Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold201
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 841227
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.30
Warning! 75646 characters in sequence are not A, C, G, or T
File 5 of 6
Found at i:717587 original size:30 final size:28
Alignment explanation
Indices: 717496--717681 Score: 194
Period size: 30 Copynumber: 6.5 Consensus size: 28
717486 TCACCCTTTA
* * *
717496 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCAAC-CTTCC
717525 AAAGCCCACAAGTCAGTGGCAACCTT-C
1 AAAGCCCACAAGTCAGTGGCAACCTTCC
* * *
717552 AAAGCCCACAAATTAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAACC--TTCC
**
717582 AAAGCCCACAAGTCAGTGGCAACCTTGA
1 AAAGCCCACAAGTCAGTGGCAACCTTCC
* * *
717610 AAAGCCCACAAGTCAATGGCACCCTTTTTC
1 AAAGCCCACAAGTCAGTGGCAACC--TTCC
* * *
717640 ACAGCCCACAAATCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCC
717668 AAAGCCCACAAGTC
1 AAAGCCCACAAGTC
717682 CATGGCATCT
Statistics
Matches: 130, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
27 22 0.17
28 40 0.31
29 24 0.18
30 44 0.34
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.19
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCAACCTTCC
Found at i:717594 original size:86 final size:85
Alignment explanation
Indices: 717490--717696 Score: 249
Period size: 86 Copynumber: 2.4 Consensus size: 85
717480 CATTCCTCAC
* *
717490 CCTTTAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAACC-TTCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAATGGCAACCTTTCAA
* *
717554 AGCCCACAAATTAGTGGCAC
66 AGCCCACAAATCAGTGGCAA
* * * ** *
717574 CCTTTTCCAAAGCCCACAAGTCAGTGGCAAC-CTTGAAAAGCCCACAAGTCAATGGCACCCTTTT
1 CC--TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAATGGCAACC--TT
*
717638 TCACAGCCCACAAATCAGTGGCAA
62 TCAAAGCCCACAAATCAGTGGCAA
717662 CCTTCAAAAGCCCACAAGTCCA-TGGCATCTTTTTC
1 CCTTCAAAAGCCCACAAGT-CAGTGGCATCTTTTTC
717697 CTTTTAAGCC
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
84 2 0.02
85 24 0.24
86 46 0.46
87 4 0.04
88 24 0.24
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (85 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAATGGCAACCTTTCAA
AGCCCACAAATCAGTGGCAA
Found at i:717598 original size:57 final size:57
Alignment explanation
Indices: 717496--717681 Score: 275
Period size: 58 Copynumber: 3.2 Consensus size: 57
717486 TCACCCTTTA
*
717496 AAAGCCCACAAGTCAGTGGCA-TCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTC
* * * *
717552 AAAGCCCACAAATTAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTGA
1 AAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTT-C
* * *
717610 AAAGCCCACAAGTCAATGGCACCCTTTTTCACAGCCCACAAATCAGTGGCAACCTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTC
717667 AAAAGCCCACAAGTC
1 -AAAGCCCACAAGTC
717682 CATGGCATCT
Statistics
Matches: 115, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
56 19 0.17
57 32 0.28
58 64 0.56
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.19
Consensus pattern (57 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTC
Found at i:717734 original size:30 final size:31
Alignment explanation
Indices: 717669--717752 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
717659 CAACCTTCAA
* *
717669 AAGCCCACAAGTCCATGGCATCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA-CTTTTT-CTTTT
717702 AAGCCCACAACTCCGTGGCACTTTTT-TTTT
1 AAGCCCACAACTCCGTGGCACTTTTTCTTTT
*
717732 AAGTCCACAACTCCGTGGCAC
1 AAGCCCACAACTCCGTGGCAC
717753 CTTTAAACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
30 24 0.50
32 6 0.12
33 18 0.38
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.31
Consensus pattern (31 bp):
AAGCCCACAACTCCGTGGCACTTTTTCTTTT
Found at i:717891 original size:43 final size:43
Alignment explanation
Indices: 717843--717980 Score: 186
Period size: 43 Copynumber: 3.1 Consensus size: 43
717833 GGCACTTTGT
717843 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
717886 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAAC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
717929 CTTTATCTTTAGGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTA-----A-GACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
717978 CTT
1 CTT
717981 CATCTTTAAG
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
43 44 0.54
48 1 0.01
49 36 0.44
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (43 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:717958 original size:49 final size:49
Alignment explanation
Indices: 717753--718247 Score: 356
Period size: 49 Copynumber: 10.0 Consensus size: 49
717743 TCCGTGGCAC
* *
717753 CTTTAA-ACCCAATATCACTGGCCTTGAATCAGCATATTGGCA-C-----
1 CTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* *
717796 CTTTAA-ACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTTGT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
717843 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
717886 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTTAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
717935 CTTTAGGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
717984 CTTTAAGTCCAATATCGCTGGCCTTCAATCAGC-CTATTGACATCCTTTTTCTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCAC-ATTGGCA-CC---TT-T-AT
* * * *
718039 CTTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCAT
1 CTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTT-T-AT
* * * * * * *
718092 CTTCAAGGCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CC---TT-T-AT
* * * *
718147 CTTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCAT
1 CTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTT-T-AT
* * * * * *
718200 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGGCATCCTTT
1 CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
718248 TTCTCATCTT
Statistics
Matches: 381, Mismatches: 46, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
42 34 0.09
43 45 0.12
44 1 0.00
47 6 0.02
48 35 0.09
49 78 0.20
50 2 0.01
51 1 0.00
52 67 0.18
53 26 0.07
55 20 0.05
56 65 0.17
57 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (49 bp):
CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
Found at i:717966 original size:92 final size:92
Alignment explanation
Indices: 717753--718078 Score: 399
Period size: 92 Copynumber: 3.4 Consensus size: 92
717743 TCCGTGGCAC
* * * *
717753 CTTTAA-ACCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTAA-ACCAATATCGCTGG
1 CTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGG
* *
717816 CCTTGAATCAGCATATTGGCA-CTTTGT
65 CCTTGAATCAGCATATTGGAACCTTTAT
717843 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
717908 CTTGAATCAGCATATTGGAACCTTTAT
66 CTTGAATCAGCATATTGGAACCTTTAT
*
717935 CTTTAGGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATC
* *
718000 GCTGGCCTTCAATCAGCCTATT-GACATCCTTTTTCTCAT
60 GCTGGCCTTGAATCAGCATATTGGA-A-CC---TT-T-AT
*
718039 CTTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTG
1 CTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCACATTG
718079 ACATTCTTCT
Statistics
Matches: 208, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
90 44 0.21
91 34 0.16
92 46 0.22
96 1 0.00
97 2 0.01
98 37 0.18
99 2 0.01
102 2 0.01
103 1 0.00
104 8 0.04
105 31 0.15
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (92 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
CTTGAATCAGCATATTGGAACCTTTAT
Found at i:718070 original size:56 final size:55
Alignment explanation
Indices: 717894--718385 Score: 411
Period size: 56 Copynumber: 9.3 Consensus size: 55
717884 ACCTTTAAGT
* * **
717894 CCAATATCGCTGGCCTTGAATCAGCATATTGGA-ACC---TT-T-ATCTTTAGGA-
1 CCAATGTCGCTGGCCTTGAATCAGCACATT-GACACCTTTTTCTCATCTTTAAAAC
* **
717943 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC----T-TCATCTTT-AAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAAAC
* *
717992 CCAATATCGCTGGCCTTCAATCAGC-CTATTGACATCCTTTTTCTCATCTTTAAAAC
1 CCAATGTCGCTGGCCTTGAATCAGCAC-ATTGACA-CCTTTTTCTCATCTTTAAAAC
* * **
718048 CCAATGTCGCTGGCCTTGAATCAGCACATTGACA--TTCTTCTCATC-TTCAAGG
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAAAC
* * *
718100 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAAC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAAAC
* * **
718156 CCAATGTCGCTGGCCTTGAATCAGCACATTGACA--TTCTTCTCATC-TTCAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAAAC
* * * *
718208 CTAATGTCGCTGACCGTGAATCAGCACATTGGCATCCTTTTTCTCATCTTTAAAAC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAAAC
* * * * * * **
718264 CTAATGTCGCTGGCTTTGAATTAGCATATTGACA--TTCTTCTCATC-TTCAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAAAC
* ** * *
718316 CTAATGTCATTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAAC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAAAC
* *
718371 CCAATATCGTTGGCC
1 CCAATGTCGCTGGCC
718386 GTGGATCAAT
Statistics
Matches: 356, Mismatches: 63, Indels: 42
0.77 0.14 0.09
Matches are distributed among these distances:
48 4 0.01
49 66 0.19
50 2 0.01
52 100 0.28
53 30 0.08
54 1 0.00
55 51 0.14
56 101 0.28
57 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.34
Consensus pattern (55 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAAAC
Found at i:718120 original size:52 final size:52
Alignment explanation
Indices: 717945--718350 Score: 336
Period size: 52 Copynumber: 7.6 Consensus size: 52
717935 CTTTAGGACC
* * * * *
717945 AATGTCGCTGGCCTTGAATCAGCACATTGGCA--CCT-TCATCTTTAAGTCC-
1 AATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCTCATCTTCAAG-CCT
* * * * * * * *
717994 AATATCGCTGGCCTTCAATCAGC-CTATTGACATCCTTTTTCTCATCTTTAAAACCC
1 AATGTCGCTGACCGTGAATCAGCAC-ATTGACA---TTCTTCTCATC-TTCAAGCCT
* * *
718050 AATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGGCT
1 AATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCTCATCTTCAAGCCT
* * * *
718102 AATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAACCC
1 AATGTCGCTGACCGTGAATCAGCACATTGACA---TTCTTCTCATC-TTCAAGCCT
* * *
718158 AATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCT
1 AATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCTCATCTTCAAGCCT
* * * *
718210 AATGTCGCTGACCGTGAATCAGCACATTGGCATCCTTTTTCTCATCTTTAAAACCT
1 AATGTCGCTGACCGTGAATCAGCACATT-G-A-CATTCTTCTCATC-TTCAAGCCT
* ** * * *
718266 AATGTCGCTGGCTTTGAATTAGCATATTGACATTCTTCTCATCTTCAAGTCT
1 AATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCTCATCTTCAAGCCT
**
718318 AATGTCATTGACCGTGAATCAGCACATTGACAT
1 AATGTCGCTGACCGTGAATCAGCACATTGACAT
718351 CCTTTTTCTC
Statistics
Matches: 287, Mismatches: 52, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
48 1 0.00
49 27 0.09
52 98 0.34
53 32 0.11
54 3 0.01
55 29 0.10
56 96 0.33
57 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.34
Consensus pattern (52 bp):
AATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCTCATCTTCAAGCCT
Found at i:718137 original size:108 final size:108
Alignment explanation
Indices: 717943--718385 Score: 680
Period size: 108 Copynumber: 4.1 Consensus size: 108
717933 ATCTTTAGGA
* * * * * *
717943 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--CCT-TCATCTTTAAGTCCAATATCGCTGG
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCTAATGTCGCTGA
* *
718005 CCTTCAATCAGC-CTATTGACATCCTTTTTCTCATCTTTAAAAC
66 CCGTGAATCAGCAC-ATTGACATCCTTTTTCTCATCTTTAAAAC
*
718048 CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGGCTAATGTCGCTGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCTAATGTCGCTGA
718113 CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAAC
66 CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAAC
718156 CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCTAATGTCGCTGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCTAATGTCGCTGA
*
718221 CCGTGAATCAGCACATTGGCATCCTTTTTCTCATCTTTAAAAC
66 CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAAC
* * * * **
718264 CTAATGTCGCTGGCTTTGAATTAGCATATTGACATTCTTCTCATCTTCAAGTCTAATGTCATTGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCTAATGTCGCTGA
718329 CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAAC
66 CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAAC
* *
718371 CCAATATCGTTGGCC
1 CCAATGTCGCTGGCC
718386 GTGGATCAAT
Statistics
Matches: 312, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
105 33 0.11
107 17 0.05
108 261 0.84
109 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.34
Consensus pattern (108 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGTCTAATGTCGCTGA
CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAAAC
Found at i:718857 original size:19 final size:19
Alignment explanation
Indices: 718833--718883 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
718823 TTTCAACGAT
718833 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
718852 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
718871 TTGTATCGATACA
