Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold202
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2706578
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 7 of 16
Found at i:1121944 original size:13 final size:13
Alignment explanation
Indices: 1121926--1121963 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1121916 ATAATCCCCC
*
1121926 TGTATCGATACAG
1 TGTATCGATACAA
1121939 TGTATCGATACAA
1 TGTATCGATACAA
1121952 TGTATCGATACA
1 TGTATCGATACA
1121964 CAAAAACATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1124004 original size:15 final size:15
Alignment explanation
Indices: 1123984--1124024 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
1123974 GTTCATCAAA
1123984 TTCATTTGGAGCTTC
1 TTCATTTGGAGCTTC
*
1123999 TTCATTTTGAGCTTC
1 TTCATTTGGAGCTTC
*
1124014 CTCAATTTGGA
1 TTC-ATTTGGA
1124025 CACTTTTGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (15 bp):
TTCATTTGGAGCTTC
Found at i:1129392 original size:21 final size:20
Alignment explanation
Indices: 1129366--1129441 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
1129356 TTCTACAATT
*
1129366 TGTATCGTTACAAATGGTAAA
1 TGTATCGATACAAAT-GTAAA
* *
1129387 TGTATCGATACATATGTGAA
1 TGTATCGATACAAATGTAAA
*
1129407 TGTATTGATAC--ATGCCTAAAA
1 TGTATCGATACAAATG--T-AAA
1129428 TGTATCGATACAAA
1 TGTATCGATACAAA
1129442 ACCACCCTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
18 3 0.07
20 15 0.34
21 25 0.57
23 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (20 bp):
TGTATCGATACAAATGTAAA
Found at i:1129410 original size:20 final size:21
Alignment explanation
Indices: 1129366--1129419 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1129356 TTCTACAATT
* *
1129366 TGTATCGTTACAAATGGTAAA
1 TGTATCGATACATATGGTAAA
*
1129387 TGTATCGATACATAT-GTGAA
1 TGTATCGATACATATGGTAAA
*
1129407 TGTATTGATACAT
1 TGTATCGATACAT
1129420 GCCTAAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (21 bp):
TGTATCGATACATATGGTAAA
Found at i:1137757 original size:23 final size:23
Alignment explanation
Indices: 1137726--1137771 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1137716 AGGCCTAATA
*
1137726 AATAGACATATAAAGGTTGGTCT
1 AATAAACATATAAAGGTTGGTCT
1137749 AATAAACATATAAAGGTTGGTCT
1 AATAAACATATAAAGGTTGGTCT
1137772 TCTTGTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (23 bp):
AATAAACATATAAAGGTTGGTCT
Found at i:1148031 original size:15 final size:16
Alignment explanation
Indices: 1148003--1148035 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1147993 TATCTTTGTA
1148003 TGTTAGGTGCGTTAGG
1 TGTTAGGTGCGTTAGG
*
1148019 TGTT-GGTGTGTTAGG
1 TGTTAGGTGCGTTAGG
1148034 TG
1 TG
1148036 AGAATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.09, C:0.03, G:0.45, T:0.42
Consensus pattern (16 bp):
TGTTAGGTGCGTTAGG
Found at i:1148069 original size:32 final size:32
Alignment explanation
Indices: 1148026--1148092 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
1148016 AGGTGTTGGT
*
1148026 GTGTTAGGTGAGAATATTAGGTGGTGTGTTAG
1 GTGTTAGGTGAGAATAATAGGTGGTGTGTTAG
*
1148058 GTGTTATGTGAGAATAATAGGTGGTGTGTTAG
1 GTGTTAGGTGAGAATAATAGGTGGTGTGTTAG
1148090 GTG
1 GTG
1148093 AGCAATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.00, G:0.40, T:0.37
Consensus pattern (32 bp):
GTGTTAGGTGAGAATAATAGGTGGTGTGTTAG
Found at i:1149373 original size:41 final size:42
Alignment explanation
Indices: 1149283--1149373 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 42
1149273 TAATTTTTCA
* * * *
1149283 AGCTGTTT-ACCAGATTAGCTTCTGTGGTAAATGGAGTCTGG
1 AGCTTTTTAACCAGATTAGATTCTGAGGTAAATAGAGTCTGG
* * *
1149324 ACCATTTTAACCAGATTAGATTCT-AGGTAAATAGAGTCTTG
1 AGCTTTTTAACCAGATTAGATTCTGAGGTAAATAGAGTCTGG
1149365 AGCTTTTTA
1 AGCTTTTTA
1149374 TATGTCTAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
41 26 0.65
42 14 0.35
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
AGCTTTTTAACCAGATTAGATTCTGAGGTAAATAGAGTCTGG
Found at i:1150521 original size:17 final size:17
Alignment explanation
Indices: 1150499--1150531 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
1150489 TGTTGTTAAA
1150499 ATTATAAACATAATAAT
1 ATTATAAACATAATAAT
1150516 ATTATAAACATAATAA
1 ATTATAAACATAATAA
1150532 GGTGGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
ATTATAAACATAATAAT
Found at i:1153248 original size:67 final size:66
Alignment explanation
Indices: 1153129--1153263 Score: 200
Period size: 67 Copynumber: 2.0 Consensus size: 66
1153119 CGTATGAAGA
*
1153129 AACTTAGAAAATTTTGCAACTTCCTGCCTTGGATACTAACATCGGATCCTACCATTATCTGGGTG
1 AACTTAGAAAATTTT-CAACTTCCTGCCTTGGATACTAACATCGGATACTACCATTATCTGGGTG
1153194 AC
65 AC
** *
1153196 AACTTAGAAAAAATTTT-AACTTCCTGCCTTGGATACTAATGTTGGATACTACCATTATCTGGGT
1 AACTTAG--AAAATTTTCAACTTCCTGCCTTGGATACTAACATCGGATACTACCATTATCTGGGT
1153260 GAC
64 GAC
1153263 A
1 A
1153264 TAGGATATGG
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
67 54 0.87
69 8 0.13
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (66 bp):
AACTTAGAAAATTTTCAACTTCCTGCCTTGGATACTAACATCGGATACTACCATTATCTGGGTGA
C
Found at i:1154374 original size:20 final size:19
Alignment explanation
Indices: 1154337--1154375 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
1154327 GGTTCTTTGC
**
1154337 TTTTGCCCTTTTTTTTTTT
1 TTTTGCCCTTTTAATTTTT
1154356 TTTTGGCCCTTTTAATTTTT
1 TTTT-GCCCTTTTAATTTTT
1154376 AATTTTGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.05, C:0.15, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTGCCCTTTTAATTTTT
Found at i:1154784 original size:21 final size:21
Alignment explanation
Indices: 1154755--1154804 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
1154745 CGGTAATCTA
* *
1154755 TTGACGTGACTTTTGATCATG
1 TTGATGTGACTTTTAATCATG
* * *
1154776 TTGATGTGATTTTTAATCGTT
1 TTGATGTGACTTTTAATCATG
1154797 TTGATGTG
1 TTGATGTG
1154805 GTGCTTAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.50
Consensus pattern (21 bp):
TTGATGTGACTTTTAATCATG
Found at i:1158605 original size:2 final size:2
Alignment explanation
Indices: 1158598--1158624 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1158588 CTTTACCATT
1158598 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1158625 TAAATTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1158661 original size:7 final size:8
Alignment explanation
Indices: 1158644--1158678 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
1158634 ACTTTTTATT
*
1158644 AAAAAGAA
1 AAAAATAA
1158652 AAAAATAA
1 AAAAATAA
1158660 AAAAATAAA
1 AAAAAT-AA
1158669 AAAAATAA
1 AAAAATAA
1158677 AA
1 AA
1158679 TTGATAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.09
Consensus pattern (8 bp):
AAAAATAA
Found at i:1158662 original size:9 final size:9
Alignment explanation
Indices: 1158650--1158678 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
1158640 TATTAAAAAG
1158650 AAAAAAAT-
1 AAAAAAATA
1158658 AAAAAAATA
1 AAAAAAATA
1158667 AAAAAAATA
1 AAAAAAATA
1158676 AAA
1 AAA
1158679 TTGATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:1161967 original size:30 final size:30
Alignment explanation
Indices: 1161931--1161987 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
1161921 TCTGATTGCC
1161931 GTGATAACCCAAAAGTGTTGTTTATGGATG
1 GTGATAACCCAAAAGTGTTGTTTATGGATG
1161961 GTGATAACCCAAAAGTGTTGTTTATGG
1 GTGATAACCCAAAAGTGTTGTTTATGG
1161988 TTGGGCACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (30 bp):
GTGATAACCCAAAAGTGTTGTTTATGGATG
Found at i:1162335 original size:22 final size:22
Alignment explanation
Indices: 1162295--1162355 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
1162285 TTTTTTATAA
*
1162295 TTTATATATTTTAAAATTTAATC-
1 TTTAT-TAATTTAAAATTT-ATCT
* *
1162318 TTTATTAATTTAATATTTTTCT
1 TTTATTAATTTAAAATTTATCT
1162340 TTTATTAAGTTTAAAA
1 TTTATTAA-TTTAAAA
1162356 ATATAAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 19 0.59
23 11 0.34
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTATTAATTTAAAATTTATCT
Found at i:1165687 original size:19 final size:19
Alignment explanation
Indices: 1165659--1165696 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1165649 AATTATGTTA
1165659 TTTCTATTATTCAGTTTTG
1 TTTCTATTATTCAGTTTTG
*
1165678 TTTCTGTTATTCAGTTTTG
1 TTTCTATTATTCAGTTTTG
1165697 GGTTCAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.11, G:0.13, T:0.63
