Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2706578
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 12 of 16
Found at i:1948492 original size:62 final size:61
Alignment explanation
Indices: 1948405--1948530 Score: 180
Period size: 61 Copynumber: 2.0 Consensus size: 61
1948395 ACCAATTAAT
* * * * *
1948405 AAAATAGTATTTGAAAAAATCAATGTTATAAAAAAAACTTTCGAAACTGTTAATAGTCTAAC
1 AAAATAGTATTCGAAAAAATAAATGTTAT-AAAAAAACTTTCAAAACTGTCAATAATCTAAC
* *
1948467 AAAATAGTATTCGAAGAAATAAATGTTATAAAAAAACTTTCAAAACTGTCAATAATCTATC
1 AAAATAGTATTCGAAAAAATAAATGTTATAAAAAAACTTTCAAAACTGTCAATAATCTAAC
1948528 AAA
1 AAA
1948531 TAATAATTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 31 0.54
62 26 0.46
ACGTcount: A:0.52, C:0.10, G:0.09, T:0.29
Consensus pattern (61 bp):
AAAATAGTATTCGAAAAAATAAATGTTATAAAAAAACTTTCAAAACTGTCAATAATCTAAC
Found at i:1950171 original size:49 final size:48
Alignment explanation
Indices: 1950076--1950236 Score: 150
Period size: 49 Copynumber: 3.3 Consensus size: 48
1950066 TTTTAGCATG
* * *
1950076 ACTTTAGAGA-CTCGGTTTAGGTT-GTTTATGATGGAAAGTACAAAAACTA
1 ACTTTAGAAAGCTCGATTTTGGTTGGTTT-TGAT-GAAAGTAC-AAAACTA
*
1950125 ACTTTAGAAAGCTCGATTTTGGTTGGTTTTGATCGAATGTACAAAACTA
1 ACTTTAGAAAGCTCGATTTTGGTTGGTTTTGAT-GAAAGTACAAAACTA
* * *
1950174 A-TCTTA-AAAGATTCGTTTTTGGTTGGTTTTGATGAAAAGTATAAAACTA
1 ACT-TTAGAAAG-CTCGATTTTGGTTGGTTTTGATG-AAAGTACAAAACTA
* *
1950223 ACCTTAAAAAGCTC
1 ACTTTAGAAAGCTC
1950237 TAAAATGCAT
Statistics
Matches: 94, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
48 6 0.06
49 58 0.62
50 26 0.28
51 4 0.04
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.35
Consensus pattern (48 bp):
ACTTTAGAAAGCTCGATTTTGGTTGGTTTTGATGAAAGTACAAAACTA
Found at i:1950510 original size:58 final size:58
Alignment explanation
Indices: 1950237--1950615 Score: 313
Period size: 58 Copynumber: 6.6 Consensus size: 58
1950227 TAAAAAGCTC
* * * * * *
1950237 TAAAATGCATGAAATTACTAAATAGTCCTGAAATCATTAAAAATAACTTAAATGACTCT
1 TAAAATGCATGAAATTGCAAAATAGTCCTTAAATAATGAAAAATGACTTAAATGAC-CT
* * * * * * *
1950296 AAAAATACATGAAATTACAAAATGGATCC-TAAATCAT-AGAAAATGACCT-AATGATCT
1 TAAAATGCATGAAATTGCAAAATAG-TCCTTAAATAATGA-AAAATGACTTAAATGACCT
* * * * * *
1950353 TAGAATGCATGAAAGTGCAAAATAGTCCCTAAATCATG-AAAATAACTTAAATGACCC
1 TAAAATGCATGAAATTGCAAAATAGTCCTTAAATAATGAAAAATGACTTAAATGACCT
* * * * * * *
1950410 TAAAATGTATGAAATTACATAA-CGAT-CTCTAAATAATTAAAAATTATTTAAATGACCT
1 TAAAATGCATGAAATTGCAAAATAG-TCCT-TAAATAATGAAAAATGACTTAAATGACCT
* *
1950468 TAAAATGCATGAAATCGCAAAATAGTCCTTAAAAAATGAAAAATGACTTAAATGA-CT
1 TAAAATGCATGAAATTGCAAAATAGTCCTTAAATAATGAAAAATGACTTAAATGACCT
* * * * *
1950525 CTAAAATGCATGAAATTGCATAATAATCCTTAAATCATGAAAAATGACCTAAATGATCT
1 -TAAAATGCATGAAATTGCAAAATAGTCCTTAAATAATGAAAAATGACTTAAATGACCT
** * * *
1950584 TAAAATATATAAAATTGCATAATAATCCTTAA
1 TAAAATGCATGAAATTGCAAAATAGTCCTTAA
1950616 TATGCATGAA
Statistics
Matches: 260, Mismatches: 48, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
56 13 0.05
57 62 0.24
58 141 0.54
59 41 0.16
60 3 0.01
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (58 bp):
TAAAATGCATGAAATTGCAAAATAGTCCTTAAATAATGAAAAATGACTTAAATGACCT
Found at i:1950535 original size:173 final size:175
Alignment explanation
Indices: 1950236--1950605 Score: 405
Period size: 173 Copynumber: 2.1 Consensus size: 175
1950226 TTAAAAAGCT
* * *
1950236 CTAAAATGCATGAAATTAC-TAAATAGTCCTGAAATCATTAAAAATAACTTAAATGACTCTAAAA
1 CTAAAATGTATGAAATTACATAAAGAGTCCTGAAATAATTAAAAATAACTTAAATGACTCTAAAA
* * ** *
1950300 ATACATGAAATTACAAAATGGATCCTAAATCATAGAAAATGACCTAATGATCTTAGAATGCATGA
66 ATACATGAAATCACAAAATAGATCCTAAAAAATAGAAAATGACCTAATGATCTTAAAATGCATGA
* *
1950365 AAGTGCAAAATAGTCCCTAAATCATG-AAAATAACTTAAATGACC
131 AAGTGCAAAATAATCCCTAAATCATGAAAAATAACCTAAATGACC
* * * *
1950409 CTAAAATGTATGAAATTACATAACGA-TCTCT-AAATAATTAAAAATTATTTAAATGAC-CTTAA
1 CTAAAATGTATGAAATTACATAAAGAGTC-CTGAAATAATTAAAAATAACTTAAATGACTCTAAA
* * *
1950471 AATGCATGAAATCGCAAAATAG-TCCTTAAAAAAT-GAAAAATGACTTAAATGA-CTCTAAAATG
65 AATACATGAAATCACAAAATAGATCC-TAAAAAATAG-AAAATGACCT-AATGATCT-TAAAATG
* * * * *
1950533 CATGAAATTGCATAATAATCCTTAAATCATGAAAAATGACCTAAATGATC
126 CATGAAAGTGCAAAATAATCCCTAAATCATGAAAAATAACCTAAATGACC
* * * *
1950583 TTAAAATATATAAAATTGCATAA
1 CTAAAATGTATGAAATTACATAA
1950606 TAATCCTTAA
Statistics
Matches: 164, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
171 4 0.02
172 39 0.24
173 81 0.49
174 40 0.24
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.28
Consensus pattern (175 bp):
CTAAAATGTATGAAATTACATAAAGAGTCCTGAAATAATTAAAAATAACTTAAATGACTCTAAAA
ATACATGAAATCACAAAATAGATCCTAAAAAATAGAAAATGACCTAATGATCTTAAAATGCATGA
AAGTGCAAAATAATCCCTAAATCATGAAAAATAACCTAAATGACC
Found at i:1950558 original size:29 final size:29
Alignment explanation
Indices: 1950526--1950626 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
1950516 TAAATGACTC
1950526 TAAAATGCATGAAATTGCATAATAATCCT
1 TAAAATGCATGAAATTGCATAATAATCCT
* * *
1950555 T-AAAT-CATGAAAAATGACCTAAATGAT-CT
1 TAAAATGCATG-AAATTG-CAT-AATAATCCT
** *
1950584 TAAAATATATAAAATTGCATAATAATCCT
1 TAAAATGCATGAAATTGCATAATAATCCT
*
1950613 TAATATGCATGAAA
1 TAAAATGCATGAAA
1950627 ACATTGTGGA
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
27 4 0.07
28 14 0.26
29 20 0.37
30 14 0.26
31 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.31
Consensus pattern (29 bp):
TAAAATGCATGAAATTGCATAATAATCCT
Found at i:1950559 original size:116 final size:115
Alignment explanation
Indices: 1950237--1950627 Score: 414
Period size: 116 Copynumber: 3.4 Consensus size: 115
1950227 TAAAAAGCTC
* * * *
1950237 TAAAATGCATGAAATTACTAAATAGTCCTGAAATCATTAAAAATAACTTAAATGACTCTAAAAAT
1 TAAAATGCATGAAA-TGCAAAATAGTCCTTAAATCATGAAAAATAACTTAAATGACTCT-AAAAT
* *
1950302 ACATGAAATTACAAAATGGATCC-TAAATCA-TAGAAAATGACCT-AATGATCT
64 GCATGAAATTACATAAT-GATCCTTAAATCATTA-AAAATGACCTAAATGATCT
* * *
1950353 TAGAATGCATGAAAGTGCAAAATAGTCCCTAAATCATG-AAAATAACTTAAATGACCCTAAAATG
1 TAAAATGCATGAAA-TGCAAAATAGTCCTTAAATCATGAAAAATAACTTAAATGACTCTAAAATG
* * * * ** *
1950417 TATGAAATTACATAACGAT-CTCTAAATAATTAAAAATTATTTAAATGACCT
65 CATGAAATTACATAATGATCCT-TAAATCATTAAAAATGACCTAAATGATCT
** *
1950468 TAAAATGCATGAAATCGCAAAATAGTCCTTAAAAAATGAAAAATGACTTAAATGACTCTAAAATG
1 TAAAATGCATGAAAT-GCAAAATAGTCCTTAAATCATGAAAAATAACTTAAATGACTCTAAAATG
* * *
1950533 CATGAAATTGCATAATAATCCTTAAATCATGAAAAATGACCTAAATGATCT
65 CATGAAATTACATAATGATCCTTAAATCATTAAAAATGACCTAAATGATCT
** * * *
1950584 TAAAATATATAAAATTGCATAATAATCCTTAATATGCATGAAAA
1 TAAAATGCATGAAA-TGCAAAATAGTCCTTAA-AT-CATGAAAA
1950628 CATTGTGGAA
Statistics
Matches: 225, Mismatches: 40, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
112 1 0.00
113 3 0.01
114 32 0.14
115 60 0.27
116 118 0.52
117 4 0.02
118 7 0.03
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (115 bp):
TAAAATGCATGAAATGCAAAATAGTCCTTAAATCATGAAAAATAACTTAAATGACTCTAAAATGC
ATGAAATTACATAATGATCCTTAAATCATTAAAAATGACCTAAATGATCT
Found at i:1958026 original size:17 final size:18
Alignment explanation
Indices: 1957991--1958035 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
1957981 TCAGCAAATT
1957991 TTTTTAAATATAATGAAA
1 TTTTTAAATATAATGAAA
* *
1958009 TTTTTAAGTA-AATTAAA
1 TTTTTAAATATAATGAAA
*
1958026 TTATTAAATA
1 TTTTTAAATA
1958036 CTAAAATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (18 bp):
TTTTTAAATATAATGAAA
Found at i:1960209 original size:27 final size:27
Alignment explanation
Indices: 1960154--1960209 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
1960144 TTAAAATTTT
*
1960154 TTATATTTAAATAATTATATTTTATTA
1 TTATATTTAAATAATTATATTATATTA
1960181 TTATATTTAAAT-A-TATATTAATATGTA
1 TTATATTTAAATAATTATATT-ATAT-TA
1960208 TT
1 TT
1960210 GAATATGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 6 0.23
26 4 0.15
27 16 0.62
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (27 bp):
TTATATTTAAATAATTATATTATATTA
Found at i:1960495 original size:5 final size:5
Alignment explanation
Indices: 1960485--1960556 Score: 60
Period size: 5 Copynumber: 14.2 Consensus size: 5
1960475 CGGCACCATT
* *
1960485 ATATA ATATAA ATATA ATATA A-A-A AAATA ATTATA ATATA TTATA ATATAA
1 ATATA ATAT-A ATATA ATATA ATATA ATATA A-TATA ATATA ATATA ATAT-A
*
1960536 AAATA ATATAA ATATA A-ATA A
1 ATATA ATAT-A ATATA ATATA A
1960557 ATATGTTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
3 2 0.04
4 6 0.11
5 30 0.54
6 18 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (5 bp):
ATATA
Found at i:1960501 original size:11 final size:11
Alignment explanation
Indices: 1960485--1960560 Score: 90
Period size: 11 Copynumber: 7.4 Consensus size: 11
1960475 CGGCACCATT
1960485 ATATAATATAA
1 ATATAATATAA
1960496 ATATAATATAA
1 ATATAATATAA
1960507 A-A-AA-ATAA
1 ATATAATATAA
*
1960515 TTATAATAT-A
1 ATATAATATAA
*
1960525 TTATAATATAA
1 ATATAATATAA
*
1960536 AAATAATATAA
1 ATATAATATAA
1960547 ATATAA-ATAA
1 ATATAATATAA
1960557 ATAT
1 ATAT
1960561 GTTAAAAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
8 4 0.07
9 3 0.05
10 21 0.37
11 29 0.51
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATAATATAA
Found at i:1960535 original size:21 final size:20
Alignment explanation
Indices: 1960484--1960560 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 20
1960474 ACGGCACCAT
1960484 TATATAATATAAATATAATA
1 TATATAATATAAATATAATA
* * *
1960504 TA-AAAAAATAATTATAATA
1 TATATAATATAAATATAATA
*
1960523 TATTATAATATAAAAATAATA
1 TA-TATAATATAAATATAATA
1960544 TAAATATAA-ATAAATAT
1 T--ATATAATATAAATAT
1960561 GTTAAAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
19 16 0.36
20 2 0.04
21 21 0.47
22 5 0.11
23 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATAATATAAATATAATA
Found at i:1960559 original size:27 final size:28
Alignment explanation
Indices: 1960484--1960560 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
1960474 ACGGCACCAT
1960484 TATATAATATAAATATAATATAAAAAAA
1 TATATAATATAAATATAATATAAAAAAA
*
1960512 TAATTATAATAT-ATTATAATATAAAAATAA
1 T-A-TATAATATAAATATAATATAAAAA-AA
1960542 TATA-AATATAAATA-AATAT
1 TATATAATATAAATATAATAT
1960561 GTTAAAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
27 10 0.23
28 6 0.14
29 16 0.37
30 11 0.26
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (28 bp):
TATATAATATAAATATAATATAAAAAAA
Found at i:1960579 original size:56 final size:61
Alignment explanation
Indices: 1960484--1960620 Score: 133
Period size: 57 Copynumber: 2.3 Consensus size: 61
1960474 ACGGCACCAT
*
1960484 TATATAATATAAATATAATATAAAAAAATAATTATAATAT-ATTA-TAA-TAT-AAAAATAA
