Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2001
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25485
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Found at i:1006 original size:17 final size:17
Alignment explanation
Indices: 950--1029 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 17
940 TACGATTATA
950 AAATATAAATATAATAT-
1 AAATA-AAATATAATATG
*
967 AAA-AAAATTAAAATATG
1 AAATAAAA-TATAATATG
* *
984 ACATAAAATATAAGATG
1 AAATAAAATATAATATG
*
1001 AAATAAAAAATAATAT-
1 AAATAAAATATAATATG
* *
1017 AAACATAATATAA
1 AAATAAAATATAA
1030 ACAAAAATAG
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
15 3 0.06
16 18 0.36
17 25 0.50
18 4 0.08
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.26
Consensus pattern (17 bp):
AAATAAAATATAATATG
Found at i:1175 original size:3 final size:3
Alignment explanation
Indices: 1167--1191 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1157 TTAGATGAAT
1167 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
1192 ATGTTCTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1383 original size:20 final size:20
Alignment explanation
Indices: 1345--1383 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1335 ATTTGGAACA
*
1345 TAAGTATATTTGATATTTAT
1 TAAGTATATTTAATATTTAT
*
1365 TAAGTATATTTAATTTTTA
1 TAAGTATATTTAATATTTA
1384 AATTTTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
TAAGTATATTTAATATTTAT
Found at i:1408 original size:16 final size:15
Alignment explanation
Indices: 1389--1429 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
1379 TTTTAAATTT
1389 TTATATATTT-AAAA
1 TTATATATTTAAAAA
1403 TGT-TATATTTAAAAA
1 T-TATATATTTAAAAA
1418 TTA-ATATTTAAA
1 TTATATATTTAAA
1430 TACATATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
TTATATATTTAAAAA
Found at i:1874 original size:2 final size:2
Alignment explanation
Indices: 1869--1893 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1859 AAATATATTT
1869 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1894 GAAATAAGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2744 original size:46 final size:46
Alignment explanation
Indices: 2658--2745 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 46
2648 ATAAAAAAAA
* * *
2658 TTTTAAAATATTTAATATACTCATCAAATATATAATTATATTAAAC
1 TTTTAAAATATTTAATATACCCATCAAATACATAACTATATTAAAC
* * * *
2704 TTTTAAAGTATTTAATATACCCATCAAGTGCATAGCTATATT
1 TTTTAAAATATTTAATATACCCATCAAATACATAACTATATT
2746 TAGCATCGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 35 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (46 bp):
TTTTAAAATATTTAATATACCCATCAAATACATAACTATATTAAAC
Found at i:3043 original size:23 final size:22
Alignment explanation
Indices: 3001--3044 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
2991 TAATAAATGT
*
3001 TATTGTAATCAATTATGATAAA
1 TATTGTAATAAATTATGATAAA
3023 TATTGATAATAAA-TATAGATAA
1 TATTG-TAATAAATTAT-GATAA
3045 CGAAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (22 bp):
TATTGTAATAAATTATGATAAA
Found at i:3466 original size:3 final size:3
Alignment explanation
Indices: 3460--3488 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
3450 CATCAAGAAC
3460 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
3489 ATTCATCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7484 original size:14 final size:13
Alignment explanation
Indices: 7465--7503 Score: 62
Period size: 12 Copynumber: 3.0 Consensus size: 13
7455 AACATGATGT
7465 AAAATATAATATA
1 AAAATATAATATA
7478 AAAA-ATAATATA
1 AAAATATAATATA
7490 AAAATATTAATATA