Consensus pattern (19 bp):
TTTCTATTATTCAGTTTTG
Found at i:1166391 original size:2 final size:2
Alignment explanation
Indices: 1166384--1166429 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
1166374 CTCTGATCCC
* *
1166384 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1166426 AT AT
1 AT AT
1166430 TCAAAGAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:1167166 original size:19 final size:19
Alignment explanation
Indices: 1167139--1167197 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
1167129 GAATGTAAAT
*
1167139 AAATAATTTATTATTTTAA
1 AAATTATTTATTATTTTAA
* *
1167158 AAATTATTTCA-AATTTTCA
1 AAATTATTT-ATTATTTTAA
1167177 AAATTA-TT-TTATTTATAA
1 AAATTATTTATTATTT-TAA
1167195 AAA
1 AAA
1167198 ATAAAAGGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 4 0.12
18 7 0.22
19 20 0.62
20 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTATTTATTATTTTAA
Found at i:1167468 original size:24 final size:26
Alignment explanation
Indices: 1167402--1167471 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 26
1167392 AAATATTTTT
1167402 ATAATTAATTATATTTT-TTAAAAATAA
1 ATAATTAATT-T-TTTTATTAAAAATAA
* *
1167429 ATTTATTAATCTTTTTATT-AAAAT-A
1 A-TAATTAATTTTTTTATTAAAAATAA
1167454 ATAATTAATTTTTTTATT
1 ATAATTAATTTTTTTATT
1167472 TCTTTAACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
24 15 0.41
25 2 0.05
26 9 0.24
27 4 0.11
28 7 0.19
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (26 bp):
ATAATTAATTTTTTTATTAAAAATAA
Found at i:1168226 original size:73 final size:73
Alignment explanation
Indices: 1168135--1168321 Score: 216
Period size: 73 Copynumber: 2.5 Consensus size: 73
1168125 ATTGTATGAG
* * * **
1168135 TTTAAATTTTGTAAGATATAATTTTTTTTATTTGTAAAAATTTAAATCTAT-TTTTTTATTTGAT
1 TTTAAATTTTTTTAGATATAATTTTTTTTATTTGTAAAAATTTAAATCCATCTTTTAGATTT-AT
1168199 TAT-ACGAA
65 TATAACGAA
* *
1168207 TTTAAATTTTTTTATGATATAATTATTTTTATTTGTAAAAATTTAAATCCGTCTTTTAGATTTAT
1 TTTAAATTTTTTTA-GATATAATTTTTTTTATTTGTAAAAATTTAAATCCATCTTTTAGATTTAT
* *
1168272 TATAAGGAG
65 TATAACGAA
* * *
1168281 TTTAAATTATTTTAAAGTATGATTTATTTTTATTTGTAAAA
1 TTTAAATTTTTTTAGA-TATAATTT-TTTTTATTTGTAAAA
1168322 TTAGTTTAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
72 12 0.12
73 40 0.41
74 30 0.31
75 15 0.15
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.55
Consensus pattern (73 bp):
TTTAAATTTTTTTAGATATAATTTTTTTTATTTGTAAAAATTTAAATCCATCTTTTAGATTTATT
ATAACGAA
Found at i:1168699 original size:73 final size:70
Alignment explanation
Indices: 1168487--1168732 Score: 235
Period size: 73 Copynumber: 3.4 Consensus size: 70
1168477 TTTAAAATAG
* * * * * ** *
1168487 TTTATTTGTAAAAATTTAAATTTGTATTTTGGTTCGATTATAAGAGCTTCAATTTTTAAGGCATT
1 TTTATTTGTAAAAGTTTAAATTTATTTTTTGGTTTGATTATAAGAGCTT-AATTTTTTAGATATG
*
1168552 ATTAAT
65 ATTATT
* * * *
1168558 TTT-TTTGTAAAAGTTTAAATTTATTTTTTGGGTATGATTATAAGAGTTTAAATTTTTTAAAGCA
1 TTTATTTGTAAAAGTTTAAATTTATTTTTT-GGTTTGATTATAAGAGCTT-AATTTTTTAGA-TA
1168622 TGATTCATT
63 TGATT-ATT
* * *
1168631 TTTATTTATAAAAGTTTAAATTTATTTTTTTGTTTGATTATATGAGCTTATATTTTTTACGATAT
1 TTTATTTGTAAAAGTTTAAATTTATTTTTTGGTTTGATTATAAGAGCTTA-ATTTTTTA-GATAT
1168696 GATTTATT
64 GA-TTATT
* *
1168704 TTTATTTGTTAAAA-TTTATATTTGTTTTT
1 TTTATTTG-TAAAAGTTTAAATTTATTTTT
1168733 GAGTTAATAA
Statistics
Matches: 145, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
70 23 0.16
71 27 0.19
72 7 0.05
73 55 0.38
74 33 0.23
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.55
Consensus pattern (70 bp):
TTTATTTGTAAAAGTTTAAATTTATTTTTTGGTTTGATTATAAGAGCTTAATTTTTTAGATATGA
TTATT
Found at i:1176934 original size:42 final size:42
Alignment explanation
Indices: 1176887--1177270 Score: 320
Period size: 42 Copynumber: 9.1 Consensus size: 42
1176877 GACCATATGA
* *
1176887 ACTTTCCTACACTCAGTCTGCCTGTCGTCTTTGACCTTGGAG
1 ACTTTCCTACACTAAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
1176929 ACTTTCCTACCCTTAGTCTGCCTATCGACTTTGACCTTGGAG
1 ACTTTCCTACACTAAGTCTGCCTGTCGGCTTTGACCTTGGAG
* *
1176971 AC-TACCT-CATCTAAAGTCTGCCTGTTGGCTTTGACCTTGGAG
1 ACTTTCCTACA-CT-AAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
1177013 ACTTTCCTACCCTCAA-TCTGCTTGTTGACTTTGACCCTAGAG
1 ACTTTCCTACACT-AAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * *
1177055 AC-TACCT-CATCTAAAGCCTACCTGTCGGCTTTGACCTTGGAG
1 ACTTTCCTACA-CT-AAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
1177097 AC-TGCCT-CATCTGAAGTCGGCCTGTTGGCTTTGACCTTGAAG
1 ACTTTCCTACA-CT-AAGTCTGCCTGTCGGCTTTGACCTTGGAG
* *
1177139 ACTTTCCTAC-CCACAGTCTGCCTGTCGGCTTTGACCTTAGAG
1 ACTTTCCTACACTA-AGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
1177181 ACTGTCGT-CTCTAAAGTCTGCTTGTCGGCTTTGA-CTCTGGAG
1 ACTTTCCTACACT-AAGTCTGCCTGTCGGCTTTGACCT-TGGAG
* * * *
1177223 ACTTTTCCTACCCTCAGTCTGCCTGTTGGCTTTGACCCTGGAG
1 AC-TTTCCTACACTAAGTCTGCCTGTCGGCTTTGACCTTGGAG
1177266 ACTTT
1 ACTTT
1177271 TTCACTTTTT
Statistics
Matches: 275, Mismatches: 52, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
40 2 0.01
41 18 0.07
42 207 0.75
43 42 0.15
44 6 0.02
ACGTcount: A:0.17, C:0.29, G:0.20, T:0.34
Consensus pattern (42 bp):
ACTTTCCTACACTAAGTCTGCCTGTCGGCTTTGACCTTGGAG
Found at i:1177114 original size:126 final size:125
Alignment explanation
Indices: 1176957--1177270 Score: 382
Period size: 126 Copynumber: 2.5 Consensus size: 125
1176947 TGCCTATCGA
1176957 CTTTGACCTTGGAGACTACCTCATCTAAAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTTCCTA
1 CTTTGACCTTGGAGACTACCTCATCT-AAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTTCCTA
* * *
1177022 CCCTCAATCTGCTTGTTGACTTTGACCCTAGAGACT-ACCTCATCTAAAGCCTACCTGTCGG
65 CCCACAATCTGCCTGTCGACTTTGACCCTAGAGACTGACCTC-TCTAAAGCCTACCTGTCGG
* * *
1177083 CTTTGACCTTGGAGACTGCCTCATCTGAAGTCGGCCTGTTGGCTTTGACCTTGAAGACTTTCCTA
1 CTTTGACCTTGGAGACTACCTCATCT-AAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTTCCTA
* * * * * * * *
1177148 CCCACAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGTCGTCTCTAAAGTCTGCTTGTCGG
65 CCCACAATCTGCCTGTCGACTTTGACCCTAGAGACTGACCTCTCTAAAGCCTACCTGTCGG
* * * *
1177209 CTTTGA-CTCTGGAGACTTTTCCT-ACCCTCAGTCTGCCTGTTGGCTTTGACCCTGGAGACTTT
1 CTTTGACCT-TGGAGAC--TACCTCA-TCTAAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTT
1177271 TTCACTTTTT
Statistics
Matches: 162, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
125 2 0.01
126 120 0.74
127 34 0.21
128 6 0.04
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (125 bp):
CTTTGACCTTGGAGACTACCTCATCTAAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTTCCTAC
CCACAATCTGCCTGTCGACTTTGACCCTAGAGACTGACCTCTCTAAAGCCTACCTGTCGG
Found at i:1177808 original size:3 final size:3
Alignment explanation
Indices: 1177800--1177826 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1177790 GGAACCGAAT
1177800 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1177827 ATGATCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1178922 original size:14 final size:14
Alignment explanation
Indices: 1178903--1178935 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1178893 GAGGAGAGGC
*
1178903 ATCGAGCTGTAAGG
1 ATCGAGCTATAAGG
1178917 ATCGAGCTATAAGG
1 ATCGAGCTATAAGG
1178931 ATCGA
1 ATCGA
1178936 ACAAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.21
Consensus pattern (14 bp):
ATCGAGCTATAAGG
Found at i:1178968 original size:22 final size:22
Alignment explanation
Indices: 1178943--1178992 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
1178933 CGAACAAAAA
*
1178943 AAGGTAGCAGCAACATAGAAGG
1 AAGGCAGCAGCAACATAGAAGG
* *
1178965 AAGGCAGCAGCAACGTAGGAGG
1 AAGGCAGCAGCAACATAGAAGG
1178987 AAGGCA
1 AAGGCA
1178993 TAGAGCTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.42, C:0.16, G:0.36, T:0.06
Consensus pattern (22 bp):
AAGGCAGCAGCAACATAGAAGG
Found at i:1181972 original size:13 final size:13
Alignment explanation
Indices: 1181954--1181978 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1181944 CATAAAGTGT
1181954 TGTATCGATACAA
1 TGTATCGATACAA
1181967 TGTATCGATACA
1 TGTATCGATACA
1181979 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1181976 original size:33 final size:33
Alignment explanation
Indices: 1181934--1182000 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1181924 TTCAACGATT