1 TATA-AATATAAATATAATATAAAAAAATAATTACAATATAATTATTAACTATCAAAAATAA
** * * *
1960542 TATAAATATAAATA-AATATGTTAAAAATTATT-CAATATGAATTATTAACGTATCAAAATTTA
1 TATAAATATAAATATAATAT-AAAAAAATAATTACAATAT-AATTATTAAC-TATCAAAAATAA
1960604 TATAAATATAAAATATA
1 TATAAATAT-AAATATA
1960621 TTTTAAATAC
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
56 10 0.16
57 19 0.30
58 8 0.12
59 3 0.05
61 3 0.05
62 15 0.23
63 5 0.08
64 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (61 bp):
TATAAATATAAATATAATATAAAAAAATAATTACAATATAATTATTAACTATCAAAAATAA
Found at i:1961346 original size:22 final size:22
Alignment explanation
Indices: 1961319--1961361 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
1961309 ATATTAAAAA
1961319 TTATTTTTAT-ATTAATATTTAT
1 TTATTTTTATAATTAA-ATTTAT
1961341 TTATTTTTATAATTAAATTTA
1 TTATTTTTATAATTAAATTTA
1961362 AGTAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TTATTTTTATAATTAAATTTAT
Found at i:1961390 original size:16 final size:17
Alignment explanation
Indices: 1961357--1961390 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1961347 TTATAATTAA
1961357 ATTTAAGTAAAAATATT
1 ATTTAAGTAAAAATATT
*
1961374 ATTTAATTAAAAA-ATT
1 ATTTAAGTAAAAATATT
1961390 A
1 A
1961391 CTATACCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
ATTTAAGTAAAAATATT
Found at i:1963585 original size:58 final size:58
Alignment explanation
Indices: 1963465--1963613 Score: 142
Period size: 58 Copynumber: 2.6 Consensus size: 58
1963455 TGGTCCACAA
* * * * * ** *
1963465 ATTATA-AAAATAACCTAAATGCCCCTAAAGTTTATAAAAATTGTAACATTGTTCCTCG
1 ATTATAGAAAATAACCTAAATGACCCTAAA-ATGATAAAAATTATAAAATAATCCCTCG
1963523 ATTATAGAAAATAACCTAAATGACCCTAAAATGATAAAAATTATAAAATAATCCCTAC-
1 ATTATAGAAAATAACCTAAATGACCCTAAAATGATAAAAATTATAAAATAATCCCT-CG
* * * *
1963581 ATTAT-GAAAAATAACTTATATGGCCATAAAATG
1 ATTATAG-AAAATAACCTAAATGACCCTAAAATG
1963614 CATGGAAATT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
57 1 0.01
58 52 0.68
59 23 0.30
ACGTcount: A:0.48, C:0.15, G:0.08, T:0.30
Consensus pattern (58 bp):
ATTATAGAAAATAACCTAAATGACCCTAAAATGATAAAAATTATAAAATAATCCCTCG
Found at i:1966873 original size:29 final size:30
Alignment explanation
Indices: 1966836--1966907 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
1966826 AACGAGGTAG
* *
1966836 TAATTCGAA-ATTGTAAATAAAAATTTATA
1 TAATACGAATATTATAAATAAAAATTTATA
* *
1966865 TAATACGAATTATTATATATCAAAATTTATA
1 TAATACGAA-TATTATAAATAAAAATTTATA
*
1966896 TAATATGAATAT
1 TAATACGAATAT
1966908 AAAAAAGGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 8 0.22
30 3 0.08
31 25 0.69
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (30 bp):
TAATACGAATATTATAAATAAAAATTTATA
Found at i:1971066 original size:20 final size:20
Alignment explanation
Indices: 1971008--1971066 Score: 50
Period size: 20 Copynumber: 2.9 Consensus size: 20
1970998 ATTTTTTAAT
*
1971008 ATAATAACTATTATTTAA-AAA
1 ATAATAA-TAATA-TTAATAAA
*
1971029 ATAATAATAATATAAATAAA
1 ATAATAATAATATTAATAAA
*
1971049 ATAAATAAT-GTATTAATA
1 AT-AATAATAATATTAATA
1971067 CACTTTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 3 0.09
20 16 0.50
21 13 0.41
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
ATAATAATAATATTAATAAA
Found at i:1971682 original size:2 final size:2
Alignment explanation
Indices: 1971675--1971700 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1971665 TCTTATAGAA
1971675 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1971701 GTCGTTGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1973130 original size:74 final size:74
Alignment explanation
Indices: 1972988--1973130 Score: 182
Period size: 74 Copynumber: 1.9 Consensus size: 74
1972978 TTGAATAAAT
** * * **
1972988 GAGATCTGTTTCAAAGGCTTCTGAGACTTGATCTTGACAAACAAAATTAATCTACTTTTTGTTGT
1 GAGATCTACTTCAAAGGCTTCTGAGACTTAATCTTAACAAACAAAATTAATCTACTTTTTGTCAT
1973053 TAAATTAAC
66 TAAATTAAC
**
1973062 GAGATCTACTTCAAAGG-TTCATGAGACTTAATCTTAACAAACTTAATTAATCT-CTTTTCTGTC
1 GAGATCTACTTCAAAGGCTTC-TGAGACTTAATCTTAACAAACAAAATTAATCTACTTTT-TGTC
1973125 ATTAAA
64 ATTAAA
1973131 ATAGGATCGG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
73 8 0.14
74 51 0.86
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (74 bp):
GAGATCTACTTCAAAGGCTTCTGAGACTTAATCTTAACAAACAAAATTAATCTACTTTTTGTCAT
TAAATTAAC
Found at i:1974724 original size:14 final size:14
Alignment explanation
Indices: 1974707--1974735 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1974697 CGTATCCAAT
1974707 TAGTTTTATCATGA
1 TAGTTTTATCATGA
1974721 TAGTTTTATCATGA
1 TAGTTTTATCATGA
1974735 T
1 T
1974736 TTTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52
Consensus pattern (14 bp):
TAGTTTTATCATGA
Found at i:1974913 original size:112 final size:110
Alignment explanation
Indices: 1974740--1975022 Score: 336
Period size: 115 Copynumber: 2.5 Consensus size: 110
1974730 CATGATTTTA
* * * * ** *
1974740 AATTTTAAATTTTAAAATAATAAATTGATAAGTTTAAAATTTTATCTTTCGTTAACGGTTGTAAT
1 AATTTTAAATTTAAAAATAATAAACTGATAAATTTATAATTTTATCTTTTATTAACCGTTGTAAT
* * *
1974805 TTAAGTGAAAG-ATAAAAAATTATCATTATTTTTAGGATAATTGT
66 CTAAGTGAAAGAATAAAAAATTATCATGATTTTTAAGATAATTGT
*
1974849 AATTTTAAACTTTAAAAAATAATAAAACTAATAAATTTATAATTTTATCTTTTATTAACCGTTGT
1 AATTTTAAA-TTT-AAAAATAAT-AAACTGATAAATTTATAATTTTATCTTTTATTAACCGTTGT
*
1974914 AATCTAGGTGAAAGCTAATAAAAAATTATCATGATTTTTAAGATAATTGT
63 AATCTAAGTGAAAG--AATAAAAAATTATCATGATTTTTAAGATAATTGT
* * *
1974964 TATTTTAAAAAATTTGAAAATAATAAACTTGATATATTTATAATTTTAT-TTTTATTAAC
1 AATTTT---AAATTTAAAAATAATAAAC-TGATAAATTTATAATTTTATCTTTTATTAAC
1975023 TATTGTAAAT
Statistics
Matches: 148, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
109 9 0.06
110 3 0.02
111 8 0.05
112 46 0.31
115 50 0.34
116 26 0.18
117 3 0.02
118 3 0.02
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.44
Consensus pattern (110 bp):
AATTTTAAATTTAAAAATAATAAACTGATAAATTTATAATTTTATCTTTTATTAACCGTTGTAAT
CTAAGTGAAAGAATAAAAAATTATCATGATTTTTAAGATAATTGT
Found at i:1975083 original size:116 final size:115
Alignment explanation
Indices: 1974746--1975084 Score: 277
Period size: 115 Copynumber: 3.0 Consensus size: 115
1974736 TTTAAATTTT
* * * * * ** ** * *
1974746 AAATTTTAAAATAAT-AAATTGATAAGTTTAAAATTTTATCTTTCGTTAACGGTTGTAATTTAAG
1 AAATTTGAAAATAATAAAACTAATAAATTTATAATTTTATCTTTTATTAACCATTGTAATCTAGG
* * * * *
1974810 TGAAAG---ATAAAAAATTATCATTATTTTTAGGATAATTGTAATTTT--A
66 TGAAAGATAATAAAAAAATATCATGA-TTTTAAGATAATTATTATTTTAAA
* * *
1974856 AACTTTAAAAAATAATAAAACTAATAAATTTATAATTTTATCTTTTATTAACCGTTGTAATCTAG
1 AAATTT-GAAAATAATAAAACTAATAAATTTATAATTTTATCTTTTATTAACCATTGTAATCTAG
* * *
1974921 GTGAAAGCTAATAAAAAATTATCATGATTTTTAAGATAATTGTTATTTTAAA
65 GTGAAAGATAATAAAAAAATATCATGA-TTTTAAGATAATTATTATTTTAAA
* * *
1974973 AAATTTGAAAATAAT-AAACTTGATATATTTATAATTTTAT-TTTTATTAACTATTGTAAATTAA
1 AAATTTGAAAATAATAAAAC-TAATAAATTTATAATTTTATCTTTTATTAACCATTG-----TAA
* *
1975036 TCTAGGTTAAAGATAATAAAAAAATATTATGA-TTT-A-ATAATTATTATTT
60 TCTAGGTGAAAGATAATAAAAAAATATCATGATTTTAAGATAATTATTATTT
1975085 AATTAAATAG
Statistics
Matches: 191, Mismatches: 25, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
110 5 0.03
111 8 0.04
112 46 0.24
115 53 0.28
116 38 0.20
117 7 0.04
118 3 0.02
120 31 0.16
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.43
Consensus pattern (115 bp):
AAATTTGAAAATAATAAAACTAATAAATTTATAATTTTATCTTTTATTAACCATTGTAATCTAGG
TGAAAGATAATAAAAAAATATCATGATTTTAAGATAATTATTATTTTAAA
Found at i:1975820 original size:52 final size:52
Alignment explanation
Indices: 1975730--1975869 Score: 176
Period size: 52 Copynumber: 2.7 Consensus size: 52
1975720 CTTGAAAAGA
* * * *
1975730 AAATATAACGATACATTTTTTATTCTATCAATACATTCT-GAGTTTTTGA-TCT
1 AAATATATCGATACATTTTTCATTGTATCGATACATTCTGGA-TTTTTGACT-T
* *
1975782 AAATATATCGATACATTTTTCATTGTATTGATATATTCTGGATTTTTGACTT
1 AAATATATCGATACATTTTTCATTGTATCGATACATTCTGGATTTTTGACTT
* *
1975834 AAATATATCGATACATTCTTCAATGTATCGATACAT
1 AAATATATCGATACATTTTTCATTGTATCGATACAT
1975870 CCAGTTAAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
52 73 0.96
53 3 0.04
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (52 bp):
AAATATATCGATACATTTTTCATTGTATCGATACATTCTGGATTTTTGACTT
Found at i:1977351 original size:21 final size:22
Alignment explanation
Indices: 1977321--1977369 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
1977311 AATTATTTTA
*
1977321 AAATATTAAACCATTTTT-CATG
1 AAAT-TTAAAACATTTTTCCATG
* *
1977343 AAATTTAAAATATTTTTCCTTG
1 AAATTTAAAACATTTTTCCATG
1977365 AAATT
1 AAATT
1977370 GTGTCAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (22 bp):
AAATTTAAAACATTTTTCCATG
Found at i:1978196 original size:101 final size:102
Alignment explanation
Indices: 1978091--1978273 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 102
1978081 TTCAAACTAA
*
1978091 TCAAGGCTTAAATTTTATTTTTACTTAAATTGTCAAAATT-GAGGAAACTCCAACCCTA-TCTTC
1 TCAAGACTTAAATTTTATTTTTACTTAAATTGTCAAAATTGGA-GAAACTCCAACCCTACTCTTC
* *
1978154 TGAAAGGATACTTCAACCCCATTTTTTTATTAAACTCG
65 TGAAAAGATACTCCAACCCCATTTTTTTATTAAACTCG
* * * *
1978192 TCAAGACTTAAATTTTATTTTTATTTAAATTGTCAACATTGGAGATACTTCAACCCTACTCTTCT
1 TCAAGACTTAAATTTTATTTTTACTTAAATTGTCAAAATTGGAGAAACTCCAACCCTACTCTTCT
1978257 GAAAAGATACTCCAACC
66 GAAAAGATACTCCAACC
1978274 TCGTTTTTAA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 50 0.68
102 23 0.32
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.37
Consensus pattern (102 bp):
TCAAGACTTAAATTTTATTTTTACTTAAATTGTCAAAATTGGAGAAACTCCAACCCTACTCTTCT
GAAAAGATACTCCAACCCCATTTTTTTATTAAACTCG
Found at i:1978322 original size:97 final size:98
Alignment explanation
Indices: 1978092--1978323 Score: 238
Period size: 101 Copynumber: 2.3 Consensus size: 98
1978082 TCAAACTAAT
* *
1978092 CAAGGCTTAAATTTTATTTTTACTTAAATTGTCAAAATTGAGGAAACTCCAACCCTATCTTCTGA
1 CAAGACTTAAATTTTATTTTT-CTTTAATTGTCAAAATTGAGGAAACTCCAACCCTATCTTCTGA
* * * *
1978157 AAGGATACTTCAACCCCATTTTTTTATTAAACTCGT
65 AAAGATACTCCAACCCCA-GTTTTTA-TAAACTCGC
* * * *
1978193 CAAGACTTAAATTTTATTTTTATTTAAATTGTCAACATTG-GAGATACTTCAACCCTACTCTTCT
1 CAAGACTTAAATTTTATTTTTCTTT-AATTGTCAAAATTGAG-GAAACTCCAACCCTA-TCTTCT
* **
1978257 GAAAAGATACTCCAACCTC-GTTTTTA-AATTTC-C
63 GAAAAGATACTCCAACCCCAGTTTTTATAAACTCGC
* *
1978290 CAAGATTTAAATCTTATTTTTGCTTTAATTGTCA
1 CAAGACTTAAATTTTATTTTT-CTTTAATTGTCA
1978324 TCGTCGAGGA
Statistics
Matches: 111, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
97 27 0.24
98 7 0.06
100 9 0.08
101 46 0.41
102 22 0.20
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (98 bp):
CAAGACTTAAATTTTATTTTTCTTTAATTGTCAAAATTGAGGAAACTCCAACCCTATCTTCTGAA
