTGCCTATCCTAAAGAGATAACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGAATTAGTA
195 TTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* *
607223 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
260 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * * * *
607288 ACCATTTCTTGCTACACCAAAGCATCCATGTCACGTATCCTAATAAAGGG-ATCGTGTTTTTGGT
325 ACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAAT-GTGTTCTTGGT
* * * * * * * * * *
607352 TTCCAATCTTGAAAAGAATGGAGACTGCTACAACAATCAACGCTTGCCTTATTTAAGCGATAAAC
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAG-GATGAAT
* * * *
607417 GTTGATTTTAAGGAAAACAAGA
453 TTTGATTTTAAGGAAAATAGGG
*
607439 CAAAGAAAATATTTTCATGCAAAAAAAATTCATCAATATCTTTTATCCTAATGAAAAGAATGTGT
1 CAAAGAAAATATTTTCATGCAAAAAAAA-TCATCAATATCATTTATCCTAATGAAAAGAATGTGT
* * *
607504 TTATAATGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGCCTCATTTGAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * *
607569 CATGAACTTAGACTTTACAAAATTTGGAGCGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAAT
130 CACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * * ** * * ***
607634 ATCATGTATCATTATGGGAAAACTAAGTTTATGGTGCCTAATCCTAAAAAGAATAAAGATTAGTA
195 TTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
** * * *
607699 TGACTATTCACATTTGCCTTATTTAAGAGACGAACTTTGATTCTATCAAAAACGATGGAAAGAAA
260 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * * * *
607764 ACCTTTTCTTGCGACACCAAAGCATCCATGTCATATATCCTAAT-GAGGGAATGTGCTT-TCGGA
325 ACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTG-TTCTTGGT
* * * * * * *
607827 TCCCAATCTTGAAACGAGTGGAGACTGTTATGAGGAA-CAACGCTTGCCTTATTTAAGCGAT-AA
389 TCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCATATTTAAG-GATGAA
*
607890 GCTTTGATTTTAAGGAAAATAGGG
452 -TTTTGATTTTAAGGAAAATAGGG
* ** *
607914 CAAAGAAAATATTTTTATGCAAAAGAACTTCATTAATATCATTTATCCTAATGAAAAGAATGTGT
1 CAAAGAAAATATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGT
* * * *
607979 TTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAGTCGATGTTTATCTCATTTGAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * *
608044 CACGAACTTAGACTTTA-ACAAAATTGAAAGGAAGAAAGCCTTTCTCGCAAAACCAAAGCAACAA
130 CACGAACTTAGACTTTACA-AAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA
** * * ** ** * *
608108 TTTTGTCTATCCTAATGAGATTATTGGGTTTATGACGCCTAAT-CTTAGAAAGAATAGGGATTAG
194 TTTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAG
*
608172 TATGACTATTCATGTTTGTCTTATTTAAAAGGA-AAACTTTGATTCCT-TCAAAAACGGTGGAAA
258 TATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATT-CTATCAAAAACGGTGGAAA
* * * * **
608235 GAAAACCTTTTCCTGCGACACCAAAGCATCCATGTCTTGTATCCTAATGAAGGGAATGCATTCTT
321 GAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTT
* * * * *
608300 CGTTCCCAATCTTGAATAGAATGGAGACAGTTATGAGAATTGATGCTTGTCATATTTAAGAGATG
386 GGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAG-GATG
* * *
608365 AAGTTTGATTTAAAGGAAAATAGGA
450 AATTTTGATTTTAAGGAAAATAGGG
* *
608390 CAAAGAAAATA-TTTCAATGCAAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTCT
1 CAAAGAAAATATTTTC-ATGCAAAAAAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGT
* * * *
608454 TTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATCCTTGTTTATCTCATTTGAGC
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * * *
608519 CGCGAACTCAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCATAGCGTCAAT
130 CACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * ** * * *
608584 ATCATATATCCTTGTGAGAAGACTAAGTTTATGGTGCCTAATCCT-AAAATGAATAGGGATTAGT
195 TTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGT
** * * * * *
608648 ATGACTATTCATGTTTGTCTTATTTAAGAGGTAAACTTTGATTCTGTTAAGAACAGTAGAAAGAA
259 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * * **
608713 AACCTATTCTTGAGAC-CCGAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTCA
324 AACCTTTTCTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGG
* * *
608777 TTCCCAATCTTGAAGAGAATGGAGACAGTTACGAGAATCGATGCTTGTCATATTTAAGGGACGAA
388 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAA-GGATGAA
* *
608842 TTTTGATATAAAGGAAAATAGGG
452 TTTTGATTTTAAGGAAAATAGGG
** * * * * *
608865 TGAAGAAAAGATTTTCATGCAAAAAAAATCATCATTATCATTTATCCTAATGAAGAGAAGGTCTT
1 CAAAGAAAATATTTTCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGTT
* * *
608930 TATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAATTCATGTTTGTCTCATTTGAGGC
66 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * *
608995 ATGAACATAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAATGCAACAATT
131 ACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATT
* * * * *
609060 TCGTCTATCCTAATGAGTTGACTATGTTTATGATGCCTAATCTTGAAAATAATGGGGATTAGTAT
196 TCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * * *
609125 GACTA-TCGTGTTTGTCTTATTTCAGAGGA-AAACATTGATTCTATCAAAAACGGTAGAAAAAAA
261 GACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
** * * * * *
609188 ACCTTTTCTTATGAC-CACAAAGCATCAATGTCTTGTATCCTAATGAATGGAATGGGTTAC-TAG
325 ACCTTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTT-CTTGG
* * * * *
609251 TTCCCAATCTTGAAAAGAATGGAGACTGATGCAAGAATTGATGCTTGTCATATTTAAGGGATGAG
388 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAA-GGATGAA
* *
609316 TTTT-ATATTAAGGAAAATAGTG
452 TTTTGATTTTAAGGAAAATAGGG
* * * * * **
609338 TAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTGATGATGAGAATGTGT
1 CAAAGAAAATATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGT
* * * *
609403 TTATCGTGCCAAATCATAAAATGAATGAAGATCATTACTAGAATCCA-GATTTGTCACATTTGAG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTTGTCTCATTTGAG
* * *
609467 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAGACCAAAGCATCAA
129 GCACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * *** * *
609532 TTTCATCTCTCCTAATGAGTTGACTATGTTTACAATGCCTAATCCAGAAAAGAATAGGGATTAGT
194 TTTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * **
609597 ATGACTATTCAAGTTTGTCTTATTTAAGAGACATACTATGATTCTAACAAAAACAATGGAAAGAA
259 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * * * *
609662 ATCCTTTTTTTGTGACACTAAAACATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTCGTGGC
324 AACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGGT
* * * * * * *
609727 ACCCAAT-TTAGAGAAGAATAGAGACTATTATGAGAATCGATGCTTGTCATAATTAAGGAATGAG
389 TCCCAATCTT-GAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGG-ATGAA
*
609791 TTTTTATTTTAAGGAAAATAGGG
452 TTTTGATTTTAAGGAAAATAGGG
* * **
609814 CAAAG-AAATGATTTTCATACAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGT
1 CAAAGAAAAT-ATTTTCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGT
* * * * * * * * *
609878 TTATCGTGTCAAAACACAAAAAGAATGATGATCATTAGTAGAATCCATGTTTGTCTCTTTTAAGG
65 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * * * *
609943 TACAAACTTAGACTTTACCAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAGACCAAAGCACCAAT
130 CACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * *
610008 TTCATCTCTCCTAATGAGTTTACTATATTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTA
195 TTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * ** *
610073 TGACTATTCAAGTTTGTCTTATTTAAGAGACATACTATGATTCTAACAAAAACAATGGATAGAAA
260 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * * * * *
610138 TCCTTTTTTTTGTGACACTAAAACATCAATGTCATGTATCCTGAA-AAAGGGAATGTGTTCGTGG
325 ACC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATAAAGGGAATGTGTTCTTGG
* * * *
610202 TTCCCAAT-TTAGAAAAGAATAGAGACTATTATGAGAATCGATGCTTGTCATAATTAAGGAATGA
388 TTCCCAATCTT-GAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGG-ATGA
* *
610266 GTTTTTATTTTAAGGAAAATAGGG
451 ATTTTGATTTTAAGGAAAATAGGG
* **
610290 CAAAG-AAATGATTTTCATACAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
1 CAAAGAAAAT-ATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAAAAGAATGTG
* * * * * *
610354 TTTATTGTGCCAAAACACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCTTTTAAG
64 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * * * * * *
610419 GTACAAACTTAGAGTTTACCAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAGACCAAAGCACCAA
129 GCACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * *
610484 TTTCATCTCTCCTAGTGAGATGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
194 TTTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * ** **
610549 ATGACTATTCAAGTTTATCTTATTTAAGAGACATACTATGATTCTAAGAAAAACAATGGAAAGAA
259 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * * * * * * *
610614 ATCATTTTTTTGTGACACTAAAACATCATTGTCATTTATCCTAATGAAGGGAATGCGTTCTTCGT
324 AACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGGT
* * *
610679 TCCCAATCTTGAAAAGAATGGAGA-TAATTACGAGAATAGATGCTTGTTATATTTAAAGGATGAA
389 TCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCATATTT-AAGGATGAA
* *
610743 TTTTTATTTTAAGGAAAATAAGG
452 TTTTGATTTTAAGGAAAATAGGG
* ** * *
610766 CAAAGAAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCGAA--AAAGGACAATCG
1 CAAAGAAAATATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAAA--AGAAT-G
* * * * * * ** *
610829 -GTTTATCGTGCCAAAACATAAAATGAATGAAAATCTTTACTAGAATCTTTGTTTGTCTCATTTA
62 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * *
610893 AGGTATGAACTTAGACTTTACAAAAATT-GATGAGAAGAAAGCTTTTCTTGTGAAACCAAAGCAT
127 AGGCACGAACTTAGACTTTACAAAAATTGGA-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* **
610957 CAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAGGGAATGGGGATT
191 CAATTTCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
611022 AGTATGGCTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATGCTAAT-AAAAACGGTGGAA
256 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACGGTGGAA
* ** *
611086 AGAAAACCTTTTCTTGCGACAGCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGAGTTCT
320 AGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCT
**
611151 TGGTTCCCAATCTAAAAAAGAAT
385 TGGTTCCCAATCTTGAAAAGAAT
611174 AGAAGCTAAG
Statistics
Matches: 3670, Mismatches: 480, Indels: 118
0.86 0.11 0.03
Matches are distributed among these distances:
472 2 0.00
473 401 0.11
474 412 0.11
475 1460 0.40
476 1091 0.30
477 304 0.08
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
CAAAGAAAATATTTTCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGTT
TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATT
TCATCTATCCTAATGAGATGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
CCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTC
CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGATGAATTTT
GATTTTAAGGAAAATAGGG
Found at i:613009 original size:474 final size:475
Alignment explanation
Indices: 611236--614093 Score: 2665
Period size: 474 Copynumber: 6.1 Consensus size: 475
611226 TGTCATACTA
* * * * * *
611236 ATGACTATTCAAGTTTGCCTTATTTAAGA-GAAAATCTTTGATTCTATCAAAAAAACAGTAGAAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAA-CTTTGATTCTA--ACAAAAATAGTGGAAA
* * * ** * *
611300 GAAATCCTTTTTTGTTGCTACACCAAAGCATCAATTTCATTTATCCTAATG-AGAGGAATGTGTT
63 GAAAACC--TTTTCTTGCGACACCAAAGCATCAATGACATGTATCCTAATGAAG-GGAATGCGTT
* * * ** * *** ** * *
611364 ATTGGTTCCTAATCTTGAAAAAAACGGAGATTGTTGTGAGAATCGATGCCTATCATATTTAAGGG
125 CTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGA
* * * * *
611429 ATTAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAATATTTCTATACAAAAGAAAATAATCAAT
190 ATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * * * * * *
611494 ATCATTTATCCTAA-AAAGGACAAGGAGTTTATCATGCCAAAACACAAAATCAATGAAAATCTTT
255 ATCATTTATCCTAATAAA-GAAAATGTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATT
* ** * *
611558 ACTAGAATCCATGTTTGTCTTTTTTGA-G-AC--AC---GA----GC-----TTGGTTGGAAGAA
319 ACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * *
611607 AGCCTTTCCTGTGAAACGAAAGCATCAATTTCCATCTATCCTAATGAGTTGACTATGTTTATGGT
383 AGCCTTTCTTGCGAAACCAAAGCATCAATTT-CATCTATCCTAATGAGTTGACTATGTTTATGGT
* *
611672 GCCTAATCCTGAAAGGATTAGGGATTAGT
447 GCCTAATCCTGAAAGGAATGGGGATTAGT
** *
611701 ATGACTATTCATGTTTGTCTTATTTAAGAGTTAAATTTTGATTCTAACAAAAACTA-TGGAAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA-TAGTGGAAAGA
* *
611765 AAATCTTTTCTTGTGACACCAAAGCATCAATG-CAATGTATCCTAATGAAGGGAATGCGTTCTTG
65 AAACCTTTTCTTGCGACACCAAAGCATCAATGAC-ATGTATCCTAATGAAGGGAATGCGTTCTTG
* ** * *
611829 GCTCCCAATCTAAAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCTTAATTAAGGAATGA
129 GTTCCCAATCTTGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGAATGA
* * *
611894 ATTTTTAATTTAAGGAAAATCA-AGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAATATC
194 ATTTTTATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * *
611958 ATTTATCATAAATGAGGAGAATGTGTTTGTAATGCCTAATCAAAAAATAAAAGAAGATCATTACT
258 ATTTATCCT-AATAAAGAAAATGTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATTACT
* * * * * * *
612023 AGAATCCATGTTTGTCTCACTTGAAGCACGAACTTAGGCTTTATAAAATTTGGTAGGAAGAAAGC
322 GGAAT-CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * * *
612088 CCTTCTTGCGAGACCAAAGCATCAATTTCATCTTTCCTAATGAGTTGACTATATTTATGGTGCCT
386 CTTTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCT
* **
612153 AATCCTAAAATTAATGGGGATTAGT
451 AATCCTGAAAGGAATGGGGATTAGT
* * * * *
612178 ATGACTATTCAAGTTAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAACAGTGAAAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGC-AAACTTTGATTCTAACAAAAATAGTGGAAAGA
* * * * * ** * * *
612243 AAACCTTTTTTTGCGACCCCAAAGCATTAAT-ATTATTTATCCTAACAAAAGAAATGTGTTCTTG
65 AAACCTTTTCTTGCGACACCAAAGCATCAATGA-CATGTATCCTAATGAAGGGAATGCGTTCTTG
* * * * ** *
612307 GTTCCCGATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATCCTTGTCATATTTAAGGGATGA
129 GTTCCCAATCTTGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGAATGA
*
612372 A-TTTTATTTCAA-GAAAATAGGGCAAAGAAAAGATTTCCATGCACAAA-AAAATCATCAATATC
194 ATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAATCATCAATATC
* * ** * * * * * * *
612434 ATTTATCCTAA-AACAGACAGTGTGTTTATCGTGCCAAAACACAAAATGAATGAAAAGCTTTGCT
258 ATTTATCCTAATAA-AGAAAATGTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATTAC-
* * * *
612498 TGGATTCATGTTTCTCTCATTTGAGGCACAAACTTAGATTTTACAAAAATTGGTGGGAAGAAAGC
321 TGGAATCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * ** *
612563 CTTTCTTGTGAAACTAAAGCATCAATTTTGTCTTTCCTAATGAGTTGACTATGTTTATGGTGCCT
386 CTTTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCT
*
612628 AATCCTGAAAGGAATGGGGATTATT
451 AATCCTGAAAGGAATGGGGATTAGT
* * * *
612653 ATGGCTATTCATGCTTGTCTTATTTAAGAGGCAAACTTTGATTCCAACAAAAATGGTGGAAA-AA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAA
* * * ***
612717 AACCTTTTCTTGTGACAGCAAAGTATCAATGACATGTATCCTAATGAAGGGACCACGTTCTTGGT
66 AACCTTTTCTTGCGACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGCGTTCTTGGT
* * * * *
612782 TCCTAATCTAT-AAATGAATAGAAACTGTCACGAGAATCGATG-TTGCCATAGTTAAGGAATGAA
131 TCCCAATCT-TGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGAATGAA
* * *
612845 TTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCGAAAGAAAATCATCAACATCAT
195 TTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
*
612910 TTATCCTAATAAAGAAAATGTGTTTACT-ATGCGTAATCACAAAATAAATGAAGATCATTACTGG
260 TTATCCTAATAAAGAAAATGTGTTTA-TAATGCCTAATCACAAAATAAATGAAGATCATTACTGG
* * * * * *
612974 AATCTATGTTGGTCTCTTTTGAGGTATGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGGCT
324 AATC-ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* * * **
613039 TTTTTACGAAACCAAAGAATCAATTTTGTCTATCCT--T-AGTTGACTATGTTTATGGTGCCTAA
388 TTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCTAA
* *
613101 TCTTGAAAAGAATGGGGATTAGT
453 TCCTGAAAGGAATGGGGATTAGT
* * * * *
613124 ATGACTATTCATATTTGTATTATTTTAGAGGCAAATTTTGATTCTATCAAAAATAGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAA
* * * * * * *
613189 AACCTTTTCTTGCGACCCCAAAGTATCAATGTCTTGTATCCTAAAGAAGGGAATGCATTCTTAGT
66 AACCTTTTCTTGCGACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGCGTTCTTGGT
* * * * * * * * * *
613254 TCCC-ATCTTGAAATGAATAGAGACAGTTACAAGAATCAATGCTTATCATATTTGAGGGATGAAA
131 TCCCAATCTTGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGAATGAAT
* * * *
613318 TTTTATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATTCAAAAGAAAATCATCTATATCATT
196 TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* ** * *
613383 TATCCTAA-AGAGGGGAATGTG-TT-T-AT-CGT--GC-C------AAT-----TC---A-T-G-
261 TATCCTAATA-AAGAAAATGTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATTACTGGA
* *
613423 --C----TTGTCTCATTTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGAGAAG-AAGCCTTT
325 ATCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
* * * * *
613481 CTTGC-AAACGCAAAGCATCAATTTCGTCTACCCTAATAAGATGACTATATTTATGGTGCCTAAT
390 CTTGCGAAAC-CAAAGCATCAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCTAAT
**
613545 CCTGAAAAAAATGGGGATTAGT
454 CCTGAAAGGAATGGGGATTAGT