1181934 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1181967 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1182000 T
1 T
1182001 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1182059 original size:13 final size:13
Alignment explanation
Indices: 1182041--1182065 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1182031 ATCACTTAAA
1182041 TGTATCGATACAT
1 TGTATCGATACAT
1182054 TGTATCGATACA
1 TGTATCGATACA
1182066 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1182130 original size:52 final size:52
Alignment explanation
Indices: 1182074--1182202 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1182064 CACTGATCTT
*
1182074 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* **
1182126 TGTATCGATACATGCAGGCACATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1182178 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1182203 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1183074 original size:21 final size:21
Alignment explanation
Indices: 1183041--1183081 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1183031 TCATGTTAAC
1183041 AAGCCATGATTCATGCATTTT
1 AAGCCATGATTCATGCATTTT
* *
1183062 AAGCTATGCTTCATGCATTT
1 AAGCCATGATTCATGCATTT
1183082 ATGACATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (21 bp):
AAGCCATGATTCATGCATTTT
Found at i:1186339 original size:10 final size:10
Alignment explanation
Indices: 1186324--1186350 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1186314 TGCTAACTAA
1186324 GTTTTTGTTT
1 GTTTTTGTTT
1186334 GTTTTTGTTT
1 GTTTTTGTTT
1186344 GTTTTTG
1 GTTTTTG
1186351 CTTGATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (10 bp):
GTTTTTGTTT
Found at i:1196178 original size:52 final size:52
Alignment explanation
Indices: 1196108--1196228 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1196098 GAAAATTTAT
*
1196108 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
1196160 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1196212 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1196229 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1196241 original size:52 final size:51
Alignment explanation
Indices: 1196108--1196248 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
1196098 GAAAATTTAT
1196108 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
1196160 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
1196212 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1196249 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1196255 original size:13 final size:13
Alignment explanation
Indices: 1196237--1196261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1196227 CAAAGATCAG
1196237 TGTATCGATACAA
1 TGTATCGATACAA
1196250 TGTATCGATACA
1 TGTATCGATACA
1196262 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1196345 original size:13 final size:13
Alignment explanation
Indices: 1196327--1196351 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1196317 CAAAAAAATA
1196327 TGTATCGATACAT
1 TGTATCGATACAT
1196340 TGTATCGATACA
1 TGTATCGATACA
1196352 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1196351 original size:33 final size:33
Alignment explanation
Indices: 1196305--1196371 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1196295 AGTAGCTTAA
1196305 ATTGTATCAATACAAAAAAATATGTATCGATAC
1 ATTGTATCAATACAAAAAAATATGTATCGATAC
* * ***
1196338 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCAATACAAAAAAATATGTATCGATAC
1196371 A
1 A
1196372 GATCATTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.34
Consensus pattern (33 bp):
ATTGTATCAATACAAAAAAATATGTATCGATAC
Found at i:1196579 original size:10 final size:10
Alignment explanation
Indices: 1196564--1196590 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1196554 ACCATTTTCA
1196564 AAAATTGTCG
1 AAAATTGTCG
1196574 AAAATTGTCG
1 AAAATTGTCG
1196584 AAAATTG
1 AAAATTG
1196591 GCCCGGACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (10 bp):
AAAATTGTCG
Found at i:1197084 original size:1 final size:1
Alignment explanation
Indices: 1197078--1197183 Score: 86
Period size: 1 Copynumber: 106.0 Consensus size: 1
1197068 GGCGTCCTCC
* * ** ** * * *
1197078 AAAAAAAAAAAACAAAACAAAAAAAAACGAAAAAAATGAAAAAACAAAAAAAAACAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
1197143 AAAAACAAAAAAAAAACAAAAACAAACAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1197184 GGGGGTCCGG
Statistics
Matches: 79, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 79 1.00
ACGTcount: A:0.87, C:0.10, G:0.02, T:0.01
Consensus pattern (1 bp):
A
Found at i:1197110 original size:27 final size:27
Alignment explanation
Indices: 1197080--1197183 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
1197070 CGTCCTCCAA
1197080 AAAAAAAAAAC-AAAACAAAAAAAAAC
1 AAAAAAAAAACAAAAACAAAAAAAAAC
**
1197106 GAAAAAAATGA-AAAAACAAAAAAAAAC
1 -AAAAAAAAAACAAAAACAAAAAAAAAC
1197133 -AAAAAAAAACAAAAACAAAAAAAAA-
1 AAAAAAAAAACAAAAACAAAAAAAAAC
*
1197158 ACAAAAACAAACAAAAACAAAAAAAA
1 A-AAAAAAAAACAAAAACAAAAAAAA
1197184 GGGGGTCCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.10
26 15 0.22
27 46 0.68
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.01
Consensus pattern (27 bp):
AAAAAAAAAACAAAAACAAAAAAAAAC
Found at i:1197132 original size:37 final size:37
Alignment explanation
Indices: 1197078--1197183 Score: 137
Period size: 37 Copynumber: 2.9 Consensus size: 37
1197068 GGCGTCCTCC
*
1197078 AAAAAAAA-AAAACAAAACAAAAAAAAACGAAAAA-AA
1 AAAAAAAACAAAAAAAAACAAAAAAAAAC-AAAAACAA
**
1197114 TGAAAAAACAAAAAAAAACAAAAAAAAACAAAAACAA
1 AAAAAAAACAAAAAAAAACAAAAAAAAACAAAAACAA
* *
1197151 AAAAAAAACAAAAACAAACAAAAACAAA-AAAAA
1 AAAAAAAACAAAAAAAAACAAAAAAAAACAAAAA
1197184 GGGGGTCCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
36 16 0.26
37 45 0.74
ACGTcount: A:0.87, C:0.10, G:0.02, T:0.01
Consensus pattern (37 bp):
AAAAAAAACAAAAAAAAACAAAAAAAAACAAAAACAA
Found at i:1198730 original size:27 final size:27
Alignment explanation
Indices: 1198686--1198739 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
1198676 ATTTTTTTCA
* *
1198686 AAAGCCCACAAGTTAGTGGCAACCTTT
1 AAAGCCCACAAATCAGTGGCAACCTTT
*
1198713 AAAGCCCACAAATCAGTGGCACCCTTT
1 AAAGCCCACAAATCAGTGGCAACCTTT
1198740 TTCGAAGCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (27 bp):
AAAGCCCACAAATCAGTGGCAACCTTT
Found at i:1198875 original size:28 final size:28
Alignment explanation
Indices: 1198620--1198909 Score: 179
Period size: 30 Copynumber: 9.9 Consensus size: 28
1198610 CATTTATCAC
* *
1198620 CCTTCAAAAGTCCACAAGTCAGTGGCATTT
1 CCTTTAAAAGCCCACAAGTCAGTGGCA--T
** *
1198650 TTTTTCAAAGCCCACAAGTCAGTGGCATT
1 CCTTTAAAAGCCCACAAGTCAGTGGCA-T
** * *
1198679 TTTTTCAAAAGCCCACAAGTTAGTGGCAA
1 CCTTT-AAAAGCCCACAAGTCAGTGGCAT
* *
1198708 CCTTT-AAAGCCCACAAATCAGTGGCAC
1 CCTTTAAAAGCCCACAAGTCAGTGGCAT
** * * *
1198735 CCTTTTTCGAAGCCCACAAGTCGGCGGCCT
1 CC--TTTAAAAGCCCACAAGTCAGTGGCAT
* * * * *
1198765 CTTTTCCAAAGCTCACAACTCTA-TAGCACT
1 CCTTT-AAAAGCCCACAAGTC-AGTGGCA-T
** * *
1198795 CTTTTTCTTTTTAAGCCCACAAGTTAGTGGCAC
1 C-----CTTTAAAAGCCCACAAGTCAGTGGCAT
*
1198828 CCTTTTCAAAAGCCCACAAGTCAGTGGCAA
1 CC-TTT-AAAAGCCCACAAGTCAGTGGCAT
*
1198858 CCTTTAAAAGCCCACAAGTCAGTGGCAA
1 CCTTTAAAAGCCCACAAGTCAGTGGCAT
1198886 CCTTTAAAAGCCCACAAGTCAGTG
1 CCTTTAAAAGCCCACAAGTCAGTG
1198910 ATGCAAACCT
Statistics
Matches: 206, Mismatches: 39, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
27 21 0.10
28 51 0.25
29 33 0.16
30 82 0.40
33 2 0.01
34 14 0.07
35 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
CCTTTAAAAGCCCACAAGTCAGTGGCAT
Found at i:1199089 original size:42 final size:42
Alignment explanation
Indices: 1199030--1199115 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
1199020 GCCTTCATAT
* *
1199030 TTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCACC
1 TTAAGTCCAATATAGCTGACCTTAAATCAGCACATTGGCACC
* *
1199072 TTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACC
1 TTAAGTCCAATATAGCTGACCTTAAATCAGCACATTGGCACC
1199114 TT
1 TT
1199116 TTCCATCTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
TTAAGTCCAATATAGCTGACCTTAAATCAGCACATTGGCACC
Found at i:1199115 original size:21 final size:21
Alignment explanation
Indices: 1199048--1199115 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
1199038 AATGTAGCTG
* *
1199048 ACCTTGAATCAGCACATTGGC
