Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2009
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39610
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Found at i:2853 original size:28 final size:28
Alignment explanation
Indices: 2813--2884 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2803 GGAATAAAGC
** *
2813 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2841 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2869 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2885 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:2942 original size:52 final size:50
Alignment explanation
Indices: 2873--3042 Score: 182
Period size: 52 Copynumber: 3.3 Consensus size: 50
2863 AAATAACGAG
* * *
2873 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGT-GTTTT-GAAATAAAACCGGA
** * *
2925 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTG-AAATAAAACC-GGA
*
2978 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTT-AACGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGAA--ATAAAACCGGA
3029 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
3043 TCGAAAATAA
Statistics
Matches: 99, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
50 2 0.02
51 4 0.04
52 81 0.82
53 12 0.12
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAATAAAACCGGA
Found at i:3059 original size:27 final size:28
Alignment explanation
Indices: 3016--3095 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 28
3006 AGTGTTTTAA
* *
3016 CGATAAA-ACCGGAGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTGGAGTATCCCC
3043 TCGA-AAATAAC-GGGTTGGAGTAT-CCC
1 -CGATAAATAACGGGGTTGGAGTATCCCC
* *
3069 CGATGATTAACGGGGTTGGAGTATCCC
1 CGATAAATAACGGGGTTGGAGTATCCC
3096 GATTGTGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
25 3 0.07
26 8 0.18
27 26 0.59
28 7 0.16
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (28 bp):
CGATAAATAACGGGGTTGGAGTATCCCC
Found at i:5529 original size:13 final size:13
Alignment explanation
Indices: 5511--5536 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5501 ACAAAGATCC
5511 ATGTATCGATACA
1 ATGTATCGATACA
5524 ATGTATCGATACA
1 ATGTATCGATACA
5537 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5532 original size:33 final size:33
Alignment explanation
Indices: 5490--5556 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5480 AAAATTTCCA
***
5490 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
5523 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
5556 A
1 A
5557 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:5600 original size:19 final size:18
Alignment explanation
Indices: 5576--5643 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
5566 CAGTAGCTAA
5576 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
5595 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
5610 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
5627 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
5644 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:5616 original size:13 final size:13
Alignment explanation
Indices: 5598--5622 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5588 ACAATACTTA
5598 TGTATCGATACAT
1 TGTATCGATACAT
5611 TGTATCGATACA
1 TGTATCGATACA
5623 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5620 original size:32 final size:32
Alignment explanation
Indices: 5579--5641 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
5569 TAGCTAATTA
*
5579 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
