genome.fa.s2014.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2014
Parameters: 2 7 7 80 10 50 1000
Length:  33282

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3219--3573	80	4.4	80	72	11	212	34	10	26	28	1.90
3327--3574	80	3.1	80	76	9	254	34	11	27	26	1.91
5595--5648	20	2.7	20	85	2	72	35	16	9	38	1.81
7854--8377	72	7.3	71	81	3	530	34	14	23	27	1.94
7836--8390	216	2.6	212	82	6	636	36	14	23	26	1.93
7854--8487	216	2.9	213	80	8	527	36	14	22	26	1.93
9456--9490	16	2.1	17	89	5	54	0	5	5	88	0.63
9455--9493	19	2.0	20	90	5	62	0	5	7	87	0.68
9681--9719	21	1.9	20	89	5	60	38	15	10	35	1.81
12012--12063	27	2.0	26	85	10	72	23	44	17	15	1.86
23763--23813	22	2.3	22	90	6	77	84	13	1	0	0.71
23763--23814	23	2.4	21	79	17	61	82	13	3	0	0.80
25256--25931	29	23.5	28	82	8	611	29	33	17	20	1.95
25250--25931	58	11.8	57	81	7	684	29	33	16	20	1.95
25257--25931	86	7.8	84	82	6	633	29	33	17	20	1.95
25284--25931	258	2.5	259	88	2	962	29	33	17	20	1.95
25954--26145	43	4.3	43	82	7	249	23	24	21	30	1.99
29224--29367	52	2.8	52	85	11	206	31	17	18	33	1.94
29356--29380	13	1.9	13	100	0	50	36	16	16	32	1.90
29424--29448	13	1.9	13	100	0	50	32	16	16	36	1.90
29402--29468	33	2.0	33	88	0	98	40	13	11	34	1.81
29800--30151	49	7.6	49	70	14	246	27	25	17	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29840--29999	39	3.9	39	70	13	113	28	25	19	26	1.99
29800--30042	87	2.8	88	85	3	312	27	25	18	28	1.98
29967--30252	98	2.9	98	81	4	283	25	25	16	32	1.96
31775--31820	19	2.2	20	79	20	51	26	17	15	41	1.88
32784--32817	1	34.0	1	93	0	59	97	0	2	0	0.19

Tables:   1

The End!