* * * *
613567 ATGACTGTTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAAT-GACGGAAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAG-TGGAAAGA
* * * * * * *
613631 AAATCTTTTCTTGCTACACCAAAACATCAATGTCATGTATCCAAATGAAGGGAATGTGTTTTTGG
65 AAACCTTTTCTTGCGACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGCGTTCTTGG
* * * * * * * * *
613696 TTCCCAATCTTGAAAAGAATTGAGATTGTTACTAGAATCAATGCTTATCATATTTAA-AAGATAA
130 TTCCCAATCTTGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGA-ATGA
* * * * * *
613760 ATGTTTATTTTATGGAAAATAGGCCAAAG-AAAGATTTCCACGCAAAA-AAAACCATCAATATCT
194 ATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * * ** * * * * *
613823 TTTATCCTAATGACGAGAATTTATTTATTGTGCCAAAACACAAAATGAATAAAGATCATTACTAG
259 TTTATCCTAATAAAGAAAATGTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATTACTGG
* ** * * * * *
613888 AGTCCATGTTTGTCTTTTTTGATGTACGAACTTAAACTTTACAAAAATTAGTGGAAAGAAAGCCT
324 AAT-CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT
* * ** *
613953 TTCTTGCTAAACTAAAGCATCAATTTTGTCTATCCTAATGAGTTGACTATGTTGATGGTGCCTAA
388 TTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCTAA
* *
614018 TCTTGAAAAGAATGGGGATTAGT
453 TCCTGAAAGGAATGGGGATTAGT
* * *
614041 ATTACTATTCATGTTTGTCTTATTTAAGAGGTAAACTTTGATTCTATCAAAAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA
614094 CGGAATGTAT
Statistics
Matches: 1955, Mismatches: 354, Indels: 159
0.79 0.14 0.06
Matches are distributed among these distances:
439 4 0.00
440 31 0.02
441 42 0.02
442 32 0.02
443 173 0.09
444 72 0.04
445 1 0.00
446 2 0.00
448 1 0.00
449 2 0.00
450 1 0.00
451 1 0.00
454 2 0.00
455 3 0.00
459 3 0.00
460 3 0.00
461 157 0.08
462 63 0.03
463 19 0.01
464 4 0.00
465 39 0.02
466 6 0.00
468 3 0.00
469 5 0.00
470 1 0.00
471 131 0.07
472 168 0.09
473 140 0.07
474 327 0.17
475 200 0.10
476 54 0.03
477 96 0.05
478 169 0.09
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (475 bp):
ATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAA
AACCTTTTCTTGCGACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGCGTTCTTGGT
TCCCAATCTTGAAAAGAATAGAGACTGTCACGAGAATCGATGATTGTCATATTTAAGGAATGAAT
TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
TATCCTAATAAAGAAAATGTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATTACTGGAA
TCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTC
TTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGTTGACTATGTTTATGGTGCCTAATCC
TGAAAGGAATGGGGATTAGT
Found at i:614474 original size:436 final size:434
Alignment explanation
Indices: 613665--614531 Score: 1044
Period size: 436 Copynumber: 2.0 Consensus size: 434
613655 CATCAATGTC
* * * ** * * * *
613665 ATGTATCCAAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGAGATTGTTACTA
1 ATGTATCCAAATGAAGGGAATGCGTTCTTGGCTCCCAATCTAAAAAAGAATAGAGACTGTCACGA
* * * * *
613730 GAATCAATGCTTATCATATTTAAAAGATAAATGTTTATTTTATGGAAAATAGGCCAAAGAAAGAT
66 GAATCAATGATTATCATAATTAAAAGATAAATGTTTAATTTAAGGAAAATAAGCCAAAGAAAGAT
* * * * **
613795 TTCCACGCAAAAAAAACCATCAATATCTTTTATCCTAATGACGAGAATTTATTTATTGTGCCAAA
131 TTACACGCAAAAAAAACCATCAATATCATTTATCATAATGACGAGAATGTATTTATAATGCCAAA
* * * *** * *
613860 ACACAAAATGAATAAAGATCATTACTAGAGTCCATGTTTGTCTTTTTTGATGTACGAACTTAAAC
196 ACAAAAAATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCACTTGAAGCACGAACTTAAAC
* * * **
613925 TTTACAAAAATTAGTGGAAAGAAAGCCTTTCTTGCTAAACTAAAGCATCAATTTTGTCTATCCTA
261 TTTACAAAAATTAGTGGAAAGAAAGCCCTTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTA
* * * *
613990 ATGAGTTGACTATGTTGATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATTACTATTCATGT
326 ATGAGTTGACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGT
* ** *
614055 TTGTCTTATTTAAGAG-GTAAACTTTGATTCTATCAAAAACGGA
391 TAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAACGGA
*
614098 ATGTATCCTAATGAAGGGAATGCGTTCTTGGCTCCCAATCTAAAAAAGAATAGAGACTGTCACGA
1 ATGTATCCAAATGAAGGGAATGCGTTCTTGGCTCCCAATCTAAAAAAGAATAGAGACTGTCACGA
* * * * * *
614163 GAATCGATGATTGTCTTAATT-AAGGAATGAATTTTTAATTTAAGGAAAATCAAG-CAAAGAAAA
66 GAATCAATGATTATCATAATTAAAAG-ATAAATGTTTAATTTAAGGAAAAT-AAGCCAAAG-AAA
* * * * *
614226 GATTTACATGCAAAAGAAAATCATCAATATCATTTATCATAAATGAGGAGAATGTGTTTGTAATG
128 GATTTACACGCAAAA-AAAACCATCAATATCATTTATCAT-AATGACGAGAATGTATTTATAATG
* *
614291 CCTAATCAAAAAAT-AAAAGAAGATCATTACTAGAATCCATGTTTGTCTCACTTGAAGCACGAAC
191 CCAAAACAAAAAATGAAAA-AAGATCATTACTAGAATCCATGTTTGTCTCACTTGAAGCACGAAC
** * * * *
614355 TTAGGCTTTATAAAATTTGGTAGG-AAGAAAGCCCTTCTTGCGAGACCAAAGCATCAATTTCATC
255 TTAAACTTTACAAAAATTAGT-GGAAAGAAAGCCCTTCTTGCGAAACCAAAGCATCAATTTCATC
* * *
614419 TTTCCTAATGAGTTGACTATATTTATGGTGCCTAATCCT-AAAATTAATGGGGATTAGTATGACT
319 TATCCTAATGAGTTGACTATATTGATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGACT
614483 ATTCAAGTTAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAAC
383 ATTCAAGTTAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAAC
614532 AGTGAAAAGA
Statistics
Matches: 361, Mismatches: 64, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
432 3 0.01
433 96 0.27
434 18 0.05
435 28 0.08
436 193 0.53
437 23 0.06
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (434 bp):
ATGTATCCAAATGAAGGGAATGCGTTCTTGGCTCCCAATCTAAAAAAGAATAGAGACTGTCACGA
GAATCAATGATTATCATAATTAAAAGATAAATGTTTAATTTAAGGAAAATAAGCCAAAGAAAGAT
TTACACGCAAAAAAAACCATCAATATCATTTATCATAATGACGAGAATGTATTTATAATGCCAAA
ACAAAAAATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCACTTGAAGCACGAACTTAAAC
TTTACAAAAATTAGTGGAAAGAAAGCCCTTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTA
ATGAGTTGACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGT
TAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAACGGA
Found at i:615297 original size:474 final size:474
Alignment explanation
Indices: 614098--616393 Score: 2300
Period size: 474 Copynumber: 4.9 Consensus size: 474
614088 CAAAAACGGA
* **
614098 ATGTATCCTAATGAAGGGAATGCGTTCTTGGCTCCCAATCTAAAAAAGAATAGAGACTGTCACGA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCACGA
* * * *
614163 GAATCGATGATTGTCTTAATTAAGGAATGAATTTTTAATTTAAGGAAAATCA-AGCAAAGAAAAG
66 GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAAT-AGGGCAAAGAAAAG
* * * * * *
614227 ATTTACATGCAAAAGAAAATCATCAATATCATTTATCATAAATGAGGAGAATGTGTTTGTAATGC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATAAAGAAAATGTGTTTATAATGC
* * * * *
614292 CTAATCAAAAAATAAAAGAAGATCATTACTAGAATCCATGTTTGTCTCACTTGAAGCACGAACTT
194 CTAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * **
614357 AGGCTTTATAAAATTTGGTAGGAAGAAAGCCCTTCTTGCGAGACCAAAGCATCAATTTCATCTTT
258 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTT
* *
614422 CCTAATGAGTTGACTATATTTATGGTGCCTAATCCT-AAAATTAATGGGGATTAGTATGACTATT
323 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGACTATT
* * * *
614486 CAAGTTAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAACAGTGAAAAGAAAACCTTTT
387 CATGTT-GTCTTATTTAAGAGGC-AAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTT
* * * *
614551 TTTGCGACCCCAAAGCATTAAT-ATT
450 CTTGCGACCCCAAAGTATCAATGA-C
* ** * * * * * * *
614576 ATTTATCCTAACAAAAGAAATGTGTTCTTGGTTCCCGATCTTGAAAAGAATGGAGATTGTTACGA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCACGA
** * *
614641 GAATCGATCCTTGTCATATTTAAGGGATGAATTTTTATTTCAA-GAAAATAGGGCAAAGAAAAGA
66 GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * **
614705 TTTCCATGCACAAA-AAAATCATCAATATCATTTATCCTAA-AACAGACAGTGTGTTTATCGTGC
131 TTTCCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATAA-AGAAAATGTGTTTATAATGC
* * * * * * * * * *
614768 CAAAACACAAAATGAATGAAAAGCTTTGCTTGGATTCATGTTTCTCTCATTTGAGGCACAAACTT
194 CTAATCACAAAATAAATGAAGATCATTAC-TGGAATCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
614833 AGATTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAATTTTGTCTTT
258 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTT
* * *
614898 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTATTATGGCTATTC
323 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* *
614963 ATGCTTGTCTTATTTAAGAGGCAAACTTTGATTCCAACAAAAATGGTGGAAA-AAAACCTTTTCT
388 ATG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCT
* **
615027 TGTGACAGCAAAGTATCAATGAC
452 TGCGACCCCAAAGTATCAATGAC
*** * * *
615050 ATGTATCCTAATGAAGGGACCACGTTCTTGGTTCCTAATCTAT-AAATGAATAGAAACTGTCACG
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCT-TGAAAAGAATAGAGACTGTCACG
* *
615114 AGAATCGATG-TTGCCATAGTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
65 AGAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
* * *
615178 ATTCCCATGCGAAAGAAAATCATCAACATCATTTATCCTAATAAAGAAAATGTGTTTACT-ATGC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTA-TAATGC
* * * * *
615242 GTAATCACAAAATAAATGAAGATCATTACTGGAATCTATGTTGGTCTCTTTTGAGGTATGAACTT
194 CTAATCACAAAATAAATGAAGATCATTACTGGAATC-ATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * *
615307 AGACTTTACAAAAATTAGTGGGAAGAAAGGCTTTTTTACGAAACCAAAGAATCAATTTTGTCTAT
258 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTT
*
615372 CCT--T-AGTTGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTC
323 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * * * *
615434 ATATTTGTATTATTTTAGAGGCAAATTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCT
388 AT-GTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCT
*
615499 TGCGACCCCAAAGTATCAATGTC
452 TGCGACCCCAAAGTATCAATGAC
* * * * * * * *
615522 TTGTATCCTAAAGAAGGGAATGCATTCTTAGTTCCC-ATCTTGAAATGAATAGAGACAGTTACAA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCACGA
* * * * * * * *
615586 GAATCAATGCTTATCATATTTGAGGGATGAAATTTTATTTTAAGGAAAATAAGGTAAAGAAAAGA
66 GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * ** *
615651 TTTCCATTCAAAAGAAAATCATCTATATCATTTATCCTAA-AGAGGGGAATGTG-TT-T-AT-CG
131 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AAGAAAATGTGTTTATAATGCC
*
615711 T--GC-C------AAT-----TC---A-T-G---C----TTGTCTCATTTGAGGCACGAACTTAG
195 TAATCACAAAATAAATGAAGATCATTACTGGAATCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * **
615750 GCTTTACAAAAATTGGTGAGAAG-AAGCCTTTCTTGC-AAACGCAAAGCATCAATTTCGTCTACC
260 ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC-CAAAGCATCAATTTTGTCTTTC
* * * * *
615813 CTAATAAGATGACTATATTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTGTTCA
324 CTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
615878 AGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAAT-GACGGAAAGAAAATCTTTTCT
389 TG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAG-TGGAAAGAAAACCTTTTCT
* * ** *
615942 TGCTACACCAAAACATCAATGTC
452 TGCGACCCCAAAGTATCAATGAC
* * * * * * *
615965 ATGTATCCAAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGAGATTGTTACTA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCACGA
* * * * * * * *
616030 GAATCAATGCTTATCATATTTAA-AAGATAAATGTTTATTTTATGGAAAATAGGCCAAAG-AAAG
66 GAATCGATGATTGTCATATTTAAGGA-ATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * * * * **
616093 ATTTCCACGCAAAA-AAAACCATCAATATCTTTTATCCTAATGACGAGAATTTATTTATTGTGCC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTATAATGCC
* * * * * * ** * *
616157 AAAACACAAAATGAATAAAGATCATTACTAGAGTCCATGTTTGTCTTTTTTGATGTACGAACTTA