5611 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
5642 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:5723 original size:21 final size:21
Alignment explanation
Indices: 5699--5755 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
5689 CATTTGTAGG
5699 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
5720 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
5741 ATGTATCGATACATT
1 ATGTATCGATACATT
5756 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:6076 original size:27 final size:27
Alignment explanation
Indices: 6010--6660 Score: 519
Period size: 27 Copynumber: 21.7 Consensus size: 27
6000 AGGAGAAAGA
6010 TGCCACGGAGTTGTGGACTTAAAAAGAACAAGG
1 TGCCACGGAGTTGTGGACTT-AAAAG-----GG
*
6043 CGCCACGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
6070 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
*
6102 AATGCCACGGAGTTGTGGGCTTAAAAGGG
1 --TGCCACGGAGTTGTGGACTTAAAAGGG
*
6131 TGCCACAGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
6158 TGCCACGGAGTTATGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----G-G
* *
6192 TGCCACAGAGTTGTGGGCTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGG
*
6220 TGCCACGGAGTTGTGGACTTAAAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
6247 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----G-G
* *
6281 TGCCACAGAGTTGTGGGCTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGG
6309 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
* *
6342 TGTCACGGAGTTGTGGACTTAAAAGAAAAAAGAA
1 TGCCACGGAGTTGTGGACTTAAAAG------G-G
6376 TGCCACGGAGTTGTGGACTTAAAAGGAATAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
*
6409 TGCCACGGAGTTGTGGACTTAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
6436 TACCACGGAGTTGTGGGCTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGG
* *
6464 TGCCACGGAGTTGTGGGCTTTAAAAGAG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGG
*
6492 TGCCACGAAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
6519 TGCCACAGAGTTGTGGACTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGG
* *
6547 TGCCACAGAGTTGTCGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
*
6580 TGCCACGAAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
6612 AATGCCACGGAGTTGTGGACTTAAAAGGG
1 --TGCCACGGAGTTGTGGACTTAAAAGGG
**
6641 TGCCACGGAGTCATGGACTT
1 TGCCACGGAGTTGTGGACTT
6661 TGAGAAGATA
Statistics
Matches: 529, Mismatches: 42, Indels: 100
0.79 0.06 0.15
Matches are distributed among these distances:
27 178 0.34
28 113 0.21
29 4 0.01
32 10 0.02
33 98 0.19
34 113 0.21
35 13 0.02
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:6225 original size:28 final size:27
Alignment explanation
Indices: 6185--6660 Score: 376
Period size: 28 Copynumber: 16.0 Consensus size: 27
6175 CTTAAAAGGA
* * *
6185 AAAAGAGTGCCACAGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
6213 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
6240 AAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
6267 AAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 AAAA-G-----G-GTGCCACGGAGTTGTGGAC-TT
6302 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
6329 AAAAGGAACAAGGTGTCACGGAGTTGTGGACTT
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTT
*
6362 AAAAGAAAAAAGAATGCCACGGAGTTGTGGACTT
1 AAAAG------G-GTGCCACGGAGTTGTGGACTT
6396 AAAAGGAATAAGGTGCCACGGAGTTGTGGACTT
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTT
* * *
6429 AAAAGGATACCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