1 AAAATA-TAATATA
7504 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.50
13 5 0.21
14 7 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATATAATATA
Found at i:7501 original size:17 final size:17
Alignment explanation
Indices: 7481--7533 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
7471 TAATATAAAA
7481 AATAATATAAAAATATT
1 AATAATATAAAAATATT
*
7498 AAT-ATATTAAAAT-TT
1 AATAATATAAAAATATT
*
7513 -ATATTATAAAAATTATT
1 AATAATATAAAAA-TATT
7530 AATA
1 AATA
7534 TGTTAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
14 2 0.07
15 9 0.31
16 10 0.34
17 5 0.17
18 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATAATATAAAAATATT
Found at i:7502 original size:31 final size:31
Alignment explanation
Indices: 7467--7539 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 31
7457 CATGATGTAA
7467 AATATAATATAAAA-AATAATATAAAAA-TATT
1 AATAT-AT-TAAAATAATAATATAAAAATTATT
* *
7498 AATATATTAAAATTTATATTATAAAAATTATT
1 AATATATTAAAA-TAATAATATAAAAATTATT
*
7530 AATATGTTAA
1 AATATATTAA
7540 TTTATATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 5 0.14
30 2 0.06
31 16 0.44
32 13 0.36
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (31 bp):
AATATATTAAAATAATAATATAAAAATTATT
Found at i:7526 original size:15 final size:15
Alignment explanation
Indices: 7485--7526 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
7475 ATAAAAAATA
7485 ATATAAAAATATTAAT
1 ATATAAAAAT-TTAAT
*
7501 ATATTAAAATTT-AT
1 ATATAAAAATTTAAT
7515 ATTATAAAAATT
1 A-TATAAAAATT
7527 ATTAATATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 3 0.13
15 11 0.48
16 9 0.39
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATAAAAATTTAAT
Found at i:7534 original size:32 final size:29
Alignment explanation
Indices: 7486--7546 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 29
7476 TAAAAAATAA
7486 TATAAAAATATTAATATATTAAAATTTATAT
1 TATAAAAATATTAATATATT--AATTTATAT
*
7517 TATAAAAATTATTAATATGTTAATTTATAT
1 TATAAAAA-TATTAATATATTAATTTATAT
7547 AAATACATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 9 0.32
31 8 0.29
32 11 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
TATAAAAATATTAATATATTAATTTATAT
Found at i:10013 original size:18 final size:18
Alignment explanation
Indices: 9922--10014 Score: 57
Period size: 18 Copynumber: 5.0 Consensus size: 18
9912 TTATCAATTT
*
9922 TAATTTAAA-TTAAAAAA
1 TAATTTAAATTTAAAATA
* *
9939 TTAATTT-AATTCAATAAAA
1 -TAATTTAAATTTAA-AATA
* *
9958 AAATTAATAATTTAAAATCAA
1 TAATTTA-AATTTAAAAT--A
*
9979 TCAAATTAAA-TTAAAATA
1 T-AATTTAAATTTAAAATA
9997 TAATTTAAATTTAAAATA
1 TAATTTAAATTTAAAATA
10015 AATCAAACTC
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
17 9 0.16
18 23 0.40
19 6 0.10
20 13 0.22
21 3 0.05
22 4 0.07
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATTTAAATTTAAAATA
Found at i:11507 original size:19 final size:17
Alignment explanation
Indices: 11483--11522 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
11473 TTTGCTTTAG
11483 ATTTAATTATTTAATATAT
1 ATTTAA-TATTT-ATATAT
*
11502 ATTTAATATTTTTATAT
1 ATTTAATATTTATATAT
11519 ATTT
1 ATTT
11523 TTAAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 5 0.25
19 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTAATATTTATATAT
Found at i:11525 original size:19 final size:19
Alignment explanation
Indices: 11496--11532 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11486 TAATTATTTA
*
11496 ATATATATTTAATATTTTT
1 ATATATATTTAAAATTTTT
*
11515 ATATATTTTTAAAATTTT
1 ATATATATTTAAAATTTT
11533 AAAAAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