1 ACCTTAAATCAGCATATTGGC
* ** *
1199069 ACCTTAAGTCCAATATAGCTGG-
1 ACCTTAAAT-CAGCATA-TTGGC
1199091 -CCTTAAATCAGCATATTGGC
1 ACCTTAAATCAGCATATTGGC
1199111 ACCTT
1 ACCTT
1199116 TTCCATCTTT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 3 0.09
20 5 0.15
21 18 0.55
22 4 0.12
23 3 0.09
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (21 bp):
ACCTTAAATCAGCATATTGGC
Found at i:1199152 original size:52 final size:53
Alignment explanation
Indices: 1199072--1199223 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 53
1199062 CATTGGCACC
*
1199072 TTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTTC-CATCT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCATCT
* * ** *
1199124 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCATCT
* * * * * *
1199179 TTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1199224 ATCACTTTTC
Statistics
Matches: 80, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
52 34 0.43
53 5 0.06
54 6 0.08
55 35 0.44
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (53 bp):
TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCATCT
Found at i:1199199 original size:55 final size:52
Alignment explanation
Indices: 1199072--1199207 Score: 155
Period size: 52 Copynumber: 2.6 Consensus size: 52
1199062 CATTGGCACC
* * *
1199072 TTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTTCCATCT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCATCT
* * *
1199124 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCT
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CATCT
* * * *
1199179 TTAAGCCCAATATCGTTGGCCATGAATCA
1 TTAAGTCCAATATAGCTGGCCTTGAATCA
1199208 ACATATTGGC
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
52 34 0.49
53 2 0.03
54 5 0.07
55 28 0.41
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (52 bp):
TTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCATCT
Found at i:1200394 original size:21 final size:21
Alignment explanation
Indices: 1200370--1200410 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1200360 TCACGTTAAC
1200370 AAGCCATGATTCATGCATTTT
1 AAGCCATGATTCATGCATTTT
* *
1200391 AAGCTATGCTTCATGCATTT
1 AAGCCATGATTCATGCATTT
1200411 ATGACATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (21 bp):
AAGCCATGATTCATGCATTTT
Found at i:1223602 original size:97 final size:96
Alignment explanation
Indices: 1223258--1223603 Score: 345
Period size: 97 Copynumber: 3.6 Consensus size: 96
1223248 CGCACATGAA
* * * * * * *
1223258 CTGGCGACACCCAAAAAGCCCTCACAAGCTGGTGGCACTCAACTTTTCCAAAAGCCTATACGAGT
1 CTGGCGGCATCCAAAAAGCCCACACAAGCTAGTGGCACTAAACTTTTCCAAAAGCCTACACGAGC
* * * *
1223323 TGGTGACATCATTTCTCAAAGCCTGCATGAG
66 TGATGATATCCTTTCTCAAAGCCTGCACGAG
** * * * * * *
1223354 CTGGCAACATCAAAAAAGGCTACACAAGCTAGAGGCACTTAAACCTTTCCAAAAACCTACACGAG
1 CTGGCGGCATCCAAAAAGCCCACACAAGCTAGTGGCAC-TAAACTTTTCCAAAAGCCTACACGAG
* *
1223419 CT-AGTGTTATCCTTTCTCAAAGCCCGCACGAG
65 CTGA-TGATATCCTTTCTCAAAGCCTGCACGAG
* * * * * * *
1223451 ATGGTGGCA-CCTAAAAAGCCCACATAAGTTGGTGGTAGCCAAACTTTTCCAAAAGCCTACACGA
1 CTGGCGGCATCC-AAAAAGCCCACACAAGCTAGTGGCA-CTAAACTTTTCCAAAAGCCTACACGA
* *
1223515 GCTGATGGTATCCTTTCTCAAAGCCTGCACAAG
64 GCTGATGATATCCTTTCTCAAAGCCTGCACGAG
* *
1223548 CCGGCGGCATCCAAAAAGCCCATACAAGCTAGTGGCACTTAAACTTTTCCAAAAGC
1 CTGGCGGCATCCAAAAAGCCCACACAAGCTAGTGGCAC-TAAACTTTTCCAAAAGC
1223604 TCGTATGAGT
Statistics
Matches: 197, Mismatches: 46, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
96 32 0.16
97 161 0.82
98 4 0.02
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (96 bp):
CTGGCGGCATCCAAAAAGCCCACACAAGCTAGTGGCACTAAACTTTTCCAAAAGCCTACACGAGC
TGATGATATCCTTTCTCAAAGCCTGCACGAG
Found at i:1232241 original size:22 final size:22
Alignment explanation
Indices: 1232200--1232241 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
1232190 AAGTATCCCC
*
1232200 AAGAAAAATTTAATATTTTGGA
1 AAGAAAAATTTAATAATTTGGA
1232222 AAGAAAAATTTAGA-AATTTG
1 AAGAAAAATTTA-ATAATTTG
1232242 ACAAAAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.33
Consensus pattern (22 bp):
AAGAAAAATTTAATAATTTGGA
Found at i:1234669 original size:41 final size:41
Alignment explanation
Indices: 1234624--1234720 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
1234614 ACAATAATAA
* *
1234624 ATGTATCGATACATTTTAAGCAT-TAAT-AGATACATTTACTT
1 ATGTATCGATACATTTCAAGCATGT-ATCA-ATACATTCACTT
*
1234665 ATGTATCGATACATTTCAGGCATGTATCAATACATTCACTT
1 ATGTATCGATACATTTCAAGCATGTATCAATACATTCACTT
*
1234706 ATGTATTGATACATT
1 ATGTATCGATACATT
1234721 ATCTATTGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 48 0.96
42 2 0.04
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATTTCAAGCATGTATCAATACATTCACTT
Found at i:1234675 original size:20 final size:20
Alignment explanation
Indices: 1234652--1234720 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
1234642 AGCATTAATA
1234652 GATACATTTACTTATGTATC
1 GATACATTTACTTATGTATC
***
1234672 GATACATTTCAGGCATGTATC
1 GATACATTT-ACTTATGTATC
* * *
1234693 AATACATTCACTTATGTATT
1 GATACATTTACTTATGTATC
1234713 GATACATT
1 GATACATT
1234721 ATCTATTGTG
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 23 0.61
21 15 0.39
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (20 bp):
GATACATTTACTTATGTATC
Found at i:1234691 original size:21 final size:20
Alignment explanation
Indices: 1234624--1234700 Score: 66
Period size: 21 Copynumber: 3.8 Consensus size: 20
1234614 ACAATAATAA
1234624 ATGTATCGATACATTTTAAGC
1 ATGTATCGATACA-TTTAAGC
* ***
1234645 AT-TAATAGATACATTTACTT
1 ATGT-ATCGATACATTTAAGC
*
1234665 ATGTATCGATACATTTCAGGC
1 ATGTATCGATACATTT-AAGC
*
1234686 ATGTATCAATACATT
1 ATGTATCGATACATT
1234701 CACTTATGTA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 18 0.41
21 26 0.59
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTAAGC
Found at i:1235256 original size:20 final size:19
Alignment explanation
Indices: 1235231--1235367 Score: 150
Period size: 20 Copynumber: 6.8 Consensus size: 19
1235221 TTTTACCTAG
1235231 ATGTATCGATACATCTTCCA
1 ATGTATCGATACATCTT-CA
*
1235251 ATGTATCGATACAT-TACCCA
1 ATGTATCGATACATCT--TCA
1235271 GATGTATCGATACATCTTTCA
1 -ATGTATCGATACATC-TTCA
* * *
1235292 ATGGATCGATACATGTATGA
1 ATGTATCGATACATCT-TCA
1235312 ATGTATCGATACATTCTTCA
1 ATGTATCGATACA-TCTTCA
*
1235332 ATATATCGATACATTCTTCA
1 ATGTATCGATACA-TCTTCA
1235352 ATGTATCGATACATCT
1 ATGTATCGATACATCT
1235368 AGTTAAATTT
Statistics
Matches: 100, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
19 5 0.05
20 76 0.76
21 18 0.18
23 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (19 bp):
ATGTATCGATACATCTTCA
Found at i:1235277 original size:21 final size:21
Alignment explanation
Indices: 1235223--1235285 Score: 85
Period size: 20 Copynumber: 3.0 Consensus size: 21
1235213 AGTCACATTT
*
1235223 TTACCTAGATGTATCGATACA
1 TTACCCAGATGTATCGATACA
*
1235244 TCT-TCCA-ATGTATCGATACA
1 T-TACCCAGATGTATCGATACA
1235264 TTACCCAGATGTATCGATACA
1 TTACCCAGATGTATCGATACA
1235285 T
1 T
1235286 CTTTCAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.03
20 17 0.47
21 17 0.47
22 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (21 bp):
TTACCCAGATGTATCGATACA
Found at i:1235332 original size:40 final size:38
Alignment explanation
Indices: 1235231--1235367 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 38
1235221 TTTTACCTAG
*
1235231 ATGTATCGATACATCTTCCAATGTATCGATACATTACCCA
1 ATGTATCGATACATCTT-CAATGTATCGATACATTA-TCA
* *
1235271 GATGTATCGATACATCTTTCAATGGATCGATACATGTATGA
1 -ATGTATCGATACATC-TTCAATGTATCGATACAT-TATCA
* *
1235312 ATGTATCGATACATTCTTCAATATATCGATACATTCTTCA
1 ATGTATCGATACA-TCTTCAATGTATCGATACATT-ATCA
1235352 ATGTATCGATACATCT
1 ATGTATCGATACATCT
1235368 AGTTAAATTT
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
39 4 0.05
40 44 0.52
41 33 0.39
42 4 0.05
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (38 bp):
ATGTATCGATACATCTTCAATGTATCGATACATTATCA
Found at i:1249080 original size:12 final size:12
Alignment explanation
Indices: 1249063--1249121 Score: 55
Period size: 12 Copynumber: 4.6 Consensus size: 12
1249053 CCTTTGTACC
1249063 AAAAAAAACAAA
1 AAAAAAAACAAA
1249075 AAAAAACACACCAAA
1 AAAAAA-A-A-CAAA
* *
1249090 AAACAAACCAAA
1 AAAAAAAACAAA
*
1249102 AAAACAAACAAA
1 AAAAAAAACAAA
1249114 TAAAAAAA
1 -AAAAAAA