*
6457 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
6485 AAAAGAGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
6512 AAAAGGGTGCCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
6540 AAAAGGGTGCCACAGAGTTGTCGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
6567 AAAAGGAACAAGGTGCCACGAAGTTGTGGACTT
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTT
6600 AAAAGGAAAAAGAATGCCACGGAGTTGTGGACTT
1 AAAAGG-----G--TGCCACGGAGTTGTGGACTT
**
6634 AAAAGGGTGCCACGGAGTCATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
6661 TGAGAAGATA
Statistics
Matches: 383, Mismatches: 33, Indels: 65
0.80 0.07 0.14
Matches are distributed among these distances:
27 104 0.27
28 117 0.31
29 2 0.01
32 4 0.01
33 78 0.20
34 71 0.19
35 7 0.02
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.21
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:6257 original size:89 final size:89
Alignment explanation
Indices: 5987--6545 Score: 663
Period size: 89 Copynumber: 6.2 Consensus size: 89
5977 TGCCACTAAC
* * * * *
5987 TTGTGGGCTTAAAAGGAGAAAGA-TGCCACGGAGTTGTGGACTTAAAAAGAACAAGGCGCCACGG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG-----GGTGCCACGG
*
6051 AGTTGTGGACTTAAAAGGGTGCCACGGAG
61 AGTTGTGGACTTAAAAAGGTGCCACGGAG
* *
6080 TTGTGGACTTAAAAGGAAAAAGAATGCCACGGAGTTGTGGGC-TTAAAAGGGTGCCACAGAGTTG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTG
*
6144 TGGACTTAAAAGGGTGCCACGGAG
66 TGGACTTAAAAAGGTGCCACGGAG
* *
6168 TTATGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTG
6233 TGGACTTAAAAAGGTGCCACGGAG
66 TGGACTTAAAAAGGTGCCACGGAG
*
6257 TTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTG
*
6322 TGGACTTAAAAGGAACAAGGTGTCACGGAG
66 TGGACTT---A--AA-AAGGTGCCACGGAG
* * *
6352 TTGTGGACTTAAAAGAAAAAAGAATGCCACGGAGTTGTGGAC-TTAAAAGGAATAAGGTGCCACG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-G-----GGTGCCACG
*
6416 GAGTTGTGGACTT-AAAAGGATACCACGGAG
60 GAGTTGTGGACTTAAAAAGG-TGCCACGGAG
* * *
6446 TTGTGGGCTTTAAAA-G-----G-GTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGAAGTT
1 TTGTGGAC-TTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTT
* *
6504 GTGGACTTAAAAGGGTGCCACAGAG
65 GTGGACTTAAAAAGGTGCCACGGAG
6529 TTGTGGACTTTAAAAGG
1 TTGTGGAC-TTAAAAGG
6546 GTGCCACAGA
Statistics
Matches: 418, Mismatches: 29, Indels: 47
0.85 0.06 0.10
Matches are distributed among these distances:
83 42 0.10
84 6 0.01
88 94 0.22
89 122 0.29
92 1 0.00
93 31 0.07
94 42 0.10
95 58 0.14
100 22 0.05
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.21
Consensus pattern (89 bp):
TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTG
TGGACTTAAAAAGGTGCCACGGAG
Found at i:6532 original size:238 final size:237
Alignment explanation
Indices: 6005--6660 Score: 820
Period size: 238 Copynumber: 2.7 Consensus size: 237
5995 TTAAAAGGAG
* * * * * *
6005 AAAGATGCCACGGAGTTGTGGACTTAAAAAGAACAAGGCGCCACGGAGTTGTGGAC-TTAAAAGG
1 AAAGGTGCCACGAAGTTGTGGACTT-AAAAGGA-GA-GTGCCACAGAGTTGTGGACTTTAAAAGG
* * *
6069 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAATGCCACGGAGTTGTGGGCTTAAAAG-----
63 GTGCCACGGAGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGAGTTGTGGACTTAAAAGAAAAA
* *
6129 G-GTGCCACAGAGTTGTGGACTTAAAA-GGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAG
127 GAATGCCACGGAGTTGTGGACTTAAAAGGGGTGCCACGGAGTTATGGACTTAAAAGG----AGAG
*
6192 TGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
188 TACCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
* *