AAGATACTCCAACCCCAGTTTTTATAAACTCGC
Found at i:1979529 original size:2 final size:2
Alignment explanation
Indices: 1979522--1979584 Score: 81
Period size: 2 Copynumber: 31.5 Consensus size: 2
1979512 CCATTCCAAT
* * *
1979522 TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TT TC CC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
1979564 TC TC TT TC TC TC TT TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC T
1979585 TCTTTCTTTC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (2 bp):
TC
Found at i:1979599 original size:8 final size:8
Alignment explanation
Indices: 1979522--1979595 Score: 71
Period size: 8 Copynumber: 9.1 Consensus size: 8
1979512 CCATTCCAAT
*
1979522 TCTCTCTC
1 TCTCTTTC
*
1979530 TCTCTCTC
1 TCTCTTTC
*
1979538 TCTCTCTC
1 TCTCTTTC
1979546 TCT-TTCTC
1 TCTCTT-TC
1979554 TCTCTTTCCC
1 TCTCTTT--C
1979564 TCTCTTTC
1 TCTCTTTC
1979572 TCTCTTTC
1 TCTCTTTC
1979580 TCTC-TTC
1 TCTCTTTC
*
1979587 TTTCTTTC
1 TCTCTTTC
1979595 T
1 T
1979596 TTCTGTAGTA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
7 7 0.12
8 42 0.71
9 2 0.03
10 8 0.14
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (8 bp):
TCTCTTTC
Found at i:1981013 original size:30 final size:30
Alignment explanation
Indices: 1980950--1981016 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
1980940 TAATCTAGAA
* *
1980950 TTAAAAAAAATCAAATCAAAATCTTAAATT
1 TTAAAAAAAATCAAATCAAAATCTAAAAAT
*
1980980 TTAAAACAAATCAAATCAAAATC-AACAAAT
1 TTAAAAAAAATCAAATCAAAATCTAA-AAAT
1981010 TTAAAAA
1 TTAAAAA
1981017 TCATAACAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (30 bp):
TTAAAAAAAATCAAATCAAAATCTAAAAAT
Found at i:1986415 original size:28 final size:28
Alignment explanation
Indices: 1986310--1986975 Score: 539
Period size: 28 Copynumber: 23.3 Consensus size: 28
1986300 TTTAAAAAAA
* *
1986310 GGTGCCACTAACTTGTGTGGACTTTGAAAA
1 GGTGCCACTGACTTGTG-GG-CTTTGAAAT
*
1986340 GAGTTGCCA-TCGACTCGTGTGGGCTTTGAAAG
1 G-G-TGCCACT-GACT--TGTGGGCTTTGAAAT
* * *
1986372 GGTATGCCATTGACTTGTGGGTTTTAAAAT
1 GG--TGCCACTGACTTGTGGGCTTTGAAAT
* *
1986402 GGTGCCACTAACTTGTGGGCTTCGAAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
* * *
1986430 GATGCCACTAACTTGTGGGTTTTGAAA-
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
* *
1986457 GGATGCCGCTGACTTGTGGGCTTT-AAAA
1 GG-TGCCACTGACTTGTGGGCTTTGAAAT
*
1986485 GGATACCACTGACTTGTGGGCTTTGAAAT
1 GG-TGCCACTGACTTGTGGGCTTTGAAAT
* * *
1986514 GATGCCACTGACTTGTAGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
* *
1986542 GGTGTCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
*
1986570 GGTGCCACTGACTTATGGGCTTTGAAA-
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
*
1986597 GGATGCCACTAACTTGTGGGCTTTGAAAT
1 GG-TGCCACTGACTTGTGGGCTTTGAAAT
*
1986626 AGTGCCACTGACTTGTGGGCTTTGAAA-
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
* * * *
1986653 GGATGCTACTGAATTGTGGGC-TTAAAAA
1 GG-TGCCACTGACTTGTGGGCTTTGAAAT
* * * * *
1986681 GATACCACGGAGTTGTAGGCTTTGAAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
* *
1986709 GGGTTGCCACCGACTTATGTGGGCTTTCAAAT
1 -GG-TGCCACTGAC-T-TGTGGGCTTTGAAAT
* *
1986741 GAGTTGCCACCGACTTATGTGGGCTTTAAAAT
1 G-G-TGCCACTGAC-T-TGTGGGCTTTGAAAT
* *
1986773 GAGTTGCCACCGACTTATGGGCTTTGAAAT
1 G-G-TGCCACTGACTTGTGGGCTTTGAAAT
*
1986803 GATGCCACTGACTTGTGGGCTTTGAAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
*
1986831 GGTGCCATTGACTTGTGGGCTTTGAAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
*
1986859 GATGCCAC-GAACTTGTGGGCTTTGAAA-
1 GGTGCCACTG-ACTTGTGGGCTTTGAAAT
* * * *
1986886 GGATGCCACAGACTTATGGACTTT-AAAG
1 GG-TGCCACTGACTTGTGGGCTTTGAAAT
* * * *
1986914 GGTGCCA-TGGAGTTATGGAC-TTGAAAG
1 GGTGCCACT-GACTTGTGGGCTTTGAAAT
* * *
1986941 GGTGCCACGGAGTTGTGGAC-TT-AAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAT
1986967 AGGTGCCAC
1 -GGTGCCAC
1986976 AGAGTTGTAG
Statistics
Matches: 538, Mismatches: 70, Indels: 59
0.81 0.10 0.09
Matches are distributed among these distances:
26 5 0.01
27 76 0.14
28 319 0.59
29 7 0.01
30 36 0.07
31 6 0.01
32 82 0.15
33 3 0.01
34 4 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAT
Found at i:1986929 original size:27 final size:27
Alignment explanation
Indices: 1986883--1987587 Score: 885
Period size: 27 Copynumber: 26.0 Consensus size: 27
1986873 GTGGGCTTTG
* * * * *
1986883 AAAGGATGCCACAGACTTATGGACTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* * *
1986910 AAAGGGTGCCATGGAGTTATGGACTTG
1 AAAGGGTGCCACGGAGTTGTGGACTTA
1986937 AAAGGGTGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* * *
1986964 AATA-GGTGCCACAGAGTTGTAGACCTA
1 AA-AGGGTGCCACGGAGTTGTGGACTTA
* *
1986991 AAAGGGTGTCACGGAGTGGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
*
1987019 AAAGAGTGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
1987046 AAAGGGTGTCACGGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * *
1987074 AAAGGGTACCACGGAGTTATGGACCTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
1987101 AAAGGGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* * *
1987128 AAAGGGTGCCACAGATTTGTGGACTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987155 AAAGGGTGCCACAGAGTTGTGGGCTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
1987182 AAAGGATGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
**
1987209 AAAGGGTGCCACGGAAATGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987236 AAAGGATGCCACGGAGTTATGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* *
1987264 AAAGGGTGCCACGGAGTTATGGACTTT
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987291 AAAGGGTGCCACAGAGTTGTGGGCTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987318 AAAGGATGCCATGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987345 AAAGGGTGCCACAGAGATGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987372 AAAGGATGCCTCGGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
*
1987400 AAAGGGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
1987427 AATA-GGTGCCACGGAATTGTGGACCTA
1 AA-AGGGTGCCACGGAGTTGTGGACTTA
* *
1987454 AAAGGGTGCCATGGAGTTGTGGACCTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
1987481 AAAGGGTGCCACGGAGTGGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* *
1987509 AAAGGGTGTCACGGAGTTGTGGACCTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
1987536 AAA-GGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
1987562 AAAGAGTGCCACGGAGTTGTGGACTT
1 AAAGGGTGCCACGGAGTTGTGGACTT
1987588 TGAAAAGAAA
Statistics
Matches: 587, Mismatches: 81, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
26 25 0.04
27 439 0.75
28 123 0.21
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (27 bp):
AAAGGGTGCCACGGAGTTGTGGACTTA
Found at i:1987050 original size:136 final size:135
Alignment explanation
Indices: 1986871--1987587 Score: 890
Period size: 136 Copynumber: 5.3 Consensus size: 135
1986861 TGCCACGAAC
* * * * * * *
1986871 TTGTGGGCTTTGAAAG-GATGCCACAGACTTATGGACTTTAAAGGGTGCCATGGAGTTATGGACT
1 TTGTGGACTTTAAAAGAG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACT
* * * * *
1986935 TGAAAGGGTGCCACGGAGTTGTGGACTTAAATAGGTGCCACAGAGTTGTAGACCTAAAAGGGTGT
65 TAAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGTGCCACGGAGTTGTGGACTTAAAAGGGTGC
*
1987000 CACGGAG
129 CACAGAG
* * *
1987007 TGGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGTCACGGAGTTGTGGACTT
1 TTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGAC-T
* * * *
1987072 TAAAAGGGTACCACGGAGTTATGGACCTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGC
65 TAAAAGGGTGCCACGGAGTTGTGGACTTAAAA-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGC
*
1987137 CACAGAT
129 CACAGAG
* * * * *
1987144 TTGTGGACTTT-AAAGGGTGCCACAGAGTTGTGGGCTTAAAAGGATGCCACGGAGTTGTGGACTT
1 TTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACTT
** *
1987208 AAAAGGGTGCCACGGAAATGTGGACTTAAAAGGATGCCACGGAGTTATGGACTTTAAAAGGGTGC
66 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG-TGCCACGGAGTTGTGGAC-TTAAAAGGGTGC
*
1987273 CACGGAG
129 CACAGAG
* * * * *
1987280 TTATGGACTTT-AAAGGGTGCCACAGAGTTGTGGGCTTAAAAGGATGCCATGGAGTTGTGGACTT
1 TTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACTT
* * *
1987344 AAAAGGGTGCCACAGAGATGTGGACTTAAAAGGATGCCTCGGAGTTGTGGACTTTAAAAGGGTGC
66 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG-TGCCACGGAGTTGTGGAC-TTAAAAGGGTGC
1987409 CACAGAG
129 CACAGAG
* * *
1987416 TTGTGGAC-TTAAATAG-GTGCCACGGAATTGTGGACCTAAAAGGGTGCCATGGAGTTGTGGACC
1 TTGTGGACTTTAAA-AGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACT
* * *
1987479 TAAAAGGGTGCCACGGAGTGGTGGACTTTAAAAGGGTGTCACGGAGTTGTGGACCTAAAA-GGTG
65 TAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA-GGTGCCACGGAGTTGTGGACTTAAAAGGGTG
1987543 CCACAGAG
128 CCACAGAG
1987551 TTGTGGAC-TTAAAAGAGTGCCACGGAGTTGTGGACTT
1 TTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTT
1987588 TGAAAAGAAA
Statistics
Matches: 515, Mismatches: 56, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
134 4 0.01
135 90 0.17
136 322 0.63
137 97 0.19
138 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (135 bp):
TTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACTT
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCA
CAGAG
Found at i:1994983 original size:2 final size:2
Alignment explanation
Indices: 1994976--1995028 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
1994966 GAGATTTTCA
1994976 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1995018 AT AT AT AT AT A
1 AT AT AT AT AT A
1995029 CGTATAGATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1998562 original size:3 final size:3
Alignment explanation
Indices: 1998554--1998579 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1998544 AATGACACTA
1998554 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
1998580 ATTTGGCTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:2000568 original size:17 final size:18
Alignment explanation
Indices: 2000533--2000573 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
2000523 TGGTTTAACT
*
2000533 TAATAAATAATATTTATC
1 TAATAAATAATAATTATC
2000551 TAATAAAT-ATAATTATC
1 TAATAAATAATAATTATC
2000568 TAATAA
1 TAATAA
2000574 TTGTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
TAATAAATAATAATTATC
Found at i:2003387 original size:22 final size:22
Alignment explanation
Indices: 2003345--2003389 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
2003335 TGAAAAATAA
*
2003345 TAAAAAACATTGAAAACTGATT
1 TAAAAAACATTAAAAACTGATT
*
2003367 TAAAAAA-ATTAAATAAGTGATT
1 TAAAAAACATTAAA-AACTGATT
2003389 T
1 T