1249122 GAGGGTCTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
12 19 0.51
13 7 0.19
14 2 0.05
15 9 0.24
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.02
Consensus pattern (12 bp):
AAAAAAAACAAA
Found at i:1249118 original size:13 final size:13
Alignment explanation
Indices: 1249074--1249110 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
1249064 AAAAAAACAA
*
1249074 AAAAAAACACACC
1 AAAAAAACAAACC
1249087 -AAAAAACAAACC
1 AAAAAAACAAACC
1249099 AAAAAAACAAAC
1 AAAAAAACAAAC
1249111 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAACC
Found at i:1250402 original size:28 final size:28
Alignment explanation
Indices: 1250370--1250772 Score: 404
Period size: 28 Copynumber: 14.4 Consensus size: 28
1250360 TCATCTCTTC
* * *
1250370 AAAGCCCATAAGTCAGTGACATCATTTT
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
*
1250398 AAAGCCCATAAGTCAGTGGCATCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
* *
1250426 AAAGCCCATAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
**
1250454 AAAGCCCACAAGTCAGTAACAT-CTTTT
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
* * *
1250481 CAAAGCCCACAAGTCAATGGCATCATTTC
1 -AAAGCCCACAAGTCAGTGGCATCCTTTT
* *
1250510 AAAGCCCACAAGTCAGTGGTACCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
* *
1250538 CAAAGCCCATAAGTCAGTGGCA-CATTTT
1 -AAAGCCCACAAGTCAGTGGCATCCTTTT
* *
1250566 CATAGCCCACAAGTTAGTGGCA-CCTTTT
1 -AAAGCCCACAAGTCAGTGGCATCCTTTT
* * *
1250594 CATAGCCCGCAAGTCACTGGCAT-CTTTT
1 -AAAGCCCACAAGTCAGTGGCATCCTTTT
* * *
1250622 CAAAGCACACAAGTCAATGGCATCCTTCT
1 -AAAGCCCACAAGTCAGTGGCATCCTTTT
* *
1250651 AAAGCCCACGAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
* *
1250679 AAAGCCCACGAGTCAGTGGCAT-CTCTTC
1 AAAGCCCACAAGTCAGTGGCATCCT-TTT
* * * *
1250707 AAAGCCTACAAGTTAGAGGCA-CCTTCTC
1 AAAGCCCACAAGTCAGTGGCATCCTT-TT
* *
1250735 AAAACCCACAAGTCAGTAGCATCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCCTTTT
1250763 AAAGCCCACA
1 AAAGCCCACA
1250773 CAAGTTGGTG
Statistics
Matches: 318, Mismatches: 48, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
27 7 0.02
28 281 0.88
29 30 0.09
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCATCCTTTT
Found at i:1251203 original size:20 final size:19
Alignment explanation
Indices: 1251178--1251293 Score: 81
Period size: 20 Copynumber: 5.7 Consensus size: 19
1251168 TTTTACCCAG
1251178 ATGTATCGATACATCTTCCA
1 ATGTATCGATACATCTT-CA
* *
1251198 ATGTATCAATACAT-TACCCAA
1 ATGTATCGATACATCT--TC-A
* *
1251219 ATTTATCGGTTACATCTTTCA
1 ATGTATC-GATACATC-TTCA
* * * *
1251240 ATATATCGATATATGTATGA
1 ATGTATCGATACATCT-TCA
1251260 ATGTATCGATACATTCTTCA
1 ATGTATCGATACA-TCTTCA
1251280 ATGTATCGATACAT
1 ATGTATCGATACAT
1251294 TATGTTCTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
19 3 0.04
20 47 0.64
21 16 0.22
22 6 0.08
24 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (19 bp):
ATGTATCGATACATCTTCA
Found at i:1257134 original size:18 final size:18
Alignment explanation
Indices: 1257108--1257142 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1257098 CTATGATTAT
* *
1257108 AATATAATAAAATATATA
1 AATACAATAAAAAATATA
1257126 AATACAATAAAAAATAT
1 AATACAATAAAAAATAT
1257143 GAATTGCTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
AATACAATAAAAAATATA
Found at i:1257485 original size:11 final size:11
Alignment explanation
Indices: 1257469--1257529 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
1257459 TAATAATTAA
1257469 TATATTTATAT
1 TATATTTATAT
1257480 TATATTTATA-
1 TATATTTATAT
*
1257490 TATTTTTTATTAT
1 TA-TATTTA-TAT
*
1257503 TATATTTAAAT
1 TATATTTATAT
1257514 TATA-TTATATT
1 TATATTTATA-T
1257525 TATAT
1 TATAT
1257530 AAATTTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.15
11 26 0.63
12 7 0.17
13 2 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTTATAT
Found at i:1257526 original size:28 final size:25
Alignment explanation
Indices: 1257469--1257527 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 25
1257459 TAATAATTAA
1257469 TATATTTA-TATTATATTTATATAT
1 TATATTTATTATTATATTTATATAT
1257493 T-T-TTTATTATTATATTTAAATTATAT
1 TATATTTATTATTATATTT--A-TATAT
1257519 TATATTTAT
1 TATATTTAT
1257528 ATAAATTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
22 4 0.14
23 11 0.38
24 1 0.03
25 1 0.03
26 6 0.21
27 1 0.03
28 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
TATATTTATTATTATATTTATATAT
Found at i:1263863 original size:14 final size:14
Alignment explanation
Indices: 1263841--1263872 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1263831 CTTGTTAGAT
1263841 AGATATGGGATAAA
1 AGATATGGGATAAA
*
1263855 AGATCTGGGATAAA
1 AGATATGGGATAAA
1263869 AGAT
1 AGAT
1263873 TGTGTGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.28, T:0.22
Consensus pattern (14 bp):
AGATATGGGATAAA
Found at i:1268945 original size:15 final size:16
Alignment explanation
Indices: 1268880--1268950 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 16
1268870 TCCGAAACAG
1268880 AAATAATTCAAATCCA
1 AAATAATTCAAATCCA
* * **
1268896 AAATGATTTAAATTTA
1 AAATAATTCAAATCCA
1268912 AAATAATTCAAAAT--A
1 AAATAATTC-AAATCCA
*
1268927 AAAAAATTCAAATCCA
1 AAATAATTCAAATCCA
*
1268943 AAAAAATT
1 AAATAATT
1268951 ATTTTATAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
14 4 0.09
15 9 0.20
16 28 0.62
17 4 0.09
ACGTcount: A:0.61, C:0.10, G:0.01, T:0.28
Consensus pattern (16 bp):
AAATAATTCAAATCCA
Found at i:1274783 original size:2 final size:2
Alignment explanation
Indices: 1274776--1274803 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1274766 TTACAAAACA
1274776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1274804 GGTATTGGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1281386 original size:20 final size:19
Alignment explanation
Indices: 1281339--1281387 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
1281329 AAAAAAAAAT
1281339 TATAATATATATATTTATA
1 TATAATATATATATTTATA
* *
1281358 AATAAATATATATATTTTTA
1 TAT-AATATATATATTTATA
1281378 TAT-ATATATA
1 TATAATATATA
1281388 AGTATGTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 7 0.27
19 2 0.08
20 17 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATAATATATATATTTATA
Found at i:1281952 original size:23 final size:24
Alignment explanation
Indices: 1281908--1281953 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 24
1281898 TTAAAATTGA
1281908 AATTATTCAAATCTAAATTAACTCG
1 AATTATT-AAATCTAAATTAACTCG
1281933 AATTATT-AATCTGAAA-TAACT
1 AATTATTAAATCT-AAATTAACT
1281954 TAAAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 10 0.50
24 3 0.15
25 7 0.35
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (24 bp):
AATTATTAAATCTAAATTAACTCG
Found at i:1282285 original size:2 final size:2
Alignment explanation
Indices: 1282278--1282318 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1282268 TATTTTAGTT
1282278 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1282319 GCCTCCATCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1283540 original size:2 final size:2
Alignment explanation
Indices: 1283535--1283567 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1283525 TTGGTTCACA
1283535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1283568 AAATAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1283920 original size:16 final size:16
Alignment explanation
Indices: 1283899--1283935 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
1283889 ACTTTATCTC
1283899 TAAAAAAACTAAAACA
1 TAAAAAAACTAAAACA
*
1283915 TAAAAAAGCTAAAACA
1 TAAAAAAACTAAAACA
1283931 TAAAA
1 TAAAA
1283936 GAGTAAGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.73, C:0.11, G:0.03, T:0.14
Consensus pattern (16 bp):
TAAAAAAACTAAAACA
Found at i:1285254 original size:17 final size:17
Alignment explanation
Indices: 1285228--1285270 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
1285218 TATCAGATAT
1285228 AATA-ATATTTTAATTA
1 AATATATATTTTAATTA
*
1285244 AATATATATTTTTATTA
1 AATATATATTTTAATTA
*
1285261 AATATTTATT
1 AATATATATT
1285271 ATTTTTGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATATATTTTAATTA
Found at i:1285276 original size:21 final size:21
Alignment explanation
Indices: 1285249--1285295 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
1285239 AATTAAATAT
*
1285249 ATATTTTT-ATTAAATATTTA