195 TAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * * *
616222 AACTTTACAAAAATTAGTGGAAAGAAAGCCTTTCTTACTAAACTAAAGCATCAATTTTGTCTATC
259 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTTC
* * *
616287 CTAATGAGTTGACTATGTTGATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATTACTATTCA
324 CTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* *
616352 TGTTTGTCTTATTTAAGAGGTAAACTTTGATTCTATCAAAAA
389 TG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAA
616394 CGGAATGTAT
Statistics
Matches: 1496, Mismatches: 262, Indels: 124
0.79 0.14 0.07
Matches are distributed among these distances:
439 4 0.00
440 31 0.02
441 42 0.03
442 32 0.02
443 172 0.11
444 72 0.05
445 1 0.00
446 2 0.00
448 1 0.00
449 2 0.00
450 1 0.00
451 1 0.00
454 2 0.00
455 3 0.00
459 3 0.00
460 2 0.00
463 1 0.00
464 1 0.00
465 2 0.00
466 1 0.00
468 3 0.00
469 4 0.00
470 1 0.00
471 131 0.09
472 150 0.10
473 78 0.05
474 378 0.25
475 36 0.02
476 189 0.13
477 59 0.04
478 91 0.06
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (474 bp):
ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTCACGA
GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTATAATGCCT
AATCACAAAATAAATGAAGATCATTACTGGAATCATGTTTGTCTCATTTGAGGCACGAACTTAGA
CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTTCCT
AATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCTTGCG
ACCCCAAAGTATCAATGAC
Found at i:617597 original size:474 final size:474
Alignment explanation
Indices: 616398--621014 Score: 3938
Period size: 475 Copynumber: 9.7 Consensus size: 474
616388 CAAAAACGGA
* **
616398 ATGTATCCTAATGAAGGGAATGCGTTCTTGGCTCCCAATCTAAAAAAGAATA-AAGACTGTCACG
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAA-ACTGTCACG
* * * *
616462 AGAATCGATGATTGTCTTAATTAAGGAATGAATTTTTAATTTAAGGAAAATCA-AGCAAAGAAAA
65 AGAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAAT-AGGGCAAAGAAAA
* * * * * *
616526 GATTTACATGCAAAAGAAAATCATCAATATCATTTATCATAAATGAGGAGAATGTGTTTGTAATG
129 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATAAAGAAAATGTGTTTATAATG
* * * * *
616591 CCTAATCAAAAAATAAAAGAAGATCATTACTAGAATCCATGTTTGTCTCACTTGAAGCACGAACT
193 CCTAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACT
* * * * * * **
616656 TAGGCTTTATAAAATTTGGTAGGAAGAAAGCCCTTCTTGCGAGACCAAAGCATCAATTTCATCTT
257 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTT
* *
616721 TCCTAATGAGTTGACTATATTTATGGTGCCTAATCCT-AAAATTAATGGGGATTAGTATGACTAT
322 TCCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGACTAT
* * * *
616785 TCAAGTTAGTCTTATTTAAGAGACAAAACTTTGATTCTAACAAAAACAGTGAAAAGAAAACCTTT
386 TCATGTT-GTCTTATTTAAGAGGC-AAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTT
* * * *
616850 TTTTGCGACCCCAAAGCATTAAT-ATT
449 TCTTGCGACCCCAAAGTATCAATGA-C
* ** * * * * * * * *
616876 ATTTATCCTAACAAAAGAAATGTGTTCTTGGTTCCCGATCTTGAAAAGAATGGAGATTGTTACGA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
** * *
616941 GAATCGATCCTTGTCATATTTAAGGGATGAATTTTTATTTCAA-GAAAATAGGGCAAAGAAAAGA
66 GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * **
617005 TTTCCATGCACAAA-AAAATCATCAATATCATTTATCCTAA-AACAGACAGTGTGTTTATCGTGC
131 TTTCCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATAA-AGAAAATGTGTTTATAATGC
* * * * * * * * * *
617068 CAAAACACAAAATGAATGAAAAGCTTTGCTTGGATTCATGTTTCTCTCATTTGAGGCACAAACTT
194 CTAATCACAAAATAAATGAAGATCATTAC-TGGAATCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
617133 AGATTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAATTTTGTCTTT
258 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTT
* * *
617198 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTATTATGGCTATTC
323 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* *
617263 ATGCTTGTCTTATTTAAGAGGCAAACTTTGATTCCAACAAAAATGGTGGAAA-AAAACCTTTTCT
388 ATG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCT
* **
617327 TGTGACAGCAAAGTATCAATGAC
452 TGCGACCCCAAAGTATCAATGAC
*** * *
617350 ATGTATCCTAATGAAGGGACCACGTTCTTGGTTCCTAATCTAT-AAATGAATAGAAACTGTCACG
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCT-TGAAAAGAATAGAAACTGTCACG
* *
617414 AGAATCGATG-TTGCCATAGTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
65 AGAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
* * *
617478 ATTCCCATGCGAAAGAAAATCATCAACATCATTTATCCTAATAAAGAAAATGTGTTTACT-ATGC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTA-TAATGC
* * * * *
617542 GTAATCACAAAATAAATGAAGATCATTACTGGAATCTATGTTGGTCTCTTTTGAGGTATGAACTT
194 CTAATCACAAAATAAATGAAGATCATTACTGGAATC-ATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * *
617607 AGACTTTACAAAAATTAGTGGGAAGAAAGGCTTTTTTACGAAACCAAAGAATCAATTTTGTCTAT
258 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTT
*
617672 CCT--T-AGTTGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTC
323 CCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * * * *
617734 ATATTTGTATTATTTTAGAGGCAAATTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCT
388 AT-GTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCT
*
617799 TGCGACCCCAAAGTATCAATGTC
452 TGCGACCCCAAAGTATCAATGAC
* * * * * * * * *
617822 TTGTATCCTAAAGAAGGGAATGCATTCTTAGTTCCC-ATCTTGAAATGAATAGAGACAGTTACAA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
* * * * * * * *
617886 GAATCAATGCTTATCATATTTGAGGGATGAAATTTTATTTTAAGGAAAATAAGGTAAAGAAAAGA
66 GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * ** *
617951 TTTCCATTCAAAAGAAAATCATCTATATCATTTATCCTAA-AGAGGGGAATGTG-TT-T-AT-CG
131 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AAGAAAATGTGTTTATAATGCC
*
618011 T--GC-C------AAT-----TC---A-T-G---C----TTGTCTCATTTGAGGCACGAACTTAG
