Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2012
Parameters: 2 7 7 80 10 50 1000
Length:  56367

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5056--5098
2
21.5
2
100
0
86
51
0
0
48
1.00
5635--5665
3
10.3
3
92
0
53
61
0
0
38
0.96
5889--5913
13
1.9
13
100
0
50
36
0
0
64
0.94
5850--6006
77
2.0
77
97
0
296
51
0
5
43
1.23
5966--5990
13
1.9
13
100
0
50
44
0
0
56
0.99
6159--6202
3
14.7
3
100
0
88
31
0
0
68
0.90
12843--12889
2
24.0
2
95
4
87
48
0
51
0
1.00
16018--16065
16
2.9
16
84
6
51
50
4
0
45
1.21
18052--18079
2
14.0
2
100
0
56
50
0
0
50
1.00
25777--25887
50
2.2
52
84
10
142
52
0
0
47
1.00
25815--25887
39
1.9
37
86
10
103
49
0
0
50
1.00
26923--27223
100
3.0
100
95
0
548
27
16
35
20
1.94
28146--28266
60
2.0
60
91
0
197
38
8
23
29
1.84
31681--31717
18
2.1
18
100
0
74
27
24
16
32
1.96
37174--37209
18
2.0
18
100
0
72
44
11
16
27
1.82
46183--46262
33
2.4
34
75
4
83
41
2
0
56
1.13
46210--46259
21
2.5
21
81
15
61
42
0
0
58
0.98
52330--52367
19
2.0
19
90
10
60
47
0
0
52
1.00
52609--52661
22
2.5
21
81
9
63
49
0
1
49
1.12
52639--52677
13
3.1
13
85
14
55
53
0
0
46
1.00
55190--55259
24
2.8
26
77
14
76
58
1
1
38
1.16

Tables:   1

The End!