Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2018

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5268
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36


Found at i:165 original size:20 final size:21

Alignment explanation


    Indices: 134--173  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        124 ATCTAGGTTT

                                 
        134 TTTCAGATGTATCGATACATC
          1 TTTCAGATGTATCGATACATC

                                
        155 TTTCA-ATGTATCGATACAT
          1 TTTCAGATGTATCGATACAT

        174 TTTGAAAATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   14  0.74
  21    5  0.26

ACGTcount: A:0.30, C:0.17, G:0.12, T:0.40


Consensus pattern (21 bp):   
TTTCAGATGTATCGATACATC

Found at i:3991 original size:15 final size:15

Alignment explanation


    Indices: 3973--4010  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       3963 CAAGTCAACT

                           
       3973 TCATCATTATCATCA
          1 TCATCATTATCATCA

                       * * 
       3988 TCATCATTATCTTTA
          1 TCATCATTATCATCA

                    
       4003 TCATCATT
          1 TCATCATT

       4011 GATGGTTGAC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47


Consensus pattern (15 bp):   
TCATCATTATCATCA
Done.