195 TAATCACAAAATAAATGAAGATCATTACTGGAATCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * **
618050 GCTTTACAAAAATTGGTGAGAAG-AAGCCTTTCTTGC-AAACGCAAAGCATCAATTTCGTCTACC
260 ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC-CAAAGCATCAATTTTGTCTTTC
* * * * *
618113 CTAATAAGATGACTATATTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTGTTCA
324 CTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
618178 AGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAAT-GACGGAAAGAAAATCTTTTCT
389 TG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAG-TGGAAAGAAAACCTTTTCT
* * ** *
618242 TGCTACACCAAAACATCAATGTC
452 TGCGACCCCAAAGTATCAATGAC
* * * * * * * *
618265 ATGTATCCAAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGAGATTGTTACTA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
* * * * * * * *
618330 GAATCAATGCTTATCATATTTAA-AAGATAAATGTTTATTTTATGGAAAATAGGCCAAAG-AAAG
66 GAATCGATGATTGTCATATTTAAGGA-ATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * * * * * **
618393 ATTTCCACGCAAAAAAAAACCATCAATATCTTTTATCCTAATGACGAGAATTTATTTATTGTGCC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTATAATGCC
* * * * * * ** * *
618458 AAAACACAAAATGAATAAAGATCATTACTAGAGTCCATGTTTGTCTTTTTTGATGTACGAACTTA
195 TAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * *
618523 AACTTTACAAAAATTAGTGGAAAGAAAGCCTTTCTTGCTAAACTAAAGCATCAATTTTGTCTGTC
259 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTTC
* * *
618588 CTAATGAGTTGACTATGTTGATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATTACTATTCA
324 CTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * ** * **
618653 TGTTTGTCTTATTTAAGAGGTAAACTTTGATTCTATCAAAAACGGTGGAAAGAACAGTTTTTCTT
389 TG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCTT
* * * *
618718 GCGACACCAAAGCATTAATGTC
453 GCGACCCCAAAGTATCAATGAC
* * * * * * * **
618740 ATGTATCCTAATAAAGGGAATGTGTTATTAGTTCCCAATCTAGAAAAGAATAGAGACTATTGCGA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
* * *
618805 GAATCGATTG-TTGTCATAATTAAAGAATGAATTTTTATTTTAA-GAAAGATAAGGCAAA-AAAA
66 GAATCGA-TGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAA-ATAGGGCAAAGAAAA
* * ** *
618867 TGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAAT-GTGAAGAATGTGTTTATCAT
129 -GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAA-AATGTGTTTATAAT
* * * * * * ** ** * * *
618931 TCCAAAACACAAAATGAGTGAAGATCATTGCTATAATCCATGTTTGTGACTTTTGAGGTATGAAC
192 GCCTAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAAC
* * *
618996 TTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATTTCGTCT
256 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCT
* * * *
619061 ATCCTAATGAGTTGACTATGTTTATGTTGCCTCATGCTGAAAAGAAT-GGGATTAGTATGACTAT
321 TTCCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* *
619125 TCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAATTAGTGGAAAGAAAACATTTT
386 TCATG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTT
* * *
619190 CTTGCGACACCAAAGTGTCAATGTC
450 CTTGCGACCCCAAAGTATCAATGAC
* * * * * * * *
619215 ATCTATGCTTATGAAGCGG-ATGCGTTCTTGGTT-CTAATCTGGAAAAGAATAGAGACTGCCATG
1 ATGTATCCTAATGAAG-GGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACG
* * * * * * * *
619278 AGAATCCATGACTGACCTAATTAAGGGAGGAA-TTTTATTTTAAAGAAAATA-GGCAAA-AAACA
65 AGAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAA-A
* * * *
619340 GATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCTAA-AGAGGAAAATTTGTTTACAATG
129 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AAGAAAATGTGTTTATAATG
* * * * * *
619404 CATAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCACTTGAGGCATGAACT
193 CCTAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACT
** * *
619469 TAGACTTTA-AAAAATTTGAAGGGAAGAAAGCCTTTCTTGC-AAATGCAAAGCATCAATTTCGTC
257 TAGACTTTACAAAAA-TTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATTTTGTC
* * * * * * ** * *
619532 TATT-CTAATGAGATGGCTTTGTTTATGGTGCCTAACCCCGAAAAGAATAGACATTAGCACGACT
320 T-TTCCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * *
619596 ATTCATGTTTGTCTTATCTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACCTT
384 ATTCATG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTT
* ** * * *
619661 TTCTTGCAATACCAAGGCATCAATGTC
448 TTCTTGCGACCCCAAAGTATCAATGAC
* * * * * * * *
619688 ATGGATACTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTATGA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
* * * ** * * * *
619753 GAATTGAT-ACTTGTCATAATTAAAGAAT-TTTTTTTCTTTTAATGAAAATAGGGTAAAGAAAAC
66 GAATCGATGA-TTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * * * * **
619816 ATTTTCACGCAAAGGAAATTCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATCGTGCC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTATAATGCC
* * * * * *
619881 AAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTCGAGGCACGAACTTA
195 TAATCACAAAATAAATGAAGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACTTA
* **
619946 GACTTT-CTACAAATTGG-GGGAAAGAAAGCCTTTC-TG-G--ACCAAAGCATCAATTTTGTCCA
259 GACTTTAC-AAAAATTGGTGGG-AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTT
* * * * *
620005 TCCTATTGACTTGACTATGTTTATGGTGCCTAATCCTGAAAAAAATAGGGATTTGTATGACTATT
322 TCCTAATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
** *
620070 CATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGTTGAAAGAAAACCTTTTC
387 CATG-TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTC
* * * *
620135 TTGTGACACTAAAGCATCAATGAC
451 TTGCGACCCCAAAGTATCAATGAC
* * * * *
