Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2021
Parameters: 2 7 7 80 10 50 1000
Length:  49307

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13--60
24
2.0
25
83
4
62
2
45
2
50
1.25
371--589
34
6.5
34
82
4
255
38
26
8
25
1.85
365--589
68
3.3
67
83
2
288
39
26
8
25
1.84
365--589
102
2.2
101
87
1
342
39
26
8
25
1.84
4649--4703
19
2.9
19
86
5
76
34
9
18
38
1.82
5012--5227
34
6.4
34
80
5
215
42
25
6
26
1.79
5011--5227
68
3.2
67
80
3
240
41
25
6
26
1.79
5010--5227
102
2.1
101
85
3
303
42
25
6
26
1.79
6412--6496
25
3.5
24
72
13
68
61
3
1
34
1.21
7383--7423
14
2.7
15
79
20
50
39
4
0
56
1.21
7428--7662
119
2.0
118
88
0
353
31
12
8
47
1.71
12835--12876
21
2.0
20
90
4
66
61
0
0
38
0.96
14510--14540
15
2.1
15
93
0
53
41
12
16
29
1.85
14626--14681
29
1.9
29
82
7
69
57
17
0
25
1.41
16387--16411
2
12.5
2
100
0
50
52
0
0
48
1.00
16678--16725
24
2.0
24
88
8
71
50
0
4
45
1.21
16702--16751
16
3.2
16
77
5
59
44
0
0
56
0.99
18502--18531
5
6.0
5
92
0
51
36
0
3
60
1.14
21897--21941
17
2.7
18
74
19
53
33
0
0
66
0.92
22320--22374
25
2.3
24
82
11
78
60
0
0
40
0.97
22328--22374
13
3.8
12
80
8
58
57
0
0
42
0.98
23071--23129
29
2.0
29
87
6
84
40
3
0
55
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23829--23890
32
2.0
32
81
12
76
69
4
0
25
1.08
27311--27528
34
6.5
34
85
5
282
40
27
7
24
1.82
27309--27528
67
3.3
67
88
1
323
40
27
7
24
1.82
31594--31656
19
3.3
19
90
0
90
34
19
17
28
1.94
31962--32177
34
6.4
34
86
2
267
40
25
7
26
1.83
31960--32177
67
3.2
67
85
2
285
40
25
7
26
1.82
32835--32884
19
2.6
19
87
0
64
70
0
30
0
0.88
32834--32881
15
3.1
15
78
3
51
70
0
29
0
0.87
37843--37867
6
4.2
6
100
0
50
20
16
16
48
1.82
48442--48466
13
1.9
13
100
0
50
48
0
52
0
1.00

Tables:   1

The End!