genome.fa.s2015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2015
Parameters: 2 7 7 80 10 50 1000
Length:  75709

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689--946	62	4.4	60	82	8	268	25	27	21	26	1.99
861--1046	100	1.9	99	87	3	275	26	31	17	24	1.97
968--1238	59	4.5	60	85	3	348	25	28	19	27	1.98
688--1491	282	3.0	273	82	9	911	24	28	20	26	1.99
1250--1610	55	6.5	55	88	6	480	26	27	22	24	2.00
1059--1438	203	1.8	207	85	8	531	25	28	20	25	1.99
1373--1454	27	3.0	27	63	16	69	26	29	23	20	1.99
1580--1903	42	7.5	42	77	14	302	19	27	13	39	1.89
1582--1903	89	3.7	86	75	14	281	19	27	13	39	1.90
1579--1942	131	2.8	131	89	2	554	19	27	12	39	1.88
2638--2681	21	2.0	22	86	4	63	31	13	13	40	1.84
2709--2752	21	2.0	21	86	4	61	36	13	11	38	1.81
2740--2772	17	2.0	16	94	5	57	36	12	18	33	1.88
5165--5296	51	2.6	52	87	3	178	32	25	9	32	1.88
5188--5296	52	2.1	51	88	5	157	33	26	7	32	1.84
5231--5378	78	1.9	79	88	4	228	31	28	12	28	1.93
5310--5481	51	3.4	51	82	3	211	28	27	12	31	1.93
5363--5690	131	2.5	130	81	6	358	27	26	13	32	1.94
5492--5611	51	2.3	51	92	1	195	29	25	13	31	1.94
5200--5608	182	2.2	180	83	6	488	30	25	11	33	1.91
5544--5718	79	2.2	79	84	2	226	26	27	15	30	1.96
9232--9258	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11150--11204	25	2.2	25	90	0	83	25	5	27	41	1.77
11158--11207	25	2.0	25	96	0	91	26	4	28	42	1.73
11837--11890	20	2.7	20	91	5	83	31	12	18	37	1.89
15643--16157	128	4.0	128	77	6	370	20	23	16	39	1.92
15950--16029	41	2.0	41	82	5	99	17	22	16	43	1.87
15607--17403	43	42.8	42	71	8	454	20	23	15	40	1.91
15583--17414	85	21.8	84	71	8	429	20	23	15	40	1.91
16178--16334	79	2.0	79	83	3	201	15	21	16	46	1.84
17420--17552	38	3.4	38	71	10	106	18	22	12	45	1.83
17415--17612	79	2.5	79	76	4	195	17	23	13	45	1.83
17607--17794	43	4.4	43	77	3	146	20	22	17	39	1.92
17740--18438	42	16.3	42	73	9	372	21	25	15	37	1.92
17901--18438	43	12.7	43	74	5	364	21	25	14	37	1.92
17912--18633	85	8.6	85	73	9	379	21	25	15	38	1.92
18008--18448	123	3.5	121	81	6	416	20	26	15	37	1.93
18483--18607	43	2.9	43	70	4	117	20	24	16	40	1.91
19719--20102	154	2.5	152	79	8	402	34	10	7	47	1.66
21388--21428	21	2.0	21	85	0	55	24	14	12	48	1.78
22503--22529	13	2.1	13	100	0	54	29	14	14	40	1.86
22484--22548	32	2.0	32	90	3	103	26	16	16	40	1.90
22514--22569	19	2.8	19	86	5	67	30	16	16	37	1.90
30578--30616	18	2.1	19	95	4	71	53	0	33	12	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30621--30678	18	3.3	18	71	20	59	34	1	29	34	1.68
31218--31244	13	2.1	13	100	0	54	29	14	14	40	1.86
31199--31263	32	2.0	32	90	3	103	26	16	16	40	1.90
31229--31285	19	2.9	19	89	5	78	29	17	17	35	1.93
39069--39115	23	2.0	25	87	8	71	42	4	0	53	1.20
39068--39121	24	2.2	25	80	9	67	44	3	0	51	1.19
45666--45712	3	15.7	3	95	0	85	2	31	0	65	1.04
47791--47822	3	10.7	3	100	0	64	31	0	0	68	0.90
48710--48742	17	1.9	17	100	0	66	42	0	0	57	0.98
48712--48759	17	2.7	17	87	6	60	45	2	0	52	1.12
49387--49432	20	2.4	19	92	7	83	58	0	0	41	0.98
50171--50208	20	1.9	20	84	10	51	36	2	5	55	1.37
52377--52406	14	2.1	14	93	0	51	53	20	0	26	1.46
52894--52942	25	2.0	25	83	0	62	24	2	22	51	1.59
55735--55798	13	4.9	13	68	12	51	39	0	15	45	1.47
57655--57689	14	2.4	15	85	4	54	57	0	5	37	1.23
57721--57759	16	2.3	18	86	8	55	48	2	15	33	1.58
60542--60587	25	1.9	23	86	8	65	78	4	0	17	0.91
70061--70098	20	1.9	20	94	0	67	47	5	7	39	1.55
71543--71585	20	2.2	19	83	4	50	60	0	4	34	1.17
71572--71627	27	2.1	26	83	9	69	55	0	0	44	0.99
72574--72611	20	1.9	20	89	10	60	55	0	2	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74370--74420	13	3.5	13	76	23	57	31	13	17	37	1.89
74349--74420	31	2.3	32	95	2	128	33	12	18	36	1.88
74464--74489	13	2.0	13	100	0	52	30	15	15	38	1.88
74444--74509	33	2.0	33	91	5	107	25	16	13	43	1.85

Tables:   1

The End!