1 TTGTATCGATACA
718884 ATGTATCGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:718954 original size:13 final size:13
Alignment explanation
Indices: 718936--718960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
718926 ATTACTCAAA
718936 TGTATCGATACAT
1 TGTATCGATACAT
718949 TGTATCGATACA
1 TGTATCGATACA
718961 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:719013 original size:52 final size:52
Alignment explanation
Indices: 718969--719097 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
718959 CACTGATCTT
718969 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
719021 TGTTTCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
719073 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
719098 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:726168 original size:20 final size:21
Alignment explanation
Indices: 726128--726168 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
726118 GATATTTGGA
*
726128 CTAAACTGTATCCATATATAG
1 CTAAACTGTATCCATACATAG
*
726149 CTAAA-TGTATCGATACATAG
1 CTAAACTGTATCCATACATAG
726169 GCCAATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (21 bp):
CTAAACTGTATCCATACATAG
Found at i:726747 original size:19 final size:20
Alignment explanation
Indices: 726709--726748 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
726699 AGATGTATTA
726709 ATACATATTGCTTGGTATCG
1 ATACATATTGCTTGGTATCG
* *
726729 ATACATGTT-CTTTGTATCG
1 ATACATATTGCTTGGTATCG
726748 A
1 A
726749 CACACCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (20 bp):
ATACATATTGCTTGGTATCG
Found at i:727401 original size:35 final size:34
Alignment explanation
Indices: 727351--727416 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
727341 TAAGTGATTG
* *
727351 AGAGGTTTTACCTTAGCCTTTGTAAAAGATAGGGA
1 AGAGGTTCTACCTTAGCCTTCG-AAAAGATAGGGA
*
727386 AGAGGTTCTATCTTAGCCTTCGAAAAGATAG
1 AGAGGTTCTACCTTAGCCTTCGAAAAGATAG
727417 TGTTGTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 9 0.32
35 19 0.68
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (34 bp):
AGAGGTTCTACCTTAGCCTTCGAAAAGATAGGGA
Found at i:728104 original size:16 final size:16
Alignment explanation
Indices: 728083--728133 Score: 50
Period size: 20 Copynumber: 2.9 Consensus size: 16
728073 AAATGACAAT
728083 AATAAAAAAGAAAGCA
1 AATAAAAAAGAAAGCA
728099 AATAAAGAAAGCAGAAAGCA
1 AAT-AA-AAA--AGAAAGCA
728119 AATATAAAAA-AAAGC
1 AATA-AAAAAGAAAGC
728134 CATGTAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
16 8 0.27
17 3 0.10
18 3 0.10
19 4 0.13
20 12 0.40
ACGTcount: A:0.71, C:0.08, G:0.14, T:0.08
Consensus pattern (16 bp):
AATAAAAAAGAAAGCA
Found at i:731920 original size:52 final size:52
Alignment explanation
Indices: 731781--731906 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
731771 AATATGAAAC
* *
731781 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGTAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTAGGCAAA
* * *
731833 TTTGCTTGTATGTATCGATACATTTCATAGTGTATCAATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTAGGCAAA
731885 TTTGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
731907 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTAGGCAAA
Found at i:731968 original size:13 final size:13
Alignment explanation
Indices: 731950--732033 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
731940 AGCTTCGTAG
731950 CGATACATTGTAT
1 CGATACATTGTAT
731963 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
731982 CGATACATTGTAT
1 CGATACATTGTAT
731995 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
732014 CGATACATTGTAT
1 CGATACATTGTAT
732027 CGATACA
1 CGATACA
732034 AATCATTGAA
Statistics
Matches: 59, Mismatches: 0, Indels: 24
0.71 0.00 0.29
Matches are distributed among these distances:
13 26 0.44
14 1 0.02
15 2 0.03
16 8 0.14
17 2 0.03
18 1 0.02
19 19 0.32
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:731982 original size:19 final size:18
Alignment explanation
Indices: 731958--732020 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
731948 AGCGATACAT
731958 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
731977 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
731990 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
732009 TGTATCGATACA
1 TGTATCGATACA
732021 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:731991 original size:32 final size:32
Alignment explanation
Indices: 731950--732035 Score: 163
Period size: 32 Copynumber: 2.7 Consensus size: 32
731940 AGCTTCGTAG
731950 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
731982 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
732014 CGATACATTGTATCGATACAAA
1 CGATACATTGTATCGATACAAA
732036 TCATTGAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:733119 original size:22 final size:22
Alignment explanation
Indices: 733093--733154 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
733083 ATGTCGGTGC
733093 CAATATGCTGATTCAAGGCCAA
1 CAATATGCTGATTCAAGGCCAA
* ***
733115 CAATAT-CGGACTTCAAGG-TGT
1 CAATATGCTGA-TTCAAGGCCAA
733136 CAATATGCTGATTCAAGGC
1 CAATATGCTGATTCAAGGC
733155 TAGCGATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (22 bp):
CAATATGCTGATTCAAGGCCAA
Found at i:733191 original size:93 final size:89
Alignment explanation
Indices: 732907--733214 Score: 325
Period size: 87 Copynumber: 3.4 Consensus size: 89
732897 TGAGAAAAGT
* * * *
732907 GATAAAGATGCTAATATGCTGATTCACGGCCAACGATATTGGACTT-GTGCCGATATGCTGATTC
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAGTGCCGATATGCTGATTC
**
732971 AAGGCCAGCGACATTGAACTTAAA
66 AAGGCCAGCGACATTGGTCTTAAA
* * * * * * * *
732995 GA-CAAGGGGACAATACGCCGATTCAAAGCCAACAATATTGGGCTTA-TGCCGATGTGCTGATTC
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAGTGCCGATATGCTGATTC
*
733058 AAGGCCAGCAACATTGGTCTTAAA
66 AAGGCCAGCGACATTGGTCTTAAA
*** * * *
733082 GATGTCGGTGCCAATATGCTGATTCAAGGCCAACAATATCGGACTTCAAGGTGTCAATATGCTGA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTT--A-GTGCCGATATGCTGA
* * *
733147 TTCAAGGCTAGCGATATTGGGTTTTAAA
63 TTCAAGGCCAGCGACATT-GGTCTTAAA
* *
733175 GATAAAGGTGCCAATATGCTGGTTCAAGGCCAACGATATT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATT
733215 AGATTTTAGA
Statistics
Matches: 175, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
87 71 0.41
88 35 0.20
90 1 0.01
92 26 0.15
93 42 0.24
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (89 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAGTGCCGATATGCTGATTC
AAGGCCAGCGACATTGGTCTTAAA
Found at i:733222 original size:50 final size:51
Alignment explanation
Indices: 733129--733227 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 51
733119 ATCGGACTTC
* * * * *
733129 AAGGTGTCAATATGCTGATTCAAGGCTAGCGATATTGGGTTTTA-AAGATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGATTTTAGAAGATA
*
733179 AAGGTGCCAATATGCTGGTTCAAGGCCAACGATATTAGATTTTAGAAGA
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGATTTTAGAAGA
733228 AGACGCCACC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 38 0.90
51 4 0.10
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (51 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGATTTTAGAAGATA
Found at i:733309 original size:28 final size:29
Alignment explanation
Indices: 733244--733338 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
733234 CACCAACTTG
* *
733244 TGTGGGCTTTTGAAAAGGTTG-CATTAACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTGACT
*
733273 TGTGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* *
733301 TGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTGACT
733330 TGTGGGCTT
1 TGTGGGCTT
733339 AAAAGGGTGC
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
27 11 0.20
28 14 0.25
29 30 0.54
30 1 0.02
ACGTcount: A:0.17, C:0.16, G:0.33, T:0.35
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTGACT
Found at i:733311 original size:27 final size:29
Alignment explanation
Indices: 733244--733361 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 29
733234 CACCAACTTG
* * *
733244 TGTGGGCTTTTGAAAAGGTTG-CATTAACT
1 TGTGGGCTTTTG-AAAGGGTGCCACTGACT
* *
733273 TGTGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGGTGCCACTGACT
*
733301 TGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTGAAA-GGGTGCCACTGACT
* * *
733330 TGTGGGC--TTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTTGAAAGGGTGCCACTGACT
733357 TGTGG
1 TGTGG
733362 ACTTAAAAGG
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
27 28 0.36
28 19 0.25
29 30 0.39
ACGTcount: A:0.19, C:0.15, G:0.34, T:0.31
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGGTGCCACTGACT
Found at i:733332 original size:29 final size:27
Alignment explanation
Indices: 733285--733371 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
733275 TGTGCTTTTG
* *
733285 AAGGTTGCCACTGACTTGTGGGCTTTGAA
1 AAGGGTGCCACAGACTTGTGGGC-TT-AA
* *
733314 AGGGGTGCCACCGACTTGTGGGCTTAA
1 AAGGGTGCCACAGACTTGTGGGCTTAA
* *
733341 AAGGGTGCCACAGAGTTGTGGACTTAA
1 AAGGGTGCCACAGACTTGTGGGCTTAA
733368 AAGG
1 AAGG
733372 AAAAAGAGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 29 0.57
28 2 0.04
29 20 0.39
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (27 bp):
AAGGGTGCCACAGACTTGTGGGCTTAA
Found at i:733377 original size:34 final size:34
Alignment explanation
Indices: 733339--733601 Score: 386
Period size: 34 Copynumber: 7.7 Consensus size: 34
733329 TTGTGGGCTT
* *
733339 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
*
733373 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
*
733407 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
*
733441 AAATGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
* *
733475 AAAAGAGTGCCATAGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGGA
* *
733510 AGAAAG-GTGCCACAGAGTTGTGGACTTAGAAGGA
1 A-AAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
*
733544 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGGA
733579 AAAA-AGGTGCCACAGAGTTGTGG
1 AAAAGA-GTGCCACAGAGTTGTGG
733602 ACTTTTGAAG
Statistics
Matches: 209, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
33 4 0.02
34 147 0.70
35 54 0.26
36 4 0.02
ACGTcount: A:0.37, C:0.11, G:0.33, T:0.19
Consensus pattern (34 bp):
AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
Found at i:733543 original size:69 final size:68
Alignment explanation
Indices: 733339--733605 Score: 385
Period size: 69 Copynumber: 3.9 Consensus size: 68
733329 TTGTGGGCTT
* * * * *
733339 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCACAGAGTTGTGGACTTAAAA
733404 GGA
66 GGA
* * * *
733407 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAATGAGTGCCACAGAGTTGTGGGCTTAAAA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCACAGAGTTGTGGACTTAAAA
733472 GGA
66 GGA
* *
733475 AAAAGAGTGCCATAGAGTTGTGGGCTTTAAAAAGAAGAAAG-GTGCCACAGAGTTGTGGACTTAG
1 AAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAAGAA-AAAGAGTGCCACAGAGTTGTGGACTTAA
733539 AAGGA
64 AAGGA
733544 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAA-AGGTGCCACAGAGTTGTGGACTT
1 AAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAAGAAAAAGA-GTGCCACAGAGTTGTGGACTT
733606 TTGAAGGTTG
Statistics
Matches: 183, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
68 89 0.49
69 91 0.50
70 3 0.02
ACGTcount: A:0.37, C:0.12, G:0.32, T:0.19
Consensus pattern (68 bp):
AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAAGAAAAAGAGTGCCACAGAGTTGTGGACTTAAAA
GGA
Found at i:733648 original size:29 final size:30
Alignment explanation
Indices: 733614--733724 Score: 120
Period size: 30 Copynumber: 3.8 Consensus size: 30
733604 TTTTGAAGGT
*
733614 TGCCACTGGCTTGTGGG-ATTTGAAAAAGA
1 TGCCACTGACTTGTGGGCATTTGAAAAAGA
* * *
733643 TGCCACTGACTTGTGGGCTTTTGAAAAGGG
1 TGCCACTGACTTGTGGGCATTTGAAAAAGA
* * *
733673 TGCCACTGACTTGTGGGC-TTT-TAAAGGT
1 TGCCACTGACTTGTGGGCATTTGAAAAAGA
* *
733701 TGCCACTAACTTGTGGGCTTTTGA
1 TGCCACTGACTTGTGGGCATTTGA
733725 CAGGGTGAGG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
28 22 0.31
29 22 0.31
30 27 0.38
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (30 bp):
TGCCACTGACTTGTGGGCATTTGAAAAAGA
Found at i:733668 original size:30 final size:30
Alignment explanation
Indices: 733579--733724 Score: 158
Period size: 28 Copynumber: 5.0 Consensus size: 30
733569 TTTAAAAAGA
* * * *
733579 AAAAAGGTGCCACAGAGTTGTGGACTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTTG
* * *
733609 --AAGGTTGCCACTGGCTTGTGGG-ATTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTTG
* *
733636 AAAAAGATGCCACTGACTTGTGGGCTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTTG
733666 AAAAGGGTGCCACTGACTTGTGGGCTTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTTG
* *
733695 -AAAGGTTGCCACTAACTTGTGGGCTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTTG
733724 A
1 A
733725 CAGGGTGAGG
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
27 4 0.04