6242 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAG
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGG----AGAGTGCCACAGAGTTGTGGACTTTAAAAG
*
6307 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGTCACGGAGTTGTGGACTTAAAAGAAAAA
62 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAG-AAAA
*
6372 AGAATGCCACGGAGTTGTGGACTTAAAAGGAATAAGGTGCCACGGAGTTGTGGACTTAAAA-G-G
126 AGAATGCCACGGAGTTGTGGACTTAAAAGG-----GGTGCCACGGAGTTATGGACTTAAAAGGAG
* * *
6435 A-TACCACGGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTA
186 AGTACCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
6486 AAAGAGTGCCACGAAGTTGTGGACTTAAAA-G-G-GTGCCACAGAGTTGTGGACTTTAAAAGGGT
1 AAAG-GTGCCACGAAGTTGTGGACTTAAAAGGAGAGTGCCACAGAGTTGTGGACTTTAAAAGGGT
* * *
6548 GCCACAGAGTTGTCGACTTAAAAGGAACAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGA
65 GCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAGA
*
6613 ATGCCACGGAGTTGTGGACTTAAAA-GGGTGCCACGGAGTCATGGACTT
129 ATGCCACGGAGTTGTGGACTTAAAAGGGGTGCCACGGAGTTATGGACTT
6661 TGAGAAGATA
Statistics
Matches: 374, Mismatches: 25, Indels: 45
0.84 0.06 0.10
Matches are distributed among these distances:
232 20 0.05
236 5 0.01
237 25 0.07
238 152 0.41
239 43 0.11
240 1 0.00
244 52 0.14
245 49 0.13
246 1 0.00
250 1 0.00
251 25 0.07
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.21
Consensus pattern (237 bp):
AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAGAGTGCCACAGAGTTGTGGACTTTAAAAGGGTG
CCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGAAAAAGAAT
GCCACGGAGTTGTGGACTTAAAAGGGGTGCCACGGAGTTATGGACTTAAAAGGAGAGTACCACAG
AGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAA
Found at i:6623 original size:272 final size:266
Alignment explanation
Indices: 5974--6638 Score: 786
Period size: 272 Copynumber: 2.5 Consensus size: 266
5964 AGGTGTCTAC
* * *
5974 AGGTGCCACTA-ACTTGTGGGCTTAAAAGGAGAAAGATGCCACGGAGTTGTGGACTTAAAAAGAA
1 AGGTGCCAC-AGAGTTGTGGACTTAAAAGGAG--AG-TGCCACAGAGTTGTGGACTT-AAAAGAA
* *
6038 CAAGGCGCCACGGAGTTGTGGACTTAAAAGG----GTGCCACGGAGTTGTGGACTTAAAAGGAAA
61 CAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGTGCCACGGAGTTGTGGACTTAAAAGAAAA
* * *
6099 AAGAATGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCAC
126 AAGAATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATACCAC
* *
6164 GGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGA
191 GGAGTTATGGACTTAAAAGG----AGAGTGCCACAGAGTTGTGGGCTTTAAAAGAGTGCCACGAA
6229 GTTGTGGACTTAAAA
252 GTTGTGGACTTAAAA
* *
6244 AGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAG--
1 AGGTGCCACAGAGTTGTGGACTTAAAAGG----AGAGTGCCACAGAGTTGTGGAC-TTAAAAGAA
*
6307 ---GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGTCACGGAGTTGTGGACTTAAAAGAA
61 CAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA-AA-GTGCCACGGAGTTGTGGACTTAAAAGAA
*
6369 AAAAGAATGCCACGGAGTTGTGGACTTAAAAGGAATAAGGTGCCACGGAGTTGTGGACTTAAAAG
124 AAAAGAATGCCACGGAGTTGTGGACTTAAAA-G-----GGTGCCACAGAGTTGTGGACTTAAAAG
* * *
6434 GATACCACGGAGTTGTGGGCTTTAAAA-G-G-GTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCC
183 GATACCACGGAGTTATGGAC-TTAAAAGGAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAGTGCC
6496 ACGAAGTTGTGGACTTAAAA
247 ACGAAGTTGTGGACTTAAAA
* *
6516 GGGTGCCACAGAGTTGTGGACTTTAAAA-G-G-GTGCCACAGAGTTGTCGACTTAAAAGGAACAA
1 AGGTGCCACAGAGTTGTGGAC-TTAAAAGGAGAGTGCCACAGAGTTGTGGACTTAAAA-GAACAA
*
6578 GGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAATGCCACGGAGTTGTGGACTTAAAAG
64 GGTGCCACGGAGTTGTGGACTTAAAAGG-AAAAG--TGCCACGGAGTTGTGGACTTAAAAG