2003390 TTTTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (22 bp):
TAAAAAACATTAAAAACTGATT
Found at i:2004690 original size:10 final size:10
Alignment explanation
Indices: 2004677--2004714 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
2004667 GTTTTGTAAC
2004677 TTTTTTTGGT
1 TTTTTTTGGT
2004687 TTTTTTTGGTTT
1 TTTTTTTGG--T
2004699 TTTTTTTGGT
1 TTTTTTTGGT
2004709 TTTTTT
1 TTTTTT
2004715 AAGAGAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 16 0.62
12 10 0.38
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (10 bp):
TTTTTTTGGT
Found at i:2004692 original size:12 final size:12
Alignment explanation
Indices: 2004677--2004714 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
2004667 GTTTTGTAAC
2004677 TTTTTTTGG--T
1 TTTTTTTGGTTT
2004687 TTTTTTTGGTTT
1 TTTTTTTGGTTT
2004699 TTTTTTTGGTTT
1 TTTTTTTGGTTT
2004711 TTTT
1 TTTT
2004715 AAGAGAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.35
12 17 0.65
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TTTTTTTGGTTT
Found at i:2008075 original size:15 final size:15
Alignment explanation
Indices: 2008052--2008096 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
2008042 CAAATGAAAT
*
2008052 CACTTAAGAAGAAGC
1 CACTCAAGAAGAAGC
2008067 CACTCAAGAAGAAGC
1 CACTCAAGAAGAAGC
*
2008082 CATTC-AGAAAGAAGC
1 CACTCAAG-AAGAAGC
2008097 ATAGTAATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 2 0.07
15 25 0.93
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (15 bp):
CACTCAAGAAGAAGC
Found at i:2008379 original size:12 final size:12
Alignment explanation
Indices: 2008362--2008392 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
2008352 AATCATTTTT
2008362 TATTATATAACA
1 TATTATATAACA
*
2008374 TGTTATATAACA
1 TATTATATAACA
2008386 TATTATA
1 TATTATA
2008393 ACATGTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (12 bp):
TATTATATAACA
Found at i:2008530 original size:90 final size:90
Alignment explanation
Indices: 2008400--2008850 Score: 329
Period size: 90 Copynumber: 5.0 Consensus size: 90
2008390 ATAACATGTA
* *
2008400 CTAATAAAATTAATCTTGAAACTCGAAAGAT-ATGACAGATGCATGGGGTATCAGATTCCTTTTG
1 CTAAGAAAATTAATCTTGAAACCCGAAAGATGA--ACAGATGCATGGGGTATCAGATTCCTTTTG
*
2008464 ACATGACAGAAAATATATT-ACTAATAC
64 ACATGACAAAAAATAT-TTGACTAATAC
* ** * * * * *
2008491 CTAAGAAATTTCTTCTTGGAAA-TCGAAA-ATGTAACAGATGCATGAGATATCAAATTCCTTCTG
1 CTAAGAAAATTAATCTT-GAAACCCGAAAGATG-AACAGATGCATGGGGTATCAGATTCCTTTTG
* *
2008554 ACACGACAAAAAATATTTGACTAATGC
64 ACATGACAAAAAATATTTGACTAATAC
* * * *
2008581 CTAATAAAATTAATCTTGAAACCCGAAAGATGGACAGATACATGGGGTATTAGATT-CTTTCTGA
1 CTAAGAAAATTAATCTTGAAACCCGAAAGATGAACAGATGCATGGGGTATCAGATTCCTTT-TGA
*
2008645 CATGACACAAAATATTTGA-TAA-AGGC
65 CATGACAAAAAATATTTGACTAATA--C
* * * * ** *
2008671 TTAA-TAAATT--TCTTGAGACCCAAAAGAT-ATGACAGATGCATGGATTATCAGATTCCTTCTG
1 CTAAGAAAATTAATCTTGAAACCCGAAAGATGA--ACAGATGCATGGGGTATCAGATTCCTTTTG
* * * **
2008732 ACATTACAAAAAATATTTCACCAAGGC
64 ACATGACAAAAAATATTTGACTAATAC
* * * * * * *
2008759 TTAA-TAAATT--TTTTGAAACCTGAAAGATGTGACAGATGCATGGGGTATCAAATT-CTTACTG
1 CTAAGAAAATTAATCTTGAAACCCGAAAGATG-AACAGATGCATGGGGTATCAGATTCCTT-TTG
* * *
2008820 ATACGATAAAAAATATTTGACTAATAC
64 ACATGACAAAAAATATTTGACTAATAC
2008847 CTAA
1 CTAA
2008851 TAAATTTCTT
Statistics
Matches: 285, Mismatches: 58, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
87 19 0.07
88 108 0.38
89 22 0.08
90 109 0.38
91 22 0.08
92 5 0.02
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (90 bp):
CTAAGAAAATTAATCTTGAAACCCGAAAGATGAACAGATGCATGGGGTATCAGATTCCTTTTGAC
ATGACAAAAAATATTTGACTAATAC
Found at i:2008870 original size:176 final size:176
Alignment explanation
Indices: 2008400--2008874 Score: 509
Period size: 176 Copynumber: 2.7 Consensus size: 176
2008390 ATAACATGTA
* *
2008400 CTAATAAAATTAATCTTGAAA-CTCGAAAGATATGACAGATGCATGGGGTATCAGATTCCTTTTG
1 CTAATAAAATT-ATCTTGAAACCT-GAAAGATGTGACAGATGCATGGGGTATCAGATT-CTTCTG
* * ** * *
2008464 ACATGACAGAAAATATATT-ACTAATACCTAAGAAATTTCTTCTTGGAAATCGAAA-ATGTAACA
63 ACATGACAAAAAATAT-TTGACTAATACCTAATAAA--T-TTCTT-GAACCCAAAAGATATAACA
* * *
2008527 GATGCATGAGATATCAAATTCCTTCTGACACGACAAAAAATATTTGACTAATGC
123 GATGCATGAGATATCAAATTCCTTCTGACACGACAAAAAATATTTCACCAAGGC
* * *
2008581 CTAATAAAATTAATCTTGAAACCCGAAAGATG-GACAGATACATGGGGTATTAGATTCTTTCTGA
1 CTAATAAAATT-ATCTTGAAACCTGAAAGATGTGACAGATGCATGGGGTATCAGATTC-TTCTGA
* * *
2008645 CATGACACAAAATATTTGA-TAA-AGGCTTAATAAATTTCTTGAGACCCAAAAGATATGACAGAT
64 CATGACAAAAAATATTTGACTAATA--CCTAATAAATTTCTTGA-ACCCAAAAGATATAACAGAT
* **
2008708 GCATG-GATTATCAGATTCCTTCTGACATTACAAAAAATATTTCACCAAGGC
126 GCATGAGA-TATCAAATTCCTTCTGACACGACAAAAAATATTTCACCAAGGC
* * * *
2008759 TTAAT-AAATT-TTTTGAAACCTGAAAGATGTGACAGATGCATGGGGTATCAAATTCTTACTGAT
1 CTAATAAAATTATCTTGAAACCTGAAAGATGTGACAGATGCATGGGGTATCAGATTCTT-CTGAC
* *
2008822 ACGATAAAAAATATTTGACTAATACCTAATAAATTTCTTAGAACCCAAAAGAT
65 ATGACAAAAAATATTTGACTAATACCTAATAAATTTCTT-GAACCCAAAAGAT
2008875 GTGATAAATG
Statistics
Matches: 251, Mismatches: 30, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
175 19 0.08
176 68 0.27
177 22 0.09
178 58 0.23
179 6 0.02
180 49 0.20
181 28 0.11
182 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (176 bp):
CTAATAAAATTATCTTGAAACCTGAAAGATGTGACAGATGCATGGGGTATCAGATTCTTCTGACA
TGACAAAAAATATTTGACTAATACCTAATAAATTTCTTGAACCCAAAAGATATAACAGATGCATG
AGATATCAAATTCCTTCTGACACGACAAAAAATATTTCACCAAGGC
Found at i:2008932 original size:88 final size:88
Alignment explanation
Indices: 2008413--2008932 Score: 453
Period size: 88 Copynumber: 5.9 Consensus size: 88
2008403 ATAAAATTAA
* * * * *
2008413 TCTTGAAACTCGAAAGATATGACAGATGCATGGGGTATCAGATTCCTTT-TGACATGACAGAAAA
1 TCTTGAAACCCAAAAGATGTGACAGATGCATGGGGTATCAAATT-CTTTCTGACATGACAAAAAA
*
2008477 TATATT-ACTAATACCTAAGAAATTTCT
65 TAT-TTGACTAATACCTAATAAA--T-T
* * * * * * *
2008504 TCTTGGAAA-TCGAAA-ATGTAACAGATGCATGAGATATCAAATTCCTTCTGACACGACAAAAAA
1 TCTT-GAAACCCAAAAGATGTGACAGATGCATGGGGTATCAAATTCTTTCTGACATGACAAAAAA
*
2008567 TATTTGACTAATGCCTAATAAAATT
65 TATTTGACTAATACCTAAT-AAATT
* * * * *
2008592 AATCTTGAAACCCGAAAGATG-GACAGATACATGGGGTATTAGATTCTTTCTGACATGACACAAA
1 --TCTTGAAACCCAAAAGATGTGACAGATGCATGGGGTATCAAATTCTTTCTGACATGACAAAAA
*
2008656 ATATTTGA-TAA-AGGCTTAATAAATT
64 ATATTTGACTAATA--CCTAATAAATT
* * ** * * *
2008681 TCTTGAGACCCAAAAGATATGACAGATGCATGGATTATCAGATTCCTTCTGACATTACAAAAAAT
1 TCTTGAAACCCAAAAGATGTGACAGATGCATGGGGTATCAAATTCTTTCTGACATGACAAAAAAT
* * ** *
2008746 ATTTCACCAAGGCTTAATAAATT
66 ATTTGACTAATACCTAATAAATT
* ** * * * *
2008769 TTTTGAAACCTGAAAGATGTGACAGATGCATGGGGTATCAAATTCTTACTGATACGATAAAAAAT
1 TCTTGAAACCCAAAAGATGTGACAGATGCATGGGGTATCAAATTCTTTCTGACATGACAAAAAAT
2008834 ATTTGACTAATACCTAATAAATT
66 ATTTGACTAATACCTAATAAATT
* * * * * * *
2008857 TCTT-AGAACCCAAAAGATGTGATAAATGTATGGGGTATCAAATTCTTTCTGATATAATAGAAAA
1 TCTTGA-AACCCAAAAGATGTGACAGATGCATGGGGTATCAAATTCTTTCTGACATGACAAAAAA
*
2008921 TATTTTACTAAT
65 TATTTGACTAAT
2008933 GACATGATAA
Statistics
Matches: 350, Mismatches: 65, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
87 17 0.05
88 187 0.53
89 20 0.06
90 106 0.30
91 16 0.05
92 4 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (88 bp):
TCTTGAAACCCAAAAGATGTGACAGATGCATGGGGTATCAAATTCTTTCTGACATGACAAAAAAT
ATTTGACTAATACCTAATAAATT
Found at i:2012256 original size:18 final size:19
Alignment explanation
Indices: 2012233--2012273 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
2012223 TAACTATAAT
*
2012233 TAATAAAAAT-TAATAAAA
1 TAATAAAAATAAAATAAAA
2012251 TAAT-AAAATAAAATAAAA
1 TAATAAAAATAAAATAAAA
2012269 TAATA
1 TAATA
2012274 TATATTGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
TAATAAAAATAAAATAAAA
Found at i:2012348 original size:19 final size:19
Alignment explanation
Indices: 2012326--2012382 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
2012316 AAAATGTTGT
2012326 AAAAAAAACCAAAAAAATA
1 AAAAAAAACCAAAAAAATA
* *
2012345 AAAAAAAAACAAAAAAAGTC
1 AAAAAAAACCAAAAAAA-TA
* *
2012365 ACAAAAAACAAAAAAAAT
1 AAAAAAAACCAAAAAAAT
2012383 GTAAATTCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.82, C:0.11, G:0.02, T:0.05
Consensus pattern (19 bp):
AAAAAAAACCAAAAAAATA
Found at i:2012931 original size:13 final size:12
Alignment explanation
Indices: 2012904--2012945 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 12
2012894 ATCTTTTTAC
*
2012904 TAATATA-TGTT
1 TAATATATTTTT
*
2012915 TAATATCTTTATT
1 TAATATATTT-TT
2012928 TAATATATTTTT
1 TAATATATTTTT
2012940 TAATAT
1 TAATAT
2012946 TAATACGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 6 0.23
12 9 0.35
13 11 0.42
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (12 bp):
TAATATATTTTT
Found at i:2013319 original size:2 final size:2
Alignment explanation
Indices: 2013282--2013308 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2013272 AAGAAAAGTT
2013282 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2013309 TGTAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2014017 original size:21 final size:22
Alignment explanation
Indices: 2013968--2014019 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
2013958 AGTACTTGAT
2013968 TTTATT-ATTTTATATAATAAA
1 TTTATTAATTTTATATAATAAA
* *
2013989 TTCT-TTAATTTTTTTTAA-AAA
1 TT-TATTAATTTTATATAATAAA
2014010 TTTATTAATT
1 TTTATTAATT
2014020 GAGTTGAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 1 0.04
21 15 0.58
22 10 0.38
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTATTAATTTTATATAATAAA
Found at i:2016199 original size:26 final size:26
Alignment explanation
Indices: 2016170--2016221 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2016160 GCAACAGTCA
*
2016170 GGATTCATA-CTTGAAACTACTGATAT
1 GGATTCA-ACCTTGAAACCACTGATAT
*
2016196 GGATTCAACCTTGAAGCCACTGATAT
1 GGATTCAACCTTGAAACCACTGATAT
2016222 CATGTTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (26 bp):
GGATTCAACCTTGAAACCACTGATAT
Found at i:2018218 original size:18 final size:17
Alignment explanation
Indices: 2018186--2018219 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
2018176 ATTAGAATTG
2018186 ATAATTTAAAACATAAT
1 ATAATTTAAAACATAAT
*
2018203 ATAATTATACAACATAA
1 ATAATT-TAAAACATAA
2018220 ATACAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATTTAAAACATAAT
Found at i:2018606 original size:55 final size:57
Alignment explanation
Indices: 2018516--2018634 Score: 197
Period size: 55 Copynumber: 2.1 Consensus size: 57
2018506 TCGCCAGTTT
* * *
2018516 TTTTTTTATTTTTCTATAATTTTTAATTCTTAAT-AAAAATCAA-TTTTAATTAAAA
1 TTTTTATATTTTTCTATAATTTTTAATTATCAATAAAAAATCAATTTTTAATTAAAA
