Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2005
Parameters: 2 7 7 80 10 50 1000
Length:  27503

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2124--2154
15
2.1
15
93
0
53
12
22
16
48
1.80
3958--4002
21
2.1
21
84
8
56
22
20
4
53
1.63
6227--6252
13
2.0
13
100
0
52
30
15
15
38
1.88
7257--8009
381
2.0
376
81
5
869
34
13
19
32
1.91
7638--11342
476
7.7
476
80
5
3947
35
14
18
32
1.91
10986--11720
382
1.9
382
80
7
859
35
13
18
32
1.89
11378--13528
477
4.5
474
85
2
2694
35
14
17
31
1.91
13883--13935
19
2.7
20
85
8
72
43
15
13
28
1.84
16146--16195
21
2.3
21
80
10
57
56
4
18
22
1.58
17789--17814
13
2.0
13
100
0
52
38
15
15
30
1.88
20028--20075
22
2.3
22
85
7
64
52
4
20
22
1.64
23966--23991
13
2.0
13
100
0
52
30
15
15
38
1.88
24112--24157
21
2.2
20
81
11
58
32
19
4
43
1.71
25643--25842
79
2.5
79
81
4
197
29
17
29
24
1.97
25797--25868
28
2.6
28
88
0
99
23
19
34
22
1.96
25857--26404
52
10.4
52
65
18
188
31
13
25
29
1.93
25858--26237
104
3.6
103
73
12
369
32
13
25
28
1.94
26013--26081
27
2.5
28
86
9
97
23
21
30
24
1.99
25790--26402
211
2.9
211
92
1
971
31
13
26
28
1.94
26224--26292
27
2.5
27
86
6
86
23
21
28
26
1.99
26283--26409
51
2.4
51
79
10
139
34
10
23
31
1.88

Tables:   1

The End!