genome.fa.s2020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2020
Parameters: 2 7 7 80 10 50 1000
Length:  103352

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318--1389	13	5.0	13	74	21	63	30	16	16	36	1.91
1299--1377	33	2.4	33	89	0	122	30	17	15	36	1.91
3638--3663	13	2.0	13	100	0	52	30	15	15	38	1.88
3618--3685	33	2.1	32	91	8	111	35	16	16	32	1.91
4422--4461	18	2.2	18	86	0	53	87	5	2	5	0.73
5595--5979	28	13.4	28	83	5	430	28	30	17	22	1.97
5595--5993	172	2.3	171	85	3	505	28	30	18	22	1.98
5589--6031	144	3.1	143	83	5	525	27	30	18	23	1.97
6877--6951	20	3.8	20	77	7	80	32	14	10	42	1.80
8343--8574	97	2.4	97	86	0	329	29	31	11	28	1.92
11485--11526	21	2.1	20	86	8	59	57	7	11	23	1.59
12363--12437	20	3.8	20	76	3	80	42	10	12	34	1.77
12360--12437	40	2.0	39	85	7	104	42	11	11	34	1.77
12994--14145	28	40.2	28	82	8	1142	24	18	29	27	1.98
13077--14148	57	18.8	56	81	8	1069	23	18	30	27	1.98
17645--17677	16	2.0	17	88	5	50	24	33	33	9	1.87
29407--29481	20	3.8	19	77	7	78	41	10	13	34	1.79
29404--29481	40	2.0	39	87	2	111	41	11	12	34	1.80
30063--30095	11	2.9	12	86	13	52	84	0	15	0	0.61
33548--33640	48	1.9	48	86	0	132	39	12	15	32	1.85
44062--44087	13	2.0	13	100	0	52	38	15	15	30	1.88
46307--46351	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48152--48182	15	2.1	15	93	0	53	48	16	22	12	1.80
52821--52890	33	2.1	33	89	0	104	40	14	11	34	1.82
52846--52870	13	1.9	13	100	0	50	32	16	16	36	1.90
53832--53857	13	2.0	13	100	0	52	30	15	15	38	1.88
57921--57958	20	1.9	20	100	0	76	39	13	15	31	1.86
59722--59780	21	2.8	22	69	23	54	20	15	1	62	1.40
62093--62117	13	1.9	13	100	0	50	32	16	16	36	1.90
64068--64093	13	2.0	13	100	0	52	38	15	15	30	1.88
64050--64114	32	2.0	32	87	6	94	40	18	13	27	1.89
65915--65950	15	2.5	14	95	4	63	86	0	13	0	0.58
66603--66700	36	3.0	34	81	11	116	28	26	13	31	1.94
67564--67589	13	2.0	13	100	0	52	30	23	15	30	1.95
67641--67694	21	2.5	22	93	6	101	37	11	25	25	1.89
67726--67862	53	2.6	53	96	1	247	26	18	17	37	1.93
67832--67902	20	3.5	20	77	11	74	29	12	16	40	1.86
67942--67982	21	2.0	21	85	9	57	39	9	12	39	1.76
68580--68608	13	2.2	13	100	0	58	41	17	13	27	1.87
68596--68686	32	2.8	32	96	0	164	36	9	24	29	1.88
69492--69675	87	2.1	87	95	0	332	32	34	1	32	1.65
72023--72081	21	2.8	21	84	5	66	16	20	0	62	1.32
74060--74158	32	3.1	32	92	0	153	37	8	23	31	1.84
74194--74218	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74648--74690	16	2.7	16	80	20	54	41	4	0	53	1.21
75433--75467	2	17.5	2	100	0	70	0	51	0	48	1.00
79331--79364	18	1.9	18	94	5	61	2	11	0	85	0.71
88932--88964	15	2.1	16	88	5	50	33	18	12	36	1.88
94659--94684	13	2.0	13	100	0	52	30	15	15	38	1.88
94639--94702	32	2.0	33	87	9	96	28	14	15	42	1.86
97233--97258	13	2.0	13	100	0	52	38	15	15	30	1.88
99336--99366	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1

The End!