2018571 TTTTTATATTTTTCTATAATTTTTAATTATCAATAAAAAATCAATTTTTAATTAAAA
1 TTTTTATATTTTTCTATAATTTTTAATTATCAATAAAAAATCAATTTTTAATTAAAA
2018628 TTTTTAT
1 TTTTTAT
2018635 TTAAAAATCA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 31 0.53
56 9 0.15
57 19 0.32
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (57 bp):
TTTTTATATTTTTCTATAATTTTTAATTATCAATAAAAAATCAATTTTTAATTAAAA
Found at i:2018851 original size:19 final size:19
Alignment explanation
Indices: 2018799--2018851 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
2018789 ACAAATCATT
2018799 TTAAATATATAATTTAAAAA
1 TTAAATATAT-ATTTAAAAA
* * *
2018819 TTAAATAAAAATTTAATTAA
1 TTAAATATATATTTAA-AAA
2018839 -TAAATATATATTT
1 TTAAATATATATTT
2018852 TGAATTTTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAAATATATATTTAAAAA
Found at i:2018947 original size:15 final size:15
Alignment explanation
Indices: 2018929--2018977 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
2018919 TAAATATATT
2018929 ATTTAAAAATATAAA
1 ATTTAAAAATATAAA
* *
2018944 ATTTAAATATAAAAA
1 ATTTAAAAATATAAA
*
2018959 ATTAAAAAAATAATAAA
1 ATT-TAAAAAT-ATAAA
2018976 AT
1 AT
2018978 AAATTTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 16 0.59
16 5 0.19
17 6 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATTTAAAAATATAAA
Found at i:2020321 original size:7 final size:7
Alignment explanation
Indices: 2020284--2020318 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
2020274 TTATATTATA
2020284 TGGCACT
1 TGGCACT
2020291 TGGCACT
1 TGGCACT
2020298 TGGCACT
1 TGGCACT
*
2020305 TGGACACG
1 TGG-CACT
2020313 TGGCAC
1 TGGCAC
2020319 GTGCAAGCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (7 bp):
TGGCACT
Found at i:2020368 original size:3 final size:3
Alignment explanation
Indices: 2020356--2020402 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
2020346 TAATTAATTA
2020356 ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
2020403 TTTTATGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:2024737 original size:24 final size:24
Alignment explanation
Indices: 2024702--2024753 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
2024692 TACCTAAATA
*
2024702 TAAAT-TTT-AAAATTATAAATAT
1 TAAATATTTAAAAATTATAAACAT
* *
2024724 TTAATATTTAAAAATTTTAAACAT
1 TAAATATTTAAAAATTATAAACAT
2024748 TAAATA
1 TAAATA
2024754 AATAAATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 4 0.17
23 3 0.12
24 17 0.71
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAATATTTAAAAATTATAAACAT
Found at i:2024742 original size:16 final size:15
Alignment explanation
Indices: 2024703--2024751 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
2024693 ACCTAAATAT
*
2024703 AAATTTTAAAATTAT
1 AAATTTTAAAATTAA
*
2024718 AAATATTTAATATTTAA
1 AAAT-TTTAA-AATTAA
2024735 AAATTTTAAACATTAA
1 AAATTTTAAA-ATTAA
2024751 A
1 A
2024752 TAAATAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 5 0.18
16 15 0.54
17 8 0.29
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATTTTAAAATTAA
Found at i:2025900 original size:19 final size:19
Alignment explanation
Indices: 2025869--2025913 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
2025859 TCTTATAATT
2025869 TTTTTTTTA-TTT-TACTTA
1 TTTTTTTTATTTTGTA-TTA
2025887 TTTTTTTTAGTTTTGTATTA
1 TTTTTTTTA-TTTTGTATTA
2025907 TTTTTTT
1 TTTTTTT
2025914 CGTTAAGTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.38
20 13 0.54
21 2 0.08
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (19 bp):
TTTTTTTTATTTTGTATTA
Found at i:2026422 original size:15 final size:15
Alignment explanation
Indices: 2026374--2026423 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
2026364 CATCGTTTGT
* *
2026374 GCTTCTTCTTAAATG
1 GCTTCTTCTTGAGTG
*
2026389 GCTTCTTCTTGAGTA
1 GCTTCTTCTTGAGTG
* *
2026404 GCTTTTTCTTGGGTG
1 GCTTCTTCTTGAGTG
2026419 GCTTC
1 GCTTC
2026424 ATCGGCAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.10, C:0.20, G:0.22, T:0.48
Consensus pattern (15 bp):
GCTTCTTCTTGAGTG
Found at i:2027434 original size:9 final size:8
Alignment explanation
Indices: 2027421--2027458 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
2027411 CTCTTCTTTT
2027421 TTTTTTAA
1 TTTTTTAA
2027429 TTTTTTAA
1 TTTTTTAA
*
2027437 TTATTTAAA
1 TT-TTTTAA
2027446 TTTTTTAA
1 TTTTTTAA
2027454 TTTTT
1 TTTTT
2027459 AACATATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTAA
Found at i:2027449 original size:17 final size:16
Alignment explanation
Indices: 2027421--2027460 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
2027411 CTCTTCTTTT
*
2027421 TTTTTTAATTTTTTAA
1 TTTTTAAATTTTTTAA
2027437 TTATTTAAATTTTTTAA
1 TT-TTTAAATTTTTTAA
2027454 TTTTTAA
1 TTTTTAA
2027461 CATATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTAAATTTTTTAA
Found at i:2027471 original size:25 final size:25
Alignment explanation
Indices: 2027421--2027476 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
2027411 CTCTTCTTTT
* **
2027421 TTTTTTAATTTTTTAATTATTTAAA
1 TTTTTTAATTTTTTAAATATAAAAA
2027446 TTTTTTAA-TTTTTAACATATAAAAA
1 TTTTTTAATTTTTTAA-ATATAAAAA
2027471 TTTTTT
1 TTTTTT
2027477 TCATCTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTTAATTTTTTAAATATAAAAA
Found at i:2029185 original size:23 final size:24
Alignment explanation
Indices: 2029145--2029191 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
2029135 TATTTAAGCC
2029145 TTCAAAATAGTTAAAAATA-TAAA
1 TTCAAAATAGTTAAAAATACTAAA
*
2029168 TTCAAAATTA-TTATAAATACTAAA
1 TTCAAAA-TAGTTAAAAATACTAAA
2029192 GCTCGGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.34
Consensus pattern (24 bp):
TTCAAAATAGTTAAAAATACTAAA
Found at i:2030448 original size:110 final size:110
Alignment explanation
Indices: 2030316--2030569 Score: 309
Period size: 112 Copynumber: 2.3 Consensus size: 110
2030306 TTGATAGGTT
* * * ** * * *
2030316 TTTAAAATTTTATCTTTTATTAATTATTGTGATTTAAGTGAAAG-ATAAAAAATTATCATGATTT
1 TTTATAATTTTATCTTTTATTAATCATTGTAATCCAAATAAAAGAATAAAAAATTATCACGATTT
* *
2030380 TT-TGGATAATTGTTATTTTAAATTTTAAAATAATGAA-ACTA-ATAAA
66 TTAT-GATAATTGTTA-TCTAAATTTCAAAATAAT-AAGA-TAGATAAA
*
2030426 TTTATAATTTTATCTTTCATTAATCATTGTAATCCAAATAAAAGATAATAAAAAATTATCACGAT
1 TTTATAATTTTATCTTTTATTAATCATTGTAATCCAAATAAAAG--AATAAAAAATTATCACGAT
2030491 TTTTATGATAATTGTTATCTAAATTTCAAAATAATAAGATAGATAAA
64 TTTTATGATAATTGTTATCTAAATTTCAAAATAATAAGATAGATAAA
* *
2030538 TTTATAATTTTATCTTTTATTAACCAATGTAA
1 TTTATAATTTTATCTTTTATTAATCATTGTAA
2030570 ATTAATCTAG
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
110 36 0.29
111 4 0.03
112 51 0.41
113 32 0.26
114 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (110 bp):
TTTATAATTTTATCTTTTATTAATCATTGTAATCCAAATAAAAGAATAAAAAATTATCACGATTT
TTATGATAATTGTTATCTAAATTTCAAAATAATAAGATAGATAAA
Found at i:2030516 original size:112 final size:113
Alignment explanation
Indices: 2030360--2030569 Score: 311
Period size: 112 Copynumber: 1.9 Consensus size: 113
2030350 TAAGTGAAAG
* * *
2030360 ATAAAAAATTATCATGATTTTTTGGATAATTGTTATTTTAAATTTTAAAATAATGAA-ACTA-AT
1 ATAAAAAATTATCACGATTTTTTGGATAATTGTTATTCTAAATTTCAAAATAAT-AAGA-TAGAT
* *
2030423 AAATTTATAATTTTATCTTTCATTAATCATTGTAATCCAAATAAAAGATA
64 AAATTTATAATTTTATCTTTCATTAACCAATGTAATCCAAATAAAAGATA
2030473 ATAAAAAATTATCACGATTTTTAT-GATAATTGTTA-TCTAAATTTCAAAATAATAAGATAGATA
1 ATAAAAAATTATCACGATTTTT-TGGATAATTGTTATTCTAAATTTCAAAATAATAAGATAGATA
*
2030536 AATTTATAATTTTATCTTTTATTAACCAATGTAA
65 AATTTATAATTTTATCTTTCATTAACCAATGTAA
2030570 ATTAATCTAG
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
111 4 0.05
112 51 0.58
113 32 0.36
114 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (113 bp):
ATAAAAAATTATCACGATTTTTTGGATAATTGTTATTCTAAATTTCAAAATAATAAGATAGATAA
ATTTATAATTTTATCTTTCATTAACCAATGTAATCCAAATAAAAGATA
Found at i:2030939 original size:46 final size:46
Alignment explanation
Indices: 2030865--2030987 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 46
2030855 ATATATATAA
* *
2030865 TTAATTTAATTTAATTTAATTATG-GATAAAATTCTATTATTTTTCT-
1 TTAA-TTAATTTAATTTAATTA-GAGATAAAATTCTATCATTTATCTC
* *
2030911 TGTAATTGATTTAATTTAATTAGAGAT--AATTTTATCATTTATCTC
1 T-TAATTAATTTAATTTAATTAGAGATAAAATTCTATCATTTATCTC
* * *
2030956 TTACTTAATCTATTTTAATTAGAGATAAAATT
1 TTAATTAATTTAATTTAATTAGAGATAAAATT
2030988 TGATTAATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
44 35 0.55
45 2 0.03
46 24 0.38
47 3 0.05
ACGTcount: A:0.36, C:0.06, G:0.07, T:0.52
Consensus pattern (46 bp):
TTAATTAATTTAATTTAATTAGAGATAAAATTCTATCATTTATCTC
Found at i:2034851 original size:19 final size:19
Alignment explanation
Indices: 2034793--2034851 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
2034783 AATAATTTTG
*
2034793 ATGATGCAAATGC-AACGA
1 ATGATGCAAATGCTCACGA
* **
2034811 ATAATGCAAAAACTCACGA
1 ATGATGCAAATGCTCACGA
2034830 ATGATGCAAATGCTCACGA
1 ATGATGCAAATGCTCACGA
2034849 ATG
1 ATG
2034852 CAATTGTAGT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
18 10 0.30
19 23 0.70
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (19 bp):
ATGATGCAAATGCTCACGA
Found at i:2034953 original size:69 final size:70
Alignment explanation
Indices: 2034839--2034978 Score: 201
Period size: 69 Copynumber: 2.0 Consensus size: 70
2034829 AATGATGCAA
* * * *
2034839 ATGCTCACGAATGCAATTGTAGTTAATTAAAATTCAACATTAAATTAATTTTGGAAAAAATTTTG
1 ATGCTCACAAATGCAAATGCAATTAATTAAAATTCAACATTAAATTAATTTTGGAAAAAATTTTG
2034904 CGTCT
66 CGTCT
* ** *
2034909 ATGCTCACAAATGCAAATGCAATT-ATTGAAATTTGACATTAAATTAATTTTGGACAAAATTTTG
1 ATGCTCACAAATGCAAATGCAATTAATTAAAATTCAACATTAAATTAATTTTGGAAAAAATTTTG
2034973 CGTCT
66 CGTCT
2034978 A
1 A
2034979 CATTCCTCAA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
69 42 0.68
70 20 0.32
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (70 bp):
ATGCTCACAAATGCAAATGCAATTAATTAAAATTCAACATTAAATTAATTTTGGAAAAAATTTTG
CGTCT
Found at i:2037687 original size:28 final size:29
Alignment explanation
Indices: 2037651--2037712 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
2037641 TGACAAAAAC
* * *
2037651 ATAATTTAC-TTTAATTATATTTTTAAAT
1 ATAAATTACTTTTAATTAAATTATTAAAT
2037679 ATAAATTACTTTTAATTAAATTATTAAAT
1 ATAAATTACTTTTAATTAAATTATTAAAT
2037708 ATAAA
1 ATAAA
2037713 AATTAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (29 bp):
ATAAATTACTTTTAATTAAATTATTAAAT
Found at i:2040656 original size:19 final size:20
Alignment explanation
Indices: 2040619--2040658 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
2040609 TTTAAAAATA
* *
2040619 AATATAAATAATTTTATTTT
1 AATATAAATAATATAATTTT
2040639 AATA-AAATAATATAATTTT
1 AATATAAATAATATAATTTT