1 ATATTTTTGATGAAATATTTA
* *
1285269 TTATTTTTGATGATATATTTA
1 ATATTTTTGATGAAATATTTA
1285290 ATATTT
1 ATATTT
1285296 AAATTATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
ATATTTTTGATGAAATATTTA
Found at i:1285743 original size:2 final size:2
Alignment explanation
Indices: 1285736--1285762 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1285726 AATTTCTTTC
1285736 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1285763 AAGACATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1291857 original size:22 final size:19
Alignment explanation
Indices: 1291826--1291867 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
1291816 TATTTTTATT
1291826 TAAATTTAATTATAAAATATA
1 TAAATTTAA-TATAAAA-ATA
1291847 TAAATATTAATATAAAAATA
1 TAAAT-TTAATATAAAAATA
1291867 T
1 T
1291868 TTTTTAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATTTAATATAAAAATA
Found at i:1297276 original size:11 final size:12
Alignment explanation
Indices: 1297260--1297289 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
1297250 TTAATTGTAT
1297260 TATTTTTC-TTC
1 TATTTTTCATTC
1297271 TATTTTTCATTC
1 TATTTTTCATTC
1297283 TATTTTT
1 TATTTTT
1297290 GCTTTAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (12 bp):
TATTTTTCATTC
Found at i:1301120 original size:27 final size:27
Alignment explanation
Indices: 1301090--1301158 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
1301080 AAAAAAAGTA
*
1301090 GGGTTAGAGTATCCCTTTGGAAGAGCG
1 GGGTTGGAGTATCCCTTTGGAAGAGCG
1301117 GGGTTGGAGTATCCCTTTGGAAGAGCG
1 GGGTTGGAGTATCCCTTTGGAAGAGCG
1301144 GGGTTGGAGTATCCC
1 GGGTTGGAGTATCCC
1301159 CAACAATCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.19, C:0.16, G:0.39, T:0.26
Consensus pattern (27 bp):
GGGTTGGAGTATCCCTTTGGAAGAGCG
Found at i:1301303 original size:2 final size:2
Alignment explanation
Indices: 1301296--1301328 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1301286 TTAAAGGTAT
1301296 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1301329 TCTAAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1302330 original size:6 final size:7
Alignment explanation
Indices: 1302296--1302329 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
1302286 TAAAAAAGAA
1302296 AAAAATT
1 AAAAATT
1302303 AAAAAATT
1 -AAAAATT
1302311 AAAAATT
1 AAAAATT
1302318 AAAAA-T
1 AAAAATT
1302324 AAAAAT
1 AAAAAT
1302330 ACAAAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.24
7 12 0.48
8 7 0.28
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:1302335 original size:13 final size:14
Alignment explanation
Indices: 1302296--1302329 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
1302286 TAAAAAAGAA
1302296 AAAAATTAAAAAATT
1 AAAAATT-AAAAATT
1302311 AAAAATTAAAAA-T
1 AAAAATTAAAAATT
1302324 AAAAAT
1 AAAAAT
1302330 ACAAAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 5 0.26
15 7 0.37
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATTAAAAATT
Found at i:1302335 original size:14 final size:14
Alignment explanation
Indices: 1302296--1302346 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
1302286 TAAAAAAGAA
*
1302296 AAAAATTAAAAAATT
1 AAAAATT-AAAAATC
1302311 AAAAATTAAAAAT-
1 AAAAATTAAAAATC
*
1302324 AAAAATACAAAAAATC
1 AAAAAT--TAAAAATC
1302340 AAAAATT
1 AAAAATT
1302347 TTGAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 6 0.19
14 6 0.19
15 13 0.42
16 6 0.19
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAATTAAAAATC
Found at i:1302362 original size:7 final size:7
Alignment explanation
Indices: 1302285--1302345 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
1302275 TTTATTTGAT
1302285 ATAAAAA
1 ATAAAAA
*
1302292 AGAAAAAA
1 A-TAAAAA
1302300 ATTAAAAA
1 A-TAAAAA
*
1302308 ATTAAAA
1 ATAAAAA
*
1302315 ATTAAAA
1 ATAAAAA
1302322 ATAAAAA
1 ATAAAAA
*
1302329 TACAAAAA
1 -ATAAAAA
*
1302337 ATCAAAA
1 ATAAAAA
1302344 AT
1 AT
1302346 TTTGAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
7 26 0.59
8 18 0.41
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (7 bp):
ATAAAAA
Found at i:1302378 original size:34 final size:33
Alignment explanation
Indices: 1302318--1302391 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 33
1302308 ATTAAAAATT
* *
1302318 AAAAATAAAAATACAAAAAATCAAAAATTTTGAA
1 AAAAATAAAAATACAAAAAATCAAAAAATAT-AA
*
1302352 AAAAATAAAAAT-C-TAAAATCTAAAAAAATATAA
1 AAAAATAAAAATACAAAAAATC--AAAAAATATAA
1302385 AAAAATA
1 AAAAATA
1302392 TTAAAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
32 6 0.17
33 10 0.29
34 19 0.54
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.20
Consensus pattern (33 bp):
AAAAATAAAAATACAAAAAATCAAAAAATATAA
Found at i:1302670 original size:26 final size:26
Alignment explanation
Indices: 1302630--1302684 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
1302620 AAAGAGGAAC
*
1302630 GAACGGGAGCTCGAGCAAGGAAGAAT
1 GAACGGGAGCCCGAGCAAGGAAGAAT
*
1302656 GAACGGTAGCCCGAGCAAGGAAGAAT
1 GAACGGGAGCCCGAGCAAGGAAGAAT
1302682 GAA
1 GAA
1302685 TAGCAGCTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.16, G:0.36, T:0.07
Consensus pattern (26 bp):
GAACGGGAGCCCGAGCAAGGAAGAAT
Found at i:1302696 original size:26 final size:26
Alignment explanation
Indices: 1302637--1302699 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
1302627 AACGAACGGG
* *
1302637 AGCTCGAGCAAGGAAGAATGAACGGT
1 AGCTCGAGCAAGGAAGAATGAACAGC
* *
1302663 AGCCCGAGCAAGGAAGAATGAATAGC
1 AGCTCGAGCAAGGAAGAATGAACAGC
1302689 AGCTCGAGCAA
1 AGCTCGAGCAA
1302700 AGAGCAAGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.40, C:0.19, G:0.32, T:0.10
Consensus pattern (26 bp):
AGCTCGAGCAAGGAAGAATGAACAGC
Found at i:1305978 original size:10 final size:11
Alignment explanation
Indices: 1305956--1305984 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
1305946 GAAGTTTTTA
1305956 TGAAAAATGTT
1 TGAAAAATGTT
1305967 TGAAAAAT-TT
1 TGAAAAATGTT
1305977 TGAAAAAT
1 TGAAAAAT
1305985 CATCTAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (11 bp):
TGAAAAATGTT
Found at i:1307031 original size:13 final size:12
Alignment explanation
Indices: 1307009--1307058 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
1306999 TTTGTTTCTA
1307009 TTTC-TTCTCTCT
1 TTTCTTTCTCT-T
1307021 TTTCTTTCTCTT
1 TTTCTTTCTCTT
*
1307033 TTT-TTTTTCTTT
1 TTTCTTTCTC-TT
1307045 TTTCTTTCT-TT
1 TTTCTTTCTCTT
1307056 TTT
1 TTT
1307059 TTAGTTGAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
11 10 0.30
12 13 0.39
13 10 0.30
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:1307046 original size:11 final size:11
Alignment explanation
Indices: 1307018--1307060 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
1307008 ATTTCTTCTC
* *
1307018 TCTTTTCTTTC
1 TCTTTTTTTTT
1307029 TCTTTTTTTTT
1 TCTTTTTTTTT
*
1307040 TCTTTTTTCTT
1 TCTTTTTTTTT
1307051 TCTTTTTTTT
1 TCTTTTTTTT
1307061 AGTTGAACCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:1307059 original size:13 final size:13
Alignment explanation
Indices: 1307020--1307060 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
1307010 TTCTTCTCTC
1307020 TTTTCTTTCTCTTT
1 TTTTCTTTCT-TTT
1307034 TTTT-TTTC--TT
1 TTTTCTTTCTTTT
1307044 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
1307057 TTTT
1 TTTT
1307061 AGTTGAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
10 6 0.25
11 4 0.17
13 10 0.42
14 4 0.17
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:1309123 original size:28 final size:28
Alignment explanation
Indices: 1308452--1309110 Score: 726
Period size: 28 Copynumber: 22.9 Consensus size: 28
1308442 CATCGACTTG
* *
1308452 TGTGGGCTTTGAAAAGGGTTGCCACCGACTT
1 TGTGGGCTTTG-AAA-GGATGCCACTGAC-T
* *
1308483 GTGTGGGCTTTAGAGAAGGGTGCCACTAACT
1 -TGTGGGCTTT-GA-AAGGATGCCACTGACT
* * *
1308514 TGTGGGCTTTAAAAGGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1308542 TGTCGAC-TTAAAATTGATGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
* * *
1308570 TGTAGACTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
1308599 TGTTGGCTTTGAAAAAGAAGATGCCACTAACT
1 TGTGGGCTTTG--AAAG--GATGCCACTGACT
* * * *
1308631 TATAGACTTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* *