28 42 0.44
29 19 0.20
30 31 0.32
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (30 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTTG
Found at i:737504 original size:20 final size:21
Alignment explanation
Indices: 737479--737575 Score: 89
Period size: 20 Copynumber: 4.8 Consensus size: 21
737469 AAAACCCCTA
737479 AAAGTATCGATACATAATT-C
1 AAAGTATCGATACATAATTGC
*
737499 AAAGTATCGATACAT-GTTGC
1 AAAGTATCGATACATAATTGC
* *
737519 AATGTATCGATACATGAA---A
1 AAAGTATCGATACAT-AATTGC
*
737538 AAATGTATCGATACAT-GTTGC
1 AAA-GTATCGATACATAATTGC
*
737559 AATGTATCGATACATAA
1 AAAGTATCGATACATAA
737576 AAAAGATGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
19 4 0.07
20 54 0.90
21 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (21 bp):
AAAGTATCGATACATAATTGC
Found at i:737546 original size:40 final size:41
Alignment explanation
Indices: 737502--737594 Score: 170
Period size: 40 Copynumber: 2.3 Consensus size: 41
737492 ATAATTCAAA
*
737502 GTATCGATACATGTTGCAATGTATCGATACATGAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
737542 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
737583 GTATCGATACAT
1 GTATCGATACAT
737595 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 37 0.73
41 14 0.27
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:737651 original size:13 final size:13
Alignment explanation
Indices: 737633--737658 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
737623 TACAGCAAGT
737633 ATGTATCGATACA
1 ATGTATCGATACA
737646 ATGTATCGATACA
1 ATGTATCGATACA
737659 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:741740 original size:15 final size:15
Alignment explanation
Indices: 741720--741750 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
741710 TAAAAATGTC
*
741720 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
741735 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
741750 C
1 C
741751 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:743617 original size:8 final size:8
Alignment explanation
Indices: 743604--743635 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
743594 ATTTGATTAA
743604 ATTTTGTG
1 ATTTTGTG
743612 ATTTTGTG
1 ATTTTGTG
743620 ATTTTGTG
1 ATTTTGTG
743628 ATTTTGTG
1 ATTTTGTG
743636 TTGAATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:743851 original size:20 final size:20
Alignment explanation
Indices: 743772--743851 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
743762 AATGTCCAAA
*
743772 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
743792 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
743817 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
743837 TTGTATCGATACATT
1 ATGTATCGATACATT
743852 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:743855 original size:13 final size:13
Alignment explanation
Indices: 743837--743875 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
743827 ACATTTTTCT
743837 TTGTATCGATACA
1 TTGTATCGATACA
743850 TTGTATCGATACA
1 TTGTATCGATACA
*
743863 CTGTATCGATACA
1 TTGTATCGATACA
743876 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:745773 original size:48 final size:48
Alignment explanation
Indices: 745719--745811 Score: 186
Period size: 48 Copynumber: 1.9 Consensus size: 48
745709 GAGATAAAGA
745719 AGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATTAGG
1 AGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATTAGG
745767 AGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
745812 CGTAAAATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.26
Consensus pattern (48 bp):
AGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATTAGG
Found at i:746367 original size:20 final size:21
Alignment explanation
Indices: 746342--746438 Score: 89
Period size: 20 Copynumber: 4.8 Consensus size: 21
746332 AAAACCCCTA
746342 AAAGTATCGATACATAATT-C
1 AAAGTATCGATACATAATTGC
*
746362 AAAGTATCGATACAT-GTTGC
1 AAAGTATCGATACATAATTGC
* *
746382 AATGTATCGATACATGAA---A
1 AAAGTATCGATACAT-AATTGC
*
746401 AAATGTATCGATACAT-GTTGC
1 AAA-GTATCGATACATAATTGC
*
746422 AATGTATCGATACATAA
1 AAAGTATCGATACATAA
746439 AAAAGATGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
19 4 0.07
20 54 0.90
21 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (21 bp):
AAAGTATCGATACATAATTGC
Found at i:746409 original size:40 final size:41
Alignment explanation
Indices: 746365--746457 Score: 170
Period size: 40 Copynumber: 2.3 Consensus size: 41
746355 ATAATTCAAA
*
746365 GTATCGATACATGTTGCAATGTATCGATACATGAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
746405 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
746446 GTATCGATACAT
1 GTATCGATACAT
746458 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 37 0.73
41 14 0.27
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:746514 original size:13 final size:13
Alignment explanation
Indices: 746496--746521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
746486 TACAGCAAGT
746496 ATGTATCGATACA
1 ATGTATCGATACA
746509 ATGTATCGATACA
1 ATGTATCGATACA
746522 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:751752 original size:52 final size:52
Alignment explanation
Indices: 751608--751732 Score: 234
Period size: 52 Copynumber: 2.4 Consensus size: 52
751598 AATATGAAAC
751608 TTTGCCTGCATGTATCGATA-ATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
751659 TTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
751711 TTTGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
751733 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 19 0.27
52 52 0.73
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:751759 original size:13 final size:13
Alignment explanation
Indices: 751741--751765 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
751731 CAAAGATCAG
751741 TGTATCGATACAA
1 TGTATCGATACAA
751754 TGTATCGATACA
1 TGTATCGATACA
751766 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:751842 original size:19 final size:18
Alignment explanation
Indices: 751818--751880 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
751808 AGCGATACAT
751818 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
751837 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
751850 TGTATCCATACAACACTTA
1 TGTATCGATACAA-ACTTA
751869 TGTATCGATACA
1 TGTATCGATACA
751881 TTGTATCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
14 1 0.03
16 2 0.06
18 1 0.03
19 22 0.61
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:751851 original size:32 final size:32
Alignment explanation
Indices: 751810--751895 Score: 145
Period size: 32 Copynumber: 2.7 Consensus size: 32
751800 AGCTTCGTAG
*
751810 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCAATACAAAACTTATGTAT
* *
751842 CGATACATTGTATCCATACAACACTTATGTAT
1 CGATACATTGTATCAATACAAAACTTATGTAT
751874 CGATACATTGTATCAATACAAA
1 CGATACATTGTATCAATACAAA
751896 TCATTGAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCAATACAAAACTTATGTAT
Found at i:754838 original size:21 final size:22
Alignment explanation
Indices: 754804--754858 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
754794 TACAGTTATT
754804 TAATATAGTATAATTATTA-TAAA
1 TAATATA-T-TAATTATTATTAAA
754827 TAATATATTAATTATTATTAAA
1 TAATATATTAATTATTATTAAA
*
754849 -AATATTTTAA
1 TAATATATTAA
754859 GAGCAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 18 0.60
22 5 0.17
23 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TAATATATTAATTATTATTAAA
Found at i:754950 original size:18 final size:18
Alignment explanation
Indices: 754929--754965 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
754919 AAACCAGGCT
754929 AATTATAAAAAATTTTAA
1 AATTATAAAAAATTTTAA
*
754947 AATTATATAAAATTTTAA
1 AATTATAAAAAATTTTAA
754965 A
1 A
754966 TTCAATTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTATAAAAAATTTTAA
Found at i:756171 original size:10 final size:10
Alignment explanation
Indices: 756144--756186 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
756134 CTACACAATT
756144 TATAAATATTA
1 TATAAAT-TTA
*
756155 CATAAATTTA
1 TATAAATTTA
*
756165 TATAAATGTA
1 TATAAATTTA
*
756175 TTTAAATTTA
1 TATAAATTTA
756185 TA
1 TA
756187 AATATTACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
10 20 0.77
11 6 0.23
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (10 bp):
TATAAATTTA
Found at i:756201 original size:20 final size:19
Alignment explanation
Indices: 756140--756204 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 19
756130 AATTCTACAC
756140 AATTTATAAATATTACATA
1 AATTTATAAATATTACATA
**
756159 AATTTATATAA-ATGTATTTA
1 AATTTATA-AATAT-TACATA
756179 AATTTATAAATATTACATAA
1 AATTTATAAATATTACAT-A
756199 AATTTA
1 AATTTA
756205 AACTAAATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 15 0.39
20 23 0.61
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (19 bp):
AATTTATAAATATTACATA
Found at i:759626 original size:10 final size:9
Alignment explanation
Indices: 759588--759627 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
759578 TAATCTAATA
759588 CATATATA-
1 CATATATAT
759596 CATATATA-
1 CATATATAT
759604 CATATATAT
1 CATATATAT
759613 -ATATATAT
1 CATATATAT
759621 GCATATA
1 -CATATA
759628 ATATTGAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 24 0.83
10 5 0.17
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (9 bp):
CATATATAT
Found at i:759627 original size:8 final size:8
Alignment explanation
Indices: 759585--759619 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
759575 TTATAATCTA
759585 ATACATAT
1 ATACATAT
759593 ATACATAT
1 ATACATAT
759601 ATACATAT
1 ATACATAT
*
759609 ATATATAT
1 ATACATAT
759617 ATA
1 ATA
759620 TGCATATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (8 bp):
ATACATAT
Found at i:760463 original size:15 final size:14
Alignment explanation
Indices: 760420--760467 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
760410 TTACTTTTTC
* *
760420 TTTTAATATTTCTTC
1 TTTTAAT-TTTATTT
760435 TTTT-ATTTTATTT
1 TTTTAATTTTATTT
760448 TTTTAATTTGTATTT
1 TTTTAATTT-TATTT
760463 TTTTA
1 TTTTA
760468 TACTTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 9 0.31
14 6 0.21
15 14 0.48
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (14 bp):
TTTTAATTTTATTT
Found at i:764663 original size:20 final size:20
Alignment explanation
Indices: 764638--764691 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
764628 GTTAGAAGCA
* *
764638 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATATACC
*
764658 ATGTATCGATATAATATACC
1 ATGTATCGATACAATATACC
764678 ATGTATCGATACAA
1 ATGTATCGATACAA
764692 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATATACC
Found at i:764764 original size:19 final size:19
Alignment explanation
Indices: 764720--764775 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
764710 CTGCCAGTTT
**
764720 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
764740 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
764759 CATGTATCGATATAATG
1 CATGTATCGATACAATG
764776 TATCAATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:764785 original size:32 final size:33
Alignment explanation
Indices: 764741--764803 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
764731 ACAATTGTCC
* * *
764741 ATGTATCGATACAATGAA-CATGTATCGATATA
1 ATGTATCAATACAAAGAAGAATGTATCGATATA
764773 ATGTATCAATACAAAGAAGAATGTATCGATA
1 ATGTATCAATACAAAGAAGAATGTATCGATA
764804 CATCTGGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (33 bp):
ATGTATCAATACAAAGAAGAATGTATCGATATA
Found at i:772718 original size:13 final size:13
Alignment explanation
Indices: 772677--772726 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
772667 GCCGTTAGAA
772677 ACAATGTATCGAT
1 ACAATGTATCGAT
772690 ACAA--T-TC-AT
1 ACAATGTATCGAT
772699 -C-ATGTATCGAT
1 ACAATGTATCGAT
772710 ACAATGTATCGAT
1 ACAATGTATCGAT
772723 ACAA
1 ACAA
772727 ACAGTGGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.10
10 4 0.13
11 3 0.10
12 1 0.03
13 18 0.58
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (13 bp):
ACAATGTATCGAT
Found at i:774482 original size:34 final size:34
Alignment explanation
Indices: 774383--774482 Score: 182
Period size: 34 Copynumber: 2.9 Consensus size: 34
774373 ACAGATATAA
*
774383 AATATTAACTTCTTAGCTAGAGTCAAAAATAAAG
1 AATATTAACTTCTTAGCTAGAGTCAAAAATAGAG
774417 AATATTAACTTCTTAGCTAGAGTCAAAAATAGAG
1 AATATTAACTTCTTAGCTAGAGTCAAAAATAGAG
*
774451 AATATTAACTTCTTAGCTAGAGTAAAAAATAG
1 AATATTAACTTCTTAGCTAGAGTCAAAAATAG
774483 GACTAAAAAC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (34 bp):
AATATTAACTTCTTAGCTAGAGTCAAAAATAGAG
Found at i:780639 original size:16 final size:16
Alignment explanation
Indices: 780618--780651 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
780608 GTGCTTTAAT
*
780618 TTTAATTAAGAGGATC
1 TTTAATCAAGAGGATC
780634 TTTAATCAAGAGGATC
1 TTTAATCAAGAGGATC
780650 TT
1 TT
780652 GTCCTTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (16 bp):