6639 GGTGCCACGG
Statistics
Matches: 343, Mismatches: 23, Indels: 56
0.81 0.05 0.13
Matches are distributed among these distances:
265 6 0.02
266 45 0.13
267 1 0.00
270 26 0.08
271 50 0.15
272 156 0.45
273 8 0.02
274 2 0.01
278 43 0.13
279 6 0.02
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (266 bp):
AGGTGCCACAGAGTTGTGGACTTAAAAGGAGAGTGCCACAGAGTTGTGGACTTAAAAGAACAAGG
TGCCACGGAGTTGTGGACTTAAAAGGAAAAGTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGAA
TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATACCACGGAGT
TATGGACTTAAAAGGAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAGTGCCACGAAGTTGTGGAC
TTAAAA
Found at i:7891 original size:16 final size:15
Alignment explanation
Indices: 7866--7895 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7856 GCACTCTCTC
7866 TTTTTTTTTTGTTTT
1 TTTTTTTTTTGTTTT
7881 TTTTGTTTTTTGTTT
1 TTTT-TTTTTTGTTT
7896 GTGTGTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTGTTTT
Found at i:14280 original size:20 final size:20
Alignment explanation
Indices: 14227--14281 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
14217 AAATTCCCAG
**
14227 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
14247 ATGTATCGATACATTGAGT-A
1 ATGTATCGATACATTGA-TCA
14267 ATGTATCGATACATT
1 ATGTATCGATACATT
14282 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:14335 original size:19 final size:20
Alignment explanation
Indices: 14311--14363 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
14301 AGCGATACAT
14311 TGTATCGATACAACACT-TA
1 TGTATCGATACAACACTGTA
* *
14330 TGTATCGATACAGATACTGTT
1 TGTATCGATACA-ACACTGTA
14351 TGTATCGATACAA
1 TGTATCGATACAA
14364 ATTGTTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 12 0.40
20 5 0.17
21 13 0.43
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (20 bp):
TGTATCGATACAACACTGTA
Found at i:17334 original size:51 final size:51
Alignment explanation
Indices: 17275--17444 Score: 136
Period size: 51 Copynumber: 3.2 Consensus size: 51
17265 ATCCCTTCAT
17275 AATAGGGTTGGAGTATCTCCGAGATGAAAAATTTAATATTTTAAAAATAAA
1 AATAGGGTTGGAGTATCTCCGAGATGAAAAATTTAATATTTTAAAAATAAA
* * *
17326 AATAGGGTTGGAGTATCCCCTTGAAAAT-AAAAAGGTTGGT-ATATCCGCTTAAAAAT---
1 AATAGGGTTGGAGTATCTCC--G-AGATGAAAAA--TT--TAATAT---TTTAAAAATAAA
* * *
17382 AATGGGGTTAGAGTAT-TCTCGAGATGAAAAATTTAATATTTTGAAAATAAA
1 AATAGGGTTGGAGTATCTC-CGAGATGAAAAATTTAATATTTTAAAAATAAA
*
17433 AATGGGGTTGGA
1 AATAGGGTTGGA
17445 ATATTCTCTC
Statistics
Matches: 93, Mismatches: 10, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
48 7 0.08
50 1 0.01
51 34 0.37
52 2 0.02
53 9 0.10
54 9 0.10
55 3 0.03
56 19 0.20
57 1 0.01
59 8 0.09
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (51 bp):
AATAGGGTTGGAGTATCTCCGAGATGAAAAATTTAATATTTTAAAAATAAA
Found at i:17341 original size:75 final size:76
Alignment explanation
Indices: 17204--17344 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 76
17194 ATAAAAACAA
*
17204 GGTTAGAGTATCCCCAAGATGAAAAATTTTAATATTTCGAAAATAAAAATGGGATTGAAGTATCC
1 GGTTAGAGTATCCCCAAGATGAAAAATTTTAATATTTCAAAAATAAAAATGGGATTGAAGTATCC
17269 CTTCATAATAG
66 CTTCATAATAG
* * * * *
17280 GGTTGGAGTATCTCCGAGATGAAAAA-TTTAATATTTTAAAAATAAAAATAGGG-TTGGAGTATC
1 GGTTAGAGTATCCCCAAGATGAAAAATTTTAATATTTCAAAAATAAAAAT-GGGATTGAAGTATC
17343 CC
65 CC
17345 CTTGAAAATA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 32 0.55
76 26 0.45
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (76 bp):