620159 ATGCATCCTATTGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAATGCATCCTTTTAAAGGGAA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAG-A-------ATA--GAA
** ** * * * * * * *
620224 TGTGTTCTTG-GTTCCCAATCTTAAAAAGAATG-GAGATTGTTACGAGAATTGATTCTTGTTATA
56 ACTG-TCACGAG-----AATC----GATGATTGTCATA-T-TTAAG-GAA-TGAAT-TT-TTAT-
* *
620287 TTTAAGGGATGAATTTTATTTTAAGGAAAAGTGTCCAAAAAAAAGATTTCCATGCAAAAGAAATT
104 TTTAA-GGA--AA----A---T-A-G----G-G--CAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * *
620352 CATCAATATCATTTATCATAATTGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAA-GA
150 CATCAATATCATTTATCCTAA-TAAAGAAAATGTGTTTATAATGCCTAATCACAAAAT-AAATGA
* ** * * * * *
620416 AGATCATTGCAAGAATCCATGTTTATCTTATTTGAGACACGAACTTAGACTTTTCAAAAATTGTT
213 AGATCATTACTGGAAT-CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * ** * **
620481 GGGAATAAAGCTTTTCTTGTGAAACCAAAGAATCAATTTCATCTGTCCTAATGAAATGACTATGT
277 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTTCCTAATGAGTTGACTATGT
* ** * * * *
620546 TTATGGTTCCTAATCCAAAAAAGAATGGGGATTAGTATAACAATTCTTGTTTGTCTTATTTTAGA
342 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG-TTGTCTTATTTAAGA
* * ** * * * *
620611 GGCAAACTATGATTCTATCAAAAACGGTGGGAAGAAAATCTTTTCCTGCCACCCCAAAGTATCAA
406 GGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACCCCAAAGTATCAA
*
620676 TGTC
471 TGAC
* * * * *
620680 TTGTATCCTAATGAAGGGAATGCATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGA
1 ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
* * **
620745 GAATCAATGCTTGTCATATTTAA-GAGATGAATTTTTATTTTAAGGAAAATAGGGCAGTGAAAAG
66 GAATCGATGATTGTCATATTTAAGGA-ATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * ** *
620809 ATTTTCATGCAAAGGAAATTCATCAATATCATTTATCCTAATGAGGGGAATGTGTTTAT-CTAGC
130 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTATAAT-GC
* * * * * * *
620873 CAAATTACAATAT-GATTATAGACCATTACTGGAATCTATGTTTGTCTCATTTGAGGCACAAACT
194 CTAATCACAAAATAAATGA-AGATCATTACTGGAATC-ATGTTTGTCTCATTTGAGGCACGAAC-
* * * * * * *
620937 TTAGTCTTTACAAAATTTGGTGGGAAGAAAGCCCTTCTTGTGAGACCAAAGCATCAATTTCGTGT
256 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCT
*
621002 CTCCTAATGAGTT
321 TTCCTAATGAGTT
621015 ATGTCGCAAC
Statistics
Matches: 3374, Mismatches: 611, Indels: 309
0.79 0.14 0.07
Matches are distributed among these distances:
439 4 0.00
440 31 0.01
441 42 0.01
442 2 0.00
443 200 0.06
444 73 0.02
445 1 0.00
446 2 0.00
447 1 0.00
449 2 0.00
450 2 0.00
451 1 0.00
454 2 0.00
456 3 0.00
459 3 0.00
461 2 0.00
464 1 0.00
465 2 0.00
466 2 0.00
468 3 0.00
469 3 0.00
470 3 0.00
471 328 0.10
472 351 0.10
473 178 0.05
474 413 0.12
475 550 0.16
476 470 0.14
477 168 0.05
478 88 0.03
479 3 0.00
480 1 0.00
481 5 0.00
482 3 0.00
484 1 0.00
485 1 0.00
486 4 0.00
489 3 0.00
490 3 0.00
491 4 0.00
492 3 0.00
493 3 0.00
494 2 0.00
495 5 0.00
496 8 0.00
497 9 0.00
498 4 0.00
499 6 0.00
500 3 0.00
501 3 0.00
502 6 0.00
503 2 0.00
504 1 0.00
506 4 0.00
507 1 0.00
508 1 0.00
509 1 0.00
510 3 0.00
511 5 0.00
513 3 0.00
514 1 0.00
516 43 0.01
517 100 0.03
518 8 0.00
519 1 0.00
520 1 0.00
521 188 0.06
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
ATGTATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAAAGAATAGAAACTGTCACGA
GAATCGATGATTGTCATATTTAAGGAATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAAAATGTGTTTATAATGCCT
AATCACAAAATAAATGAAGATCATTACTGGAATCATGTTTGTCTCATTTGAGGCACGAACTTAGA
CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTTTCCT
AATGAGTTGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
TTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAATAGTGGAAAGAAAACCTTTTCTTGCG
ACCCCAAAGTATCAATGAC
Found at i:620223 original size:45 final size:45
Alignment explanation
Indices: 620159--620245 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
620149 CATCAATGAC
*
620159 ATGCATCCTATTGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
1 ATGCATCCTATTAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
*
620204 ATGCATCCTTTTAAAGGGAATGTGTTCTTGGTTCCCAATCTT
1 ATGCATCCTATTAAAGGGAATGTGTTCTTGGTTCCCAATCTT
620246 AAAAAGAATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (45 bp):
ATGCATCCTATTAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
Found at i:624249 original size:13 final size:13
Alignment explanation
Indices: 624231--624258 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
624221 ATATAAAGAT
624231 CAATGTATCGATA
1 CAATGTATCGATA
624244 CAATGTATCGATA
1 CAATGTATCGATA
624257 CA
1 CA
624259 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:624327 original size:13 final size:13
Alignment explanation
Indices: 624309--624362 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 13
624299 GTATCTTTGC
624309 ATCGATACATTGT
1 ATCGATACATTGT
624322 ATCGATACAACACTTATGT
1 ATCGAT---ACA--T-TGT
624341 ATCGATACATTGT
1 ATCGATACATTGT
624354 ATCGATACA
1 ATCGATACA
624363 ACACTTATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 18 0.51
14 1 0.03
16 6 0.17
18 1 0.03
19 9 0.26
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (13 bp):
ATCGATACATTGT
Found at i:624343 original size:19 final size:19
Alignment explanation
Indices: 624319--624381 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
624309 ATCGATACAT
624319 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
624338 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
624351 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
624370 TGTATCGATACA
1 TGTATCGATACA
624382 TTTACTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
16 6 0.16
18 1 0.03
19 21 0.55
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Done.