1308660 TGTGGACTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1308688 TGTGGGCTTTGAAAGGGTGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1308716 TGTTGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1308744 TGTGGGCTTTGAAAGGGTGCCACTGACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1308772 TATGGGCTTTGAAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1308800 TCTGGGCTTTGGAAGGGTGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
* *
1308829 GTGTGGGCTTTGAAAGGGTGCCACCGACT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1308858 TGTGGGCTTTGAAAAGATGCCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
1308886 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1308914 TGTGGGTTTTGAAAAGATGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
1308943 GTGTGGGCTTTGAGAAGGATGCCACTGACT
1 -TGTGGGCTTTGA-AAGGATGCCACTGACT
1308973 TGTGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* *
1309002 TGTGGGCTTTGAGAAGGATGCTATTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
1309031 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1309059 TGTGGGCTTTGAAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
1309087 TGTGGGCTTTGAAAGGATGCCACT
1 TGTGGGCTTTGAAAGGATGCCACT
1309111 AACCTATGGG
Statistics
Matches: 546, Mismatches: 67, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
27 6 0.01
28 314 0.58
29 113 0.21
30 53 0.10
31 17 0.03
32 36 0.07
33 7 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:1310035 original size:18 final size:18
Alignment explanation
Indices: 1310010--1310048 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
1310000 ATCTGGACCC
1310010 TTTTTTTTTT-AATTTTT
1 TTTTTTTTTTCAATTTTT
*
1310027 TTTTGTTTTTTCTATTTTT
1 TTTT-TTTTTTCAATTTTT
1310046 TTT
1 TTT
1310049 GGCACAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 6 0.32
19 9 0.47
ACGTcount: A:0.08, C:0.03, G:0.03, T:0.87
Consensus pattern (18 bp):
TTTTTTTTTTCAATTTTT
Found at i:1319199 original size:440 final size:440
Alignment explanation
Indices: 1318378--1319252 Score: 1732
Period size: 440 Copynumber: 2.0 Consensus size: 440
1318368 TGTTATTGAT
*
1318378 GTGATGGATTCGTCATTCCTCATACCTGGGAGTCGTAACACCTCCTCCCCAATGTCGCTCTATGC
1 GTGATGGATTCGTCACTCCTCATACCTGGGAGTCGTAACACCTCCTCCCCAATGTCGCTCTATGC
1318443 AATGAACTTTCTTCCAAGCTTGGAAAGCAGATTGGACTTTTACTTTGTAATTGGCTTTTCCATAT
66 AATGAACTTTCTTCCAAGCTTGGAAAGCAGATTGGACTTTTACTTTGTAATTGGCTTTTCCATAT
1318508 TTAAAGTCCCAATGCCCAAGGTTTTCAAAGAATGGAGTGAATTGCTGACACTGAAGCTGGTGCAA
131 TTAAAGTCCCAATGCCCAAGGTTTTCAAAGAATGGAGTGAATTGCTGACACTGAAGCTGGTGCAA
*
1318573 TATGAGCAATGGTACATAGCAAGTGCTTCCCCACAATCCCATGAATGGTACACAAGTCAAGTCTC
196 TACGAGCAATGGTACATAGCAAGTGCTTCCCCACAATCCCATGAATGGTACACAAGTCAAGTCTC
1318638 TGCATCTATAGACAATTGTATGTGAAAACATCCAAGCAGCTTTCCATGTAATCTCATCATCCTTA
261 TGCATCTATAGACAATTGTATGTGAAAACATCCAAGCAGCTTTCCATGTAATCTCATCATCCTTA
1318703 AGGTTTCGAAGTGTCTGAATCCATTATTCTTCTGATTTATTTAGAATCCGTTCTCCCTTGAGAAT
326 AGGTTTCGAAGTGTCTGAATCCATTATTCTTCTGATTTATTTAGAATCCGTTCTCCCTTGAGAAT
1318768 CTTAGAAAAAGGGCTAGAATTGAAGAATAAGTTATGTCTCATACCTGGGA
391 CTTAGAAAAAGGGCTAGAATTGAAGAATAAGTTATGTCTCATACCTGGGA
1318818 GTGATGGATTCGTCACTCCTCATACCTGGGAGTCGTAACACCTCCTCCCCAATGTCGCTCTATGC
1 GTGATGGATTCGTCACTCCTCATACCTGGGAGTCGTAACACCTCCTCCCCAATGTCGCTCTATGC
1318883 AATGAACTTTCTTCCAAGCTTGGAAAGCAGATTGGACTTTTACTTTGTAATTGGCTTTTCCATAT
66 AATGAACTTTCTTCCAAGCTTGGAAAGCAGATTGGACTTTTACTTTGTAATTGGCTTTTCCATAT
1318948 TTAAAGTCCCAATGCCCAAGGTTTTCAAAGAATGGAGTGAATTGCTGACACTGAAGCTGGTGCAA
131 TTAAAGTCCCAATGCCCAAGGTTTTCAAAGAATGGAGTGAATTGCTGACACTGAAGCTGGTGCAA
1319013 TACGAGCAATGGTACATAGCAAGTGCTTCCCCACAATCCCATGAATGGTACACAAGTCAAGTCTC
196 TACGAGCAATGGTACATAGCAAGTGCTTCCCCACAATCCCATGAATGGTACACAAGTCAAGTCTC
1319078 TGCATCTATAGACAATTGTATGTGAAAACATCCAAGCAGCTTTCCATGTAATCTCATCATCCTTA
261 TGCATCTATAGACAATTGTATGTGAAAACATCCAAGCAGCTTTCCATGTAATCTCATCATCCTTA
1319143 AGGTTTCGAAGTGTCTGAATCCATTATTCTTCTGATTTATTTAGAATCCGTTCTCCCTTGAGAAT
326 AGGTTTCGAAGTGTCTGAATCCATTATTCTTCTGATTTATTTAGAATCCGTTCTCCCTTGAGAAT
1319208 CTTAGAAAAAGGGCTAGAATTGAAGAATAAGTTATGTCTCATACC
391 CTTAGAAAAAGGGCTAGAATTGAAGAATAAGTTATGTCTCATACC
1319253 CTTTTCAATG
Statistics
Matches: 433, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
440 433 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (440 bp):
GTGATGGATTCGTCACTCCTCATACCTGGGAGTCGTAACACCTCCTCCCCAATGTCGCTCTATGC
AATGAACTTTCTTCCAAGCTTGGAAAGCAGATTGGACTTTTACTTTGTAATTGGCTTTTCCATAT
TTAAAGTCCCAATGCCCAAGGTTTTCAAAGAATGGAGTGAATTGCTGACACTGAAGCTGGTGCAA
TACGAGCAATGGTACATAGCAAGTGCTTCCCCACAATCCCATGAATGGTACACAAGTCAAGTCTC
TGCATCTATAGACAATTGTATGTGAAAACATCCAAGCAGCTTTCCATGTAATCTCATCATCCTTA
AGGTTTCGAAGTGTCTGAATCCATTATTCTTCTGATTTATTTAGAATCCGTTCTCCCTTGAGAAT
CTTAGAAAAAGGGCTAGAATTGAAGAATAAGTTATGTCTCATACCTGGGA
Found at i:1321542 original size:13 final size:13
Alignment explanation
Indices: 1321524--1321548 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1321514 AATACTCAAA
1321524 TGTATCGATACAT
1 TGTATCGATACAT
1321537 TGTATCGATACA
1 TGTATCGATACA
1321549 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1321598 original size:52 final size:52
Alignment explanation
Indices: 1321557--1321685 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
1321547 CACTGATCTT
1321557 TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
* *
1321609 TATATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
*
1321661 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATACAGGCAAATTT
1321686 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
Found at i:1333654 original size:2 final size:2
Alignment explanation
Indices: 1333647--1333671 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1333637 ACAAACTTGA
1333647 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1333672 CACATGCTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1337179 original size:13 final size:13
Alignment explanation
Indices: 1337161--1337185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1337151 AATACTCAAA
1337161 TGTATCGATACAT
1 TGTATCGATACAT
1337174 TGTATCGATACA
1 TGTATCGATACA
1337186 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1337235 original size:52 final size:52
Alignment explanation
Indices: 1337194--1337322 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1337184 CACTGATCTT
1337194 TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
* * *
1337246 TATATCGATACATACAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
*
1337298 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATACAGGCAAATTT
1337323 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
Found at i:1339715 original size:21 final size:22
Alignment explanation
Indices: 1339670--1339723 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
1339660 TGGACATGTT
1339670 AAAAATGCATGAAACATAATAA
1 AAAAATGCATGAAACATAATAA
1339692 AAAAATGCATGAAACATAAT-A
1 AAAAATGCATGAAACATAATAA
1339713 AAAAATGCATG
1 AAAAATGCATG
1339724 GTCAAAGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 12 0.38
22 20 0.62
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (22 bp):
AAAAATGCATGAAACATAATAA
Found at i:1340681 original size:20 final size:20
Alignment explanation
Indices: 1340634--1340708 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
1340624 AAAAAGACAT
*
1340634 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1340653 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1340674 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
1340694 AATGTATCGATACAT
1 AATGTATCGATACAT
1340709 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1340702 original size:40 final size:39
Alignment explanation
Indices: 1340631--1340708 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
1340621 GGTAAAAAGA
* *
1340631 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
1340670 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1340709 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1347400 original size:3 final size:3
Alignment explanation
Indices: 1347392--1347425 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1347382 TTTAAAATCG
1347392 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1347426 AGATTTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1351728 original size:33 final size:35
Alignment explanation
Indices: 1351687--1351757 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 35
1351677 TAAGTAAAAC
* *
1351687 AATAGTGGGTTTGTAATTTAAA-TTT-AAAAT-TT