TTTAATCAAGAGGATC
Found at i:781913 original size:29 final size:28
Alignment explanation
Indices: 781849--781928 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 28
781839 CATTCTCATA
781849 ATGTTTTAGTTGACTTTTAA-TTTTTTT
1 ATGTTTTAGTTGACTTTTAATTTTTTTT
* *
781876 AGTGTTTTAGTTCATTTTTAATTCTTTTTT
1 A-TGTTTTAGTTGACTTTTAATT-TTTTTT
781906 ATGTTTTAGTTGACTTTTAATTT
1 ATGTTTTAGTTGACTTTTAATTT
781929 CTTAGCTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 18 0.39
29 20 0.43
30 7 0.15
ACGTcount: A:0.19, C:0.05, G:0.11, T:0.65
Consensus pattern (28 bp):
ATGTTTTAGTTGACTTTTAATTTTTTTT
Found at i:784004 original size:166 final size:168
Alignment explanation
Indices: 783650--784021 Score: 443
Period size: 166 Copynumber: 2.2 Consensus size: 168
783640 TTCGAGAGGG
* * *
783650 TTTTCATGGGTTTAAAATTTTTAAAATTCATCAAATATTATTATTTAATTACTATTAAATCAGTT
1 TTTTCTTGGGTTTAAAATTTTTAAAATTCATCAAATATTATCATCTAATTACTATTAAATCAGTT
* * * *
783715 TTCAAAAATTTGATTCATGTTCATGAGTTTGTCATTTTTTTCCTTGAAATTCTTCTGTTTTTGAA
66 TTCAAAAATTCGATTAATGTTCATGAGTTTGTCAATTTTTTCCTTGAAATTCTTCTATTTTTGAA
* * * *
783780 ATACGGAGTTTTCTACTCCGTAAATGTTTTCAGGGAGA
131 AAACGGAGTTTTCTACTCCATAAATATTTGCAGGGAGA
* * *
783818 TTCTTCTT-AGTTTTAAATTTTTAAAATTCATCAAATATTATCA-CTAGATTCAC-ATTAAATGA
1 TT-TTCTTGGGTTTAAAATTTTTAAAATTCATCAAATATTATCATCTA-ATT-ACTATTAAATCA
* * * * *
783880 GTTTTGAAAAATTCG-TTAATTTTTATGAGTTT-TGAATTTTTTCTTTGAAATTCTTCTATTTTT
63 GTTTTCAAAAATTCGATTAATGTTCATGAGTTTGTCAATTTTTTCCTTGAAATTCTTCTATTTTT
* * * *
783943 GAAAAACTGAGTTTTCTATTCTATAAATATTTGCAGGGGGA
128 GAAAAACGGAGTTTTCTACTCCATAAATATTTGCAGGGAGA
*
783984 TTTTCTTGGGATTAAAATTTTT-AAATTCAT-ATAATATT
1 TTTTCTTGGGTTTAAAATTTTTAAAATTCATCA-AATATT
784022 GTTATTAAAC
Statistics
Matches: 173, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
164 1 0.01
165 19 0.11
166 73 0.42
167 16 0.09
168 58 0.34
169 6 0.03
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.48
Consensus pattern (168 bp):
TTTTCTTGGGTTTAAAATTTTTAAAATTCATCAAATATTATCATCTAATTACTATTAAATCAGTT
TTCAAAAATTCGATTAATGTTCATGAGTTTGTCAATTTTTTCCTTGAAATTCTTCTATTTTTGAA
AAACGGAGTTTTCTACTCCATAAATATTTGCAGGGAGA
Found at i:784574 original size:12 final size:12
Alignment explanation
Indices: 784555--784583 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
784545 AACAAGAGAG
784555 AAAA-AAAAGAA
1 AAAAGAAAAGAA
784566 AAAAGAAAAGAA
1 AAAAGAAAAGAA
784578 AAAAGA
1 AAAAGA
784584 TAAAATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:786467 original size:143 final size:143
Alignment explanation
Indices: 786209--786467 Score: 322
Period size: 143 Copynumber: 1.8 Consensus size: 143
786199 CGGTATCAGG
*
786209 TACTTTTACATCAAAGGTATCCCCTAGGGATATTTTCATAATTTTCTAGAACCAATTCCTAGGTC
1 TACTTTCACATCAAAGGTATCCCCTAGGGATATTTTCATAATTTTCTAGAACCAATTCCTAGGTC
* * * *
786274 GTCACCGTGTCCACTTCCACGCCGAAGGTGTGCATTTAGGATAGGTTCATCTTTTTAAGTCCTTT
66 GTCACCGGGTCCACTTCAACGCCAAAGGTGGGCATTTAGGATAGGTTCATCTTTTTAAGTCCTTT
786339 AAGGGTACTGGGA
131 AAGGGTACTGGGA
* * * * * *
786352 TACTTTCACATCGAAGGTGTCTCCTAAGGG-TATTTTCATATTTTTTTAGAACCAATTCCTAGTT
1 TACTTTCACATCAAAGGTATCCCCT-AGGGATATTTTCATAATTTTCTAGAACCAATTCCTAGGT
* ** *** * * *
786416 TGTCATTGGGTCTGGTTTAATGCCAAAGGTGGGTATTTAGGATAGGTTCATC
65 CGTCACCGGGTCCACTTCAACGCCAAAGGTGGGCATTTAGGATAGGTTCATC
786468 CCCTTTTTAG
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
143 91 0.96
144 4 0.04
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (143 bp):
TACTTTCACATCAAAGGTATCCCCTAGGGATATTTTCATAATTTTCTAGAACCAATTCCTAGGTC
GTCACCGGGTCCACTTCAACGCCAAAGGTGGGCATTTAGGATAGGTTCATCTTTTTAAGTCCTTT
AAGGGTACTGGGA
Found at i:786600 original size:155 final size:155
Alignment explanation
Indices: 786408--787086 Score: 559
Period size: 155 Copynumber: 4.4 Consensus size: 155
786398 TAGAACCAAT
* ** * * * * *
786408 TCCTAGTTTGTCATTGGGTCTGGTTTAATGCCAAAGGTGGGTATTTAGGATAGGTTCATCCCCTT
1 TCCTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATC
* * *
786473 TTTAGTCTTTTTAAGTCCTTTAGGGGTATCGA-GCACTTCTACGTCAAAGATATCTTTTAGGGGT
66 TATAATCTTTTTAAGTCCTTTAGGGGTATCGAGGCACTTCTACGTCAAAGATATCTTTTAGGGGC
**
786537 ATTTTGGTAATTTTATTAAAATTGAG
131 ATTTTAATAATTTT-TTAAAATTGAG
* *
786563 TCCTAGGTTGTCATCGGGTCTTCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATC
1 TCCTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATC
* * * * * ** * *** *
786628 TACAATTTTTTTTAGTCCTTTAAGGGTATC-AGGTACTTTCATA--TTGAAGGTATCCCCTAAGG
66 TATAATCTTTTTAAGTCCTTTAGGGGTATCGAGGCAC-TTC-TACGTCAAAGATATCTTTTAGGG
* * * *
786690 GTATTTTTATAATTTTTAAAAATCGAG
129 GCATTTTAATAATTTTTTAAAATTGAG
* * * * * *
786717 TCCTAGGTTGTCACCGAGTCTGTTTTTATACCAAAGGTGAGTATTTAGGATAGGTTCATCCCATT
1 TCCTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATC
* * *
786782 TATAATCTTTTTAAAGTCTTTTAGGGGTAT-TAGGCACTTCTACGT-AGAAAATATCTTTTAGGG
66 TATAATCTTTTT-AAGTCCTTTAGGGGTATCGAGGCACTTCTACGTCA-AAGATATCTTTTAGGG
* * *
786845 GCATTTTCATAATTTTTTAGAACTGAG
129 GCATTTTAATAATTTTTTAAAATTGAG
* *** * * * * * * *
786872 TCTTAACCTATCACTGGGTCTGCTTATGTGCCGAAGGTGGGCACTTAGGATAAGTTCATCCCATC
1 TCCTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATC
* * * ** *
786937 TATAATC-TTTT-AGTGTCTATTAGGGTTACCGAGATACTT-TCACGTCGAAAG-TATACTTATA
66 TATAATCTTTTTAAGT-CCT-TTAGGGGTATCGAGGCACTTCT-ACGTC-AAAGATAT-CTTTTA
* * * * *
786998 GGGACATTTTAGTAATTTTTTTAGAATTAAC
126 GGGGCATTTTAATAA-TTTTTTAAAATTGAG
* ** * *
787029 TCTTAGGTTGTCACCGGGTCCACTTTTATGCCGAAAGTGGGCATTTAGGATAGGTTCA
1 TCCTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCA
787087 CCGGGTCCGA
Statistics
Matches: 411, Mismatches: 97, Indels: 30
0.76 0.18 0.06
Matches are distributed among these distances:
152 3 0.01
153 3 0.01
154 93 0.23
155 229 0.56
156 22 0.05
157 61 0.15
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (155 bp):
TCCTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATC
TATAATCTTTTTAAGTCCTTTAGGGGTATCGAGGCACTTCTACGTCAAAGATATCTTTTAGGGGC
ATTTTAATAATTTTTTAAAATTGAG
Found at i:786779 original size:154 final size:153
Alignment explanation
Indices: 786322--786811 Score: 500
Period size: 155 Copynumber: 3.2 Consensus size: 153
786312 GGATAGGTTC
* * *
786322 ATCTTTTTAAGTCCTTTAAGGGTACTGGGATACTTTCACATCGAAGGTGTCTCCTAAGGGTATTT
1 ATCTTTTTAAGTCCTTTAAGGGTA-TCGG-TACTTTCATATCGAAGGTATCTCCTAAGGGTATTT
* * * * * * * * *
786387 TCATATTTTTTTAGAACCAATTCCTAGTTTGTCATTGGGTCTGGTTTAATGCCAAAGGTGGGTAT
64 TCATAATTTTTTAAAATCGAGTCCTAGGTTGTCATCGGGTCTGTTTTTATGCCAAAGGTGGGTAT
* * **
786452 TTAGGATAGGTTCATCCCCTTTTTA
129 TTAGGATAGGTTCATCCCATCTACA
* * * * * ** *
786477 GTCTTTTTAAGTCCTTTAGGGGTATCGAGCAC-TTC-TACGTCAAAGATATCTTTTAGGGGTATT
1 ATCTTTTTAAGTCCTTTAAGGGTATCG-GTACTTTCATA--TCGAAGGTATCTCCTAAGGGTATT
** * *
786540 TTGGTAATTTTATTAAAATTGAGTCCTAGGTTGTCATCGGGTCT-TCTTTTATGCCGAAGGTGGG
63 TTCATAATTTT-TTAAAATCGAGTCCTAGGTTGTCATCGGGTCTGT-TTTTATGCCAAAGGTGGG
786604 TATTTAGGATAGGTTCATCCCATCTACA
126 TATTTAGGATAGGTTCATCCCATCTACA
* * * *
786632 ATTTTTTTTAGTCCTTTAAGGGTATCAGGTACTTTCATATTGAAGGTATCCCCTAAGGGTATTTT
1 ATCTTTTTAAGTCCTTTAAGGGTATC-GGTACTTTCATATCGAAGGTATCTCCTAAGGGTATTTT
* * * * * *
786697 TATAATTTTTAAAAATCGAGTCCTAGGTTGTCACCGAGTCTGTTTTTATACCAAAGGTGAGTATT
65 CATAATTTTTTAAAATCGAGTCCTAGGTTGTCATCGGGTCTGTTTTTATGCCAAAGGTGGGTATT
* *
786762 TAGGATAGGTTCATCCCATTTATA
130 TAGGATAGGTTCATCCCATCTACA
* *
786786 ATCTTTTTAAAGTCTTTTAGGGGTAT
1 ATCTTTTT-AAGTCCTTTAAGGGTAT
786812 TAGGCACTTC
Statistics
Matches: 270, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
152 1 0.00
153 3 0.01
154 106 0.39
155 154 0.57
156 4 0.01
157 2 0.01
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (153 bp):
ATCTTTTTAAGTCCTTTAAGGGTATCGGTACTTTCATATCGAAGGTATCTCCTAAGGGTATTTTC
ATAATTTTTTAAAATCGAGTCCTAGGTTGTCATCGGGTCTGTTTTTATGCCAAAGGTGGGTATTT
AGGATAGGTTCATCCCATCTACA
Found at i:786906 original size:309 final size:310
Alignment explanation
Indices: 786322--786947 Score: 760
Period size: 309 Copynumber: 2.0 Consensus size: 310
786312 GGATAGGTTC
* * *
786322 ATCTTTTTAAGTCCTTTAAGGGTACTGGGATACTTTCACATCGAAGGTGTCTCCTAAGGGTATTT
1 ATCTTTTTAAGTCCTTTAAGGGTACTAGGATACTTTCACATCGAAGGTATCCCCTAAGGGTATTT
* * * * * ** * * *
786387 TCATATTTTTTTAGAACCAATTCCTAGTTTGTCATTGGGTCTGGTTTAATGCCAAAGGTGGGTAT
66 TCATAATTTTTAAAAACCAAGTCCTAGGTTGTCACCGAGTCTGGTTTAATACCAAAGGTGAGTAT
* * * *
786452 TTAGGATAGGTTCATCCCCTTTTTAGTCTTTTTAAGTCCTTTAGGGGTATCGAGCACTTCTACGT
131 TTAGGATAGGTTCATCCCATTTATAATCTTTTTAAGTCCTTTAGGGGTATAGAGCACTTCTACGT
* * ** * *** *
786517 CAAAGATATCTTTTAGGGGTATTTTGGTAATTTTATTAAAATTGAGTCCTAGGTTGTCATCGGGT
196 CAAAAATATCTTTTAGGGGCATTTTCATAATTTTATTAAAACTGAGTCCTAACCTATCATCGGGT
* * * * *
786582 CTTCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTACA
261 CTGCTTATATGCCGAAGGTGGGCACTTAGGATAAGTTCATCCCATCTACA
* * * *
786632 ATTTTTTTTAGTCCTTTAAGGGTA-TCAGG-TACTTTCATATTGAAGGTATCCCCTAAGGGTATT
1 ATCTTTTTAAGTCCTTTAAGGGTACT-AGGATACTTTCACATCGAAGGTATCCCCTAAGGGTATT
* * * * *
786695 TTTATAATTTTTAAAAATCGAGTCCTAGGTTGTCACCGAGTCTGTTTTTATACCAAAGGTGAGTA
65 TTCATAATTTTTAAAAACCAAGTCCTAGGTTGTCACCGAGTCTGGTTTAATACCAAAGGTGAGTA
*
786760 TTTAGGATAGGTTCATCCCATTTATAATCTTTTTAAAGTCTTTTAGGGGTATTAG-GCACTTCTA
130 TTTAGGATAGGTTCATCCCATTTATAATCTTTTT-AAGTCCTTTAGGGGTA-TAGAGCACTTCTA
* *
786824 CGT-AGAAAATATCTTTTAGGGGCATTTTCATAATTTT-TTAGAACTGAGTCTTAACCTATCA-C
193 CGTCA-AAAATATCTTTTAGGGGCATTTTCATAATTTTATTAAAACTGAGTCCTAACCTATCATC
* *
786886 TGGGTCTGCTTATGTGCCGAAGGTGGGCACTTAGGATAAGTTCATCCCATCTATA
257 -GGGTCTGCTTATATGCCGAAGGTGGGCACTTAGGATAAGTTCATCCCATCTACA
786941 ATCTTTT
1 ATCTTTT
786948 AGTGTCTATT
Statistics
Matches: 265, Mismatches: 46, Indels: 11
0.82 0.14 0.03
Matches are distributed among these distances:
308 1 0.00
309 183 0.69
310 79 0.30
311 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (310 bp):
ATCTTTTTAAGTCCTTTAAGGGTACTAGGATACTTTCACATCGAAGGTATCCCCTAAGGGTATTT
TCATAATTTTTAAAAACCAAGTCCTAGGTTGTCACCGAGTCTGGTTTAATACCAAAGGTGAGTAT
TTAGGATAGGTTCATCCCATTTATAATCTTTTTAAGTCCTTTAGGGGTATAGAGCACTTCTACGT
CAAAAATATCTTTTAGGGGCATTTTCATAATTTTATTAAAACTGAGTCCTAACCTATCATCGGGT
CTGCTTATATGCCGAAGGTGGGCACTTAGGATAAGTTCATCCCATCTACA
Found at i:790619 original size:13 final size:13
Alignment explanation
Indices: 790601--790654 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 13
790591 GAAAAGAAAG
790601 AAAAGAAAAATGA
1 AAAAGAAAAATGA
790614 AAAAGAAATAAATGA
1 AAAAG-AA-AAATGA
*
790629 AAGAAAATTAAAATGA
1 AA-AAGA--AAAATGA
790645 AAAAGAAAAA
1 AAAAGAAAAA
790655 AACCATGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
13 9 0.26
14 2 0.06
15 12 0.35
16 10 0.29
17 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (13 bp):
AAAAGAAAAATGA
Found at i:790626 original size:15 final size:16
Alignment explanation
Indices: 790607--790656 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
790597 AAAGAAAAGA
790607 AAAATGAAAAAGAAAT
1 AAAATGAAAAAGAAAT
*
790623 -AAATGAAAGAA-AATT
1 AAAATGAAA-AAGAAAT
790638 AAAATGAAAAAGAAA-
1 AAAATGAAAAAGAAAT
790653 AAAA
1 AAAA
790657 CCATGAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 17 0.59
16 12 0.41
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAATGAAAAAGAAAT
Found at i:790634 original size:31 final size:31
Alignment explanation
Indices: 790579--790656 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
790569 AATTTCCTCT
790579 AAAT-AAAAA-AAAGAAAAGAAAGAAAAGAA
1 AAATGAAAAAGAAAGAAAAGAAAGAAAAGAA
* * **
790608 AAATGAAAAAGAAATAAATGAAAGAAAATTA
1 AAATGAAAAAGAAAGAAAAGAAAGAAAAGAA
790639 AAATGAAAAAGAAA-AAAA
1 AAATGAAAAAGAAAGAAAA
790657 CCATGAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 4 0.10
30 8 0.19
31 30 0.71
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (31 bp):
AAATGAAAAAGAAAGAAAAGAAAGAAAAGAA
Found at i:797066 original size:19 final size:19
Alignment explanation
Indices: 797042--797107 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 19
797032 AGTAGCTTCA
797042 TATGTATCGATACAACACT
1 TATGTATCGATACAACACT
*
797061 TATGTATC-A-A-TACA--
1 TATGTATCGATACAACACT
*
797075 T-TGCATCGATACAACACT
1 TATGTATCGATACAACACT
797093 TATGTATCGATACAA
1 TATGTATCGATACAA
797108 ATCGTTGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
13 5 0.14
14 2 0.05
15 1 0.03
16 6 0.16
17 1 0.03
18 2 0.05
19 20 0.54
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:797322 original size:13 final size:13
Alignment explanation
Indices: 797304--797328 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
797294 TCACTATTCA
797304 TGTATCGATACAG
1 TGTATCGATACAG
797317 TGTATCGATACA
1 TGTATCGATACA
797329 TCATAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:797862 original size:34 final size:35
Alignment explanation
Indices: 797799--797865 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
797789 CTAAGTGATT
797799 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
797835 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
797866 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:798277 original size:49 final size:49