2040658 A
1 A
2040659 TTTATTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATAAATAATATAATTTT
Found at i:2040676 original size:28 final size:24
Alignment explanation
Indices: 2040615--2040661 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
2040605 TATTTTTAAA
2040615 AATAAATATAAATAATTTTATTTT
1 AATAAATATAAATAATTTTATTTT
2040639 AATAAA-ATAATATAATTTTATTT
1 AATAAATATAA-ATAATTTTATTT
2040662 ATTTATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
AATAAATATAAATAATTTTATTTT
Found at i:2043002 original size:27 final size:27
Alignment explanation
Indices: 2042965--2043035 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
2042955 AAACAACAAG
*
2042965 CCATAATTTTTGACAAAAAAAAAGGAA
1 CCATCATTTTTGACAAAAAAAAAGGAA
* * *
2042992 CCATCATTTTTGACAAATACAAAGTAA
1 CCATCATTTTTGACAAAAAAAAAGGAA
*
2043019 CCACCATTTTTGACAAA
1 CCATCATTTTTGACAAA
2043036 CAAATGGGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.27
Consensus pattern (27 bp):
CCATCATTTTTGACAAAAAAAAAGGAA
Found at i:2047613 original size:22 final size:23
Alignment explanation
Indices: 2047570--2047619 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
2047560 CGGATATACA
2047570 AATATCATATAAAAAATAATTAT
1 AATATCATATAAAAAATAATTAT
* * *
2047593 AATATGATAT-AAAATTTATTAT
1 AATATCATATAAAAAATAATTAT
2047615 AATAT
1 AATAT
2047620 AAAAAATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
AATATCATATAAAAAATAATTAT
Found at i:2048736 original size:29 final size:29
Alignment explanation
Indices: 2048677--2048737 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
2048667 AAATAGTATC
* *
2048677 ATAATTATTTTTCAAATATTTTTATATAT
1 ATAATTATTTTTCAAATATTTTAATAAAT
2048706 ATAATTTATTTTT-AAA-ATTTTAATAAAAT
1 ATAA-TTATTTTTCAAATATTTTAAT-AAAT
2048735 ATA
1 ATA
2048738 TATGCCTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 7 0.25
29 13 0.46
30 8 0.29
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (29 bp):
ATAATTATTTTTCAAATATTTTAATAAAT
Found at i:2050345 original size:23 final size:23
Alignment explanation
Indices: 2050307--2050378 Score: 101
Period size: 22 Copynumber: 3.1 Consensus size: 23
2050297 TTTGTTATAA
*
2050307 TTAGATTTTAATTGAGCTTTTAGT
1 TTAGA-TTTAAATGAGCTTTTAGT
*
2050331 TTAGATTTAAATGAGC-TTTAAT
1 TTAGATTTAAATGAGCTTTTAGT
*
2050353 TTAGATTTAAACGAGCTTTTAGT
1 TTAGATTTAAATGAGCTTTTAGT
2050376 TTA
1 TTA
2050379 AGTTTAACGG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
22 20 0.47
23 18 0.42
24 5 0.12
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.49
Consensus pattern (23 bp):
TTAGATTTAAATGAGCTTTTAGT
Found at i:2051100 original size:31 final size:31
Alignment explanation
Indices: 2051065--2051146 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
2051055 TAAACAAGAA
2051065 AAAATATATATAATATAAATTATTACATATC
1 AAAATATATATAATATAAATTATTACATATC
* * *
2051096 AAAATCTATATAATATGAATTATTATATATC
1 AAAATATATATAATATAAATTATTACATATC
* *
2051127 AAAATTTATAAAAATATAAA
1 AAAATATAT-ATAATATAAA
2051147 ATAATTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 36 0.82
32 8 0.18
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAATATATATAATATAAATTATTACATATC
Found at i:2052643 original size:2 final size:2
Alignment explanation
Indices: 2052631--2052660 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
2052621 CCATTCCATT
*
2052631 TC TC GC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
2052661 CTTCCTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
TC
Found at i:2052979 original size:31 final size:32
Alignment explanation
Indices: 2052944--2053003 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
2052934 TAAAATAATT
*
2052944 TTTAATATATTAATA-ATTAATATTATATCAA
1 TTTAATATATTAATACATTAATATAATATCAA
*
2052975 TTTAATATATTTATACATTAATATAATAT
1 TTTAATATATTAATACATTAATATAATAT
2053004 TTATATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (32 bp):
TTTAATATATTAATACATTAATATAATATCAA
Found at i:2052995 original size:16 final size:16
Alignment explanation
Indices: 2052945--2052999 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
2052935 AAAATAATTT
*
2052945 TTAATATATTAATA-A
1 TTAATATATTTATACA
*
2052960 TTAATAT-TATAT-CAA
1 TTAATATATTTATAC-A
2052975 TTTAATATATTTATACA
1 -TTAATATATTTATACA
2052992 TTAATATA
1 TTAATATA
2053000 ATATTTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
14 3 0.09
15 8 0.25
16 15 0.47
17 5 0.16
18 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAATATATTTATACA
Found at i:2055246 original size:51 final size:51
Alignment explanation
Indices: 2055124--2055268 Score: 150
Period size: 51 Copynumber: 2.8 Consensus size: 51
2055114 CCCAATTGTA
* * **
2055124 AAAAATT-AGTGTTTTGGAAATAAAATCGGAGTTGAAGTATCTCCGATTGCG
1 AAAAATTGA-TGTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAG
** * * *
2055175 GTAAATCGATGCTTTAGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAG
1 AAAAATTGATGTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAG
** *
2055226 AAAAATTGATGTTTTGGAAATGGAACCGG-GATTGGAGTATCCC
1 AAAAATTGATGTTTTGGAAATAAAATCGGAG-TTGGAGTATCCC
2055269 GAGATGAAAA
Statistics
Matches: 75, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
50 1 0.01
51 73 0.97
52 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (51 bp):
AAAAATTGATGTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAG
Found at i:2057569 original size:20 final size:18
Alignment explanation
Indices: 2057544--2057630 Score: 67
Period size: 20 Copynumber: 4.8 Consensus size: 18
2057534 AAAATGCCTG
2057544 AATGTATCGATACATAGTAA
1 AATGTATCGATACA-A-TAA
*
2057564 AATGTATTGATAC-----
1 AATGTATCGATACAATAA
*
2057577 AATGTATCGATACAATGAGC
1 AATGTATCGATACAAT-A-A
2057597 AATGTATCGATACAATGTAA
1 AATGTATCGATACAA--TAA
2057617 AATGTATCGATACA
1 AATGTATCGATACA
2057631 TCTGGGTAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
13 12 0.22
20 41 0.75
21 1 0.02
22 1 0.02
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (18 bp):
AATGTATCGATACAATAA
Found at i:2057581 original size:33 final size:33
Alignment explanation
Indices: 2057544--2057615 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
2057534 AAAATGCCTG
*
2057544 AATGTATCGATAC-AT-AGTAAAATGTATTGATAC
1 AATGTATCGATACAATGAG--AAATGTATCGATAC
*
2057577 AATGTATCGATACAATGAGCAATGTATCGATAC
1 AATGTATCGATACAATGAGAAATGTATCGATAC
2057610 AATGTA
1 AATGTA
2057616 AAATGTATCG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 31 0.89
34 2 0.06
35 2 0.06
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.31
Consensus pattern (33 bp):
AATGTATCGATACAATGAGAAATGTATCGATAC
Found at i:2057582 original size:13 final size:13
Alignment explanation
Indices: 2057564--2057615 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
2057554 TACATAGTAA
*
2057564 AATGTATTGATAC
1 AATGTATCGATAC
2057577 AATGTATCGATAC
1 AATGTATCGATAC
2057590 AATG-A--G---C
1 AATGTATCGATAC
2057597 AATGTATCGATAC
1 AATGTATCGATAC
2057610 AATGTA
1 AATGTA
2057616 AAATGTATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
7 5 0.16
8 1 0.03
10 2 0.06
12 1 0.03
13 23 0.72
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2057659 original size:29 final size:29
Alignment explanation
Indices: 2057617--2057757 Score: 138
Period size: 29 Copynumber: 5.5 Consensus size: 29
2057607 TACAATGTAA
2057617 AATGTATCGATACATCTGGGTAAACCCAG
1 AATGTATCGATACATCTGGGTAAACCCAG
*
2057646 AATGTATCGATACA-----ATAAA--C--
1 AATGTATCGATACATCTGGGTAAACCCAG
2057666 AATGTATCGATACATCTGGGTAAACCCAG
1 AATGTATCGATACATCTGGGTAAACCCAG
*
2057695 AATGTATCGATACA-----ATAAA--C--
1 AATGTATCGATACATCTGGGTAAACCCAG
2057715 AATGTATCGATACATCTGGGTAAACCCAG
1 AATGTATCGATACATCTGGGTAAACCCAG
2057744 AATGTATCGATACA
1 AATGTATCGATACA
2057758 ATAAACAATG
Statistics
Matches: 90, Mismatches: 4, Indels: 36
0.69 0.03 0.28
Matches are distributed among these distances:
20 28 0.31
22 2 0.02
24 8 0.09
25 8 0.09
27 2 0.02
29 42 0.47
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (29 bp):
AATGTATCGATACATCTGGGTAAACCCAG
Found at i:2057670 original size:49 final size:49
Alignment explanation
Indices: 2057597--2057777 Score: 337
Period size: 49 Copynumber: 3.7 Consensus size: 49
2057587 TACAATGAGC
*
2057597 AATGTATCGATACAATGTAA-AATGTATCGATACATCTGGGTAAACCCAG
1 AATGTATCGATACAAT-AAACAATGTATCGATACATCTGGGTAAACCCAG
2057646 AATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAACCCAG
1 AATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAACCCAG
2057695 AATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAACCCAG
1 AATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAACCCAG
2057744 AATGTATCGATACAATAAACAATGTATCGATACA
1 AATGTATCGATACAATAAACAATGTATCGATACA
2057778 AATTGTTAAA
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
48 2 0.02
49 128 0.98
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (49 bp):
AATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAACCCAG
Found at i:2057671 original size:20 final size:20
Alignment explanation
Indices: 2057646--2057778 Score: 86
Period size: 20 Copynumber: 5.8 Consensus size: 20
2057636 GTAAACCCAG
2057646 AATGTATCGATACAATAAAC
1 AATGTATCGATACAATAAAC
*
2057666 AATGTATCGATACATCTGGGTAAACCC
1 AATGTATCGATACA-----ATAAA--C
2057693 AGAATGTATCGATACAATAAAC
1 --AATGTATCGATACAATAAAC
*
2057715 AATGTATCGATACATCTGGGTAAACCC
1 AATGTATCGATACA-----ATAAA--C
2057742 AGAATGTATCGATACAATAAAC
1 --AATGTATCGATACAATAAAC
2057764 AATGTATCGATACAA
1 AATGTATCGATACAA
2057779 ATTGTTAAAA
Statistics
Matches: 91, Mismatches: 4, Indels: 36
0.69 0.03 0.27
Matches are distributed among these distances:
20 43 0.47
22 2 0.02
24 8 0.09
25 8 0.09
27 2 0.02
29 28 0.31
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAATAAAC
Found at i:2060820 original size:21 final size:21
Alignment explanation
Indices: 2060795--2060848 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
2060785 ATCATTGATA
* *
2060795 TATTACTATTTTAAATTTTC-T
1 TATTAATATTTTAAA-TATCAT
*
2060816 TATTAGTATTTTAAATATCAT
1 TATTAATATTTTAAATATCAT
2060837 TATTAATATTTT
1 TATTAATATTTT
2060849 CTTATTTTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTAATATTTTAAATATCAT
Found at i:2062878 original size:21 final size:21
Alignment explanation
Indices: 2062854--2062897 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
2062844 TTCTAATATA
2062854 AAATTATAAAAATG-CCCATTC
1 AAATTATAAAAATGACCC-TTC
2062875 AAATTATAAAAATGACCCTTC
1 AAATTATAAAAATGACCCTTC
2062896 AA
1 AA
2062898 CTCTCCCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27
Consensus pattern (21 bp):
AAATTATAAAAATGACCCTTC
Found at i:2063397 original size:20 final size:18