ATATATATTTAAAATTTTT
Found at i:12287 original size:23 final size:21
Alignment explanation
Indices: 12261--12303 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
12251 TTTTTCCGTA
*
12261 TAAAATTTAAGTAGTTTTTTTAG
1 TAAAAATT-AGTA-TTTTTTTAG
12284 TAAAAATTAGTATTTTTTTA
1 TAAAAATTAGTATTTTTTTA
12304 AAATAAACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.53
Consensus pattern (21 bp):
TAAAAATTAGTATTTTTTTAG
Found at i:12854 original size:3 final size:3
Alignment explanation
Indices: 12846--12874 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
12836 ATCAACCATA
12846 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
12875 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:19107 original size:13 final size:13
Alignment explanation
Indices: 19089--19176 Score: 62
Period size: 13 Copynumber: 6.8 Consensus size: 13
19079 AATTATAAAA
19089 ATAAAAATATAAT
1 ATAAAAATATAAT
19102 ATAAAAA-ATAAT
1 ATAAAAATATAAT
19114 -T-AAAATATAAT
1 ATAAAAATATAAT
*
19125 ATTTAAATAATATCAT
1 A--TAAA-AATATAAT
*
19141 A-AAATAATCT-AT
1 ATAAA-AATATAAT
19153 AT-AAAATATGAAT
1 ATAAAAATAT-AAT
*
19166 ATATAAATATA
1 ATAAAAATATA
19177 TCAAATATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
10 4 0.07
11 10 0.16
12 10 0.16
13 20 0.33
14 7 0.11
15 2 0.03
16 8 0.13
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.34
Consensus pattern (13 bp):
ATAAAAATATAAT
Found at i:19109 original size:20 final size:23
Alignment explanation
Indices: 19074--19190 Score: 77
Period size: 24 Copynumber: 5.0 Consensus size: 23
19064 TATTAACCCT
19074 AATATAAT-TATAAAAAT-A-AA
1 AATATAATATATAAAAATAATAA
19094 AATATAATATA-AAAAATAATTAA
1 AATATAATATATAAAAATAA-TAA
*
19117 AATATAATATTTAAATAAT-ATCATA
1 AATATAATATATAAA-AATAAT-A-A
*
19142 AA-ATAATCTATATAAAAT-ATGAA
1 AATATAATATATA-AAAATAAT-AA
* *
19165 TATATAAATATATCAAATATAATAA
1 AATAT-AATATAT-AAAAATAATAA
19190 A
1 A
19191 TTATTAAATT
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
20 14 0.18
21 3 0.04
23 15 0.20
24 21 0.28
25 20 0.26
26 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (23 bp):
AATATAATATATAAAAATAATAA
Found at i:19117 original size:11 final size:12
Alignment explanation
Indices: 19089--19148 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 12
19079 AATTATAAAA
19089 ATAAAAATATAAT
1 ATAAAAA-ATAAT
19102 ATAAAAAATAAT
1 ATAAAAAATAAT
*
19114 -TAAAATATAAT
1 ATAAAAAATAAT
**
19125 AT-TTAAATAAT
1 ATAAAAAATAAT
*
19136 ATCATAAAATAAT
1 AT-AAAAAATAAT
19149 CTATATAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
11 18 0.46
12 6 0.15
13 15 0.38
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAAAAAATAAT
Found at i:19191 original size:9 final size:8
Alignment explanation
Indices: 19150--19191 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
19140 TAAAATAATC
19150 TATATAAA
1 TATATAAA
*
19158 -ATATGAA
1 TATATAAA
19165 TATATAAA
1 TATATAAA
19173 TATATCAAA
1 TATAT-AAA
19182 TATAATAAA
1 TAT-ATAAA
19191 T
1 T
19192 TATTAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
7 6 0.21
8 11 0.38
9 10 0.34
10 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (8 bp):
TATATAAA
Found at i:19199 original size:17 final size:17
Alignment explanation
Indices: 19150--19191 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
19140 TAAAATAATC
*
19150 TATATAAA-ATAT-GAA
1 TATATAAATATATCAAA
19165 TATATAAATATATCAAA
1 TATATAAATATATCAAA
19182 TATAATAAAT
1 TAT-ATAAAT
19192 TATTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 8 0.35
16 4 0.17
17 5 0.22
18 6 0.26