Alignment explanation
Indices: 798115--798627 Score: 587
Period size: 49 Copynumber: 10.9 Consensus size: 49
798105 TTGAGCTCAC
* *
798115 AGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTT----A--A
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
** * * * *
798158 AGGTGCCAAGGTGCTGATTCAAGGCCAGCGAAATTGGTCTTAAAGA-CA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * *
798206 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
*
798255 AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT----A--A
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * * *
798298 AGGTGCCAATGTGCTGACTCAAGGCCAGCTACATTAGACTTAAAGATAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
798347 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
*
798396 AGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGACTT----A--A
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * *
798439 AGGTGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* *
798488 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGATGA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * * * *
798537 AGATGCCAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGACGA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * *
798586 AGGTGCCAATATGTTGATTCAAGGCCAACGATATTGGGCTTA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
798628 GAAGGGTTGC
Statistics
Matches: 401, Mismatches: 51, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
43 111 0.28
45 1 0.00
47 3 0.01
48 42 0.10
49 244 0.61
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
Found at i:798350 original size:92 final size:92
Alignment explanation
Indices: 798115--798627 Score: 474
Period size: 92 Copynumber: 5.5 Consensus size: 92
798105 TTGAGCTCAC
* *
798115 AGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAAGGTGCTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTG
* * *
798174 ATTCAAGGCCAGCGAAATTGGTCTTAAAGACA
66 ATTCAAGGCCAGCTACATTGGACTT----A-A
* * * *
798206 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAAGGTGCCAATATGCTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTG
* *
798271 ATTCAAGGCCAACTATATTGGACTTAA
66 ATTCAAGGCCAGCTACATTGGACTTAA
* * * * * *
798298 AGGTGCCAATGTGCTGACTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTG
*
798363 ATTCAAGGCCAGCTATATTGGACTTAAAGATGA
66 ATTCAAGGCCAGCTACATTGGACTT----A--A
* * *
798396 AGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGAC-T-----TAAAGGTGCTAATGTGCTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTG
798455 ATTCAAGGCCAGCTACATTGGACTTAAAGATAA
66 ATTCAAGGCCAGCTACATTGGAC-T-----TAA
* * * *
798488 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGATGAAGATGCCAATGTGTTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTG
*
798553 AGTCAAGGCCAGCTACATTGGACTTAAAGACGA
66 ATTCAAGGCCAGCTACATTGGACTT----A--A
* * *
798586 AGGTGCCAATATGTTGATTCAAGGCCAACGATATTGGGCTTA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
798628 GAAGGGTTGC
Statistics
Matches: 356, Mismatches: 36, Indels: 53
0.80 0.08 0.12
Matches are distributed among these distances:
91 37 0.10
92 160 0.45
93 3 0.01
94 1 0.00
96 2 0.01
97 39 0.11
98 114 0.32
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (92 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTG
ATTCAAGGCCAGCTACATTGGACTTAA
Found at i:798409 original size:141 final size:141
Alignment explanation
Indices: 798115--798581 Score: 747
Period size: 141 Copynumber: 3.3 Consensus size: 141
798105 TTGAGCTCAC
* * *
798115 AGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAAGGTGCTGATTCAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
* * * *
798180 GGCCAGCGAAATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
66 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
*
798244 CTTAAAGGTGA
131 CTTAAAGATGA
* *
798255 AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGCCAATGTGCTGACTCAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
* * *
798320 GGCCAGCTACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
66 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
798385 CTTAAAGATGA
131 CTTAAAGATGA
* *
798396 AGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGACTTAAAGGTGCTAATGTGCTGATTCAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
798461 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
66 GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
798526 CTTAAAGATGA
131 CTTAAAGATGA
* * * * *
798537 AGATGCCAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
798582 ACGAAGGTGC
Statistics
Matches: 300, Mismatches: 26, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
140 80 0.27
141 220 0.73
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (141 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAA
GGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGG
CTTAAAGATGA
Found at i:798441 original size:22 final size:21
Alignment explanation
Indices: 798416--798483 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 21
798406 ATGCTGATTT
798416 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTA-ATTGGACTTA
* *
798438 AAGG--TGCTAATGTGCTGA-TTC
1 AAGGCCAGCTAAT-TG--GACTTA
798459 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTA-ATTGGACTTA
798481 AAG
1 AAG
798484 ATAAAGGTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 8 0.23
22 11 0.31
23 6 0.17
24 2 0.06
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (21 bp):
AAGGCCAGCTAATTGGACTTA
Found at i:798680 original size:33 final size:33
Alignment explanation
Indices: 798627--798726 Score: 137
Period size: 33 Copynumber: 3.0 Consensus size: 33
798617 TATTGGGCTT
* * *
798627 AGAAGGGTTGCCTCCAACTTGTGTGGGCTTTAG
1 AGAATGGTTGCCACCGACTTGTGTGGGCTTTAG
**
798660 AGAATGGTTGCCACCGACTTGTGTAAGCTTTAG
1 AGAATGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
798693 AGAGTGGTTGCCACCGACTTGTGTGGGTTTTAG
1 AGAATGGTTGCCACCGACTTGTGTGGGCTTTAG
798726 A
1 A
798727 AAGAAAAAGA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (33 bp):
AGAATGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:798831 original size:27 final size:27
Alignment explanation
Indices: 798800--799123 Score: 180
Period size: 27 Copynumber: 10.7 Consensus size: 27
798790 GGAAAAAGAC
*
798800 TGCCACGGAGTTGTGGGCTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
798827 TGCCATGGAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
*
798859 ACTGCCACGGAGTTGTGGGCTTAAAAGGG
1 --TGCCACGGAGTTGTGGACTTAAAAGGG
*
798888 TGCCACGGAGTTATGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
* *
798920 ACTGCCACAGAGTTGTGGGCTTAAAAGGG
1 --TGCCACGGAGTTGTGGACTTAAAAGGG
798949 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGGG
1 TGCCACGGAGTTGTGGACTT--------AAAAGGG
** *
798984 TGCCACAAAGTCGTGGACTTAAAAGGGAAAAAGGG
1 TGCCACGGAGTTGTGGACTT--------AAAAGGG
** *
799019 TGCCATAGAGTCGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
799046 TGCCACGGAGTTGTGGGCTTTAAAAAGAG
1 TGCCACGGAGTTGTGGAC-TT-AAAAGGG
* * *
799075 TGCCATGGAGTTGTGGGCTTTAAAAAGAG
1 TGCCACGGAGTTGTGGAC-TT-AAAAGGG
*
799104 TGCCACGGAGTCGTGGACTT
1 TGCCACGGAGTTGTGGACTT
799124 TGAAGAAAAG
Statistics
Matches: 247, Mismatches: 26, Indels: 47
0.77 0.08 0.15
Matches are distributed among these distances:
27 87 0.35
28 4 0.02
29 51 0.21
32 2 0.01
34 47 0.19
35 56 0.23
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:798853 original size:61 final size:61
Alignment explanation
Indices: 798729--798979 Score: 430
Period size: 61 Copynumber: 4.1 Consensus size: 61
798719 GTTTTAGAAA
* * * *
798729 GAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAAAGGGTGCCACCGAGTTGTGGACTTAGAAG
1 GAAAAAGACTGCCACGGAGTTGTGGGC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
*
798791 GAAAAAGACTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAAG
1 GAAAAAGACTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
*
798852 GAAAAAGACTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTATGGACTTAAAAG
1 GAAAAAGACTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
*
798913 GAAAAAGACTGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
1 GAAAAAGACTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
798974 GAAAAA
1 GAAAAA
798980 AGGGTGCCAC
Statistics
Matches: 180, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
61 155 0.86
62 25 0.14
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (61 bp):
GAAAAAGACTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
Found at i:799045 original size:35 final size:35
Alignment explanation
Indices: 798942--799045 Score: 163
Period size: 35 Copynumber: 3.0 Consensus size: 35
798932 TTGTGGGCTT
* * *
798942 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAAGGGTGCCACAGAGTCGTGGACTTAAAAGGGA
*
798977 AAAAGGGTGCCACAAAGTCGTGGACTTAAAAGGGA
1 AAAAGGGTGCCACAGAGTCGTGGACTTAAAAGGGA
*
799012 AAAAGGGTGCCATAGAGTCGTGGACTTAAAAGGG
1 AAAAGGGTGCCACAGAGTCGTGGACTTAAAAGGG
799046 TGCCACGGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.34, T:0.16
Consensus pattern (35 bp):
AAAAGGGTGCCACAGAGTCGTGGACTTAAAAGGGA
Found at i:799046 original size:97 final size:97
Alignment explanation
Indices: 798881--799070 Score: 274
Period size: 97 Copynumber: 2.0 Consensus size: 97
798871 TTGTGGGCTT
** * * *
798881 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGACTGCCACAGAGTTGTGGGCTTAAAA
1 AAAAGGGTGCCACAAAGTCATGGACTTAAAAGGAAAAAGACTGCCACAGAGTCGTGGACTTAAAA
798946 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
66 GGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* ** *
798977 AAAAGGGTGCCACAAAGTCGTGGACTTAAAAGGGAAAAAGGGTGCCATAGAGTCGTGGACTTAAA
1 AAAAGGGTGCCACAAAGTCATGGACTTAAAA-GGAAAAAGACTGCCACAGAGTCGTGGACTTAAA
*
799042 AGGGTGCCACGGAGTTGTGGGCTTTAAAA
65 AGGGTGCCACGGAGTTGTGGACTTTAAAA
799071 AGAGTGCCAT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 27 0.33
97 49 0.60
98 6 0.07
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.19
Consensus pattern (97 bp):
AAAAGGGTGCCACAAAGTCATGGACTTAAAAGGAAAAAGACTGCCACAGAGTCGTGGACTTAAAA
GGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
Found at i:799077 original size:29 final size:29
Alignment explanation
Indices: 799039--799124 Score: 136
Period size: 29 Copynumber: 3.0 Consensus size: 29
799029 TCGTGGACTT
*
799039 AAAAGGGTGCCACGGAGTTGTGGGCTTTA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTA
*
799068 AAAAGAGTGCCATGGAGTTGTGGGCTTTA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTTA
* *
799097 AAAAGAGTGCCACGGAGTCGTGGACTTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTTT
799125 GAAGAAAAGA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.24
Consensus pattern (29 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTTTA
Found at i:799147 original size:31 final size:30
Alignment explanation
Indices: 799026--799247 Score: 156
Period size: 31 Copynumber: 7.5 Consensus size: 30
799016 GGGTGCCATA
* * *
799026 GAGTCGTGGAC-TT-A-AAAGGGTGCCACG
1 GAGTCGTGGACTTTGAGAAAAGATGCCACT
* *
799053 GAGTTGTGGGCTTT-A-AAAAGAGTGCCA-T
1 GAGTCGTGGACTTTGAGAAAAGA-TGCCACT
* * *
799081 GGAGTTGTGGGCTTT-A-AAAAGAGTGCCACG
1 -GAGTCGTGGACTTTGAGAAAAGA-TGCCACT
799111 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTTG-AGAAAAGATGCCACT
* ** * *
799142 AAGTCGTGGACTTAAAGATGATGATGCCACT
1 GAGTCGTGGACTTTGAGA-AAAGATGCCACT
* *
799173 GAGTCATGGACTTTGAGACAAA-ATGCCATT
1 GAGTCGTGGACTTTGAGA-AAAGATGCCACT
* * *
799203 GAGTCGTGGGCTTTGAGAAGAGATTGCCATT
1 GAGTCGTGGACTTTGAGAAAAGA-TGCCACT
799234 GAGTCGTGGACTTT
1 GAGTCGTGGACTTT
799248 AAAAAGGTAT
Statistics
Matches: 159, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
27 9 0.06
28 7 0.04
29 46 0.29
30 27 0.17
31 64 0.40
32 6 0.04
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (30 bp):
GAGTCGTGGACTTTGAGAAAAGATGCCACT
Found at i:799237 original size:61 final size:60
Alignment explanation
Indices: 799019--799247 Score: 177
Period size: 61 Copynumber: 3.8 Consensus size: 60
799009 GGAAAAAGGG
* * * * * * *
799019 TGCCATAGAGTCGTGGAC-TTAAAAG-GGTGCCACGGAGTTGTGGGCTTT--A-AAAAGA
1 TGCCATTGAGTCGTGGGCTTTAGAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA
* * * *
799074 GTGCCATGGAGTTGTGGGCTTTA-AAAAGAGTGCCACGGAGTCGTGGACTTTGAAGAAAAGA
1 -TGCCATTGAGTCGTGGGCTTTAGAAGAGA-TGCCACTGAGTCGTGGACTTTGAAGAAAAGA
* * * * * *
799135 TGCCACTAAGTCGTGGACTTAAAGATGATGATGCCACTGAGTCATGGACTTTG-AGACAAA-A
1 TGCCATTGAGTCGTGGGCTT-TAGAAGA-GATGCCACTGAGTCGTGGACTTTGAAGA-AAAGA
*
799196 TGCCATTGAGTCGTGGGCTTTGAGAAGAGATTGCCATTGAGTCGTGGACTTT
1 TGCCATTGAGTCGTGGGCTTT-AGAAGAGA-TGCCACTGAGTCGTGGACTTT
799248 AAAAAGGTAT
Statistics
Matches: 137, Mismatches: 24, Indels: 19
0.76 0.13 0.11
Matches are distributed among these distances:
56 17 0.12
57 4 0.03
58 19 0.14
60 18 0.13
61 52 0.38
62 25 0.18
63 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (60 bp):
TGCCATTGAGTCGTGGGCTTTAGAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA
Found at i:800489 original size:18 final size:18
Alignment explanation
Indices: 800466--800505 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
800456 GATCAAGGAT
800466 CATTTTTGTTCATATGGG
1 CATTTTTGTTCATATGGG
800484 CATTTTTGTTCATATGGG
1 CATTTTTGTTCATATGGG
800502 CATT
1 CATT
800506 CATGTCCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.17, C:0.12, G:0.20, T:0.50
Consensus pattern (18 bp):
CATTTTTGTTCATATGGG
Found at i:800588 original size:21 final size:22
Alignment explanation
Indices: 800552--800610 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
800542 TGATTTTGCC
*
800552 TTTACATTTT-TTTTTTGTGTG
1 TTTACTTTTTATTTTTTGTGTG
* *
800573 TTT-TTTTTTATTTTTTTTGTG
1 TTTACTTTTTATTTTTTGTGTG
*
800594 TTTACTTTTGATTTTTT
1 TTTACTTTTTATTTTTT
800611 TTTTGTCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 4 0.13
21 16 0.52
22 11 0.35
ACGTcount: A:0.08, C:0.03, G:0.10, T:0.78
Consensus pattern (22 bp):
TTTACTTTTTATTTTTTGTGTG
Found at i:800611 original size:21 final size:23
Alignment explanation
Indices: 800560--800612 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
800550 CCTTTACATT
** *
800560 TTTTTTTTGTGTGTTTTTTTTTA
1 TTTTTTTTGTGTGTTACTTTTGA
800583 TTTTTTTTGTGT-TTACTTTTGA
1 TTTTTTTTGTGTGTTACTTTTGA
800605 TTTTTTTT
1 TTTTTTTT
800613 TTGTCAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.06, C:0.02, G:0.11, T:0.81
Consensus pattern (23 bp):
TTTTTTTTGTGTGTTACTTTTGA
Found at i:800613 original size:23 final size:24
Alignment explanation
Indices: 800559--800613 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
800549 GCCTTTACAT
** *
800559 TTTTTTTTTGTGTGTTTTTTTTTA
1 TTTTTTTTTGTGTGTTACTTTTGA
800583 -TTTTTTTTGTGT-TTACTTTTGA
1 TTTTTTTTTGTGTGTTACTTTTGA
800605 TTTTTTTTT
1 TTTTTTTTT
800614 TGTCAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.05, C:0.02, G:0.11, T:0.82
Consensus pattern (24 bp):
TTTTTTTTTGTGTGTTACTTTTGA
Found at i:800624 original size:22 final size:22
Alignment explanation
Indices: 800576--800624 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
800566 TTGTGTGTTT
* **
800576 TTTTTTATTTTTTTTGTGTTTA
1 TTTTTGATTTTTTTTGTGTCAA
* *
800598 CTTTTGATTTTTTTTTTGTCAA
1 TTTTTGATTTTTTTTGTGTCAA
800620 TTTTT
1 TTTTT
800625 TTTAAGGGAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.10, C:0.04, G:0.08, T:0.78
Consensus pattern (22 bp):
TTTTTGATTTTTTTTGTGTCAA
Found at i:807581 original size:19 final size:19
Alignment explanation
Indices: 807557--807654 Score: 85
Period size: 19 Copynumber: 5.8 Consensus size: 19
807547 AGTAGCTTCA
*
807557 TATGTATTGATACAACACT
1 TATGTATCGATACAACACT
*
807576 TATGTATTGAT---ACA--
1 TATGTATCGATACAACACT
807590 T-TGTATCGATACAACACT
1 TATGTATCGATACAACACT
807608 TATGTATCGAT---ACA--
1 TATGTATCGATACAACACT
807622 T-TGTATCGATACAACACT
1 TATGTATCGATACAACACT
*
807640 TATGTATTGATACAA
1 TATGTATCGATACAA
807655 ATCGTTGAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 24
0.71 0.02 0.26
Matches are distributed among these distances:
13 17 0.26
14 2 0.03
16 12 0.18
18 2 0.03
19 32 0.49
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:807600 original size:13 final size:13
Alignment explanation
Indices: 807578--807634 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
807568 ACAACACTTA
*
807578 TGTATTGATACAT
1 TGTATCGATACAT
807591 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
807609 ATGTATCGATACAT
1 -TGTATCGATACAT
807623 TGTATCGATACA
1 TGTATCGATACA
807635 ACACTTATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 20 0.54
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:807601 original size:32 final size:32
Alignment explanation
Indices: 807559--807653 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
807549 TAGCTTCATA
*
807559 TGTATTGATACAACACTTATGTATTGATACAT
1 TGTATCGATACAACACTTATGTATTGATACAT
*
807591 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATTGATACAT
807623 TGTATCGATACAACACTTATGTATTGATACA
1 TGTATCGATACAACACTTATGTATTGATACA
807654 AATCGTTGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATTGATACAT
Found at i:808715 original size:20 final size:21
Alignment explanation
Indices: 808689--808738 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
808679 TCAAGCATGA
808689 ATCGATACATT-CACTTA-TGT
1 ATCGATACATTGC-CTTATTGT
*
808709 ATTGATACATTGCCTTATTGT
1 ATCGATACATTGCCTTATTGT
808730 ATCGATACA
1 ATCGATACA
808739 AATTGTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (21 bp):
ATCGATACATTGCCTTATTGT
Found at i:808736 original size:21 final size:20
Alignment explanation
Indices: 808665--808738 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 20
808655 CACATGGTCC
***
808665 TGTATCGATACATTTCAAGCA
1 TGTATCGATACA-TTCACTTA
*
808686 TGAATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
*
808706 TGTATTGATACATTGC-CTTA
1 TGTATCGATACATT-CACTTA
808726 TTGTATCGATACA
1 -TGTATCGATACA
808739 AATTGTTGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 21 0.48
21 23 0.52
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:809278 original size:112 final size:113
Alignment explanation
Indices: 809063--809277 Score: 249
Period size: 112 Copynumber: 1.9 Consensus size: 113
809053 AGCTTGGAAG
* * * * *
809063 AACATTAAATTTGTTTGATTTTCAAAGAAATTCATACTTTATACAACTTGATCTATTCGTGGCTA
1 AACATTAAATTTGTCTGATTTTCAAAGAAATTCATACTCTAAACAACTTGATCCATTCGTGCCTA
* * *
809128 GGAAAATGAGGCACGTATCCTATGAGTTTTAAAATTTTTGAGCCAAAC
66 GGAAAATGAAGCACGTATCCCATCAGTTTTAAAATTTTTGAGCCAAAC
** * * *
809176 AACATTAAATTTGTCTGATTTT-TGAGAAATTCATGCTCTAAACGA-TCTGATCCATTTGTGCCT
1 AACATTAAATTTGTCTGATTTTCAAAGAAATTCATACTCTAAACAACT-TGATCCATTCGTGCCT
* *
809239 AGGAAAAT-AAGCATGTA-CCACATCAGTTTTGAAATTTTT
65 AGGAAAATGAAGCACGTATCC-CATCAGTTTTAAAATTTTT
809278 TAGGTCCACC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
110 2 0.02
111 24 0.28
112 38 0.45
113 21 0.25
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (113 bp):
AACATTAAATTTGTCTGATTTTCAAAGAAATTCATACTCTAAACAACTTGATCCATTCGTGCCTA
GGAAAATGAAGCACGTATCCCATCAGTTTTAAAATTTTTGAGCCAAAC
Found at i:810344 original size:89 final size:90
Alignment explanation
Indices: 810104--810356 Score: 304
Period size: 89 Copynumber: 2.8 Consensus size: 90
810094 CATATATTTT
* *
810104 TTCCCAATCATATCCCCTTCACCCAACCACTAGATGGTATTGATGCATCACAAAGCCTA-ATTTC
1 TTCCCAATCATATCCCTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTAGATTTC
810168 CTTAGGGCAAGATGCAGCCCACACA
66 CTTAGGGCAAGATGCAGCCCACACA
* * * * *
810193 TTCCTAATCATATCCCTCTT--TCCCAACCACTAGATAGTATTAACGTATCACAAAGCCT-GATT
1 TTCCCAATCATATCCCT-TTCAT-CCAACCACTAGATGGTATTGATGCATCACAAAGCCTAGATT
*
810255 T-CTTTGAGGCAACG-TGCAGCCCACACA
64 TCCTTAG-GGCAA-GATGCAGCCCACACA
* * * * *
810282 TTCCCAATCATATCCCTTTCATTCAACCACTAGATGGTATTGATGCATTATAAAG-TTAGATTTT
1 TTCCCAATCATATCCCTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTAGATTTC
810346 CTTAGGGCAAG
66 CTTAGGGCAAG
810357 GATATCTTGA
Statistics
Matches: 137, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
88 8 0.06
89 121 0.88
90 8 0.06
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (90 bp):
TTCCCAATCATATCCCTTTCATCCAACCACTAGATGGTATTGATGCATCACAAAGCCTAGATTTC
CTTAGGGCAAGATGCAGCCCACACA
Found at i:810995 original size:43 final size:43
Alignment explanation
Indices: 810929--811337 Score: 190
Period size: 43 Copynumber: 9.6 Consensus size: 43
810919 CTGTCGACTC
* * *
810929 AGTCCCCGGTAAACCCCTTATCCCTTTAGTGACCTATCGGCTT
1 AGTCCTCGATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
* * * * ** *
810972 ATTCCACGATCAACCCTTTATCCC-TT-GTTTACCTATCAACTC
1 AGTCCTCGATAAACCCTTTATCCCTTTAG-TGACCTATCGGCTT
* * * * * *
811014 AGTCCCTCAATAAACCTTTTTTCCCCTTAG-GAACTTGTCGGCTT
1 AGT-CCTCGATAAACCCTTTATCCCTTTAGTG-ACCTATCGGCTT
* * * * *
811058 AGTCCTCAATCAACCCTTCATCCC-TTATTGACCTATC-ACTT
1 AGTCCTCGATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
* * * * * *
811099 ACTCCTCGGTAAACCCCTTATCTCTTTAGTGACCTGTTGGCTT
1 AGTCCTCGATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
* * * * * * ** *
811142 AGTCCCCGATCAACCCTTCAT-CCTTTATTTACCTGTTAGCTC
1 AGTCCTCGATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
* * * * *
811184 AATCTTCGATAAACCCTTTATCCCCTTGGTGACCTATTGGCTT
1 AGTCCTCGATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
* * * * * *
811227 AGTCCTC-AGTTAACCCTTCAT-CCTTT-GTTTACCTGTCGACTC
1 AGTCCTCGA-TAAACCCTTTATCCCTTTAG-TGACCTATCGGCTT
* * * * *
811269 AGT-CTCTGGTAAACCCCTTATCCCCTTAGTGACCTGTCAGCTT
1 AGTCCTC-GATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
* * * *
811312 AATCCCCGATTAACCCTTCATCCCTT
1 AGTCCTCGATAAACCCTTTATCCCTT
811338 CGATAAACCC
Statistics
Matches: 261, Mismatches: 89, Indels: 32
0.68 0.23 0.08
Matches are distributed among these distances:
41 25 0.10
42 90 0.34
43 130 0.50
44 15 0.06
45 1 0.00
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.35
Consensus pattern (43 bp):
AGTCCTCGATAAACCCTTTATCCCTTTAGTGACCTATCGGCTT
Found at i:811007 original size:42 final size:42
Alignment explanation
Indices: 810906--811018 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 42
810896 ACCACTTTTC
* * *
810906 ATCCCTTGTTTACCTGTCGACTCAGTCCCCGGTAAACCCCTT
1 ATCCCTTGTTTACCTATCGACTCAGTCCACGATAAACCCCTT
* * * * * *
810948 ATCCCTT-TAGTGACCTATCGGCTTATTCCACGATCAACCCTTT
1 ATCCCTTGT--TTACCTATCGACTCAGTCCACGATAAACCCCTT
*
810991 ATCCCTTGTTTACCTATCAACTCAGTCC
1 ATCCCTTGTTTACCTATCGACTCAGTCC
811019 CTCAATAAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
41 1 0.02
42 21 0.39
43 31 0.57
44 1 0.02
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (42 bp):
ATCCCTTGTTTACCTATCGACTCAGTCCACGATAAACCCCTT
Found at i:811159 original size:42 final size:41
Alignment explanation
Indices: 811108--811334 Score: 116
Period size: 42 Copynumber: 5.3 Consensus size: 41
811098 TACTCCTCGG
811108 TAAACCCCTTATCTCTTTAGTGACCTGTTGGCTTAGTCCCCGA
1 TAAA-CCCTTATC-CTTTAGTGACCTGTTGGCTTAGTCCCCGA
* * * * * * **
811151 TCAACCCTTCATCCTTTATTTACCTGTTAGCTCAATCTTCGA
1 TAAACCCTT-ATCCTTTAGTGACCTGTTGGCTTAGTCCCCGA
* * * *
811193 TAAACCCTTTATCCCCTTGGTGACCTATTGGCTTAGTCCTC-A
1 TAAACCC-TTAT-CCTTTAGTGACCTGTTGGCTTAGTCCCCGA
* * * * * * * *
811235 GTTAACCCTTCATCCTTT-GTTTACCTGTCGACTCAGTCTCTGG
1 -TAAACCCTT-ATCCTTTAG-TGACCTGTTGGCTTAGTCCCCGA
* ** *
811278 TAAACCCCTTATCCCCTTAGTGACCTGTCAGCTTAATCCCCGA
1 TAAA-CCCTTAT-CCTTTAGTGACCTGTTGGCTTAGTCCCCGA
*
811321 TTAACCCTTCATCC
1 TAAACCCTT-ATCC
811335 CTTCGATAAA
Statistics
Matches: 133, Mismatches: 40, Indels: 23
0.68 0.20 0.12
Matches are distributed among these distances:
41 1 0.01
42 67 0.50
43 64 0.48
44 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.12, T:0.36
Consensus pattern (41 bp):
TAAACCCTTATCCTTTAGTGACCTGTTGGCTTAGTCCCCGA
Found at i:811230 original size:85 final size:85
Alignment explanation
Indices: 810903--811337 Score: 371
Period size: 85 Copynumber: 5.1 Consensus size: 85
810893 GGTACCACTT
* * * * * *
810903 TTCATCCCTTGTTTACCTGTC-GACTCAGTCCCCGGTAAACCCCTTATCCCTTTAGTGACCTATC
1 TTCATCCCTTATTTACCTATCAG-CTCAGTCCTCGATAAACCCCTTATCCCCTTAGTGACCTATT
* *
810967 GGCTTATTCCACGATCAACCC
65 GGCTTAGTCCCCGATCAACCC
* * * * ** * *
810988 TTTATCCCTTGTTTACCTATCAACTCAGTCCCTCAATAAACCTTTTTTCCCCTTAG-GAACT-TG
1 TTCATCCCTTATTTACCTATCAGCTCAGT-CCTCGATAAACCCCTTATCCCCTTAGTGACCTAT-
* *
811051 TCGGCTTAGTCCTCAATCAACCC
64 T-GGCTTAGTCCCCGATCAACCC
* * * * * * *
811074 TTCATCCCTTATTGACCTATCA-CTTACTCCTCGGTAAACCCCTTATCTCTTTAGTGACCTGTTG
1 TTCATCCCTTATTTACCTATCAGCTCAGTCCTCGATAAACCCCTTATCCCCTTAGTGACCTATTG
811138 GCTTAGTCCCCGATCAACCC
66 GCTTAGTCCCCGATCAACCC
* * * * * * *
811158 TTCATCCTTTATTTACCTGTTAGCTCAATCTTCGATAAACCCTTTATCCCCTTGGTGACCTATTG
1 TTCATCCCTTATTTACCTATCAGCTCAGTCCTCGATAAACCCCTTATCCCCTTAGTGACCTATTG
* *
811223 GCTTAGTCCTC-AGTTAACCC
66 GCTTAGTCCCCGA-TCAACCC
* * * * *
811243 TTCATCCTTTGTTTACCTGTC-GACTCAGT-CTCTGGTAAACCCCTTATCCCCTTAGTGACCTGT
1 TTCATCCCTTATTTACCTATCAG-CTCAGTCCTC-GATAAACCCCTTATCCCCTTAGTGACCTAT
** * *
811306 CAGCTTAATCCCCGATTAACCC
64 TGGCTTAGTCCCCGATCAACCC
811328 TTCATCCCTT
1 TTCATCCCTT
811338 CGATAAACCC
Statistics
Matches: 281, Mismatches: 58, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
84 61 0.22
85 162 0.58
86 58 0.21
ACGTcount: A:0.20, C:0.34, G:0.11, T:0.35
Consensus pattern (85 bp):
TTCATCCCTTATTTACCTATCAGCTCAGTCCTCGATAAACCCCTTATCCCCTTAGTGACCTATTG
GCTTAGTCCCCGATCAACCC
Found at i:811282 original size:170 final size:170
Alignment explanation
Indices: 810903--811337 Score: 518
Period size: 170 Copynumber: 2.6 Consensus size: 170
810893 GGTACCACTT
* *
810903 TTCATCCCTTGTTTACCTGTCGACTCAGTCCCCGGTAAACCCCTTATCCCTTTAGTGACCTATCG
1 TTCATCCCTTGTTTACCTGTCGACTCAGT-CCTGGTAAACCCCTTATCCCTTTAGTGACCTGTCG
* * * * * *
810968 GCTTATTCCACGATCAACCCTTTATCCCTTGTTTACCTATCAACTCAGTCCCTCAATAAACCTTT
65 GCTTAATCCCCGATCAACCCTTCATCCCTTATTTACCTATCAACTCAATCCCTCAATAAACCCTT
*
811033 TTTCCCCTTAGGAACTTGTCGGCTTAGTCCTCAATCAACCC
130 TATCCCCTTAGGAACTTGTCGGCTTAGTCCTCAATCAACCC