Alignment explanation
Indices: 2063369--2063426 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 18
2063359 TATTTTCCCC
2063369 TTTTTTTCCTCTCTCTTCT
1 TTTTTTTCCT-TCTCTTCT
*
2063388 TTTATTTTCCTT-TCAT-T
1 TTT-TTTTCCTTCTCTTCT
2063405 TTTTTTTCCTTTCATCTTCT
1 TTTTTTTCC-TTC-TCTTCT
2063425 TT
1 TT
2063427 CCTCTCAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 6 0.19
17 6 0.19
18 3 0.09
19 7 0.22
20 10 0.31
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTTCCTTCTCTTCT
Found at i:2063406 original size:16 final size:16
Alignment explanation
Indices: 2063387--2063419 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2063377 CTCTCTCTTC
2063387 TTTTATTTTCCTTTCA
1 TTTTATTTTCCTTTCA
*
2063403 TTTTTTTTTCCTTTCA
1 TTTTATTTTCCTTTCA
2063419 T
1 T
2063420 CTTCTTTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATTTTCCTTTCA
Found at i:2063608 original size:11 final size:10
Alignment explanation
Indices: 2063553--2063618 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
2063543 AAATTAAAAG
*
2063553 ATTTTCTATA
1 ATTTTTTATA
2063563 ATTTTTT-T-
1 ATTTTTTATA
* *
2063571 AGTTTTTAAA
1 ATTTTTTATA
*
2063581 ATTTTGTT-GA
1 ATTTT-TTATA
*
2063591 ATTTTATA-A
1 ATTTTTTATA
2063600 ATTTTTTATA
1 ATTTTTTATA
2063610 ATTTTTTAT
1 ATTTTTTAT
2063619 TTTTATAATG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
8 6 0.14
9 10 0.23
10 26 0.59
11 2 0.05
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:2063623 original size:16 final size:17
Alignment explanation
Indices: 2063602--2063650 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
2063592 TTTTATAAAT
2063602 TTTTTATAATTTTTT-A
1 TTTTTATAATTTTTTGA
2063618 TTTTTATAATGTTTTTGA
1 TTTTTATAAT-TTTTTGA
* *
2063636 ATTGTATAATTTTTT
1 TTTTTATAATTTTTT
2063651 TAATTTTCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 10 0.34
17 10 0.34
18 9 0.31
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
TTTTTATAATTTTTTGA
Found at i:2063632 original size:10 final size:9
Alignment explanation
Indices: 2063553--2063657 Score: 60
Period size: 9 Copynumber: 11.6 Consensus size: 9
2063543 AAATTAAAAG
2063553 ATTTTCTATA
1 ATTTT-TATA
*
2063563 ATTTTTTTA
1 ATTTTTATA
* *
2063572 GTTTTTAAA
1 ATTTTTATA
2063581 ATTTTGT-TGA
1 ATTTT-TAT-A
2063591 A-TTTTATAA
1 ATTTTTAT-A
2063600 ATTTTTTATA
1 A-TTTTTATA
2063610 ATTTTT-T-
1 ATTTTTATA
2063617 ATTTTTATA
1 ATTTTTATA
2063626 ATGTTTT-TGA
1 AT-TTTTAT-A
*
2063636 A-TTGTATA
1 ATTTTTATA
*
2063644 ATTTTTTTA
1 ATTTTTATA
2063653 ATTTT
1 ATTTT
2063658 CTGATTTTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
7 6 0.08
8 8 0.11
9 38 0.51
10 16 0.22
11 6 0.08
ACGTcount: A:0.28, C:0.01, G:0.06, T:0.66
Consensus pattern (9 bp):
ATTTTTATA
Found at i:2063632 original size:18 final size:17
Alignment explanation
Indices: 2063602--2063668 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 17
2063592 TTTTATAAAT
2063602 TTTTTATAA-TTTTTTA
1 TTTTTATAATTTTTTTA
*
2063618 TTTTTATAATGTTTTTGA
1 TTTTTATAAT-TTTTTTA
* *
2063636 ATTGTATAATTTTTTTA
1 TTTTTATAATTTTTTTA
* * *
2063653 ATTTTCTGATTTTTTT
1 TTTTTATAATTTTTTT
2063669 GAAAAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
16 9 0.21
17 19 0.45
18 14 0.33
ACGTcount: A:0.22, C:0.01, G:0.06, T:0.70
Consensus pattern (17 bp):
TTTTTATAATTTTTTTA
Found at i:2063636 original size:45 final size:44
Alignment explanation
Indices: 2063553--2063666 Score: 133
Period size: 45 Copynumber: 2.5 Consensus size: 44
2063543 AAATTAAAAG
* *
2063553 ATTTTCTATAATTTTTTTAGTTTTTAAAATTTTGTTGAATTTTATAA
1 ATTTTTTATAA-TTTTTTA-TTTTTAAAATTTTGTTGAATTGTAT-A
*
2063600 ATTTTTTATAATTTTTTATTTTTATAATGTTT-TTGAATTGTATA
1 ATTTTTTATAATTTTTTATTTTTAAAAT-TTTGTTGAATTGTATA
*
2063644 ATTTTTT-TAATTTTCTGATTTTT
1 ATTTTTTATAATTTT-TTATTTTT
2063667 TTGAAAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
43 7 0.11
44 15 0.25
45 19 0.31
46 10 0.16
47 10 0.16
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (44 bp):
ATTTTTTATAATTTTTTATTTTTAAAATTTTGTTGAATTGTATA
Found at i:2063668 original size:35 final size:34
Alignment explanation
Indices: 2063606--2063671 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 34
2063596 ATAAATTTTT
*
2063606 TATAATTTTTTATTTTTATAATGTTTTTGAATTG
1 TATAATTTTTTAATTTTATAATGTTTTTGAATTG
* * *
2063640 TATAATTTTTTTAATTTTCTGATTTTTTTGAA
1 TATAA-TTTTTTAATTTTATAATGTTTTTGAA
2063672 AAAAAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 5 0.19
35 22 0.81
ACGTcount: A:0.26, C:0.02, G:0.08, T:0.65
Consensus pattern (34 bp):
TATAATTTTTTAATTTTATAATGTTTTTGAATTG
Found at i:2065062 original size:17 final size:16
Alignment explanation
Indices: 2065040--2065082 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
2065030 CTTTTTTTTC
2065040 ATTAAAAAAAGTAACAA
1 ATTAAAAAAAGTAA-AA
2065057 ATTAAAAAAA-TAAAA
1 ATTAAAAAAAGTAAAA
*
2065072 A-TAAAAGAAGT
1 ATTAAAAAAAGT
2065083 CCCAAGGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 7 0.29
15 4 0.17
16 3 0.12
17 10 0.42
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (16 bp):
ATTAAAAAAAGTAAAA
Found at i:2066902 original size:31 final size:26
Alignment explanation
Indices: 2066848--2066907 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 26
2066838 TTATTTATAT
2066848 ATTTTTAATAATATTTAAAATTTTAA
1 ATTTTTAATAATATTTAAAATTTTAA
2066874 ATTTTTATATATACTATTTATATAATTTTAA
1 ATTTTTA-ATA-A-TATTTA-A-AATTTTAA
2066905 ATT
1 ATT
2066908 ATTTTAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 7 0.24
27 3 0.10
28 1 0.03
29 6 0.21
30 1 0.03
31 11 0.38
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (26 bp):
ATTTTTAATAATATTTAAAATTTTAA
Found at i:2066936 original size:20 final size:20
Alignment explanation
Indices: 2066913--2066951 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
2066903 AAATTATTTT
2066913 AATTAATTA-ATTAATATATA
1 AATTAATTATATT-ATATATA
*
2066933 AATTTATTATATTATATAT
1 AATTAATTATATTATATAT
2066952 TAAAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTAATTATATTATATATA
Found at i:2067039 original size:22 final size:19
Alignment explanation
Indices: 2066984--2067028 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
2066974 TTTAAATAAG
*
2066984 AAAATTAATAAAATGAAAAA
1 AAAATTAA-AAAAAGAAAAA
*
2067004 AATATTAAAAAAAGAAAAA
1 AAAATTAAAAAAAGAAAAA
2067023 AAAATT
1 AAAATT
2067029 GATAAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (19 bp):
AAAATTAAAAAAAGAAAAA
Found at i:2067422 original size:2 final size:2
Alignment explanation
Indices: 2067417--2067474 Score: 98
Period size: 2 Copynumber: 29.0 Consensus size: 2
2067407 CTTGTGTGTG
*
2067417 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
2067459 TA TA TA TA CA TA TA TA
1 TA TA TA TA TA TA TA TA
2067475 ATTCACACAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:2067666 original size:23 final size:22
Alignment explanation
Indices: 2067640--2067689 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
2067630 ACATTCTCAA
* *
2067640 TAAATTTAATGATATCATCTTTT
1 TAAATTAAATGATAT-ATATTTT
*
2067663 TAAAATTAAATTATATATATTTT
1 T-AAATTAAATGATATATATTTT
2067686 TAAA
1 TAAA
2067690 ATTTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 3 0.13
23 8 0.35
24 12 0.52
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAATTAAATGATATATATTTT
Found at i:2067690 original size:23 final size:24
Alignment explanation
Indices: 2067641--2067692 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
2067631 CATTCTCAAT
* *
2067641 AAATTTAATGATATCATCTTTTTA
1 AAATTAAATGATATCATATTTTTA
*
2067665 AAATTAAATTATAT-ATATTTTTA
1 AAATTAAATGATATCATATTTTTA
2067688 AAATT
1 AAATT
2067693 TTAATAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (24 bp):
AAATTAAATGATATCATATTTTTA
Found at i:2070977 original size:20 final size:20
Alignment explanation
Indices: 2070918--2070979 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
2070908 TTGATTATAA
*
2070918 TTATATGAGTTTAAATTTTAT
1 TTATATAAGTTTAAA-TTTAT
** **
2070939 AAGATATAA-TTTATTTTTAT
1 -TTATATAAGTTTAAATTTAT
2070959 TTATATAAGTTTAAATTTAT
1 TTATATAAGTTTAAATTTAT
2070979 T
1 T
2070980 GTTTGGTTTG
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 6 0.20
20 15 0.50
21 4 0.13
22 5 0.17
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.56
Consensus pattern (20 bp):
TTATATAAGTTTAAATTTAT
Found at i:2071108 original size:73 final size:74
Alignment explanation
Indices: 2070917--2071110 Score: 286
Period size: 73 Copynumber: 2.6 Consensus size: 74
2070907 TTTGATTATA
* * * * * *
2070917 ATTATATGAGTTTAAATT-TTATAAGATATAATTTATTTTTATTTATATAAGTTTAAATTTATTG
1 ATTATAGGAGTTTAAATTATTTTAAAATATGATTTATTTTTATTTGTAGAAGTTTAAATTTATTG
*
2070981 TTTGGTTTG
66 TTTAGTTTG
2070990 ATTATAGGAGTTTAAATTATTTTAAAATATGATTTATTTTTATTTGTAGAAGTTTAAATTTATT-
1 ATTATAGGAGTTTAAATTATTTTAAAATATGATTTATTTTTATTTGTAGAAGTTTAAATTTATTG
2071054 TTTAAG-TTG
66 TTT-AGTTTG
*
2071063 ATTATAGGAGTATAAATTATTTTAAAATATGATTTATTTTTATTTGTA
1 ATTATAGGAGTTTAAATTATTTTAAAATATGATTTATTTTTATTTGTA
2071111 AAATTAATTT
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
73 70 0.63
74 41 0.37
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (74 bp):
ATTATAGGAGTTTAAATTATTTTAAAATATGATTTATTTTTATTTGTAGAAGTTTAAATTTATTG
TTTAGTTTG
Found at i:2071120 original size:23 final size:24
Alignment explanation
Indices: 2071079--2071127 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
2071069 GGAGTATAAA
*
2071079 TTATTTTAAAATATGATTT-ATTT
1 TTATTTTAAAATATAATTTAATTT
2071102 TTATTTGTAAAAT-TAATTTAATTT
1 TTATTT-TAAAATATAATTTAATTT
2071126 TT
1 TT
2071128 GAGATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
TTATTTTAAAATATAATTTAATTT
Found at i:2071396 original size:68 final size:68
Alignment explanation
Indices: 2071249--2071409 Score: 164
Period size: 68 Copynumber: 2.3 Consensus size: 68
2071239 TTTATAGGTA
* * *
2071249 TAATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTTATTTATAGAAGTTTAAATTAATAT
1 TAATTATAGGAGCTTAAATTTTAAAGG---AA-TTATTTTTATTTATAGAAGTTTAAATTAATAT
*
2071314 TTTGGCT
62 TTTAGCT
* * * *
2071321 TAATTATAGGAGCTTCAATTTTAAAGGAATTATTTTT-TTTGTAGAAGTTTAAATTTATTTTTTT
1 TAATTATAGGAGCTTAAATTTTAAAGGAATTATTTTTATTTATAGAAGTTTAAA-TTAATATTTT
2071385 AG-T
65 AGCT
* *
2071388 ATGATTATAGGAGTTTAAATTT
1 -TAATTATAGGAGCTTAAATTT
2071410 ATTTTTTTAG
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
67 16 0.21
68 35 0.46
69 2 0.03
72 23 0.30
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.52
Consensus pattern (68 bp):
TAATTATAGGAGCTTAAATTTTAAAGGAATTATTTTTATTTATAGAAGTTTAAATTAATATTTTA
GCT
Found at i:2071403 original size:33 final size:33