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TATATAAATATATCAAA
Found at i:20382 original size:29 final size:29
Alignment explanation
Indices: 20316--20382 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
20306 ATGAAAAATT
*
20316 AATTAAAATATGAAATAAAATATATGTAC
1 AATTAAAATATAAAATAAAATATATGTAC
20345 AA-TATAAATATAAAAT-AAATATATGAATA-
1 AATTA-AAATATAAAATAAAATATATG--TAC
20374 AATTAAAAT
1 AATTAAAAT
20383 TTATTTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
28 11 0.33
29 18 0.55
30 4 0.12
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (29 bp):
AATTAAAATATAAAATAAAATATATGTAC
Found at i:20444 original size:13 final size:15
Alignment explanation
Indices: 20421--20458 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
20411 AAATTCAAAA
20421 AAAATATAATT-T-TT
1 AAAA-ATAATTATATT
20435 AAAAATAATTATATT
1 AAAAATAATTATATT
20450 AAAAATAAT
1 AAAAATAAT
20459 AAAAATATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.27
14 5 0.23
15 11 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAAATAATTATATT
Found at i:21293 original size:19 final size:19
Alignment explanation
Indices: 21269--21308 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
21259 TAATATTAAA
21269 TATTTAAA-ATTTTAAAAAT
1 TATTTAAATA-TTTAAAAAT
*
21288 TATTTATATATTTAAAAAT
1 TATTTAAATATTTAAAAAT
21307 TA
1 TA
21309 AAAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTTAAATATTTAAAAAT
Found at i:21298 original size:27 final size:25
Alignment explanation
Indices: 21268--21328 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
21258 TTAATATTAA
* **
21268 ATATTTAAAATTTTAAAAATTATTTAT
1 ATATTTAAAA-ATTAAAAATTAAAT-T
21295 ATATTTAAAAATTAAAAATTAAATT
1 ATATTTAAAAATTAAAAATTAAATT
21320 ATATTTAAA
1 ATATTTAAA
21329 TAATCATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 10 0.32
26 11 0.35
27 10 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
ATATTTAAAAATTAAAAATTAAATT
Found at i:21528 original size:14 final size:14
Alignment explanation
Indices: 21509--21573 Score: 64
Period size: 14 Copynumber: 4.6 Consensus size: 14
21499 TTAATAATTT
21509 TTATATTTTTTATA
1 TTATATTTTTTATA
21523 TTATATTAATTTTA-A
1 TTATATT--TTTTATA
21538 -TATA-TTTTTATA
1 TTATATTTTTTATA
*
21550 TTTATATTTTTTTTA
1 -TTATATTTTTTATA
*
21565 TTATCTTTT
1 TTATATTTT
21574 CTGTTGTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
11 5 0.12
12 1 0.02
13 1 0.02
14 23 0.53
15 8 0.19
16 5 0.12
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATATTTTTTATA
Found at i:21554 original size:28 final size:26
Alignment explanation
Indices: 21503--21557 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 26
21493 ATAAATTTAA
*
21503 TAATTTTTATATTTTTTATATTATAT
1 TAATTTTAATATTTTTTATATTATAT
21529 TAATTTTAATATATTTTTATATTTATAT
1 TAATTTTAATAT-TTTTTATA-TTATAT
21557 T
1 T
21558 TTTTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 11 0.42
27 8 0.31
28 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (26 bp):
TAATTTTAATATTTTTTATATTATAT
Found at i:21563 original size:28 final size:26
Alignment explanation
Indices: 21505--21573 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 26
21495 AAATTTAATA
21505 ATTTTT-ATATTTTTTATATTATATT
1 ATTTTTAATATTTTTTATATTATATT
*
21530 AATTTTAATATATTTTTATATTTATATT
1 ATTTTTAATAT-TTTTTATA-TTATATT
* * *
21558 TTTTTTATTATCTTTT
1 ATTTTTAATATTTTTT
21574 CTGTTGTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 5 0.14
26 4 0.11
27 12 0.33
28 15 0.42
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (26 bp):
ATTTTTAATATTTTTTATATTATATT
Done.