GGTTAGAGTATCCCCAAGATGAAAAATTTTAATATTTCAAAAATAAAAATGGGATTGAAGTATCC
CTTCATAATAG
Found at i:17567 original size:158 final size:155
Alignment explanation
Indices: 17378--17713 Score: 419
Period size: 158 Copynumber: 2.1 Consensus size: 155
17368 ATCCGCTTAA
* * * *
17378 AAATAATGGGGTTAGAGTATTCTCGAGATGAAAAATTTAATATTTTGAAAATAAAAATGGGGTTG
1 AAATAAT-GGGTTGGAGTATCCACGAGATGAAAAATTTAATATTTT-AAAATAAAAACGGGGTTG
* ** *
17443 GAATATTCTCTCAAAAATAATGGGGTTAG-AGTA-CCTTGAGATAAAAATTTTAATATTTT-AGA
64 GAATATCCTCTCAAAAATAACAGGGTT-GCAATACCCTTGAGATAAAAATTTTAATATTTTGA-A
**
17505 AATAAAAAATGATG-TTGGAGTATCACCTTGG
127 AAT-AAAAATGA-GATT-GAGTATCACCTCAG
*
17536 AAATAATAGGGTTGGAGTATCCACGAGATGAAAATTTTAATATTTTAAAATAAAAACGGGGTTGG
1 AAATAAT-GGGTTGGAGTATCCACGAGATGAAAAATTTAATATTTTAAAATAAAAACGGGGTTGG
* * * *
17601 AGTATCCTCTCGAAAATAACAGGGTTGCAATACCCTTTAGATGAAAATTTTAATATTTTGAAAAT
65 AATATCCTCTCAAAAATAACAGGGTTGCAATACCCTTGAGATAAAAATTTTAATATTTTGAAAAT
*
17666 AAAAATGAGATTGAGTATCCCCTCAG
130 AAAAATGAGATTGAGTATCACCTCAG
17692 AAATAATGAGGTTGGAGTATCC
1 AAATAATG-GGTTGGAGTATCC
17714 TTTCGAAAAT
Statistics
Matches: 156, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
155 1 0.01
156 33 0.21
157 52 0.33
158 69 0.44
159 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (155 bp):
AAATAATGGGTTGGAGTATCCACGAGATGAAAAATTTAATATTTTAAAATAAAAACGGGGTTGGA
ATATCCTCTCAAAAATAACAGGGTTGCAATACCCTTGAGATAAAAATTTTAATATTTTGAAAATA
AAAATGAGATTGAGTATCACCTCAG
Found at i:17625 original size:78 final size:79
Alignment explanation
Indices: 17377--17714 Score: 348
Period size: 78 Copynumber: 4.3 Consensus size: 79
17367 TATCCGCTTA
* * * * *
17377 AAAATAATGGGGTTAGAGTATTCTCGAGATGAAAAATTTAATATTTTGAAAATAAAAATGGGGTT
1 AAAATAATAGGGTTGGAGTATCCTCGAGATGAAAATTTTAATATTTTGAAAATAAAAATGAGGTT
* * *
17442 GGAATATTCTCTCA
66 GGAGTATCCTCTCG
* * * * *
17456 AAAATAATGGGGTTAGAGTA-CCTTGAGATAAAAATTTTAATATTTT-AGAAATAAAAAATGATG
1 AAAATAATAGGGTTGGAGTATCCTCGAGATGAAAATTTTAATATTTTGA-AAAT-AAAAATGAGG
*
17519 TTGGAGTATCAC-CTTG
64 TTGGAGTATC-CTCTCG
* * * *
17535 GAAATAATAGGGTTGGAGTATCCACGAGATGAAAATTTTAATATTTT-AAAATAAAAACGGGGTT
1 AAAATAATAGGGTTGGAGTATCCTCGAGATGAAAATTTTAATATTTTGAAAATAAAAATGAGGTT
17599 GGAGTATCCTCTCG
66 GGAGTATCCTCTCG
* * * * ** *
17613 AAAATAACAGGGTTGCAATACCCTTTAGATGAAAATTTTAATATTTTGAAAATAAAAATGAGATT
1 AAAATAATAGGGTTGGAGTATCCTCGAGATGAAAATTTTAATATTTTGAAAATAAAAATGAGGTT
*
17678 -GAGTATCCCCTC-
66 GGAGTATCCTCTCG
17690 AGAAATAAT-GAGGTTGGAGTATCCT
1 A-AAATAATAG-GGTTGGAGTATCCT
17715 TTCGAAAATA
Statistics
Matches: 215, Mismatches: 36, Indels: 17
0.80 0.13 0.06
Matches are distributed among these distances:
77 4 0.02
78 113 0.53
79 73 0.34
80 25 0.12
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (79 bp):
AAAATAATAGGGTTGGAGTATCCTCGAGATGAAAATTTTAATATTTTGAAAATAAAAATGAGGTT
GGAGTATCCTCTCG
Found at i:17721 original size:27 final size:29
Alignment explanation
Indices: 17669--17743 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 29
17659 TGAAAATAAA
*
17669 AATGAGATT-GAGTATCCCCTCAG-AAAT
1 AATGAGGTTGGAGTATCCCCTCAGAAAAT
**
17696 AATGAGGTTGGAGTATCCTTTC-GAAAAT
1 AATGAGGTTGGAGTATCCCCTCAGAAAAT
* *
17724 AATGGGGTTGAAGTATCCCC
1 AATGAGGTTGGAGTATCCCC
17744 GAGATGTGGA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 9 0.23
28 30 0.77
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (29 bp):
AATGAGGTTGGAGTATCCCCTCAGAAAAT
Found at i:20272 original size:31 final size:31
Alignment explanation
Indices: 20234--20309 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