Alignment explanation
Indices: 2071366--2071442 Score: 154
Period size: 33 Copynumber: 2.3 Consensus size: 33
2071356 TTTTTGTAGA
2071366 AGTTTAAATTTATTTTTTTAGTATGATTATAGG
1 AGTTTAAATTTATTTTTTTAGTATGATTATAGG
2071399 AGTTTAAATTTATTTTTTTAGTATGATTATAGG
1 AGTTTAAATTTATTTTTTTAGTATGATTATAGG
2071432 AGTTTAAATTT
1 AGTTTAAATTT
2071443 TTTAAGGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (33 bp):
AGTTTAAATTTATTTTTTTAGTATGATTATAGG
Found at i:2071443 original size:101 final size:103
Alignment explanation
Indices: 2071323--2071519 Score: 233
Period size: 105 Copynumber: 1.9 Consensus size: 103
2071313 TTTTGGCTTA
* * * *
2071323 ATTATAGGAGCTTCAA-TTTTAAAGG-A-A-TTATTTTT-TTTGTAGAAGTTTAAATTTATTTTT
1 ATTATAGGAGCTTAAATTTTTAAAGGTAGATTTATTTTTATTTGTAAAAATTTAAATTTA-ATTT
**
2071383 TTAGTATGATTATAGGAGTTTAAATTTATTTTTTTAGTATG
65 TT-GTATGATTATACAAGTTTAAATTT-TTTTTTTAGTATG
* *
2071424 ATTATAGGAGTTTAAATTTTTTAAGGTATGATTTATTTTTATTTGTAAAAATTTAAATTTAATTT
1 ATTATAGGAGCTTAAATTTTTAAAGGTA-GATTTATTTTTATTTGTAAAAATTTAAATTTAATTT
* *
2071489 TTGTTTGATTTTACAAGTTTAAATTTTTTTT
65 TTGTATGATTATACAAGTTTAAATTTTTTTT
2071520 AAGATATGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
101 14 0.17
102 8 0.10
103 1 0.01
104 5 0.06
105 21 0.26
106 13 0.16
107 18 0.22
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.55
Consensus pattern (103 bp):
ATTATAGGAGCTTAAATTTTTAAAGGTAGATTTATTTTTATTTGTAAAAATTTAAATTTAATTTT
TGTATGATTATACAAGTTTAAATTTTTTTTTTAGTATG
Found at i:2071546 original size:73 final size:72
Alignment explanation
Indices: 2071432--2071615 Score: 257
Period size: 73 Copynumber: 2.6 Consensus size: 72
2071422 TGATTATAGG
* *
2071432 AGTTTAAATTTTTTAAGGTATGATTTATTTTTATTTGTAAAAATTTAAATTTAATTTTT-GTTTG
1 AGTTTAAATTTTTTAAGATATGATTTATTTTTATTTGTAAAAATTTAAATTT-ATTTTTGGGTTG
2071496 ATTTTACA
65 ATTTTACA
*
2071504 AGTTTAAATTTTTTTTAAGATATGATTTA-TTTTATTTGTAAAATTTTAAATTTATTTTTGGGTT
1 AGTTTAAA--TTTTTTAAGATATGATTTATTTTTATTTGTAAAAATTTAAATTTATTTTTGGGTT
**
2071568 GATTTTAGG
64 GATTTTACA
* *
2071577 AG-TTAAAATTTTTAAGATAGGATTTATTTTTATTTGTAA
1 AGTTTAAATTTTTTAAGATATGATTTATTTTTATTTGTAA
2071616 TTAGTTTAAT
Statistics
Matches: 101, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
70 17 0.17
71 12 0.12
72 19 0.19
73 35 0.35
74 18 0.18
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.56
Consensus pattern (72 bp):
AGTTTAAATTTTTTAAGATATGATTTATTTTTATTTGTAAAAATTTAAATTTATTTTTGGGTTGA
TTTTACA
Found at i:2071829 original size:70 final size:70
Alignment explanation
Indices: 2071750--2072042 Score: 246
Period size: 73 Copynumber: 4.2 Consensus size: 70
2071740 TTTTTTGGGG
* *
2071750 TATACGAGTTTAAATTTTTAAATTATAATT-TTTCTATTTGTAAAAGTTTAAATTTTTATTTTGG
1 TATAGGAGTTTAAATTTTTAAATTATAATTATTTTTATTTGTAAAAGTTTAAATTTTT-TTTTGG
2071814 TTTGAT
65 TTTGAT
* * * *
2071820 TATTGGAGTTTAAA--TTT---TTA-AAGTATTTTT-TTTGTACAAGTTT-AA-TTTTTTTGGGT
1 TATAGGAGTTTAAATTTTTAAATTATAATTATTTTTATTTGTAAAAGTTTAAATTTTTTTTTGGT
* *
2071876 ATAAT
66 TTGAT
* * * * *
2071881 TATAAGAGTTTAAATTTTTAAGATAATGATTGATTTTTATTTATAGAAGTTTAAATTTATTTTTT
1 TATAGGAGTTTAAATTTTTAA-ATTATAATT-ATTTTTATTTGTAAAAGTTTAAATTT-TTTTTT
*
2071946 AGTTTGAT
63 GGTTTGAT
** * * * *
2071954 TATACAAGTTTAAATTTTTATAAGATATGATTTATTTTTATTCGTAAAAGTTTAAATTTATTTTT
1 TATAGGAGTTTAAATTTTTA-AA-TTAT-AATTATTTTTATTTGTAAAAGTTTAAATTTTTTTTT
*
2072019 GGGTTGAT
63 GGTTTGAT
* *
2072027 TATTGGAGTTAAAATT
1 TATAGGAGTTTAAATT
2072043 CTTGTTAGGT
Statistics
Matches: 172, Mismatches: 35, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
61 21 0.12
62 4 0.02
63 5 0.03
64 15 0.09
65 7 0.04
67 2 0.01
68 5 0.03
69 6 0.03
70 23 0.13
71 2 0.01
72 2 0.01
73 52 0.30
74 26 0.15
75 2 0.01
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.54
Consensus pattern (70 bp):
TATAGGAGTTTAAATTTTTAAATTATAATTATTTTTATTTGTAAAAGTTTAAATTTTTTTTTGGT
TTGAT
Found at i:2071964 original size:73 final size:74
Alignment explanation
Indices: 2071879--2072073 Score: 209
Period size: 73 Copynumber: 2.7 Consensus size: 74
2071869 TTTGGGTATA
* *
2071879 ATTATAAGAGTTTAAA-TTTT-TAAGATAATGATTGATTTTTATTTATAGAAGTTTAAATTTATT
1 ATTATAAGAGTTTAAATTTTTATAAGAT-ATGATTGATTTTTATTCATAAAAGTTTAAATTTATT
2071942 TTTTAGTTTG
65 TTTTAGTTTG
* *
2071952 ATTATACA-AGTTTAAATTTTTATAAGATATGATTTATTTTTATTCGTAAAAGTTTAAATTTA-T
1 ATTATA-AGAGTTTAAATTTTTATAAGATATGATTGATTTTTATTCATAAAAGTTTAAATTTATT
* *
2072015 TTTTGGGTTG
65 TTTTAGTTTG
** * * * * * * *
2072025 ATTATTGGAGTTAAAATTCTTGTTAGGTATGATTTATTTTTATTTATAA
1 ATTATAAGAGTTTAAATTTTTATAAGATATGATTGATTTTTATTCATAA
2072074 GATTAATTTG
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
73 62 0.60
74 35 0.34
75 6 0.06
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.53
Consensus pattern (74 bp):
ATTATAAGAGTTTAAATTTTTATAAGATATGATTGATTTTTATTCATAAAAGTTTAAATTTATTT
TTTAGTTTG
Found at i:2072300 original size:69 final size:68
Alignment explanation
Indices: 2072231--2072467 Score: 262
Period size: 73 Copynumber: 3.4 Consensus size: 68
2072221 GAGTTAAAAT
* * * * *
2072231 TTTTTAAGTTAAAATTTATTTTTATATATAGAAATTTAATTTTTTTA-TTTGATTATACAAATTT
1 TTTTTAAGATATAATTTATTTTTATTTATAGAAGTTTAATTTTTTTAGTTTGATTATATAAATTT
2072295 AAA
66 AAA
* *
2072298 ATTTTAAGATATTATTTATTTTTATTTATAGAAGTTTAGATTTATTTTTTGAGTTTGATTATATA
1 TTTTTAAGATATAATTTATTTTTATTTATAGAAGTTTA-A--T-TTTTTT-AGTTTGATTATATA
*
2072363 AGTTTAAA
61 AATTTAAA
* * * *
2072371 TTTTTAAGGTATAATTTATTTTTATTTGTAGATGTTTAAATTTTTTTAGTTTGATTATATGAATT
1 TTTTTAAGATATAATTTATTTTTATTTATAGAAGTTT-AATTTTTTTAGTTTGATTATATAAATT
2072436 TAAA
65 TAAA
**
2072440 TTTTTTAA-AGTATGCTTTATTTTTATTT
1 -TTTTTAAGA-TATAATTTATTTTTATTT
2072468 GTAAAAATTT
Statistics
Matches: 143, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
67 32 0.22
68 1 0.01
69 20 0.14
70 30 0.21
71 7 0.05
72 1 0.01
73 51 0.36
74 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.09, T:0.58
Consensus pattern (68 bp):
TTTTTAAGATATAATTTATTTTTATTTATAGAAGTTTAATTTTTTTAGTTTGATTATATAAATTT
AAA
Found at i:2072302 original size:27 final size:26
Alignment explanation
Indices: 2072239--2072302 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
2072229 ATTTTTTAAG
*
2072239 TTAAAATTTATTTTTATATATAGAAAT
1 TTAAAATTT-TTTTTATATATACAAAT
**
2072266 TTAATTTTTTTATTTGAT-TATACAAAT
1 TTAAAATTTTT-TTT-ATATATACAAAT
2072293 TTAAAATTTT
1 TTAAAATTTT
2072303 AAGATATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.07
27 26 0.87
28 2 0.07
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (26 bp):
TTAAAATTTTTTTTATATATACAAAT
Found at i:2072501 original size:142 final size:141
Alignment explanation
Indices: 2072221--2072571 Score: 352
Period size: 143 Copynumber: 2.5 Consensus size: 141
2072211 ATTATTGTAT
* * *
2072221 GAGTTAAAATTTTTTAAGTTAAAATTTATTTTTATATATAGAAATTTAATTTTTTTATTTGATTA
1 GAGTTAAAATTTTTTAAGATATAATTTATTTTTATTTATAGAAATTTAATTTTTTTATTTGATTA
* * * * * *
2072286 TACAAATTTAAAATTTTAAGATATTATTTATTTTTATTTATAGAAGTTTAGATTTATTTTTTGAG
66 TACAAATTTAAAATTTTAAGATATGATTTATTTTTATTTATAAAAATTTAAATTGATTTTTTGAA
* *
2072351 TTTGATTATATA
131 ATTAATTATA-A
* * * **
2072363 -AGTTTAAA-TTTTTAAGGTATAATTTATTTTTATTTGTAGATGTTTAAATTTTTTTAGTTTGAT
1 GAGTTAAAATTTTTTAAGATATAATTTATTTTTATTTATAGAAATTT-AATTTTTTTA-TTTGAT
** * * *
2072426 TATATGAATTTAAATTTTTTAA-AGTATGCTTTATTTTTATTTGTAAAAATTTAAATTGATTTTT
64 TATACAAATTTAAA-ATTTTAAGA-TATGATTTATTTTTATTTATAAAAATTTAAATTGATTTTT
2072490 T-AAATTAATTATAA
127 TGAAATTAATTATAA
* * * *
2072504 GAGATAAAATTTTTTTAAAATATAATTTATTTTTTATTTATAAGATTAGTTTAATTTTTAT-TTT
1 GAGTTAAAA-TTTTTTAAGATATAATTTA-TTTTTATTTAT-AGA--AATTTAATTTTTTTATTT
2072568 GATT
61 GATT
2072572 GCGTAAGTAT
Statistics
Matches: 171, Mismatches: 27, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
140 31 0.18
141 18 0.11
142 34 0.20
143 40 0.23
144 16 0.09
145 17 0.10
146 3 0.02
147 8 0.05
148 4 0.02
ACGTcount: A:0.35, C:0.01, G:0.09, T:0.56
Consensus pattern (141 bp):
GAGTTAAAATTTTTTAAGATATAATTTATTTTTATTTATAGAAATTTAATTTTTTTATTTGATTA
TACAAATTTAAAATTTTAAGATATGATTTATTTTTATTTATAAAAATTTAAATTGATTTTTTGAA
ATTAATTATAA
Found at i:2076096 original size:22 final size:22
Alignment explanation
Indices: 2076066--2076115 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
2076056 GTAATGTTTT
*
2076066 TAATTTAAAT-TTAATTATAAAA
1 TAATATAAATATTAA-TATAAAA
*
2076088 TTATATAAATATTAATATAAAA
1 TAATATAAATATTAATATAAAA
2076110 TAATAT
1 TAATAT
2076116 TTTAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATATAAATATTAATATAAAA
Found at i:2076122 original size:18 final size:18
Alignment explanation
Indices: 2076099--2076133 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2076089 TATATAAATA
2076099 TTAATATAAAATAATATT
1 TTAATATAAAATAATATT
**
2076117 TTAATATTTAATAATAT
1 TTAATATAAAATAATAT
2076134 AATAAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAATATAAAATAATATT
Found at i:2077066 original size:20 final size:20
Alignment explanation
Indices: 2077043--2077108 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
2077033 TAACTTTTAT
*
2077043 AATTAATTTTTAAAAAATTA
1 AATTAATTTTAAAAAAATTA
* *
2077063 AATT-ATTATAAATAAAAATA
1 AATTAATTTTAAA-AAAATTA
*
2077083 AATTATATATTAAAAAAATTTA
1 AATTA-ATTTTAAAAAAA-TTA
2077105 AATT
1 AATT
2077109 CTTATAATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 6 0.17
20 14 0.39
21 4 0.11
22 12 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTAATTTTAAAAAAATTA
Found at i:2077151 original size:74 final size:71
Alignment explanation
Indices: 2077060--2077304 Score: 275
Period size: 74 Copynumber: 3.4 Consensus size: 71
2077050 TTTTAAAAAA
* * *
2077060 TTAAATTATTATAAATAAAAATAAATTATATATTAAAAAAATTTAAATTCTTATAATTAAGTCAA
1 TTAAATTTTTATAAATAAAAATAAATTATATATT-AAAAAATTTAAACTCTTATAATTAA--CCA
2077125 AAAATAAAT
63 AAAATAAAT
* * *
2077134 TTAAATTTTTATAAATAAAAATAAATTATATTTTAAAAAATATAAACTCTTATAATTATACCCTA
1 TTAAATTTTTATAAATAAAAATAAATTATATATTAAAAAATTTAAACTCTTATAATTA-A-CCAA
2077199 AAATCAAAT
64 AAAT-AAAT
* *
2077208 TTAAACTTTTATAAA-AAATAA-AAA--ATATATT-AAAAATTTAAACTCCTATAATTGAACCAA
1 TTAAATTTTTATAAATAAA-AATAAATTATATATTAAAAAATTTAAACTCTTATAATT-AACCAA
* *
2077268 ATACAAAT
64 AAATAAAT
* *
2077276 TGAAATTTTTACAAATAAAAATAAATTAT
1 TTAAATTTTTATAAATAAAAATAAATTAT
2077305 TCTTTAAAAA
Statistics
Matches: 146, Mismatches: 17, Indels: 19
0.80 0.09 0.10
Matches are distributed among these distances:
68 18 0.12
69 11 0.08
70 21 0.14
71 9 0.06
73 34 0.23
74 53 0.36
ACGTcount: A:0.56, C:0.07, G:0.01, T:0.37
Consensus pattern (71 bp):
TTAAATTTTTATAAATAAAAATAAATTATATATTAAAAAATTTAAACTCTTATAATTAACCAAAA
ATAAAT
Done.