Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2011
Parameters: 2 7 7 80 10 50 1000
Length:  38781

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1330--1426
43
2.3
43
98
1
187
35
13
20
30
1.91
13777--13826
21
2.3
21
80
10
57
56
4
18
22
1.58
15626--15656
15
2.1
15
93
0
53
48
16
22
12
1.80
17727--17752
13
2.0
13
100
0
52
30
15
15
38
1.88
17873--17919
21
2.3
20
82
10
60
31
19
4
44
1.70
20286--20311
13
2.0
13
100
0
52
38
15
15
30
1.88
23891--23991
19
5.6
19
80
14
124
34
19
12
32
1.90
23929--23953
13
1.9
13
100
0
50
32
16
16
36
1.90
23886--23991
51
2.1
52
92
1
178
34
19
12
33
1.89
23910--23972
32
2.0
32
93
0
108
33
20
14
31
1.92
24548--24824
155
1.8
155
82
3
364
23
14
19
41
1.89
27902--27936
10
3.5
10
88
0
52
88
5
5
0
0.63
27901--27936
14
2.5
14
86
4
54
88
5
5
0
0.61
28262--28308
17
2.8
17
90
6
69
80
0
17
2
0.80
28284--28314
13
2.4
13
94
0
53
83
0
16
0
0.64
28261--28313
9
6.2
8
83
16
63
81
0
16
1
0.79
29206--29234
11
2.7
11
94
5
51
89
10
0
0
0.48
30594--30644
20
2.5
20
87
6
68
31
15
13
39
1.87
30675--30727
19
2.7
20
76
2
63
33
16
18
30
1.94
31431--31464
17
2.0
17
94
0
59
8
35
5
50
1.58
33653--33705
20
2.7
20
91
5
81
32
18
13
35
1.90
33734--33786
19
2.7
20
91
2
90
35
15
18
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34123--34285
81
2.0
82
89
1
247
29
31
12
26
1.92
35043--35115
20
3.6
20
81
3
101
35
13
19
31
1.91
35043--35137
41
2.3
42
96
1
174
40
12
17
29
1.87
35176--35201
13
2.0
13
100
0
52
38
15
15
30
1.88

Tables:   1

The End!