20224 TACAATGAAA
* *
20234 AATGTATCAATACATTTAGGTTAAAACCTAG
1 AATGTATCGATACATTTAGGTTAAAACCAAG
*
20265 AATGTATCGATACATTTGGGTTAAAACCAAG
1 AATGTATCGATACATTTAGGTTAAAACCAAG
20296 AATGTATCGATACA
1 AATGTATCGATACA
20310 CTGATAAATG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (31 bp):
AATGTATCGATACATTTAGGTTAAAACCAAG
Found at i:32448 original size:97 final size:97
Alignment explanation
Indices: 32305--32539 Score: 321
Period size: 97 Copynumber: 2.4 Consensus size: 97
32295 GTGGAAAATG
* * * *
32305 GGGTTGG-GTATTCCCTCGGAGGAATGGGGTTGGAGTCTCCCCGATGATGACAATTTAAACGAGA
1 GGGTTGGAGTATCCCCTCAGAGAAATAGGGTTGGAGTCTCCCCGATGATGACAATTTAAACGAGA
32369 ATAAGATTTAAACTTTGATGAGTTTAAAACC-
66 ATAAGATTTAAACTTTGATGAGTTTAAAACCA
* * * * * *
32400 GAGGTTGGAGTATCCCCTTAGAGAAATAGGGTTAGAGTGTCCTCGATGATGTCAATTTAAGCGAG
1 G-GGTTGGAGTATCCCCTCAGAGAAATAGGGTTGGAGTCTCCCCGATGATGACAATTTAAACGAG
*
32465 AATAAGATTTAAACTTTGATGAGTTTAAAAGCA
65 AATAAGATTTAAACTTTGATGAGTTTAAAACCA
* * *
32498 GGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCC
1 GGGTTGGAGTATCCCCTCAGAGAAATAGGGTTGGAGTCTCCC
32540 AAATAAAATT
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
95 1 0.01
96 6 0.05
97 112 0.93
98 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (97 bp):
GGGTTGGAGTATCCCCTCAGAGAAATAGGGTTGGAGTCTCCCCGATGATGACAATTTAAACGAGA
ATAAGATTTAAACTTTGATGAGTTTAAAACCA
Found at i:33561 original size:21 final size:22
Alignment explanation
Indices: 33533--33582 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
33523 AATAAAGATC
33533 ATTTTTTTTTGAAAAATCATAA
1 ATTTTTTTTTGAAAAATCATAA
33555 ATTTTTTTTTGAAAAATCATAA
1 ATTTTTTTTTGAAAAATCATAA
33577 ATTTTT
1 ATTTTT
33583 AACTTTTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (22 bp):
ATTTTTTTTTGAAAAATCATAA
Found at i:35388 original size:28 final size:27
Alignment explanation
Indices: 35349--36159 Score: 778
Period size: 28 Copynumber: 28.4 Consensus size: 27
35339 CATCAACTTG
*
35349 TGTGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAGG-TGCCACTAACT
* *
35377 TGTGGGCTTTGAAAAGATGCCACTTACT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
*
35405 TGTGGGCTTTAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAA-GGTGCCACTAACT
* * * *
35433 TGTGGGCTTTAAAAAGATACCACTCACT
1 TGTGGGCTTT-GAAAGGTGCCACTAACT
* * *
35461 TATGGGCTTTGAAAATGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
* *
35489 TATGGGCTTTGAAAAGGGATGCCACTGACT
1 TGTGGGCTTTG-AAA-GG-TGCCACTAACT
35519 TGTGGGCTTTGAAAAGAGTTGCCACTAACT
1 TGTGGGCTTTG-AAAG-G-TGCCACTAACT
* * * **
35549 TGTGGGTTTTGAAAAGATGTCACTGGCT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
* * *
35577 TATAGGCTTTCAGAAGGTGCCACTAACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
35605 TGTGGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
* *
35633 TGTGGGCTTTGAAAAGGGTTGCCATTGACT
1 TGTGGGCTTTG-AAA-GG-TGCCACTAACT
*
35663 TATGGGCTTTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
* *
35691 TGTAGGCTTTGAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGTGCCACTAACT
*
35718 TGTGGGCTTTAAAAAGGGTTGCCACTAACT
1 TGTGGGCTTT-GAAA-GG-TGCCACTAACT
* * *
35748 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
* * *
35776 TGTGGGCTTTAAGAAGGTGCCGCTGACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
35804 TGTGGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
*
35832 TGTGGGCTTTGAAAAGGGTTGCCACTGACT
1 TGTGGGCTTTG-AAA-GG-TGCCACTAACT
35862 TGTGGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
*
35890 TGTGGGCTTTGAAAAGGGATGCCACTGACT