* * * * * * *
811074 TTCATCCCTTATTGACCTATC-ACTTACTCCTCGGTAAACCCCTTATCTCTTTAGTGACCTGTTG
1 TTCATCCCTTGTTTACCTGTCGACTCAGTCCT-GGTAAACCCCTTATCCCTTTAGTGACCTGTCG
* * * * * * *
811138 GCTTAGTCCCCGATCAACCCTTCATCCTTTATTTACCTGTTAGCTCAAT-CTTCGATAAACCCTT
65 GCTTAATCCCCGATCAACCCTTCATCCCTTATTTACCTATCAACTCAATCCCTCAATAAACCCTT
* * * *
811202 TATCCCCTTGGTGACCTAT-T-GGCTTAGTCCTCAGTTAACCC
130 TATCCCCTTAG-GAACT-TGTCGGCTTAGTCCTCAATCAACCC
* * *
811243 TTCATCCTTTGTTTACCTGTCGACTCAGTCTCTGGTAAACCCCTTATCCCCTTAGTGACCTGTCA
1 TTCATCCCTTGTTTACCTGTCGACTCAGTC-CTGGTAAACCCCTTATCCCTTTAGTGACCTGTCG
*
811308 GCTTAATCCCCGATTAACCCTTCATCCCTT
65 GCTTAATCCCCGATCAACCCTTCATCCCTT
811338 CGATAAACCC
Statistics
Matches: 220, Mismatches: 39, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
169 59 0.27
170 140 0.64
171 21 0.10
ACGTcount: A:0.20, C:0.34, G:0.11, T:0.35
Consensus pattern (170 bp):
TTCATCCCTTGTTTACCTGTCGACTCAGTCCTGGTAAACCCCTTATCCCTTTAGTGACCTGTCGG
CTTAATCCCCGATCAACCCTTCATCCCTTATTTACCTATCAACTCAATCCCTCAATAAACCCTTT
ATCCCCTTAGGAACTTGTCGGCTTAGTCCTCAATCAACCC
Found at i:811390 original size:63 final size:63
Alignment explanation
Indices: 811278--811400 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
811268 CAGTCTCTGG
* * *
811278 TAAACCCCTTATCCCCTTAGTGACCTGTCAGCTTAATCCCCGATTAACCCTTCATCCCTTCGA
1 TAAACCCCTTATCCCCTCAGTGACCTGTCAGCTTAATCCCAGATCAACCCTTCATCCCTTCGA
* * * *
811341 TAAACCCCTTATCCCCTCAGTGACTTGTCAGCTTAGTCCTTAG-TCAACCCTTTATCCCTT
1 TAAACCCCTTATCCCCTCAGTGACCTGTCAGCTTAATCC-CAGATCAACCCTTCATCCCTT
811401 GTTTACTTGT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
63 51 0.98
64 1 0.02
ACGTcount: A:0.21, C:0.37, G:0.10, T:0.33
Consensus pattern (63 bp):
TAAACCCCTTATCCCCTCAGTGACCTGTCAGCTTAATCCCAGATCAACCCTTCATCCCTTCGA
Found at i:811438 original size:85 final size:85
Alignment explanation
Indices: 811341--811744 Score: 396
Period size: 85 Copynumber: 4.8 Consensus size: 85
811331 ATCCCTTCGA
* * * *
811341 TAAACCCCTTATCCCCTCAGTGACTTGTCAGCTTAGTCCTTAGTCAACCCTTTATCCCTTGTTTA
1 TAAACCCCTTATCCCCTCGGTGACCTATCAGCTTAGTCCTCAGTCAACCCTTTATCCCTTGTTTA
* * *
811406 CTTGTTAGCTTAGTCC-CTAG
66 CCTATTAGCTCAGTCCTC-AG
* * * *
811426 TAAACCCCTTATCCCCTCGGTGACCTATCA-C-----CCTGA-TCGACCCTTCATCCTTTGTTTA
1 TAAACCCCTTATCCCCTCGGTGACCTATCAGCTTAGTCCTCAGTCAACCCTTTATCCCTTGTTTA
811484 CCTATTAGCTCAGTCCTCAG
66 CCTATTAGCTCAGTCCTCAG
* * * * *
811504 TAAACCCCTTATCCTCTCGGTGACCTATCGGCTTAGTCCCCAGTCAACCCTTCATCACTTGTTTA
1 TAAACCCCTTATCCCCTCGGTGACCTATCAGCTTAGTCCTCAGTCAACCCTTTATCCCTTGTTTA
* **
811569 CCTATTAGCTTAGTCCTTGG
66 CCTATTAGCTCAGTCCTCAG
* * * * *
811589 TAAACCCTTTATCCTCTTGGTGACCTATC-GACTTAGTCCTCGGTCAA-CCTTTCATCCCTTATT
1 TAAACCCCTTATCCCCTCGGTGACCTATCAG-CTTAGTCCTCAGTCAACCCTTT-ATCCCTTGTT
* *
811652 TACCTGTTAGCTCAGTCCTCGG
64 TACCTATTAGCTCAGTCCTCAG
* * ** * * * * *
811674 TAAACCCTTTATCCCTTTAGTGAACTATCGGCTTAGTCCCCAATCAACCCTTTATCTCTTGTTTA
1 TAAACCCCTTATCCCCTCGGTGACCTATCAGCTTAGTCCTCAGTCAACCCTTTATCCCTTGTTTA
811739 CCTATT
66 CCTATT
811745 GGCCTAATCC
Statistics
Matches: 267, Mismatches: 40, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
78 62 0.23
79 6 0.02
84 9 0.03
85 184 0.69
86 6 0.02
ACGTcount: A:0.19, C:0.32, G:0.12, T:0.36
Consensus pattern (85 bp):
TAAACCCCTTATCCCCTCGGTGACCTATCAGCTTAGTCCTCAGTCAACCCTTTATCCCTTGTTTA
CCTATTAGCTCAGTCCTCAG
Found at i:811530 original size:43 final size:42
Alignment explanation
Indices: 811483--811629 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 42
811473 TCCTTTGTTT
*
811483 ACCTATTAGCTCAGTCCTCAGTAAACCCCTTATCCTCTCGGTG
1 ACCTATTAGCTTAGTCCTCAGTAAACCCCTTATCCTCT-GGTG
** * * * *
811526 ACCTATCGGCTTAGTCCCCAGTCAA-CCCTTCATCACT-TGTTT
1 ACCTATTAGCTTAGTCCTCAGTAAACCCCTT-ATC-CTCTGGTG
** *
811568 ACCTATTAGCTTAGTCCTTGGTAAACCCTTTATCCTCTTGGTG
1 ACCTATTAGCTTAGTCCTCAGTAAACCCCTTATCCTC-TGGTG
*
811611 ACCTA-TCGACTTAGTCCTC
1 ACCTATTAG-CTTAGTCCTC
811630 GGTCAACCTT
Statistics
Matches: 80, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.03
42 31 0.39
43 45 0.56
44 2 0.03
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.34
Consensus pattern (42 bp):
ACCTATTAGCTTAGTCCTCAGTAAACCCCTTATCCTCTGGTG
Found at i:811540 original size:163 final size:165
Alignment explanation
Indices: 811341--811744 Score: 481
Period size: 170 Copynumber: 2.4 Consensus size: 165
811331 ATCCCTTCGA
* * * ** *
811341 TAAACCCCTTATCCCCTCAGTGACTTGTCAGCTTAGTCCTTAGTCAACCCTTTATCCCTTGTTTA
1 TAAACCCCTTAT-CCCTCAGTGACCTATCGGCTTAGTCCCCAGTCAACCCTTTATCACTTGTTTA
* * *
811406 CTTGTTAGCTTAGTCCCTAGTAAACCCCTTATCCCCTCGGTGACCTATC-AC-CCT-GATCGACC
65 CCTATTAGCTTAGTCCCTAGTAAACCCCTTATCCCCTCGGTGACCTATCGACTCCTCGATCAACC
* *
811468 CTTCATCCTTTGTTTACCTATTAGCTCAGTCCTCAG
130 CTTCATCCCTTATTTACCTATTAGCTCAGTCCTCAG
* *
811504 TAAACCCCTTATCCTCTCGGTGACCTATCGGCTTAGTCCCCAGTCAACCCTTCATCACTTGTTTA
1 TAAACCCCTTATCC-CTCAGTGACCTATCGGCTTAGTCCCCAGTCAACCCTTTATCACTTGTTTA
* * * * * *
811569 CCTATTAGCTTAGTCCTTGGTAAACCCTTTATCCTCTTGGTGACCTATCGACTTAGTCCTCGGTC
65 CCTATTAGCTTAGTCCCTAGTAAACCCCTTATCCCCTCGGTGACCTATCGAC----TCCTCGATC
* * *
811634 AACCTTTCATCCCTTATTTACCTGTTAGCTCAGTCCTCGG
126 AACCCTTCATCCCTTATTTACCTATTAGCTCAGTCCTCAG
* * * * *
811674 TAAACCCTTTATCCCTTTAGTGAACTATCGGCTTAGTCCCCAATCAACCCTTTATCTCTTGTTTA
1 TAAACCCCTTATCCC-TCAGTGACCTATCGGCTTAGTCCCCAGTCAACCCTTTATCACTTGTTTA
811739 CCTATT
65 CCTATT
811745 GGCCTAATCC
Statistics
Matches: 203, Mismatches: 29, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
162 2 0.01
163 96 0.47
164 2 0.01
169 4 0.02
170 99 0.49
ACGTcount: A:0.19, C:0.32, G:0.12, T:0.36
Consensus pattern (165 bp):
TAAACCCCTTATCCCTCAGTGACCTATCGGCTTAGTCCCCAGTCAACCCTTTATCACTTGTTTAC
CTATTAGCTTAGTCCCTAGTAAACCCCTTATCCCCTCGGTGACCTATCGACTCCTCGATCAACCC
TTCATCCCTTATTTACCTATTAGCTCAGTCCTCAG
Found at i:811840 original size:84 final size:84
Alignment explanation
Indices: 811752--811964 Score: 213
Period size: 83 Copynumber: 2.5 Consensus size: 84
811742 ATTGGCCTAA
* *
811752 TCCCCAGTCCACCTTTCATCCCTTGTTTACCTATC-GCTCCA-TCCCTAATAAAACCCTTATCCC
1 TCCCCAGTCCACCCTTCATCCCTTGTTTACCTATCAGCT-CAGTCCCCAAT-AAACCCTTATCCC
* * *
811815 TTTGGTGGTTTG-CCGACTTAG
64 CTCGGT-GATTGACCGACTTAG
* * * * **
811836 TCCCCAATCAACCCTT-ATCCCTTGCTTACTTATCAGCTCAGTCCCCGGTAAACCCTTATCCCCT
1 TCCCCAGTCCACCCTTCATCCCTTGTTTACCTATCAGCTCAGTCCCCAATAAACCCTTATCCCCT
*
811900 CGGTGATTGATCGACTTAG
66 CGGTGATTGACCGACTTAG
* *
811919 TCCCC-GGCCAACCCTTCATCCCTTGTTTACCTGTC-GACTCAGTCCC
1 TCCCCAGTCC-ACCCTTCATCCCTTGTTTACCTATCAG-CTCAGTCCC
811965 TGGTAAATCT
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
82 5 0.05
83 55 0.52
84 45 0.43
ACGTcount: A:0.18, C:0.38, G:0.13, T:0.31
Consensus pattern (84 bp):
TCCCCAGTCCACCCTTCATCCCTTGTTTACCTATCAGCTCAGTCCCCAATAAACCCTTATCCCCT
CGGTGATTGACCGACTTAG
Found at i:812077 original size:85 final size:84
Alignment explanation
Indices: 811763--812084 Score: 287
Period size: 85 Copynumber: 3.8 Consensus size: 84
811753 CCCCAGTCCA
** ***
811763 CCTTTCATCCCTTGTTTACCTATC-GCTCCA-TCCCTAATAAAACCCTTATCC-CTTTGGTGGTT
1 CCTTT-ATCCCTTGTTTACCTATCGGCT-CAGTCCCTGGT-AAACCCTTATCCTC-TTGGTGACC
* *
811825 TGCCGACTTAGTCCCCAATCAAC
62 TGTCGACTTAGTCCCCGATCAAC
* * * * * * *
811848 CC-TTATCCCTTGCTTACTTATCAGCTCAGTCCCCGGTAAACCCTTATCCCCTCGGTGA-TTGAT
1 CCTTTATCCCTTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCTTATCCTCTTGGTGACCTG-T
**
811911 CGACTTAGTCCCCGGCCAAC
65 CGACTTAGTCCCCGATCAAC
* * * * * *
811931 CCTTCATCCCTTGTTTACCTGTCGACTCAGTCCCTGGTAAA-TCTTTTCTCTCTTTGATGACCTG
1 CCTTTATCCCTTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCTTATC-CTC-TTGGTGACCTG
*
811995 TCGACTTAGTCCCTGATCAAC
64 TCGACTTAGTCCCCGATCAAC
* * * *
812016 CCTTTATCCTTTGTTTACCTATTGGCTAAGTCCCTGGTAAACCCCTTATCCTCTTGGTGACCCGT
1 CCTTTATCCCTTGTTTACCTATCGGCTCAGTCCCTGGTAAA-CCCTTATCCTCTTGGTGACCTGT
812081 CGAC
65 CGAC
812085 CCAGTCTACG
Statistics
Matches: 190, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
82 3 0.02
83 59 0.31
84 44 0.23
85 74 0.39
86 5 0.03
87 5 0.03
ACGTcount: A:0.18, C:0.34, G:0.14, T:0.34
Consensus pattern (84 bp):
CCTTTATCCCTTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCTTATCCTCTTGGTGACCTGTC
GACTTAGTCCCCGATCAAC
Found at i:812486 original size:43 final size:43
Alignment explanation
Indices: 812367--812651 Score: 206
Period size: 42 Copynumber: 6.7 Consensus size: 43
812357 TTATCACCTC
* * *
812367 GGTGACCTATCGACTTAGTCCCCAGTTAACCCTTTATCC-TTT
1 GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTACCCTTTT
* * * * * * * *
812409 GTTTACTTATCGGCTCAATCCTCAG-TAAACCTTTACCCTTTT
1 GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTACCCTTTT
* * * * *
812451 GGTGACTTGTCAGCTTAGTCCCTGGTTAACCCTTTA-TCTTTT
1 GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTACCCTTTT
* * * * * * * *
812493 GTTTACTTATCGGCTGAGTCCCTGGTAAACCCCTTACACTTTT
1 GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTACCCTTTT
* *
812536 GGTGACCTATCGGCTTAGTCCCCGATTAACCCTTCATCCCTTATT
1 GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTA-CCCTT-TT
* * *
812581 --T-ACCTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTT
1 GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTACCCTTTT
* **
812621 GGTGACCTGTTAGCTTAG-CCTCCGGTTAACC
1 GGTGACCTATCGGCTTAGTCC-CCGGTTAACC
812652 TCCATCTTAT
Statistics
Matches: 186, Mismatches: 48, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
40 2 0.01
41 16 0.09
42 101 0.54
43 61 0.33
44 4 0.02
45 2 0.01
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.36
Consensus pattern (43 bp):
GGTGACCTATCGGCTTAGTCCCCGGTTAACCCTTTACCCTTTT
Found at i:812497 original size:169 final size:170
Alignment explanation
Indices: 812322--812691 Score: 444
Period size: 169 Copynumber: 2.2 Consensus size: 170
812312 CTTTTATCCC
* * * *
812322 TTGTTTACTTGTCAGCTTACTCCCCAGTAAACCCTTTATCAC-CTCGGTGACCTATCGACTTAGT
1 TTGTTTACTTGTCGGCTTAGTCCCAAGTAAACCCCTTA-CACTCTCGGTGACCTATCGACTTAGT
* * * * * *
812386 CCCC-AGTTAACCCTTTATCCTTTGTTTACTTATCGGCTCAATCCTCAGTAAA-CCTTTACCCTT
65 CCCCGA-TTAACCCTTCATCCCTTATTTACCTATCGGCTCAATCCCCAGTAAACCCCTTACCCTT
* * **
812449 TTGGTGACTTGTCAGCTTAGTCC-CTGGTTAACCCTTTATCTT-
129 TTGGTGACCTGTCAGCTTAG-CCTCCGGTTAA-CCTCCATCTTA
* * ** * * *
812491 TTGTTTACTTATCGGCTGAGTCCCTGGTAAACCCCTTACACTTTTGGTGACCTATCGGCTTAGTC
1 TTGTTTACTTGTCGGCTTAGTCCCAAGTAAACCCCTTACACTCTCGGTGACCTATCGACTTAGTC
* *
812556 CCCGATTAACCCTTCATCCCTTATTTACCTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTT
66 CCCGATTAACCCTTCATCCCTTATTTACCTATCGGCTCAATCCCCAGTAAACCCCTTACCCTTTT
*
812621 GGTGACCTGTTAGCTTAGCCTCCGGTTAACCTCCATCTTA
131 GGTGACCTGTCAGCTTAGCCTCCGGTTAACCTCCATCTTA
*
812661 TTGTTTACTTGTTGGCTTAGTCCCAAGTAAA
1 TTGTTTACTTGTCGGCTTAGTCCCAAGTAAA
812692 TTTCTTCATC
Statistics
Matches: 168, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
168 3 0.02
169 103 0.61
170 62 0.37
ACGTcount: A:0.19, C:0.30, G:0.15, T:0.37
Consensus pattern (170 bp):
TTGTTTACTTGTCGGCTTAGTCCCAAGTAAACCCCTTACACTCTCGGTGACCTATCGACTTAGTC
CCCGATTAACCCTTCATCCCTTATTTACCTATCGGCTCAATCCCCAGTAAACCCCTTACCCTTTT
GGTGACCTGTCAGCTTAGCCTCCGGTTAACCTCCATCTTA
Found at i:812609 original size:42 final size:42
Alignment explanation
Indices: 811465--812618 Score: 438
Period size: 42 Copynumber: 27.3 Consensus size: 42
811455 ACCCTGATCG
* * ** * * *
811465 ACCCTTCATCCTTTGTTTACCTATTAGCTCAGTCCTCAGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * *
811507 ACCCCTTATCCTCTCGGTGACCTATCGGCTTAGTCCCCAGTCA
1 ACCCTTTATCC-CTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * ** **
811550 ACCCTTCATCACTTGTTTACCTATTAGCTTAGTCCTTGGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * *
811592 ACCCTTTATCCTCTTGGTGACCTATCGACTTAGTCCTCGGTCA
1 ACCCTTTATCC-CTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * ** * *
811635 A-CCTTTCATCCCTTATTTACCTGTTAGCTCAGTCCTCGGTAA
1 ACCCTTT-ATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * ** *
811677 ACCCTTTATCCCTT-TAGTGAACTATCGGCTTAGTCCCCAATCA
1 ACCCTTTATCCCTTGT--TTACCTATCGGCTTAGTCCCCGGTAA
* * * * * **
811720 ACCCTTTATCTCTTGTTTACCTATTGGCCTAATCCCCAGTCC
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* ***
811762 A-CCTTTCATCCCTTGTTTACCTATC-GCTCCA-TCCCTAATAAA
1 ACCCTTT-ATCCCTTGTTTACCTATCGGCT-TAGTCCCCGGT-AA
* **** ** * ** *
811804 ACCC-TTATCCCTTTGGTGGTTTGCCGACTTAGTCCCCAATCA
1 ACCCTTTATCCC-TTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * *
811846 ACCC-TTATCCCTTGCTTACTTATCAGCTCAGTCCCCGGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * **
811887 ACCC-TTATCCCCTCGGTGA-TTGATCGACTTAGTCCCCGGCCA
1 ACCCTTTAT-CCCTTGTTTACCT-ATCGGCTTAGTCCCCGGTAA
* * * * *
811929 ACCCTTCATCCCTTGTTTACCTGTCGACTCAGTCCCTGGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * * * * * * *
811971 ATCTTTTCTCTCTTTGATGACCTGTCGACTTAGTCCCTGATCA
1 ACCCTTTATC-CCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * *
812014 ACCCTTTATCCTTTGTTTACCTATTGGCTAAGTCCCTGGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * ** * ** ** *