1 AATAGTGGGTTTATAATGTAAAGTTTGAAAATATT
1351719 AATATGTGGGTTTATAATGTAAAGTTTGAAAATATT
1 AATA-GTGGGTTTATAATGTAAAGTTTGAAAATATT
1351755 AAT
1 AAT
1351758 TATCCTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 4 0.12
33 16 0.48
34 3 0.09
35 5 0.15
36 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (35 bp):
AATAGTGGGTTTATAATGTAAAGTTTGAAAATATT
Found at i:1352233 original size:12 final size:12
Alignment explanation
Indices: 1352203--1352247 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
1352193 AAATAATTTT
1352203 ATTTAAAT-TTA
1 ATTTAAATATTA
1352214 ATTATAAATATTA
1 ATT-TAAATATTA
*
1352227 ATTTAAAAATTA
1 ATTTAAATATTA
1352239 TATTTAAAT
1 -ATTTAAAT
1352248 TTTTTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 3 0.10
12 13 0.45
13 13 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTTAAATATTA
Found at i:1352732 original size:5 final size:5
Alignment explanation
Indices: 1352714--1352774 Score: 61
Period size: 5 Copynumber: 11.8 Consensus size: 5
1352704 ATTATACATA
* * *
1352714 ATAAT ATGAAT ATAAT ATAAT AAAAAT ATAAT ATTAT ATAAT AT-AT AAATAT
1 ATAAT AT-AAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT
1352766 ATAAT ATAA
1 ATAAT ATAA
1352775 ATTAATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
4 3 0.07
5 30 0.65
6 13 0.28
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:1352735 original size:16 final size:15
Alignment explanation
Indices: 1352714--1352774 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 15
1352704 ATTATACATA
1352714 ATAATATGAATATAAT
1 ATAATAT-AATATAAT
*
1352730 ATAATAAAAATATAAT
1 ATAAT-ATAATATAAT
*
1352746 ATTATATAATAT-AT
1 ATAATATAATATAAT
*
1352760 AAATATATAATATAA
1 ATA-ATATAATATAA
1352775 ATTAATTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
14 3 0.08
15 15 0.41
16 18 0.49
17 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAATATAATATAAT
Found at i:1352787 original size:36 final size:35
Alignment explanation
Indices: 1352728--1352796 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 35
1352718 TATGAATATA
*
1352728 ATATAATAAAAATATAATATTATATAATATATAAAT
1 ATATAATAAAAATATAATATTATA-AATACATAAAT
* *
1352764 ATATAATATAAAT-TAATTTTTATAAATACATAA
1 ATATAATAAAAATATAA-TATTATAAATACATAA
1352797 TAAATTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 11 0.38
36 18 0.62
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (35 bp):
ATATAATAAAAATATAATATTATAAATACATAAAT
Found at i:1353374 original size:19 final size:19
Alignment explanation
Indices: 1353350--1353400 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1353340 ATAATATTTT
1353350 AAATATAATTTTAATAAAA
1 AAATATAATTTTAATAAAA
* * *
1353369 AAATATAAATATAATATAA
1 AAATATAATTTTAATAAAA
*
1353388 ATATATAAATTTT
1 AAATAT-AATTTT
1353401 TGTAATTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATATAATTTTAATAAAA
Found at i:1353471 original size:29 final size:30
Alignment explanation
Indices: 1353430--1353507 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 30
1353420 TGATATATTA
* *
1353430 TTAA-TAATATATATAATTAAAATTTA-AT
1 TTAATTAATTTATATAATTAAAATTAATAT
1353458 TTAATTAATTTATATAATT--AATTAATAT
1 TTAATTAATTTATATAATTAAAATTAATAT
* *
1353486 TTAATAAATTTA-ATATTTAAAA
1 TTAATTAATTTATATAATTAAAA
1353508 AAATTAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 10 0.24
28 17 0.40
29 15 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
TTAATTAATTTATATAATTAAAATTAATAT
Found at i:1353477 original size:13 final size:13
Alignment explanation
Indices: 1353434--1353485 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
1353424 ATATTATTAA
*
1353434 TAATATATATAAT
1 TAATTTATATAAT
*
1353447 TAAAATTTAATTTAAT
1 T--AATTT-ATATAAT
1353463 TAATTTATATAAT
1 TAATTTATATAAT
*
1353476 TAATTAATAT
1 TAATTTATAT
1353486 TTAATAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 16 0.50
14 5 0.16
15 4 0.12
16 7 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATTTATATAAT
Found at i:1353514 original size:16 final size:16
Alignment explanation
Indices: 1353477--1353514 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
1353467 TTATATAATT
*
1353477 AATTAATATTTAATAA
1 AATTAATATTTAAAAA
*
1353493 ATTTAATATTTAAAAA
1 AATTAATATTTAAAAA
1353509 AATTAA
1 AATTAA
1353515 AAATTTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTAATATTTAAAAA
Found at i:1354845 original size:9 final size:10
Alignment explanation
Indices: 1354808--1354848 Score: 50
Period size: 9 Copynumber: 4.1 Consensus size: 10
1354798 TATAATAAAT
1354808 ATTATT-ATA
1 ATTATTAATA
1354817 ATTAATTAATTA
1 ATT-ATTAA-TA
1354829 ATTATTAATA
1 ATTATTAATA
1354839 A-TATTAATA
1 ATTATTAATA
1354848 A
1 A
1354849 AAATTAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 12 0.41
10 6 0.21
11 6 0.21
12 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTATTAATA
Found at i:1358206 original size:57 final size:57
Alignment explanation
Indices: 1358117--1358238 Score: 208
Period size: 57 Copynumber: 2.1 Consensus size: 57
1358107 TACATGACAA
* *
1358117 ATAAGTTTATTCATATCTCACATGCAAATCAATGCATCCAATTAAATGAATATGAGC
1 ATAAGTTTATTCATATCTCACATGCAAATCAATGCATACAATTAAATGAATATAAGC
*
1358174 ATAAGTTTATTCATATCTCACATGCAATTCAATGCATACAATTAAATGAATATAAGC
1 ATAAGTTTATTCATATCTCACATGCAAATCAATGCATACAATTAAATGAATATAAGC
*
1358231 ATATGTTT
1 ATAAGTTT
1358239 TTTAATCTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (57 bp):
ATAAGTTTATTCATATCTCACATGCAAATCAATGCATACAATTAAATGAATATAAGC
Found at i:1359972 original size:19 final size:19
Alignment explanation
Indices: 1359921--1359960 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1359911 TTTATTTACA
*
1359921 TATTCTTGTTATTTTTCTTT
1 TATTATTGTT-TTTTTCTTT
*
1359941 TATTATTCTTTTTTTCTTT
1 TATTATTGTTTTTTTCTTT
1359960 T
1 T
1359961 CTTTATGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.78
Consensus pattern (19 bp):
TATTATTGTTTTTTTCTTT
Found at i:1361738 original size:2 final size:2
Alignment explanation
Indices: 1361694--1361724 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1361684 TTAAAAATAA
1361694 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1361725 CTACAGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1364532 original size:16 final size:16
Alignment explanation
Indices: 1364507--1364537 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1364497 TATAATGCAC
*
1364507 ATGCATATGCTCATTT
1 ATGCACATGCTCATTT
1364523 ATGCACATGCTCATT
1 ATGCACATGCTCATT
1364538 CAACTTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39
Consensus pattern (16 bp):
ATGCACATGCTCATTT
Found at i:1368171 original size:2 final size:2
Alignment explanation
Indices: 1368166--1368195 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1368156 ACAGTGAAAC
1368166 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1368196 GGGGCAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1368702 original size:53 final size:55
Alignment explanation
Indices: 1368622--1368731 Score: 188
Period size: 53 Copynumber: 2.0 Consensus size: 55
1368612 CTCAAGAAAC
*
1368622 GGTTTTAAATGTCTTGGTGGGACTGAAAATAGTTGA-A-ATAATGTTATGAGGTT
1 GGTTTTAAATGCCTTGGTGGGACTGAAAATAGTTGAGATATAATGTTATGAGGTT
*
1368675 GGTTTTAAATGCCTTGGTGGGACTGAAAATGGTTGAGATATAATGTTATGAGGTT
1 GGTTTTAAATGCCTTGGTGGGACTGAAAATAGTTGAGATATAATGTTATGAGGTT
1368730 GG
1 GG
1368732 GATTTGAAAC
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
53 34 0.64
54 1 0.02
55 18 0.34
ACGTcount: A:0.28, C:0.05, G:0.31, T:0.36
Consensus pattern (55 bp):
GGTTTTAAATGCCTTGGTGGGACTGAAAATAGTTGAGATATAATGTTATGAGGTT
Found at i:1368748 original size:55 final size:52
Alignment explanation
Indices: 1368636--1368754 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 52
1368626 TTAAATGTCT
* **
1368636 TGGTGGGACTGAAAATAGTTGAAATAATGTTATGAGGTTGGTTTTAAATGCCT
1 TGGTGGGACTGAAAATAGTTGAAATAATGTTATGAGGTTGGTTTGAAA-GCAA
*
1368689 TGGTGGGACTGAAAATGGTTGAGATATAATGTTATGAGGTTGGGATTTGAAA-CAA
1 TGGTGGGACTGAAAATAGTTGA-A-ATAATGTTATGAGGTT-GG-TTTGAAAGCAA
*
1368744 TGGTGGAACTG
1 TGGTGGGACTG
1368755 TGAATCCCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
53 21 0.37
54 1 0.02
55 27 0.47
56 2 0.04
57 6 0.11
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.33
Consensus pattern (52 bp):
TGGTGGGACTGAAAATAGTTGAAATAATGTTATGAGGTTGGTTTGAAAGCAA
Done.