1 TGTGGGCTTTG-AAA-GG-TGCCACTAACT
*
35920 TGTGGGCTTGGAAAAGGGTTGCCACTAACT
1 TGTGGGCTTTG-AAA-GG-TGCCACTAACT
* *
35950 TGTGGGCTTTAAAAAGGGTTGCCACTGACT
1 TGTGGGCTTT-GAAA-GG-TGCCACTAACT
* * *
35980 TG-GAGGCTTTGAAATGATGCCATTGACT
1 TGTG-GGCTTTGAAA-GGTGCCACTAACT
* *
36008 TATGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGG-TGCCACTAACT
* *
36036 TATGGGCTTTGAGAGGGTGCCACTAACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
* *
36064 TGTGAGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTG-AAAGGTGCCACTAACT
*
36092 TGTGGGCTTTGAGAAGGTGCCACTGACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
*
36120 TGTGGGATTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGA-AAGGTGCCACTAACT
36148 TGTGGGCTTTGA
1 TGTGGGCTTTGA
36160 CTTATGGGCT
Statistics
Matches: 667, Mismatches: 86, Indels: 60
0.82 0.11 0.07
Matches are distributed among these distances:
27 31 0.05
28 409 0.61
29 37 0.06
30 190 0.28
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (27 bp):
TGTGGGCTTTGAAAGGTGCCACTAACT
Found at i:35573 original size:58 final size:56
Alignment explanation
Indices: 35349--36159 Score: 878
Period size: 56 Copynumber: 14.2 Consensus size: 56
35339 CATCAACTTG
* *
35349 TGTGGGCTTTG-AAAGGATGCCACTCACTTGTGGGCTTTGAAAAGATGCCACTTACT
1 TGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
35405 TGTGGGCTTT-AAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGATACCACTCACT
1 TGTGGGCTTTGAAAA-GGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
35461 TATGGGCTTTGAAAATGTGCCACTGACTTATGGGCTTTGAAAAGGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA--GATGCCACTAACT
* * **
35519 TGTGGGCTTTGAAAAGAGTTGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTGGCT
1 TGTGGGCTTTGAAAAG-G-TGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * *
35577 TATAGGCTTTCAGAAGGTGCCACTAACTTGTGGGCTTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
35633 TGTGGGCTTTGAAAAGGGTTGCCATTGACTTATGGGCTTTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAA-GG-TGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
35691 TGTAGGCTTTG-AAAGGTGCCACTGACTTGTGGGCTTTAAAAAGGGTTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA--GATGCCACTAACT
* * * * * *
35748 TATGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTT-AAGAAGGTGCCGCTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAA-AAGATGCCACTAACT
* * *
35804 TGTGGGCTTTGAGAAGGTGCCACTAACTTGTGGGCTTTGAAAAGGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA--GATGCCACTAACT
* *
35862 TGTGGGCTTTGAGAAGGTGCCACTAACTTGTGGGCTTTGAAAAGGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA--GATGCCACTAACT
* * * *
35920 TGTGGGCTTGGAAAAGGGTTGCCACTAACTTGTGGGCTTTAAAAAGGGTTGCCACTGACT
1 TGTGGGCTTTGAAAA-GG-TGCCACTAACTTGTGGGCTTTGAAAA--GATGCCACTAACT
* * * * *
35980 TG-GAGGCTTTGAAATGATGCCATTGACTTATGGGCTTT-AAAAGGATGCCACTAACT
1 TGTG-GGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA-GATGCCACTAACT
* * * *
36036 TATGGGCTTTGAGAGGGTGCCACTAACTTGTGAGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
36092 TGTGGGCTTTGAGAAGGTGCCACTGACTTGTGGGATTTGAGAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
36148 TGTGGGCTTTGA
1 TGTGGGCTTTGA
36160 CTTATGGGCT
Statistics
Matches: 653, Mismatches: 81, Indels: 42
0.84 0.10 0.05
Matches are distributed among these distances:
55 23 0.04
56 287 0.44
57 46 0.07
58 219 0.34
59 5 0.01
60 73 0.11
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (56 bp):
TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACT
Done.