812056 ACCCCTTATCCTCTTGGTGACCCGTCGACCCAGTCTACGATAA
1 ACCCTTTATCC-CTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* ** * * * *
812099 ACCCTTTGTCCCCTTAATGACCTATCGGTTTAGTCCTCGGTCA
1 ACCCTTTAT-CCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * * * * *
812142 ACCCTTCATCTCTTATTTATCTGTCAGCTCAGTCCCCCGCAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * *
812184 ACCC-TTATCCCTTCAG-TGACTTATTGACTTAGTCCCCGGTCA
1 ACCCTTTATCCCTT--GTTTACCTATCGGCTTAGTCCCCGGTAA
* * *
812226 ACCCTTCATCCCTTGTTTACCTATCGGCTTAGTCCCTGATAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * * ** *
812268 A-TCTTGT-TCCCCTCGGTGACCTATCGGTTTAATCTTCGGTCA
1 ACCCTT-TAT-CCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * *
812310 ACCTTTTATCCCTTGTTTACTTGTCAGCTTACTCCCCAGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * *
812352 ACCCTTTATCACCTCGGTGACCTATCGACTTAGTCCCCAGTTA
1 ACCCTTTATC-CCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * * *
812395 ACCCTTTATCCTTTGTTTACTTATCGGCTCAATCCTCAGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * * *
812437 A-CCTTTA-CCCTT-TTGGTGACTTGTCAGCTTAGTCCCTGGTTA
1 ACCCTTTATCCCTTGTT--T-ACCTATCGGCTTAGTCCCCGGTAA
** * * *
812479 ACCCTTTATCTTTTGTTTACTTATCGGCTGAGTCCCTGGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
* * * *
812521 ACCCCTTA-CACTT-TTGGTGACCTATCGGCTTAGTCCCCGATTA
1 ACCCTTTATCCCTTGTT--T-ACCTATCGGCTTAGTCCCCGGTAA
* * *
812564 ACCCTTCATCCCTTATTTACCTATCGGCTCAGTCCCCGGTAA
1 ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
*
812606 ACCCCTTA-CCCTT
1 ACCCTTTATCCCTT
812619 TTGGTGACCT
Statistics
Matches: 801, Mismatches: 270, Indels: 83
0.69 0.23 0.07
Matches are distributed among these distances:
39 2 0.00
40 6 0.01
41 74 0.09
42 436 0.54
43 269 0.34
44 10 0.01
45 4 0.00
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.35
Consensus pattern (42 bp):
ACCCTTTATCCCTTGTTTACCTATCGGCTTAGTCCCCGGTAA
Found at i:812637 original size:85 final size:85
Alignment explanation
Indices: 812309--812651 Score: 338
Period size: 85 Copynumber: 4.0 Consensus size: 85
812299 ATCTTCGGTC
* * * * * * * * *
812309 AACCTTTTATCCCTTGTTTACTTGTCAGCTTACTCCCCAGTAAACCCTTTATCACC--TCGGTGA
1 AACCCTTTATCCTTTGTTTACTTATCGGCTCAGTCCCCGGTAAACCCCTTA-C-CCTTTTGGTGA
*
812372 CCTATC-GACTTAGTCCCC-AGTT
64 CCTGTCAG-CTTAGTCCCCGA-TT
* * * * *
812394 AACCCTTTATCCTTTGTTTACTTATCGGCTCAATCCTCAGTAAA-CCTTTACCCTTTTGGTGACT
1 AACCCTTTATCCTTTGTTTACTTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTTGGTGACC
* *
812458 TGTCAGCTTAGTCCCTGGTT
66 TGTCAGCTTAGTCCCCGATT
* * * *
812478 AACCCTTTATCTTTTGTTTACTTATCGGCTGAGTCCCTGGTAAACCCCTTACACTTTTGGTGACC
1 AACCCTTTATCCTTTGTTTACTTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTTGGTGACC
* *
812543 TATCGGCTTAGTCCCCGATT
66 TGTCAGCTTAGTCCCCGATT
* * * *
812563 AACCCTTCATCCCTTATTTACCTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTTGGTGACC
1 AACCCTTTATCCTTTGTTTACTTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTTGGTGACC
* *
812628 TGTTAGCTTAG-CCTCCGGTT
66 TGTCAGCTTAGTCC-CCGATT
812648 AACC
1 AACC
812652 TCCATCTTAT
Statistics
Matches: 215, Mismatches: 37, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
82 2 0.01
83 1 0.00
84 67 0.31
85 145 0.67
ACGTcount: A:0.18, C:0.31, G:0.14, T:0.36
Consensus pattern (85 bp):
AACCCTTTATCCTTTGTTTACTTATCGGCTCAGTCCCCGGTAAACCCCTTACCCTTTTGGTGACC
TGTCAGCTTAGTCCCCGATT
Found at i:812668 original size:85 final size:85
Alignment explanation
Indices: 812367--812684 Score: 347
Period size: 85 Copynumber: 3.8 Consensus size: 85
812357 TTATCACCTC
* * * * * *
812367 GGTGACCTATC-GACTTAGTCCCCAGTTAACCCTTTATCCTTTGTTTACTTATCGGCTCAATCCT
1 GGTGACCTGTCAG-CTTAGTCCCCGGTTAACCCTTCATCTTTTGTTTACTTATCGGCTCAGTCCC
* *
812431 CAGTAAA-CCTTTACCCTTTT
65 CGGTAAACCCCTTACCCTTTT
* * * * *
812451 GGTGACTTGTCAGCTTAGTCCCTGGTTAACCCTTTATCTTTTGTTTACTTATCGGCTGAGTCCCT
1 GGTGACCTGTCAGCTTAGTCCCCGGTTAACCCTTCATCTTTTGTTTACTTATCGGCTCAGTCCCC
*
812516 GGTAAACCCCTTACACTTTT
66 GGTAAACCCCTTACCCTTTT
* * * ** * *
812536 GGTGACCTATCGGCTTAGTCCCCGATTAACCCTTCATCCCTTATTTACCTATCGGCTCAGTCCCC
1 GGTGACCTGTCAGCTTAGTCCCCGGTTAACCCTTCATCTTTTGTTTACTTATCGGCTCAGTCCCC
812601 GGTAAACCCCTTACCCTTTT
66 GGTAAACCCCTTACCCTTTT
* * * * *
812621 GGTGACCTGTTAGCTTAG-CCTCCGGTTAA-CCTCCATCTTATTGTTTACTTGTTGGCTTAGTCC
1 GGTGACCTGTCAGCTTAGTCC-CCGGTTAACCCTTCATCTT-TTGTTTACTTATCGGCTCAGTCC
812684 C
64 C
812685 AAGTAAATTT
Statistics
Matches: 193, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
84 68 0.35
85 125 0.65
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (85 bp):
GGTGACCTGTCAGCTTAGTCCCCGGTTAACCCTTCATCTTTTGTTTACTTATCGGCTCAGTCCCC
GGTAAACCCCTTACCCTTTT
Found at i:814013 original size:167 final size:166
Alignment explanation
Indices: 813730--814155 Score: 416
Period size: 167 Copynumber: 2.5 Consensus size: 166
813720 ATTAAACATC
* * * * *
813730 AAAATTCTTCAAATATTATTATTTAATTCCCATCAAATCAGTTTTGAAAAATTTATTC-TACTTT
1 AAAATTCATCAAATATTATTATTTAATTCACATTAAATCAGTTTTAAAAAATTTATTCAT-CTTC
* * * * * * *
813794 TTGCGTTATTAATTTTCTT-TTGGAATTCCTCTAGTTTTCAAATTAGAGAGTTTTCTTCTCTGTA
65 ATGAGTTTTTAATTTT-TTCTTGAAATTCCTCTAGTTTTCAAATTACAGAGTTTTCTACTCCGTA
** * *
813858 AATTTTTTTCG-GGTGGA-TTTTCATGGGTT-TAAAATTTTT
129 AA-CGTTTTCGAGG-AGATTTTTC-TGAGTTAT-AAATTTTT
* * ** * *
813897 AAAATTCATCAAATATTATTATTTAATTAATATTAAATTGGTTTTCAAAAATTCATTCATCTTCA
1 AAAATTCATCAAATATTATTATTTAATTCACATTAAATCAGTTTTAAAAAATTTATTCATCTTCA
* *
813962 TGAGTTTTTCATTTTTTCCTTGAAATTCCT-TTGTTTTCAAAATT-CAGAGTTTTCTACTCCGTA
66 TGAGTTTTTAATTTTTT-CTTGAAATTCCTCTAGTTTTC-AAATTACAGAGTTTTCTACTCCGTA
* *
814025 AACGTTTTCGAGGAGATTTTTCTTAGTTATTAATTTTT
129 AACGTTTTCGAGGAGATTTTTCTGAGTTATAAATTTTT
* * * * *
814063 AAAATTCATCAAATATTATCACTTGATTCACATTAAATCAATTTTAAAAAATTTATTCATTTTCA
1 AAAATTCATCAAATATTATTATTTAATTCACATTAAATCAGTTTTAAAAAATTTATTCATCTTCA
* *
814128 CTGAATTTTGAATTTTTTCTTTGAAATT
66 -TGAGTTTTTAATTTTTTC-TTGAAATT
814156 GTCTTATTTT
Statistics
Matches: 211, Mismatches: 39, Indels: 18
0.79 0.15 0.07
Matches are distributed among these distances:
166 76 0.36
167 119 0.56
168 16 0.08
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (166 bp):
AAAATTCATCAAATATTATTATTTAATTCACATTAAATCAGTTTTAAAAAATTTATTCATCTTCA
TGAGTTTTTAATTTTTTCTTGAAATTCCTCTAGTTTTCAAATTACAGAGTTTTCTACTCCGTAAA
CGTTTTCGAGGAGATTTTTCTGAGTTATAAATTTTT
Found at i:814229 original size:166 final size:167
Alignment explanation
Indices: 813876--814237 Score: 376
Period size: 166 Copynumber: 2.2 Consensus size: 167
813866 TCGGGTGGAT
* * * * * ***
813876 TTTCATGGGTTTAAAATTTTTAAAATTCATCAAATATTATTATTTAATTAATATTAAATTGGTTT
1 TTTCTTGGGTTTAATATTTTTAAAATTCATCAAATATTATCACTTAATTAACATTAAATCAATTT
* * ** *
813941 TCAAAAATTCATTCATCTTCATGAGTTTTTCATTTTTTCCTTGAAATTCCTTTGTTTTCAAAATT
66 TAAAAAATTCATTCATCTTCATGAATTTTGAATTTTTTCCTTGAAATTCCTTTGTTTTCAAAAAT
* * * *
814006 CAGAGTTTTCTACTCCGTAAACGTTTTCGAGGAGATT
131 CAGAGTTTTCTACTCCATAAACATTTACGAGGAGATA
* * * *
814043 TTTCTT-AG-TTATTAATTTTTAAAATTCATCAAATATTATCACTTGATTCACATTAAATCAATT
1 TTTCTTGGGTTTAAT-ATTTTTAAAATTCATCAAATATTATCACTTAATTAACATTAAATCAATT
* * * * *
814106 TTAAAAAATTTATTCATTTTCACTGAATTTTGAATTTTTTCTTTGAAATTGTCTTAT-TTTTGAA
65 TTAAAAAATTCATTCATCTTCA-TGAATTTTGAATTTTTTCCTTGAAATT-CCTT-TGTTTTCAA
* ** *
814170 AAATC-GAGTTTTCTATTTTATAAATATTTACGAGG-G-TA
127 AAATCAGAGTTTTCTACTCCATAAACATTTACGAGGAGATA
814208 TTTCTTGGGTTTAATATTTTTAAAATTCAT
1 TTTCTTGGGTTTAATATTTTTAAAATTCAT
814238 TTAATATTGT
Statistics
Matches: 157, Mismatches: 32, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
165 10 0.06
166 78 0.50
167 55 0.35
168 13 0.08
169 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (167 bp):
TTTCTTGGGTTTAATATTTTTAAAATTCATCAAATATTATCACTTAATTAACATTAAATCAATTT
TAAAAAATTCATTCATCTTCATGAATTTTGAATTTTTTCCTTGAAATTCCTTTGTTTTCAAAAAT
CAGAGTTTTCTACTCCATAAACATTTACGAGGAGATA
Found at i:816779 original size:154 final size:154
Alignment explanation
Indices: 816375--817321 Score: 572
Period size: 154 Copynumber: 6.1 Consensus size: 154
816365 TCTATAAATC
* * ** * *
816375 CTTTTTAAGCCCTTTAGGGGTATC-GACTACGTT-TACGTTAAAAGTATCCCCTAGGGGCATTTT
1 CTTTTTAAGTCCTTTAGGGGTATCGGAC-AC-TTCTACATCGAAGGTATCCCCTAGGGGTATTTT
** ** ** * ** * *
816438 CG-TAATTTTTTAGAACT-AGCTCCTAGGTCATCACCGGGTCTGCTTCCACGCCGAAGGTGTGCA
64 -GATAATTTTTTAGAACTGAG-TCCTAGGTTGTCACTAGGTCTGCTTTAATGCCGAACATGGGTA
*
816501 TTTACGATAGGTTCAT--CCT-TTTAAT
127 TTTAGGATAGGTTCATCCCCTCTTTAAT
* * * * * * * * *
816526 CCTTTTAAGTCCCTTAGAGGTATCAGGATACTTTTACGTTGAAGGTATCCCCTAAGGGTATTTTC
1 CTTTTTAAGTCCTTTAGGGGTATC-GGACACTTCTACATCGAAGGTATCCCCTAGGGGTATTTTG
** * * *
816591 ATAATTTTTTTAGAACCAATTCCTACGTTATCACTAGGTCTGCTTTAATGCCGAACATGGGTATT
65 ATAA-TTTTTTAGAACTGAGTCCTAGGTTGTCACTAGGTCTGCTTTAATGCCGAACATGGGTATT
816656 TAGGATAGGTTCATCCCCTCTTTAAT
129 TAGGATAGGTTCATCCCCTCTTTAAT
* * * *
816682 CTTTTTAAGTCCATTAGGCG-ATCGGACACTTCTAAATCGAAGATATCCCCTAGGGGTATTTTGA
1 CTTTTTAAGTCCTTTAGGGGTATCGGACACTTCTACATCGAAGGTATCCCCTAGGGGTATTTTGA
* ** * *
816746 TAATTTTTTTAGAACTGAGTCCTAGGTTGTCACTAGGTCTGCTTTTATGTTGAAGATAGGTATTT
66 TAA-TTTTTTAGAACTGAGTCCTAGGTTGTCACTAGGTCTGCTTTAATGCCGAACATGGGTATTT
* * **
816811 AGGGTAGGTTCATCCCATCTGCAATT
130 AGGATAGGTTCATCCCCTCTTTAA-T
* * * *
816837 CTTTTT-AGTCCTTTAGGGGTATTAGG-TACTT-TCACATCGAAGGTATCTCCTAGAGGTATTTT
1 CTTTTTAAGTCCTTTAGGGGTA-TCGGACACTTCT-ACATCGAAGGTATCCCCTAGGGGTATTTT
* * * * * * * ** * *
816899 CATAATTTTATAAAATTGAGTCCTAGGTTGTTACT-GGATTTGCTTTTATGTTGAATATGAGTAT
64 GATAATTTTTTAGAACTGAGTCCTAGGTTGTCACTAGG-TCTGCTTTAATGCCGAACATGGGTAT
*
816963 TTAGGATAGGTTCAT-CCCTTTTATAAT
128 TTAGGATAGGTTCATCCCCTCTT-TAAT
* * * ** *
816990 CCTTTTTAAGTTCTTTAGGGGTATCAGACACTTCTACGTCGAACGGTATCCTGTTGGGGCTATTT
1 -CTTTTTAAGTCCTTTAGGGGTATCGGACACTTCTACATCGAA-GGTATCCCCTAGGGG-TATTT
* * * * *
817055 TCG-TAATTTTTTAGAA-TCGAGTCCTAAGTTGTCACCAAGTCCGC-TTATCTGCCGAAGC-TGG
63 T-GATAATTTTTTAGAACT-GAGTCCTAGGTTGTCACTAGGTCTGCTTTA-ATGCCGAA-CATGG
** * *
817116 CCATTTAGGATAGGTTCATCCCAT-TAATAAT
124 GTATTTAGGATAGGTTCATCCCCTCT-TTAAT
* ** * * * * * * *
817147 C-TTTTACTGTCCACTAGGGTTACCGAGATA-TTTTA-ATGTCGAAGGTATACCCATAAGGGCAT
1 CTTTTTA-AGTCCTTTAGGGGTATCG-GACACTTCTACA--TCGAAGGTAT-CCCCTAGGGGTAT
** * ** ** * * **
817209 TTT-AGTAATTTTCTTAGAACCAACTCCTAGGTTGTCACCGGGTCCACTTTTATGCCAAAGGTGG
61 TTTGA-TAATTTT-TTAGAACTGAGTCCTAGGTTGTCACTAGGTCTGCTTTAATGCCGAACATGG
* * *
817273 GCATTTAGAATAGGTTCA-CCCCATCTCTAAT
124 GTATTTAGGATAGGTTCATCCCC-TCTTTAAT
817304 CTTTTTTAAGTCCTTTAG
1 C-TTTTTAAGTCCTTTAG
817322 AGTTACCAGG
Statistics
Matches: 619, Mismatches: 134, Indels: 79
0.74 0.16 0.09
Matches are distributed among these distances:
151 22 0.04
152 31 0.05
153 67 0.11
154 193 0.31
155 77 0.12
156 75 0.12
157 135 0.22
158 14 0.02
159 5 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (154 bp):
CTTTTTAAGTCCTTTAGGGGTATCGGACACTTCTACATCGAAGGTATCCCCTAGGGGTATTTTGA
TAATTTTTTAGAACTGAGTCCTAGGTTGTCACTAGGTCTGCTTTAATGCCGAACATGGGTATTTA
GGATAGGTTCATCCCCTCTTTAAT
Found at i:821953 original size:19 final size:20
Alignment explanation
Indices: 821910--821960 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
821900 TACAAGCTAA
**
821910 TGTATCGATACATTTTTTGG
1 TGTATCGATACATACTTTGG
821930 TGTATCGATACATACTTT-G
1 TGTATCGATACATACTTTGG
821949 TGTATCGATACA
1 TGTATCGATACA
821961 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATACTTTGG
Found at i:824368 original size:21 final size:20
Alignment explanation
Indices: 824322--824368 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
824312 TTTGAAGGTG
*
824322 ATTTTGATGAAAAACGATGT
1 ATTTTGATGAAAAACGAAGT
*
824342 AATTTGAAGTGAAAAAC-AAGT
1 ATTTTG-A-TGAAAAACGAAGT
824363 ATTTTG
1 ATTTTG
824369 CAAAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:824508 original size:13 final size:13
Alignment explanation
Indices: 824490--824528 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
824480 ATAAACCCCC
*
824490 TGTATCGATACAG
1 TGTATCGATACAA
824503 TGTATCGATACAA
1 TGTATCGATACAA
824516 TGTATCGATACAA
1 TGTATCGATACAA
824529 AGAAAGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:824540 original size:20 final size:20
Alignment explanation
Indices: 824515--824593 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
824505 TATCGATACA
824515 ATGTATCGATACAAAGAAAG
1 ATGTATCGATACAAAGAAAG
**
824535 ATGTATCGATACATTGAATTTTCCAG
1 ATGTATCGATACAAAGAA------AG
* *
824561 ATGTATCGATACACAGAAAC
1 ATGTATCGATACAAAGAAAG
824581 ATGTATCGATACA
1 ATGTATCGATACA
824594 TTTTGAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 30 0.62
26 18 0.38
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (20 bp):
ATGTATCGATACAAAGAAAG
Found at i:828501 original size:19 final size:20
Alignment explanation
Indices: 828477--828514 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
828467 TTCCCGTGTA
828477 AATGTATCGATACA-ATTTT
1 AATGTATCGATACATATTTT
828496 AATGTATCGATACATATTT
1 AATGTATCGATACATATTT
828515 GAAAATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATATTTT
Done.